Multiple sequence alignment - TraesCS7D01G227100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G227100 chr7D 100.000 6855 0 0 1 6855 187110564 187103710 0.000000e+00 12659.0
1 TraesCS7D01G227100 chr7D 94.737 95 4 1 5536 5629 426558893 426558987 5.540000e-31 147.0
2 TraesCS7D01G227100 chr7D 89.655 116 9 3 5513 5626 163351772 163351886 1.990000e-30 145.0
3 TraesCS7D01G227100 chr7D 90.000 110 8 3 5521 5629 141292069 141292176 9.270000e-29 139.0
4 TraesCS7D01G227100 chr7B 96.288 3044 67 13 2520 5543 329855695 329852678 0.000000e+00 4953.0
5 TraesCS7D01G227100 chr7B 95.622 571 23 2 5976 6545 329852210 329851641 0.000000e+00 915.0
6 TraesCS7D01G227100 chr7B 87.744 718 38 24 629 1314 329857330 329856631 0.000000e+00 793.0
7 TraesCS7D01G227100 chr7B 87.383 642 38 20 1 626 329858799 329858185 0.000000e+00 697.0
8 TraesCS7D01G227100 chr7B 87.526 481 48 9 1855 2328 329856165 329855690 4.680000e-151 545.0
9 TraesCS7D01G227100 chr7B 96.330 327 9 3 5624 5949 329852679 329852355 1.010000e-147 534.0
10 TraesCS7D01G227100 chr7B 93.610 313 10 4 6544 6855 329851517 329851214 6.270000e-125 459.0
11 TraesCS7D01G227100 chr7B 92.157 51 4 0 4100 4150 603970816 603970866 9.540000e-09 73.1
12 TraesCS7D01G227100 chr7B 100.000 32 0 0 3180 3211 329855018 329854987 7.420000e-05 60.2
13 TraesCS7D01G227100 chr7A 96.396 2664 70 16 2525 5184 197998806 198001447 0.000000e+00 4364.0
14 TraesCS7D01G227100 chr7A 96.439 1685 49 5 5181 6855 198001549 198003232 0.000000e+00 2769.0
15 TraesCS7D01G227100 chr7A 83.671 692 68 21 766 1423 197997156 197997836 1.630000e-170 610.0
16 TraesCS7D01G227100 chr7A 90.501 379 29 7 1935 2308 197998430 197998806 1.720000e-135 494.0
17 TraesCS7D01G227100 chr7A 85.311 354 32 12 134 483 197995947 197996284 1.420000e-91 348.0
18 TraesCS7D01G227100 chr7A 95.215 209 7 3 2327 2534 521802376 521802170 1.840000e-85 327.0
19 TraesCS7D01G227100 chr7A 94.737 152 3 2 2 153 197995786 197995932 1.490000e-56 231.0
20 TraesCS7D01G227100 chr7A 79.217 332 33 10 1438 1764 197997934 197998234 1.510000e-46 198.0
21 TraesCS7D01G227100 chr6A 96.667 210 4 3 2325 2532 570985728 570985520 5.090000e-91 346.0
22 TraesCS7D01G227100 chr6A 94.762 210 8 3 2325 2532 576665704 576665496 2.380000e-84 324.0
23 TraesCS7D01G227100 chr2D 97.549 204 2 2 2327 2530 106118566 106118366 5.090000e-91 346.0
24 TraesCS7D01G227100 chr2D 83.562 73 10 2 3680 3751 611234198 611234127 4.440000e-07 67.6
25 TraesCS7D01G227100 chr2D 89.362 47 5 0 3680 3726 427330715 427330669 7.420000e-05 60.2
26 TraesCS7D01G227100 chr2D 81.690 71 11 2 3682 3751 427444456 427444387 2.670000e-04 58.4
27 TraesCS7D01G227100 chr1A 96.667 210 4 3 2325 2532 586372725 586372933 5.090000e-91 346.0
28 TraesCS7D01G227100 chr3A 96.190 210 5 3 2325 2532 690792772 690792980 2.370000e-89 340.0
29 TraesCS7D01G227100 chr2A 95.714 210 6 3 2325 2532 769618682 769618474 1.100000e-87 335.0
30 TraesCS7D01G227100 chr2A 91.346 104 5 3 5542 5642 498099527 498099425 9.270000e-29 139.0
31 TraesCS7D01G227100 chr2A 82.192 73 11 2 3680 3751 743576098 743576027 2.060000e-05 62.1
32 TraesCS7D01G227100 chr3D 96.535 202 6 1 2324 2524 378782478 378782679 3.960000e-87 333.0
33 TraesCS7D01G227100 chr3D 81.448 221 30 8 4221 4439 499042663 499042452 3.290000e-38 171.0
34 TraesCS7D01G227100 chr3D 91.429 105 6 3 5536 5638 420822279 420822382 2.580000e-29 141.0
35 TraesCS7D01G227100 chr3D 88.793 116 10 3 5513 5626 574516665 574516551 9.270000e-29 139.0
36 TraesCS7D01G227100 chr4A 95.652 207 7 2 2324 2528 17882678 17882884 1.430000e-86 331.0
37 TraesCS7D01G227100 chr1D 84.932 219 25 5 1550 1764 484241949 484242163 1.500000e-51 215.0
38 TraesCS7D01G227100 chr1D 88.793 116 10 3 5513 5626 113880738 113880852 9.270000e-29 139.0
