Multiple sequence alignment - TraesCS7D01G227300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G227300 chr7D 100.000 2974 0 0 1 2974 187196235 187199208 0.000000e+00 5493.0
1 TraesCS7D01G227300 chr7B 92.991 2297 78 37 1 2225 330514036 330516321 0.000000e+00 3273.0
2 TraesCS7D01G227300 chr7B 83.712 264 35 5 2219 2475 330522367 330522629 2.960000e-60 243.0
3 TraesCS7D01G227300 chr7A 92.171 1635 51 24 171 1755 197302455 197300848 0.000000e+00 2239.0
4 TraesCS7D01G227300 chr7A 91.771 559 22 15 1767 2305 197300793 197300239 0.000000e+00 756.0
5 TraesCS7D01G227300 chr7A 84.116 724 64 22 2288 2974 197299361 197298652 0.000000e+00 652.0
6 TraesCS7D01G227300 chr7A 92.778 180 10 2 1 178 197303369 197303191 1.060000e-64 257.0
7 TraesCS7D01G227300 chr6D 100.000 31 0 0 1718 1748 126871617 126871647 1.150000e-04 58.4
8 TraesCS7D01G227300 chr6B 100.000 31 0 0 1718 1748 225868150 225868180 1.150000e-04 58.4
9 TraesCS7D01G227300 chr6A 100.000 31 0 0 1718 1748 152060980 152060950 1.150000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G227300 chr7D 187196235 187199208 2973 False 5493 5493 100.000 1 2974 1 chr7D.!!$F1 2973
1 TraesCS7D01G227300 chr7B 330514036 330516321 2285 False 3273 3273 92.991 1 2225 1 chr7B.!!$F1 2224
2 TraesCS7D01G227300 chr7A 197298652 197303369 4717 True 976 2239 90.209 1 2974 4 chr7A.!!$R1 2973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 164 0.817634 TCGCACTTTTGTCCACCCTG 60.818 55.000 0.0 0.0 0.0 4.45 F
791 1576 1.065764 TCGAAGATGCCACGATCCG 59.934 57.895 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1231 2025 0.452987 CTGATGCCGATTGGTTGGTG 59.547 55.0 0.0 0.0 37.67 4.17 R
2726 4539 0.178973 TCTCCTCACGAACCTGGACA 60.179 55.0 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 158 2.095718 GTCATCCTTCGCACTTTTGTCC 60.096 50.000 0.00 0.00 0.00 4.02
161 164 0.817634 TCGCACTTTTGTCCACCCTG 60.818 55.000 0.00 0.00 0.00 4.45
254 1000 2.010145 GCAGGTGCAAAGATCGACTA 57.990 50.000 0.00 0.00 41.59 2.59
350 1101 5.747951 AAGACAAAAGCACTGAGAAGAAG 57.252 39.130 0.00 0.00 0.00 2.85
357 1108 8.150945 ACAAAAGCACTGAGAAGAAGACTATAA 58.849 33.333 0.00 0.00 0.00 0.98
360 1111 7.416964 AGCACTGAGAAGAAGACTATAACAT 57.583 36.000 0.00 0.00 0.00 2.71
382 1133 7.410174 ACATAGTTTGGGGATATTCAAGTTGA 58.590 34.615 0.08 0.08 0.00 3.18
496 1270 6.694447 CCCACTTCTGTTCATCATTCAAAAT 58.306 36.000 0.00 0.00 0.00 1.82
542 1316 2.673775 AACATGGATGAACACCACCA 57.326 45.000 0.00 0.00 40.36 4.17