39 TraesCS7D01G227100 chr2B 91.964 112 4 4 5521 5630 63783706 63783814 1.190000e-32 152.0
40 TraesCS7D01G227100 chr2B 90.196 51 5 0 4100 4150 481152584 481152534 4.440000e-07 67.6
41 TraesCS7D01G227100 chr2B 83.562 73 10 2 3680 3751 746138775 746138704 4.440000e-07 67.6
42 TraesCS7D01G227100 chr2B 81.429 70 13 0 3682 3751 504321649 504321580 2.670000e-04 58.4
43 TraesCS7D01G227100 chr5A 96.078 51 2 0 4100 4150 469123449 469123399 4.410000e-12 84.2
44 TraesCS7D01G227100 chr6B 94.118 51 3 0 4100 4150 270516335 270516285 2.050000e-10 78.7
45 TraesCS7D01G227100 chr6B 94.118 51 3 0 4100 4150 270567008 270566958 2.050000e-10 78.7
46 TraesCS7D01G227100 chr6B 94.118 51 3 0 4100 4150 270632103 270632053 2.050000e-10 78.7
47 TraesCS7D01G227100 chr6B 93.617 47 3 0 4100 4146 270693444 270693398 3.430000e-08 71.3
48 TraesCS7D01G227100 chr4D 81.818 88 14 2 1761 1848 43556702 43556787 9.540000e-09 73.1
49 TraesCS7D01G227100 chr5B 90.698 43 3 1 1763 1805 479195943 479195902 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G227100 chr7D 187103710 187110564 6854 True 12659.000000 12659 100.000000 1 6855 1 chr7D.!!$R1 6854
1 TraesCS7D01G227100 chr7B 329851214 329858799 7585 True 1119.525000 4953 93.062875 1 6855 8 chr7B.!!$R1 6854
2 TraesCS7D01G227100 chr7A 197995786 198003232 7446 False 1287.714286 4364 89.467429 2 6855 7 chr7A.!!$F1 6853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 777 0.110486 AGGACCGGCTTGTTTCATGT 59.890 50.000 0.00 0.00 0.00 3.21 F
2159 3919 0.032130 ATGCTCATACGCACCTACCG 59.968 55.000 0.00 0.00 43.61 4.02 F
2506 4270 0.107643 GCACCTCCCTAAGCATCTCC 59.892 60.000 0.00 0.00 0.00 3.71 F
2508 4272 0.343372 ACCTCCCTAAGCATCTCCCA 59.657 55.000 0.00 0.00 0.00 4.37 F
2509 4273 1.061033 ACCTCCCTAAGCATCTCCCAT 60.061 52.381 0.00 0.00 0.00 4.00 F
2651 4416 1.286248 CCTGTAGGTGTTAAGGGCCT 58.714 55.000 0.00 0.00 36.47 5.19 F
3391 5161 2.288961 ACCATTCGTTACTACAGCGG 57.711 50.000 0.00 0.00 0.00 5.52 F
4375 6145 2.564947 CTCAGAAGTAAGGACTGGCAGT 59.435 50.000 22.26 22.26 35.52 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 4217 0.040425 CGGTTTTTCTGAAGCACCGG 60.040 55.000 24.20 0.00 45.44 5.28 R
3428 5198 1.416243 AGTGTGTCAGGGTTTCGGTA 58.584 50.000 0.00 0.00 0.00 4.02 R
4309 6079 2.948979 CTGGTGTTTTGGTTCTACTGCA 59.051 45.455 0.00 0.00 0.00 4.41 R
4323 6093 3.317993 GTGTAGGCAATGTTTCTGGTGTT 59.682 43.478 0.00 0.00 0.00 3.32 R
4375 6145 8.373048 ACTGACAGTTTTGTATACATCGAAAA 57.627 30.769 6.36 1.36 37.76 2.29 R
4485 6258 9.593134 GGCAAAATGTATGGATGTTTGTTAATA 57.407 29.630 0.00 0.00 32.89 0.98 R
5050 6823 3.991121 GCGGAGAAACTATTAGCTCATCC 59.009 47.826 0.00 0.00 0.00 3.51 R
6061 8078 0.813610 TTGGTATGCGATCAAGGCGG 60.814 55.000 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.082366 GTCCAAATTGCAGCGCACG 61.082 57.895 11.47 0.01 38.71 5.34
93 95 1.929806 GACCGTCGAAATTTGGGGGC 61.930 60.000 0.00 0.00 0.00 5.80
216 259 9.847224 AAAATAACGATTTACTAGATCATGGGT 57.153 29.630 0.00 0.00 34.01 4.51
217 260 8.833231 AATAACGATTTACTAGATCATGGGTG 57.167 34.615 0.00 0.00 0.00 4.61
218 261 4.632153 ACGATTTACTAGATCATGGGTGC 58.368 43.478 0.00 0.00 0.00 5.01
219 262 3.997021 CGATTTACTAGATCATGGGTGCC 59.003 47.826 0.00 0.00 0.00 5.01
220 263 3.469008 TTTACTAGATCATGGGTGCCG 57.531 47.619 0.00 0.00 0.00 5.69
221 264 0.679505 TACTAGATCATGGGTGCCGC 59.320 55.000 0.00 0.00 0.00 6.53
222 265 1.302033 CTAGATCATGGGTGCCGCC 60.302 63.158 0.00 0.00 0.00 6.13
266 310 9.167311 GATTGGATAGGCGTGATTATTAATCTT 57.833 33.333 15.57 2.27 38.72 2.40
296 340 2.595463 GTGCTTGGGTGCTGCTGA 60.595 61.111 0.00 0.00 0.00 4.26
300 347 1.490069 TGCTTGGGTGCTGCTGATATA 59.510 47.619 0.00 0.00 0.00 0.86
334 381 2.524394 TGCCTCCCCTAGATCGGC 60.524 66.667 0.00 0.00 36.55 5.54