543 1317 1.909700 ACATGGATGAACACCACCAC 58.090 50.000 0.00 0.00 40.36 4.16
587 1361 3.242543 CGTGCATGGAGATTTTAGCAGAC 60.243 47.826 0.00 0.00 32.03 3.51
781 1566 1.914051 CACGTAGCACAGTCGAAGATG 59.086 52.381 0.00 0.00 40.67 2.90
791 1576 1.065764 TCGAAGATGCCACGATCCG 59.934 57.895 0.00 0.00 0.00 4.18
1231 2025 2.917296 GCTAGTAGCCGATTACGCAGTC 60.917 54.545 11.33 0.00 37.29 3.51
1237 2031 0.719465 CCGATTACGCAGTCACCAAC 59.281 55.000 0.00 0.00 43.93 3.77
1250 2049 0.452987 CACCAACCAATCGGCATCAG 59.547 55.000 0.00 0.00 34.57 2.90
1273 2074 1.202604 TGACCGGCGATTTATTCTCCC 60.203 52.381 9.30 0.00 0.00 4.30
1274 2075 1.070289 GACCGGCGATTTATTCTCCCT 59.930 52.381 9.30 0.00 0.00 4.20
1396 2200 1.002257 TGCGTGGTACGTCCTCCTA 60.002 57.895 0.00 0.00 44.73 2.94
1409 2213 1.388065 CCTCCTACTCCTCTGCACCG 61.388 65.000 0.00 0.00 0.00 4.94
1421 2225 3.133464 GCACCGCAGCAGCCATTA 61.133 61.111 0.00 0.00 37.52 1.90
1422 2226 2.793946 CACCGCAGCAGCCATTAC 59.206 61.111 0.00 0.00 37.52 1.89
1423 2227 2.438434 ACCGCAGCAGCCATTACC 60.438 61.111 0.00 0.00 37.52 2.85
1430 2234 1.026718 AGCAGCCATTACCGAGTTGC 61.027 55.000 0.00 0.00 0.00 4.17
1446 2253 4.796830 CGAGTTGCTCGCTAGTAATAACAA 59.203 41.667 5.60 0.00 46.75 2.83
1776 2646 6.653320 GTCCACCATATACTCTGTTGTTGAAA 59.347 38.462 0.00 0.00 0.00 2.69
1777 2647 7.174253 GTCCACCATATACTCTGTTGTTGAAAA 59.826 37.037 0.00 0.00 0.00 2.29
1779 2649 8.522830 CCACCATATACTCTGTTGTTGAAAAAT 58.477 33.333 0.00 0.00 0.00 1.82
1780 2650 9.559958 CACCATATACTCTGTTGTTGAAAAATC 57.440 33.333 0.00 0.00 0.00 2.17
1798 2675 7.595875 TGAAAAATCATAGAACGAACTGACGTA 59.404 33.333 0.00 0.00 45.83 3.57
1801 2678 8.475331 AAATCATAGAACGAACTGACGTATTT 57.525 30.769 0.00 0.00 45.83 1.40
1803 2680 5.287752 TCATAGAACGAACTGACGTATTTGC 59.712 40.000 0.00 0.00 45.83 3.68
1805 2682 2.450609 ACGAACTGACGTATTTGCCT 57.549 45.000 0.00 0.00 44.72 4.75
1807 2684 1.201921 CGAACTGACGTATTTGCCTGC 60.202 52.381 0.00 0.00 0.00 4.85
1811 2688 1.448893 GACGTATTTGCCTGCGGGA 60.449 57.895 18.31 0.00 33.58 5.14
1812 2689 1.003112 ACGTATTTGCCTGCGGGAA 60.003 52.632 18.31 0.00 33.58 3.97
2040 2931 5.273674 TGGTTTTCATTCATGTTTCTGCA 57.726 34.783 0.00 0.00 0.00 4.41
2041 2932 5.856156 TGGTTTTCATTCATGTTTCTGCAT 58.144 33.333 0.00 0.00 0.00 3.96
2042 2933 5.697178 TGGTTTTCATTCATGTTTCTGCATG 59.303 36.000 0.00 0.00 45.48 4.06
2043 2934 5.390145 GGTTTTCATTCATGTTTCTGCATGC 60.390 40.000 11.82 11.82 44.20 4.06
2056 2947 1.437735 GCATGCGTCGATCGATTGC 60.438 57.895 28.11 28.11 42.86 3.56
2212 3104 9.698309 CATCCGTATGATCTGTATAAACTCTTT 57.302 33.333 0.00 0.00 34.84 2.52
2231 3125 3.565764 TTCATGATGATGGTGGAGGAC 57.434 47.619 0.00 0.00 0.00 3.85
2255 3149 4.890158 TGCCTCTGACAATCTCTGTTAA 57.110 40.909 0.00 0.00 38.84 2.01
2256 3150 5.227569 TGCCTCTGACAATCTCTGTTAAA 57.772 39.130 0.00 0.00 38.84 1.52
2257 3151 5.240891 TGCCTCTGACAATCTCTGTTAAAG 58.759 41.667 0.00 0.00 38.84 1.85
2261 3155 6.146837 CCTCTGACAATCTCTGTTAAAGTGTG 59.853 42.308 0.00 0.00 38.84 3.82
2275 3169 0.973632 AGTGTGCGGGACAGTTATCA 59.026 50.000 1.39 0.00 34.24 2.15
2299 3193 6.021596 ACGCGATCAAGTTAACATTTCATTC 58.978 36.000 15.93 0.00 0.00 2.67
2307 3201 8.514594 TCAAGTTAACATTTCATTCAGCTTAGG 58.485 33.333 8.61 0.00 0.00 2.69
2308 3202 8.514594 CAAGTTAACATTTCATTCAGCTTAGGA 58.485 33.333 8.61 0.00 0.00 2.94
2318 4107 1.819288 TCAGCTTAGGACGTCTCCAAG 59.181 52.381 16.46 15.83 39.39 3.61
2413 4215 3.680156 GCCATCAAACAAGGCGGA 58.320 55.556 0.00 0.00 38.86 5.54
2487 4289 8.005388 TGCTCTAAACATCCTACTATACTCCTT 58.995 37.037 0.00 0.00 0.00 3.36
2490 4295 9.352191 TCTAAACATCCTACTATACTCCTTGTC 57.648 37.037 0.00 0.00 0.00 3.18
2501 4306 1.155390 TCCTTGTCGGAGGTGAGGT 59.845 57.895 0.00 0.00 36.69 3.85
2504 4309 1.228337 TTGTCGGAGGTGAGGTCGA 60.228 57.895 0.00 0.00 0.00 4.20
2505 4310 1.241990 TTGTCGGAGGTGAGGTCGAG 61.242 60.000 0.00 0.00 32.09 4.04
2525 4330 1.779061 ATGACCCCCACGTCAAAGCT 61.779 55.000 0.00 0.00 45.49 3.74
2528 4333 2.281761 CCCCACGTCAAAGCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
2546 4351 0.163788 CTGACATCGTCGTTGTTGGC 59.836 55.000 10.14 0.00 34.95 4.52
2548 4353 1.000052 TGACATCGTCGTTGTTGGCTA 60.000 47.619 10.14 0.00 34.95 3.93
2550 4355 1.269883 ACATCGTCGTTGTTGGCTACA 60.270 47.619 3.09 0.00 34.12 2.74
2551 4356 1.390123 CATCGTCGTTGTTGGCTACAG 59.610 52.381 1.44 0.00 38.19 2.74
2591 4404 0.038159 CTCTTTGACTCCGACGCCTT 60.038 55.000 0.00 0.00 0.00 4.35
2592 4405 0.391597 TCTTTGACTCCGACGCCTTT 59.608 50.000 0.00 0.00 0.00 3.11
2597 4410 1.546923 TGACTCCGACGCCTTTTCATA 59.453 47.619 0.00 0.00 0.00 2.15
2598 4411 2.167693 TGACTCCGACGCCTTTTCATAT 59.832 45.455 0.00 0.00 0.00 1.78
2617 4430 6.821388 TCATATCCTTAACCTTGAGCTTCTC 58.179 40.000 0.00 0.00 0.00 2.87
2642 4455 3.940640 CATTCCCGCCGCATGTCG 61.941 66.667 0.00 0.00 38.08 4.35
2654 4467 0.986992 GCATGTCGTTGATGCAAAGC 59.013 50.000 9.99 0.00 44.74 3.51