338 385 1.228306 CTCCCCTAGATCGGCGACT 60.228 63.158 13.76 14.25 0.00 4.18
397 444 2.997986 CAGGAATGTGATGCCTTTTTGC 59.002 45.455 0.00 0.00 0.00 3.68
419 466 1.933247 CTCCTTCGATGCTCAAGACC 58.067 55.000 0.00 0.00 0.00 3.85
443 490 7.382218 ACCAGAATTTCAATCAAATCAAACGTC 59.618 33.333 0.00 0.00 33.16 4.34
463 510 7.146368 ACGTCGATAATATTCTTTTCACGAC 57.854 36.000 0.00 0.00 42.21 4.34
518 777 0.110486 AGGACCGGCTTGTTTCATGT 59.890 50.000 0.00 0.00 0.00 3.21
544 803 2.164624 ACGTGTTCTAGCTCTCATGGAC 59.835 50.000 0.00 0.00 0.00 4.02
545 804 2.164422 CGTGTTCTAGCTCTCATGGACA 59.836 50.000 0.00 0.00 0.00 4.02
566 825 7.527084 GACAGTATCCAAATATCGCTTATCC 57.473 40.000 0.00 0.00 0.00 2.59
635 1746 7.524717 AGGCATATTGTTTATCCGCTTAAAT 57.475 32.000 0.00 0.00 0.00 1.40
637 1748 8.512138 AGGCATATTGTTTATCCGCTTAAATAC 58.488 33.333 0.00 0.00 0.00 1.89
644 1755 8.829514 TGTTTATCCGCTTAAATACATTTTCG 57.170 30.769 0.00 0.00 0.00 3.46
662 1773 2.950433 TCGAGCGTCGTTAAGGATTTT 58.050 42.857 0.50 0.00 41.35 1.82
707 1826 8.998558 AAAAACAGCATAAACTTTACGACTAC 57.001 30.769 0.00 0.00 0.00 2.73
708 1827 7.958053 AAACAGCATAAACTTTACGACTACT 57.042 32.000 0.00 0.00 0.00 2.57
710 1829 9.649167 AAACAGCATAAACTTTACGACTACTAT 57.351 29.630 0.00 0.00 0.00 2.12
711 1830 8.853469 ACAGCATAAACTTTACGACTACTATC 57.147 34.615 0.00 0.00 0.00 2.08
712 1831 8.464404 ACAGCATAAACTTTACGACTACTATCA 58.536 33.333 0.00 0.00 0.00 2.15
715 1834 9.680315 GCATAAACTTTACGACTACTATCAGAT 57.320 33.333 0.00 0.00 0.00 2.90
722 1843 8.985315 TTTACGACTACTATCAGATAAGGGAA 57.015 34.615 0.00 0.00 0.00 3.97
745 1866 1.134226 CTGAACCACCGAACACGTAC 58.866 55.000 0.00 0.00 0.00 3.67
787 2274 4.460382 CACCCATGGATTATTATGTGCTCC 59.540 45.833 15.22 0.00 0.00 4.70
789 2276 5.222400 ACCCATGGATTATTATGTGCTCCAT 60.222 40.000 15.22 0.00 45.35 3.41
811 2298 2.870372 GATTCAGCGCGGCAAAGT 59.130 55.556 8.83 0.00 0.00 2.66
834 2321 0.733909 CGCTGATGACTGTTCGCTCA 60.734 55.000 0.00 0.00 0.00 4.26
856 2343 2.780643 CATCACTGGCGCGACTTG 59.219 61.111 15.80 11.09 0.00 3.16
898 2385 4.019174 ACAATGATTTCCGCTTCTTCCAT 58.981 39.130 0.00 0.00 0.00 3.41
929 2422 2.550180 GCTCTCCAGAAACAGAAACACC 59.450 50.000 0.00 0.00 0.00 4.16
935 2428 5.801380 TCCAGAAACAGAAACACCCTATAC 58.199 41.667 0.00 0.00 0.00 1.47
983 2476 2.802816 CACACGGAGAGAAAGAAACCAG 59.197 50.000 0.00 0.00 0.00 4.00
984 2477 2.698797 ACACGGAGAGAAAGAAACCAGA 59.301 45.455 0.00 0.00 0.00 3.86
985 2478 3.243907 ACACGGAGAGAAAGAAACCAGAG 60.244 47.826 0.00 0.00 0.00 3.35
993 2486 1.718280 AAGAAACCAGAGGAGGACGT 58.282 50.000 0.00 0.00 0.00 4.34
1070 2575 1.502163 GCGAATCCAGGCAAGATCGG 61.502 60.000 0.00 0.00 0.00 4.18
1071 2576 0.882042 CGAATCCAGGCAAGATCGGG 60.882 60.000 0.00 0.00 0.00 5.14
1163 2683 2.038426 TCTGGAGATTGCTGGAACGAAA 59.962 45.455 0.00 0.00 0.00 3.46
1170 2690 4.932200 AGATTGCTGGAACGAAAGAGTTAG 59.068 41.667 0.00 0.00 34.00 2.34
1183 2703 4.815533 AAGAGTTAGAAGCTCTGATGCA 57.184 40.909 0.00 0.00 41.96 3.96
1292 2812 2.575532 CAGGTCCTTGTTTCTGCTCAA 58.424 47.619 0.00 0.00 0.00 3.02
1294 2814 2.439507 AGGTCCTTGTTTCTGCTCAAGA 59.560 45.455 6.50 0.00 42.22 3.02
1295 2815 3.073650 AGGTCCTTGTTTCTGCTCAAGAT 59.926 43.478 6.50 0.00 42.22 2.40
1298 2818 4.067896 TCCTTGTTTCTGCTCAAGATCAC 58.932 43.478 6.50 0.00 42.22 3.06
1299 2819 3.817084 CCTTGTTTCTGCTCAAGATCACA 59.183 43.478 6.50 0.00 42.22 3.58
1300 2820 4.320057 CCTTGTTTCTGCTCAAGATCACAC 60.320 45.833 6.50 0.00 42.22 3.82
1301 2821 3.807553 TGTTTCTGCTCAAGATCACACA 58.192 40.909 0.00 0.00 33.93 3.72
1303 2823 3.473923 TTCTGCTCAAGATCACACACA 57.526 42.857 0.00 0.00 33.93 3.72
1304 2824 2.759191 TCTGCTCAAGATCACACACAC 58.241 47.619 0.00 0.00 0.00 3.82
1305 2825 2.102925 TCTGCTCAAGATCACACACACA 59.897 45.455 0.00 0.00 0.00 3.72