2679 4492 1.349627 CTCACGCGGTCAATCATGC 59.650 57.895 12.47 0.00 0.00 4.06
2709 4522 3.142838 ATGGATGCAAGCACCGCC 61.143 61.111 0.00 0.10 0.00 6.13
2736 4549 0.797249 CGTCGACGATGTCCAGGTTC 60.797 60.000 33.35 0.00 43.02 3.62
2769 4582 1.257936 GCCACGACTACAACATATGCG 59.742 52.381 1.58 0.00 0.00 4.73
2794 4607 2.046892 CCTCCAGTTCAGCCACCG 60.047 66.667 0.00 0.00 0.00 4.94
2797 4610 2.738521 CCAGTTCAGCCACCGTCG 60.739 66.667 0.00 0.00 0.00 5.12
2829 4642 2.945008 CTGCAAAAGTGTCTGGTTGAGA 59.055 45.455 0.00 0.00 0.00 3.27
2835 4648 5.825593 AAAGTGTCTGGTTGAGATCCTTA 57.174 39.130 0.00 0.00 31.63 2.69
2836 4649 5.825593 AAGTGTCTGGTTGAGATCCTTAA 57.174 39.130 0.00 0.00 31.63 1.85
2837 4650 6.380079 AAGTGTCTGGTTGAGATCCTTAAT 57.620 37.500 0.00 0.00 31.63 1.40
2838 4651 6.380079 AGTGTCTGGTTGAGATCCTTAATT 57.620 37.500 0.00 0.00 31.63 1.40
2839 4652 6.410540 AGTGTCTGGTTGAGATCCTTAATTC 58.589 40.000 0.00 0.00 31.63 2.17
2841 4654 5.488919 TGTCTGGTTGAGATCCTTAATTCCT 59.511 40.000 0.00 0.00 31.63 3.36
2843 4656 7.182026 TGTCTGGTTGAGATCCTTAATTCCTTA 59.818 37.037 0.00 0.00 31.63 2.69
2844 4657 8.214364 GTCTGGTTGAGATCCTTAATTCCTTAT 58.786 37.037 0.00 0.00 31.63 1.73
2845 4658 8.432805 TCTGGTTGAGATCCTTAATTCCTTATC 58.567 37.037 0.00 0.00 0.00 1.75
2846 4659 7.518188 TGGTTGAGATCCTTAATTCCTTATCC 58.482 38.462 0.00 0.00 0.00 2.59
2847 4660 6.651225 GGTTGAGATCCTTAATTCCTTATCCG 59.349 42.308 0.00 0.00 0.00 4.18
2848 4661 5.794894 TGAGATCCTTAATTCCTTATCCGC 58.205 41.667 0.00 0.00 0.00 5.54
2849 4662 5.306937 TGAGATCCTTAATTCCTTATCCGCA 59.693 40.000 0.00 0.00 0.00 5.69
2850 4663 5.552178 AGATCCTTAATTCCTTATCCGCAC 58.448 41.667 0.00 0.00 0.00 5.34
2851 4664 3.724374 TCCTTAATTCCTTATCCGCACG 58.276 45.455 0.00 0.00 0.00 5.34
2852 4665 3.385433 TCCTTAATTCCTTATCCGCACGA 59.615 43.478 0.00 0.00 0.00 4.35
2871 4684 3.116300 CGATTGTATGGTGAAGAGGTCG 58.884 50.000 0.00 0.00 0.00 4.79
2874 4687 1.822990 TGTATGGTGAAGAGGTCGTCC 59.177 52.381 0.00 0.00 0.00 4.79
2876 4689 2.126031 GGTGAAGAGGTCGTCCGC 60.126 66.667 0.00 0.00 39.05 5.54
2923 4748 1.374758 CCGAAGAGCTCGCAGGTTT 60.375 57.895 8.37 0.00 46.71 3.27
2946 4771 2.765969 CCTCAATGTGGGCCTGGT 59.234 61.111 4.53 0.00 0.00 4.00
2949 4774 3.751246 CAATGTGGGCCTGGTGCG 61.751 66.667 4.53 0.00 42.61 5.34
2950 4775 3.965258 AATGTGGGCCTGGTGCGA 61.965 61.111 4.53 0.00 42.61 5.10