1306 2826 2.212652 TGCTCAAGATCACACACACAC 58.787 47.619 0.00 0.00 0.00 3.82
1307 2827 2.212652 GCTCAAGATCACACACACACA 58.787 47.619 0.00 0.00 0.00 3.72
1309 2829 3.197265 CTCAAGATCACACACACACACA 58.803 45.455 0.00 0.00 0.00 3.72
1310 2830 2.935849 TCAAGATCACACACACACACAC 59.064 45.455 0.00 0.00 0.00 3.82
1311 2831 2.677337 CAAGATCACACACACACACACA 59.323 45.455 0.00 0.00 0.00 3.72
1314 2834 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
1315 2835 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1317 2837 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1318 2838 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1320 2840 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1322 2842 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1324 2844 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1326 2846 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1328 2848 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1330 2850 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1332 2852 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1334 2854 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1335 2855 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1468 3072 0.182537 TACCAGGGTACATGGCATGC 59.817 55.000 26.70 9.90 41.87 4.06
1501 3106 8.598924 TCGTAATTTACAAAGTAAACGTCACAA 58.401 29.630 7.31 0.00 0.00 3.33
1510 3115 3.692593 AGTAAACGTCACAACTTGCCTTT 59.307 39.130 0.00 0.00 0.00 3.11
1525 3130 0.613777 CCTTTTGGACGTAGCCTCCT 59.386 55.000 0.00 0.00 44.07 3.69
1526 3131 1.003233 CCTTTTGGACGTAGCCTCCTT 59.997 52.381 0.00 0.00 44.07 3.36
1527 3132 2.347731 CTTTTGGACGTAGCCTCCTTC 58.652 52.381 0.00 0.00 0.00 3.46
1529 3134 1.262640 TTGGACGTAGCCTCCTTCCC 61.263 60.000 0.00 0.00 0.00 3.97
1530 3135 1.684734 GGACGTAGCCTCCTTCCCA 60.685 63.158 0.00 0.00 0.00 4.37
1531 3136 1.677637 GGACGTAGCCTCCTTCCCAG 61.678 65.000 0.00 0.00 0.00 4.45
1532 3137 1.677637 GACGTAGCCTCCTTCCCAGG 61.678 65.000 0.00 0.00 42.50 4.45
1571 3176 3.255642 GGGCTAGCACACAAAATGAAGAA 59.744 43.478 18.24 0.00 0.00 2.52
1587 3192 8.622948 AAATGAAGAACTTCTAATCCTTTCGT 57.377 30.769 14.31 0.00 40.14 3.85
1588 3193 8.622948 AATGAAGAACTTCTAATCCTTTCGTT 57.377 30.769 14.31 0.00 40.14 3.85
1591 3196 6.110411 AGAACTTCTAATCCTTTCGTTCCA 57.890 37.500 0.00 0.00 32.06 3.53
1594 3199 6.600882 ACTTCTAATCCTTTCGTTCCAGTA 57.399 37.500 0.00 0.00 0.00 2.74
1599 3204 7.542025 TCTAATCCTTTCGTTCCAGTACTAAC 58.458 38.462 0.00 0.00 0.00 2.34
1612 3220 7.876936 TCCAGTACTAACGAGAAGTATGAAT 57.123 36.000 0.00 0.00 32.34 2.57
1614 3222 9.399797 TCCAGTACTAACGAGAAGTATGAATAA 57.600 33.333 0.00 0.00 32.34 1.40
1651 3259 7.674471 AAGTAAACATAAAACTGAGAGAGGC 57.326 36.000 0.00 0.00 0.00 4.70
1672 3280 7.667219 AGAGGCTAATCACTTGAAATTTCTCAA 59.333 33.333 18.64 6.11 34.22 3.02
1674 3282 8.641541 AGGCTAATCACTTGAAATTTCTCAAAA 58.358 29.630 18.64 4.37 34.96 2.44
1676 3284 8.919661 GCTAATCACTTGAAATTTCTCAAAAGG 58.080 33.333 18.64 8.32 34.96 3.11
1681 3289 9.369904 TCACTTGAAATTTCTCAAAAGGAAAAG 57.630 29.630 18.64 11.58 36.47 2.27
1682 3290 8.118607 CACTTGAAATTTCTCAAAAGGAAAAGC 58.881 33.333 18.64 0.00 36.47 3.51
1693 3342 6.377780 TCAAAAGGAAAAGCAAAAACAAAGC 58.622 32.000 0.00 0.00 0.00 3.51
1701 3350 1.267483 GCAAAAACAAAGCACTTGCCG 60.267 47.619 0.00 0.00 43.38 5.69
1712 3361 2.262915 CTTGCCGCTCGACTTCCT 59.737 61.111 0.00 0.00 0.00 3.36
1733 3382 7.225784 TCCTAACAAGCAAGCAAAAATGATA 57.774 32.000 0.00 0.00 0.00 2.15
1765 3414 8.223769 CGAATGAACAAGCACATATAATCTACC 58.776 37.037 0.00 0.00 0.00 3.18
1766 3415 8.978874 AATGAACAAGCACATATAATCTACCA 57.021 30.769 0.00 0.00 0.00 3.25
1767 3416 7.786178 TGAACAAGCACATATAATCTACCAC 57.214 36.000 0.00 0.00 0.00 4.16
1768 3417 6.765989 TGAACAAGCACATATAATCTACCACC 59.234 38.462 0.00 0.00 0.00 4.61
1769 3418 6.500589 ACAAGCACATATAATCTACCACCT 57.499 37.500 0.00 0.00 0.00 4.00
1770 3419 6.525629 ACAAGCACATATAATCTACCACCTC 58.474 40.000 0.00 0.00 0.00 3.85
1771 3420 6.327626 ACAAGCACATATAATCTACCACCTCT 59.672 38.462 0.00 0.00 0.00 3.69
1772 3421 6.352016 AGCACATATAATCTACCACCTCTG 57.648 41.667 0.00 0.00 0.00 3.35
1773 3422 4.932200 GCACATATAATCTACCACCTCTGC 59.068 45.833 0.00 0.00 0.00 4.26
1774 3423 5.511373 GCACATATAATCTACCACCTCTGCA 60.511 44.000 0.00 0.00 0.00 4.41
1775 3424 5.928839 CACATATAATCTACCACCTCTGCAC 59.071 44.000 0.00 0.00 0.00 4.57
1776 3425 5.012148 ACATATAATCTACCACCTCTGCACC 59.988 44.000 0.00 0.00 0.00 5.01
1777 3426 1.656587 AATCTACCACCTCTGCACCA 58.343 50.000 0.00 0.00 0.00 4.17
1778 3427 1.656587 ATCTACCACCTCTGCACCAA 58.343 50.000 0.00 0.00 0.00 3.67
1779 3428 1.429930 TCTACCACCTCTGCACCAAA 58.570 50.000 0.00 0.00 0.00 3.28
1780 3429 1.771854 TCTACCACCTCTGCACCAAAA 59.228 47.619 0.00 0.00 0.00 2.44
1781 3430 2.375174 TCTACCACCTCTGCACCAAAAT 59.625 45.455 0.00 0.00 0.00 1.82
1782 3431 2.969821 ACCACCTCTGCACCAAAATA 57.030 45.000 0.00 0.00 0.00 1.40
1783 3432 3.456380 ACCACCTCTGCACCAAAATAT 57.544 42.857 0.00 0.00 0.00 1.28
1784 3433 4.584638 ACCACCTCTGCACCAAAATATA 57.415 40.909 0.00 0.00 0.00 0.86
1785 3434 4.929479 ACCACCTCTGCACCAAAATATAA 58.071 39.130 0.00 0.00 0.00 0.98
1786 3435 4.949856 ACCACCTCTGCACCAAAATATAAG 59.050 41.667 0.00 0.00 0.00 1.73
1787 3436 5.192927 CCACCTCTGCACCAAAATATAAGA 58.807 41.667 0.00 0.00 0.00 2.10
1788 3437 5.066505 CCACCTCTGCACCAAAATATAAGAC 59.933 44.000 0.00 0.00 0.00 3.01
1789 3438 4.876107 ACCTCTGCACCAAAATATAAGACG 59.124 41.667 0.00 0.00 0.00 4.18
1790 3439 4.876107 CCTCTGCACCAAAATATAAGACGT 59.124 41.667 0.00 0.00 0.00 4.34
1791 3440 5.354234 CCTCTGCACCAAAATATAAGACGTT 59.646 40.000 0.00 0.00 0.00 3.99
1792 3441 6.128007 CCTCTGCACCAAAATATAAGACGTTT 60.128 38.462 0.00 0.00 0.00 3.60
1793 3442 7.209471 TCTGCACCAAAATATAAGACGTTTT 57.791 32.000 0.00 0.00 0.00 2.43
1794 3443 7.653647 TCTGCACCAAAATATAAGACGTTTTT 58.346 30.769 0.00 0.00 0.00 1.94
1795 3444 7.593273 TCTGCACCAAAATATAAGACGTTTTTG 59.407 33.333 11.96 11.96 38.28 2.44
1796 3445 7.203910 TGCACCAAAATATAAGACGTTTTTGT 58.796 30.769 15.79 4.75 37.36 2.83
1797 3446 7.707035 TGCACCAAAATATAAGACGTTTTTGTT 59.293 29.630 15.79 3.49 37.36 2.83
1798 3447 9.182933 GCACCAAAATATAAGACGTTTTTGTTA 57.817 29.630 15.79 1.01 37.36 2.41
1800 3449 9.401873 ACCAAAATATAAGACGTTTTTGTTAGC 57.598 29.630 15.79 0.00 37.36 3.09
1801 3450 9.620660 CCAAAATATAAGACGTTTTTGTTAGCT 57.379 29.630 15.79 0.00 37.36 3.32
1809 3458 8.429493 AAGACGTTTTTGTTAGCTAAACTAGT 57.571 30.769 7.99 2.63 38.99 2.57
1810 3459 8.070007 AGACGTTTTTGTTAGCTAAACTAGTC 57.930 34.615 7.99 11.07 38.99 2.59
1811 3460 7.924947 AGACGTTTTTGTTAGCTAAACTAGTCT 59.075 33.333 7.99 12.90 38.99 3.24
1812 3461 9.185192 GACGTTTTTGTTAGCTAAACTAGTCTA 57.815 33.333 7.99 0.00 38.99 2.59
1813 3462 8.972349 ACGTTTTTGTTAGCTAAACTAGTCTAC 58.028 33.333 7.99 0.00 38.99 2.59
1814 3463 8.152159 CGTTTTTGTTAGCTAAACTAGTCTACG 58.848 37.037 7.99 7.33 38.99 3.51
1815 3464 9.185192 GTTTTTGTTAGCTAAACTAGTCTACGA 57.815 33.333 7.99 0.00 38.99 3.43
1816 3465 9.748708 TTTTTGTTAGCTAAACTAGTCTACGAA 57.251 29.630 7.99 0.00 38.99 3.85
1817 3466 9.748708 TTTTGTTAGCTAAACTAGTCTACGAAA 57.251 29.630 7.99 3.02 38.99 3.46
1818 3467 9.748708 TTTGTTAGCTAAACTAGTCTACGAAAA 57.251 29.630 7.99 0.00 38.99 2.29
1819 3468 8.733857 TGTTAGCTAAACTAGTCTACGAAAAC 57.266 34.615 7.99 0.00 38.99 2.43
1820 3469 7.535258 TGTTAGCTAAACTAGTCTACGAAAACG 59.465 37.037 7.99 0.00 38.99 3.60
1821 3470 4.855937 AGCTAAACTAGTCTACGAAAACGC 59.144 41.667 0.00 0.00 0.00 4.84