2966 4791 3.262686 GAACCTCCGCCGCGATTC 61.263 66.667 15.93 8.62 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 158 6.828273 TCCATAACAATAAGATCAACAGGGTG 59.172 38.462 0.00 0.00 0.00 4.61
357 1108 7.339466 GTCAACTTGAATATCCCCAAACTATGT 59.661 37.037 0.00 0.00 0.00 2.29
360 1111 7.027874 AGTCAACTTGAATATCCCCAAACTA 57.972 36.000 0.00 0.00 0.00 2.24
382 1133 3.048602 CCCAACGGTCGTGAGAGT 58.951 61.111 0.00 0.00 43.49 3.24
529 1303 1.470098 GATGCAGTGGTGGTGTTCATC 59.530 52.381 0.00 0.00 0.00 2.92
542 1316 1.343142 TGTTGTAGTCCGTGATGCAGT 59.657 47.619 0.00 0.00 0.00 4.40
543 1317 1.726791 GTGTTGTAGTCCGTGATGCAG 59.273 52.381 0.00 0.00 0.00 4.41
587 1361 7.689400 GCACAAATGTTTTCTTTCTCAACTTTG 59.311 33.333 0.00 0.00 31.72 2.77
715 1491 2.808206 CCTACGTGGCATCTCCCCC 61.808 68.421 0.00 0.00 0.00 5.40
1223 2017 1.803334 GATTGGTTGGTGACTGCGTA 58.197 50.000 0.00 0.00 0.00 4.42
1225 2019 1.497278 CGATTGGTTGGTGACTGCG 59.503 57.895 0.00 0.00 0.00 5.18
1231 2025 0.452987 CTGATGCCGATTGGTTGGTG 59.547 55.000 0.00 0.00 37.67 4.17
1237 2031 1.293924 GTCAGACTGATGCCGATTGG 58.706 55.000 8.73 0.00 38.77 3.16
1250 2049 2.795470 GAGAATAAATCGCCGGTCAGAC 59.205 50.000 1.90 0.00 0.00 3.51
1273 2074 2.046892 CCCGAAGTCCCTGCACAG 60.047 66.667 0.00 0.00 0.00 3.66
1274 2075 2.391724 GAACCCGAAGTCCCTGCACA 62.392 60.000 0.00 0.00 0.00 4.57
1409 2213 1.026718 AACTCGGTAATGGCTGCTGC 61.027 55.000 7.10 7.10 38.76 5.25
1430 2234 5.291128 CACAACCCTTGTTATTACTAGCGAG 59.709 44.000 0.00 0.00 43.23 5.03
1446 2253 4.290622 CCCAGGCTGCACAACCCT 62.291 66.667 9.56 0.00 0.00 4.34
1764 2634 8.148807 TCGTTCTATGATTTTTCAACAACAGA 57.851 30.769 0.00 0.00 0.00 3.41
1766 2636 8.402472 AGTTCGTTCTATGATTTTTCAACAACA 58.598 29.630 0.00 0.00 0.00 3.33
1776 2646 8.380644 CAAATACGTCAGTTCGTTCTATGATTT 58.619 33.333 0.00 0.00 43.80 2.17
1777 2647 7.464178 GCAAATACGTCAGTTCGTTCTATGATT 60.464 37.037 0.00 0.00 43.80 2.57
1779 2649 5.287752 GCAAATACGTCAGTTCGTTCTATGA 59.712 40.000 0.00 0.00 43.80 2.15
1780 2650 5.481472 GCAAATACGTCAGTTCGTTCTATG 58.519 41.667 0.00 0.00 43.80 2.23
1782 2652 3.922240 GGCAAATACGTCAGTTCGTTCTA 59.078 43.478 0.00 0.00 43.80 2.10
2040 2931 0.578683 CAAGCAATCGATCGACGCAT 59.421 50.000 31.45 22.59 42.26 4.73
2041 2932 0.457681 TCAAGCAATCGATCGACGCA 60.458 50.000 31.45 16.24 42.26 5.24
2042 2933 0.855349 ATCAAGCAATCGATCGACGC 59.145 50.000 26.04 26.04 42.26 5.19
2043 2934 2.884088 CAATCAAGCAATCGATCGACG 58.116 47.619 22.06 15.73 44.09 5.12