1822 3471 4.031089 GCTAAACTAGTCTACGAAAACGCC 59.969 45.833 0.00 0.00 0.00 5.68
1823 3472 3.930634 AACTAGTCTACGAAAACGCCT 57.069 42.857 0.00 0.00 0.00 5.52
1824 3473 3.930634 ACTAGTCTACGAAAACGCCTT 57.069 42.857 0.00 0.00 0.00 4.35
1825 3474 3.572584 ACTAGTCTACGAAAACGCCTTG 58.427 45.455 0.00 0.00 0.00 3.61
1826 3475 2.521105 AGTCTACGAAAACGCCTTGT 57.479 45.000 0.00 0.00 0.00 3.16
1827 3476 3.648339 AGTCTACGAAAACGCCTTGTA 57.352 42.857 0.00 0.00 0.00 2.41
1828 3477 4.184079 AGTCTACGAAAACGCCTTGTAT 57.816 40.909 0.00 0.00 0.00 2.29
1829 3478 4.563061 AGTCTACGAAAACGCCTTGTATT 58.437 39.130 0.00 0.00 0.00 1.89
1830 3479 4.992951 AGTCTACGAAAACGCCTTGTATTT 59.007 37.500 0.00 0.00 0.00 1.40
1831 3480 5.467735 AGTCTACGAAAACGCCTTGTATTTT 59.532 36.000 0.00 0.00 0.00 1.82
1832 3481 5.562623 GTCTACGAAAACGCCTTGTATTTTG 59.437 40.000 0.00 0.00 0.00 2.44
1833 3482 3.634283 ACGAAAACGCCTTGTATTTTGG 58.366 40.909 0.00 0.00 0.00 3.28
1834 3483 3.067040 ACGAAAACGCCTTGTATTTTGGT 59.933 39.130 0.00 0.00 31.83 3.67
1835 3484 4.275443 ACGAAAACGCCTTGTATTTTGGTA 59.725 37.500 0.00 0.00 34.00 3.25
1836 3485 4.613866 CGAAAACGCCTTGTATTTTGGTAC 59.386 41.667 0.00 0.00 0.00 3.34
1837 3486 3.817148 AACGCCTTGTATTTTGGTACG 57.183 42.857 0.00 0.00 0.00 3.67
1838 3487 2.078392 ACGCCTTGTATTTTGGTACGG 58.922 47.619 0.00 0.00 0.00 4.02
1839 3488 2.289569 ACGCCTTGTATTTTGGTACGGA 60.290 45.455 0.00 0.00 0.00 4.69
1840 3489 2.940410 CGCCTTGTATTTTGGTACGGAT 59.060 45.455 0.00 0.00 0.00 4.18
1841 3490 3.242608 CGCCTTGTATTTTGGTACGGATG 60.243 47.826 0.00 0.00 0.00 3.51
1842 3491 3.066203 GCCTTGTATTTTGGTACGGATGG 59.934 47.826 0.00 0.00 0.00 3.51
1843 3492 4.519213 CCTTGTATTTTGGTACGGATGGA 58.481 43.478 0.00 0.00 0.00 3.41
1844 3493 4.574828 CCTTGTATTTTGGTACGGATGGAG 59.425 45.833 0.00 0.00 0.00 3.86
1845 3494 4.829872 TGTATTTTGGTACGGATGGAGT 57.170 40.909 0.00 0.00 0.00 3.85
1846 3495 5.936187 TGTATTTTGGTACGGATGGAGTA 57.064 39.130 0.00 0.00 0.00 2.59
1847 3496 5.663456 TGTATTTTGGTACGGATGGAGTAC 58.337 41.667 0.00 0.00 42.58 2.73
1852 3501 3.638860 TGGTACGGATGGAGTACTGATT 58.361 45.455 0.00 0.00 42.81 2.57
1864 3513 7.043961 TGGAGTACTGATTTCTACTAGCATG 57.956 40.000 0.00 0.00 0.00 4.06
1868 3517 7.942990 AGTACTGATTTCTACTAGCATGGTAC 58.057 38.462 0.00 0.00 0.00 3.34
1909 3658 8.740123 TGGTTCAGTTCACTACATTAAAGAAA 57.260 30.769 0.00 0.00 0.00 2.52
2000 3758 9.479549 ACATGTGGACCTGATTTATAGAATTTT 57.520 29.630 0.00 0.00 0.00 1.82
2125 3884 4.040217 AGAAAGGTCATAGGCTCATAGCTG 59.960 45.833 0.00 0.00 41.99 4.24
2137 3896 1.919654 TCATAGCTGGTAAAGGGGCAA 59.080 47.619 0.00 0.00 0.00 4.52
2159 3919 0.032130 ATGCTCATACGCACCTACCG 59.968 55.000 0.00 0.00 43.61 4.02
2183 3944 3.169355 AGCACAGCAAAAGACAAAAGG 57.831 42.857 0.00 0.00 0.00 3.11
2260 4023 3.439825 TCGTACGCCATACTTCAGTTACA 59.560 43.478 11.24 0.00 0.00 2.41
2287 4050 9.219603 TCATGTGAAAATACCAACAAACAAAAA 57.780 25.926 0.00 0.00 0.00 1.94
2325 4089 2.959484 GCTCACTGCTGTGCCCCTA 61.959 63.158 18.11 0.68 43.49 3.53
2326 4090 1.679311 CTCACTGCTGTGCCCCTAA 59.321 57.895 18.11 0.00 43.49 2.69
2327 4091 0.392193 CTCACTGCTGTGCCCCTAAG 60.392 60.000 18.11 6.21 43.49 2.18
2328 4092 1.377725 CACTGCTGTGCCCCTAAGG 60.378 63.158 11.01 0.00 37.38 2.69
2340 4104 2.654863 CCCCTAAGGCCTTGTACAATG 58.345 52.381 28.77 7.68 0.00 2.82
2341 4105 2.654863 CCCTAAGGCCTTGTACAATGG 58.345 52.381 28.77 16.06 0.00 3.16
2342 4106 2.654863 CCTAAGGCCTTGTACAATGGG 58.345 52.381 28.77 7.36 0.00 4.00
2343 4107 2.241176 CCTAAGGCCTTGTACAATGGGA 59.759 50.000 28.77 2.40 0.00 4.37
2344 4108 2.514458 AAGGCCTTGTACAATGGGAG 57.486 50.000 19.73 1.65 0.00 4.30
2345 4109 1.668826 AGGCCTTGTACAATGGGAGA 58.331 50.000 16.08 0.00 0.00 3.71
2346 4110 2.208872 AGGCCTTGTACAATGGGAGAT 58.791 47.619 16.08 0.53 0.00 2.75
2347 4111 2.092212 AGGCCTTGTACAATGGGAGATG 60.092 50.000 16.08 0.00 0.00 2.90
2348 4112 1.678101 GCCTTGTACAATGGGAGATGC 59.322 52.381 16.08 3.76 0.00 3.91
2349 4113 2.684927 GCCTTGTACAATGGGAGATGCT 60.685 50.000 16.08 0.00 0.00 3.79
2350 4114 3.624777 CCTTGTACAATGGGAGATGCTT 58.375 45.455 9.13 0.00 0.00 3.91
2351 4115 4.780815 CCTTGTACAATGGGAGATGCTTA 58.219 43.478 9.13 0.00 0.00 3.09
2352 4116 4.818546 CCTTGTACAATGGGAGATGCTTAG 59.181 45.833 9.13 0.00 0.00 2.18
2353 4117 4.422073 TGTACAATGGGAGATGCTTAGG 57.578 45.455 0.00 0.00 0.00 2.69
2354 4118 4.037222 TGTACAATGGGAGATGCTTAGGA 58.963 43.478 0.00 0.00 0.00 2.94
2355 4119 3.853355 ACAATGGGAGATGCTTAGGAG 57.147 47.619 0.00 0.00 0.00 3.69
2356 4120 3.387962 ACAATGGGAGATGCTTAGGAGA 58.612 45.455 0.00 0.00 0.00 3.71
2357 4121 3.390639 ACAATGGGAGATGCTTAGGAGAG 59.609 47.826 0.00 0.00 0.00 3.20
2358 4122 2.094100 TGGGAGATGCTTAGGAGAGG 57.906 55.000 0.00 0.00 0.00 3.69
2359 4123 1.292242 TGGGAGATGCTTAGGAGAGGT 59.708 52.381 0.00 0.00 0.00 3.85
2360 4124 1.691434 GGGAGATGCTTAGGAGAGGTG 59.309 57.143 0.00 0.00 0.00 4.00
2361 4125 1.069978 GGAGATGCTTAGGAGAGGTGC 59.930 57.143 0.00 0.00 0.00 5.01
2362 4126 2.038659 GAGATGCTTAGGAGAGGTGCT 58.961 52.381 0.00 0.00 0.00 4.40
2363 4127 2.433970 GAGATGCTTAGGAGAGGTGCTT 59.566 50.000 0.00 0.00 0.00 3.91
2364 4128 3.639094 GAGATGCTTAGGAGAGGTGCTTA 59.361 47.826 0.00 0.00 0.00 3.09
2365 4129 3.640967 AGATGCTTAGGAGAGGTGCTTAG 59.359 47.826 0.00 0.00 0.00 2.18
2366 4130 3.101643 TGCTTAGGAGAGGTGCTTAGA 57.898 47.619 0.00 0.00 0.00 2.10
2367 4131 3.027412 TGCTTAGGAGAGGTGCTTAGAG 58.973 50.000 0.00 0.00 0.00 2.43
2368 4132 3.292460 GCTTAGGAGAGGTGCTTAGAGA 58.708 50.000 0.00 0.00 0.00 3.10
2369 4133 3.702045 GCTTAGGAGAGGTGCTTAGAGAA 59.298 47.826 0.00 0.00 0.00 2.87
2370 4134 4.160626 GCTTAGGAGAGGTGCTTAGAGAAA 59.839 45.833 0.00 0.00 0.00 2.52
2371 4135 5.163353 GCTTAGGAGAGGTGCTTAGAGAAAT 60.163 44.000 0.00 0.00 0.00 2.17
2372 4136 6.041069 GCTTAGGAGAGGTGCTTAGAGAAATA 59.959 42.308 0.00 0.00 0.00 1.40
2373 4137 7.418025 GCTTAGGAGAGGTGCTTAGAGAAATAA 60.418 40.741 0.00 0.00 0.00 1.40
2374 4138 6.875972 AGGAGAGGTGCTTAGAGAAATAAA 57.124 37.500 0.00 0.00 0.00 1.40
2375 4139 6.645306 AGGAGAGGTGCTTAGAGAAATAAAC 58.355 40.000 0.00 0.00 0.00 2.01
2376 4140 5.818336 GGAGAGGTGCTTAGAGAAATAAACC 59.182 44.000 0.00 0.00 0.00 3.27
2377 4141 6.374417 AGAGGTGCTTAGAGAAATAAACCA 57.626 37.500 0.00 0.00 0.00 3.67
2378 4142 6.410540 AGAGGTGCTTAGAGAAATAAACCAG 58.589 40.000 0.00 0.00 0.00 4.00
2379 4143 5.501156 AGGTGCTTAGAGAAATAAACCAGG 58.499 41.667 0.00 0.00 0.00 4.45
2380 4144 5.250774 AGGTGCTTAGAGAAATAAACCAGGA 59.749 40.000 0.00 0.00 0.00 3.86
2381 4145 6.069381 AGGTGCTTAGAGAAATAAACCAGGAT 60.069 38.462 0.00 0.00 0.00 3.24
2382 4146 6.603599 GGTGCTTAGAGAAATAAACCAGGATT 59.396 38.462 0.00 0.00 0.00 3.01
2383 4147 7.122799 GGTGCTTAGAGAAATAAACCAGGATTT 59.877 37.037 0.00 0.00 0.00 2.17
2384 4148 8.184848 GTGCTTAGAGAAATAAACCAGGATTTC 58.815 37.037 0.00 0.00 40.74 2.17
2385 4149 7.339466 TGCTTAGAGAAATAAACCAGGATTTCC 59.661 37.037 8.01 0.00 41.15 3.13
2387 4151 9.467796 CTTAGAGAAATAAACCAGGATTTCCTT 57.532 33.333 8.01 1.85 46.09 3.36
2388 4152 7.709149 AGAGAAATAAACCAGGATTTCCTTG 57.291 36.000 8.01 0.00 46.09 3.61
2389 4153 7.470192 AGAGAAATAAACCAGGATTTCCTTGA 58.530 34.615 4.79 0.00 46.09 3.02
2390 4154 7.613411 AGAGAAATAAACCAGGATTTCCTTGAG 59.387 37.037 4.79 0.00 46.09 3.02
2391 4155 5.921962 AATAAACCAGGATTTCCTTGAGC 57.078 39.130 4.79 0.00 46.09 4.26
2392 4156 2.978156 AACCAGGATTTCCTTGAGCA 57.022 45.000 4.79 0.00 46.09 4.26
2393 4157 2.206576 ACCAGGATTTCCTTGAGCAC 57.793 50.000 4.79 0.00 46.09 4.40
2394 4158 1.272147 ACCAGGATTTCCTTGAGCACC 60.272 52.381 4.79 0.00 46.09 5.01