2056 2947 1.444895 GCGTGGCAAGGCAATCAAG 60.445 57.895 0.00 0.00 37.15 3.02
2212 3104 1.413812 CGTCCTCCACCATCATCATGA 59.586 52.381 0.00 0.00 30.57 3.07
2231 3125 1.998315 CAGAGATTGTCAGAGGCAACG 59.002 52.381 0.00 0.00 46.39 4.10
2255 3149 1.346395 TGATAACTGTCCCGCACACTT 59.654 47.619 0.00 0.00 0.00 3.16
2256 3150 0.973632 TGATAACTGTCCCGCACACT 59.026 50.000 0.00 0.00 0.00 3.55
2257 3151 1.076332 GTGATAACTGTCCCGCACAC 58.924 55.000 0.00 0.00 0.00 3.82
2261 3155 2.514013 CGCGTGATAACTGTCCCGC 61.514 63.158 0.00 0.00 37.91 6.13
2275 3169 5.545658 ATGAAATGTTAACTTGATCGCGT 57.454 34.783 5.77 0.00 0.00 6.01
2278 3172 7.246311 AGCTGAATGAAATGTTAACTTGATCG 58.754 34.615 7.22 0.00 0.00 3.69
2299 3193 1.134965 CCTTGGAGACGTCCTAAGCTG 60.135 57.143 13.01 2.67 44.30 4.24
2305 3199 3.382832 CCGCCTTGGAGACGTCCT 61.383 66.667 13.01 0.00 44.30 3.85
2306 3200 3.644399 GACCGCCTTGGAGACGTCC 62.644 68.421 13.01 3.55 44.24 4.79
2307 3201 2.126031 GACCGCCTTGGAGACGTC 60.126 66.667 7.70 7.70 42.00 4.34
2308 3202 3.692406 GGACCGCCTTGGAGACGT 61.692 66.667 0.00 0.00 42.00 4.34
2379 4180 0.980423 GGCTAGGATGGATGACCTCC 59.020 60.000 0.00 0.00 45.19 4.30
2383 4184 3.777106 TTGATGGCTAGGATGGATGAC 57.223 47.619 0.00 0.00 0.00 3.06
2385 4186 3.824133 TGTTTGATGGCTAGGATGGATG 58.176 45.455 0.00 0.00 0.00 3.51
2446 4248 8.500753 TGTTTAGAGCAGTTTTTAGAGTGAAA 57.499 30.769 0.00 0.00 0.00 2.69
2487 4289 1.674651 CTCGACCTCACCTCCGACA 60.675 63.158 0.00 0.00 0.00 4.35
2490 4295 0.748367 TCATCTCGACCTCACCTCCG 60.748 60.000 0.00 0.00 0.00 4.63
2501 4306 2.036731 ACGTGGGGGTCATCTCGA 59.963 61.111 0.00 0.00 0.00 4.04
2504 4309 0.324943 CTTTGACGTGGGGGTCATCT 59.675 55.000 0.00 0.00 45.62 2.90
2505 4310 1.305930 GCTTTGACGTGGGGGTCATC 61.306 60.000 0.00 0.00 45.62 2.92
2525 4330 0.858583 CAACAACGACGATGTCAGCA 59.141 50.000 11.37 0.00 32.09 4.41
2528 4333 0.249699 AGCCAACAACGACGATGTCA 60.250 50.000 11.37 0.00 32.09 3.58
2564 4369 0.877743 GGAGTCAAAGAGGCACAAGC 59.122 55.000 0.00 0.00 41.10 4.01
2565 4370 1.151668 CGGAGTCAAAGAGGCACAAG 58.848 55.000 0.00 0.00 0.00 3.16
2571 4384 1.446272 GGCGTCGGAGTCAAAGAGG 60.446 63.158 0.00 0.00 0.00 3.69
2575 4388 1.223187 GAAAAGGCGTCGGAGTCAAA 58.777 50.000 0.00 0.00 0.00 2.69
2579 4392 2.483188 GGATATGAAAAGGCGTCGGAGT 60.483 50.000 0.00 0.00 0.00 3.85
2591 4404 7.633789 AGAAGCTCAAGGTTAAGGATATGAAA 58.366 34.615 0.00 0.00 35.69 2.69
2592 4405 7.200434 AGAAGCTCAAGGTTAAGGATATGAA 57.800 36.000 0.00 0.00 35.69 2.57
2597 4410 3.769844 TCGAGAAGCTCAAGGTTAAGGAT 59.230 43.478 0.00 0.00 35.69 3.24
2598 4411 3.162666 TCGAGAAGCTCAAGGTTAAGGA 58.837 45.455 0.00 0.00 35.69 3.36
2617 4430 1.878522 CGGCGGGAATGACTCTTCG 60.879 63.158 0.00 0.00 0.00 3.79
2642 4455 1.444895 CCGCCAGCTTTGCATCAAC 60.445 57.895 5.87 0.00 0.00 3.18
2681 4494 2.515290 CATCCATGCAGAGCGCCA 60.515 61.111 2.29 0.00 41.33 5.69
2724 4537 0.895530 TCCTCACGAACCTGGACATC 59.104 55.000 0.00 0.00 0.00 3.06
2726 4539 0.178973 TCTCCTCACGAACCTGGACA 60.179 55.000 0.00 0.00 0.00 4.02
2732 4545 0.806492 GGCGAATCTCCTCACGAACC 60.806 60.000 0.00 0.00 0.00 3.62
2736 4549 1.874019 CGTGGCGAATCTCCTCACG 60.874 63.158 0.00 0.00 43.58 4.35
2810 4623 3.057946 GGATCTCAACCAGACACTTTTGC 60.058 47.826 0.00 0.00 32.26 3.68
2829 4642 4.039973 TCGTGCGGATAAGGAATTAAGGAT 59.960 41.667 0.00 0.00 0.00 3.24
2835 4648 3.541632 ACAATCGTGCGGATAAGGAATT 58.458 40.909 0.00 0.00 34.08 2.17
2836 4649 3.194005 ACAATCGTGCGGATAAGGAAT 57.806 42.857 0.00 0.00 34.08 3.01
2837 4650 2.684001 ACAATCGTGCGGATAAGGAA 57.316 45.000 0.00 0.00 34.08 3.36
2838 4651 3.554129 CCATACAATCGTGCGGATAAGGA 60.554 47.826 0.00 0.00 34.08 3.36
2839 4652 2.736721 CCATACAATCGTGCGGATAAGG 59.263 50.000 0.00 0.00 34.08 2.69
2841 4654 3.127589 CACCATACAATCGTGCGGATAA 58.872 45.455 0.00 0.00 34.08 1.75
2843 4656 1.138069 TCACCATACAATCGTGCGGAT 59.862 47.619 0.00 0.00 36.78 4.18
2844 4657 0.533032 TCACCATACAATCGTGCGGA 59.467 50.000 0.00 0.00 0.00 5.54
2845 4658 1.327460 CTTCACCATACAATCGTGCGG 59.673 52.381 0.00 0.00 0.00 5.69
2846 4659 2.267426 TCTTCACCATACAATCGTGCG 58.733 47.619 0.00 0.00 0.00 5.34
2847 4660 2.609459 CCTCTTCACCATACAATCGTGC 59.391 50.000 0.00 0.00 0.00 5.34
2848 4661 3.861840 ACCTCTTCACCATACAATCGTG 58.138 45.455 0.00 0.00 0.00 4.35
2849 4662 3.428999 CGACCTCTTCACCATACAATCGT 60.429 47.826 0.00 0.00 0.00 3.73
2850 4663 3.116300 CGACCTCTTCACCATACAATCG 58.884 50.000 0.00 0.00 0.00 3.34
2851 4664 4.113354 GACGACCTCTTCACCATACAATC 58.887 47.826 0.00 0.00 0.00 2.67
2852 4665 3.118738 GGACGACCTCTTCACCATACAAT 60.119 47.826 0.00 0.00 0.00 2.71
2908 4733 3.660621 GCAAACCTGCGAGCTCTT 58.339 55.556 12.85 0.00 39.20 2.85
2917 4742 0.169672 CATTGAGGCGAGCAAACCTG 59.830 55.000 0.00 0.00 36.05 4.00
2923 4748 2.046023 CCCACATTGAGGCGAGCA 60.046 61.111 0.00 0.00 0.00 4.26
2949 4774 3.262686 GAATCGCGGCGGAGGTTC 61.263 66.667 23.46 16.55 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.