2395 4159 1.272092 CCAGGATTTCCTTGAGCACCA 60.272 52.381 0.00 0.00 46.09 4.17
2396 4160 2.089980 CAGGATTTCCTTGAGCACCAG 58.910 52.381 0.00 0.00 46.09 4.00
2397 4161 1.707427 AGGATTTCCTTGAGCACCAGT 59.293 47.619 0.00 0.00 46.09 4.00
2398 4162 1.815003 GGATTTCCTTGAGCACCAGTG 59.185 52.381 0.00 0.00 0.00 3.66
2412 4176 4.685169 CACCAGTGCTTATTTGTACAGG 57.315 45.455 0.00 0.00 35.86 4.00
2413 4177 3.440173 CACCAGTGCTTATTTGTACAGGG 59.560 47.826 0.00 0.00 34.53 4.45
2414 4178 3.073946 ACCAGTGCTTATTTGTACAGGGT 59.926 43.478 0.00 0.00 34.53 4.34
2415 4179 4.287585 ACCAGTGCTTATTTGTACAGGGTA 59.712 41.667 0.00 0.00 34.53 3.69
2416 4180 4.876107 CCAGTGCTTATTTGTACAGGGTAG 59.124 45.833 0.00 0.00 0.00 3.18
2417 4181 5.338056 CCAGTGCTTATTTGTACAGGGTAGA 60.338 44.000 0.00 0.00 0.00 2.59
2418 4182 5.581085 CAGTGCTTATTTGTACAGGGTAGAC 59.419 44.000 0.00 0.00 0.00 2.59
2419 4183 4.565564 GTGCTTATTTGTACAGGGTAGACG 59.434 45.833 0.00 0.00 0.00 4.18
2420 4184 3.554731 GCTTATTTGTACAGGGTAGACGC 59.445 47.826 0.00 0.00 0.00 5.19
2421 4185 4.679905 GCTTATTTGTACAGGGTAGACGCT 60.680 45.833 0.00 0.00 39.95 5.07
2422 4186 3.975168 ATTTGTACAGGGTAGACGCTT 57.025 42.857 0.00 0.00 37.00 4.68
2423 4187 6.528537 TTATTTGTACAGGGTAGACGCTTA 57.471 37.500 0.00 0.00 37.00 3.09
2424 4188 4.870123 TTTGTACAGGGTAGACGCTTAA 57.130 40.909 0.00 0.00 37.00 1.85
2425 4189 3.855689 TGTACAGGGTAGACGCTTAAC 57.144 47.619 0.00 0.00 37.00 2.01
2426 4190 3.424703 TGTACAGGGTAGACGCTTAACT 58.575 45.455 0.00 0.00 37.00 2.24
2427 4191 4.588899 TGTACAGGGTAGACGCTTAACTA 58.411 43.478 0.00 0.00 37.00 2.24
2428 4192 5.009631 TGTACAGGGTAGACGCTTAACTAA 58.990 41.667 0.00 0.00 37.00 2.24
2429 4193 4.715527 ACAGGGTAGACGCTTAACTAAG 57.284 45.455 0.00 0.00 37.00 2.18
2450 4214 9.005777 ACTAAGCGTCTCTTCTATAGAAATAGG 57.994 37.037 15.85 10.43 36.49 2.57
2451 4215 7.826918 AAGCGTCTCTTCTATAGAAATAGGT 57.173 36.000 15.85 8.69 36.49 3.08
2452 4216 8.921353 AAGCGTCTCTTCTATAGAAATAGGTA 57.079 34.615 15.85 0.57 36.49 3.08
2453 4217 8.326680 AGCGTCTCTTCTATAGAAATAGGTAC 57.673 38.462 15.85 10.07 36.49 3.34
2454 4218 7.391275 AGCGTCTCTTCTATAGAAATAGGTACC 59.609 40.741 15.85 2.73 36.49 3.34
2455 4219 7.623925 GCGTCTCTTCTATAGAAATAGGTACCG 60.624 44.444 15.85 14.75 36.49 4.02
2456 4220 7.148440 CGTCTCTTCTATAGAAATAGGTACCGG 60.148 44.444 15.85 0.00 36.49 5.28
2457 4221 7.665145 GTCTCTTCTATAGAAATAGGTACCGGT 59.335 40.741 13.98 13.98 36.49 5.28
2458 4222 7.664731 TCTCTTCTATAGAAATAGGTACCGGTG 59.335 40.741 19.93 0.00 36.49 4.94
2459 4223 5.972107 TCTATAGAAATAGGTACCGGTGC 57.028 43.478 19.93 17.43 36.49 5.01
2460 4224 5.638133 TCTATAGAAATAGGTACCGGTGCT 58.362 41.667 22.50 10.83 36.49 4.40
2461 4225 6.073314 TCTATAGAAATAGGTACCGGTGCTT 58.927 40.000 22.50 17.73 36.49 3.91
2462 4226 3.538634 AGAAATAGGTACCGGTGCTTC 57.461 47.619 22.50 16.89 0.00 3.86
2463 4227 2.835764 AGAAATAGGTACCGGTGCTTCA 59.164 45.455 22.50 8.15 0.00 3.02
2464 4228 2.981859 AATAGGTACCGGTGCTTCAG 57.018 50.000 22.50 0.00 0.00 3.02
2465 4229 2.154567 ATAGGTACCGGTGCTTCAGA 57.845 50.000 22.50 0.00 0.00 3.27
2466 4230 1.927487 TAGGTACCGGTGCTTCAGAA 58.073 50.000 22.50 0.00 0.00 3.02
2467 4231 1.053424 AGGTACCGGTGCTTCAGAAA 58.947 50.000 22.50 0.00 0.00 2.52
2468 4232 1.418637 AGGTACCGGTGCTTCAGAAAA 59.581 47.619 22.50 0.00 0.00 2.29
2469 4233 2.158726 AGGTACCGGTGCTTCAGAAAAA 60.159 45.455 22.50 0.00 0.00 1.94
2470 4234 2.031420 GGTACCGGTGCTTCAGAAAAAC 60.031 50.000 22.50 4.88 0.00 2.43
2471 4235 1.029681 ACCGGTGCTTCAGAAAAACC 58.970 50.000 6.12 4.42 0.00 3.27
2472 4236 3.454941 CGGTGCTTCAGAAAAACCG 57.545 52.632 17.58 17.58 46.69 4.44
2473 4237 3.865700 GGTGCTTCAGAAAAACCGG 57.134 52.632 0.00 0.00 0.00 5.28
2474 4238 1.029681 GGTGCTTCAGAAAAACCGGT 58.970 50.000 0.00 0.00 0.00 5.28
2475 4239 1.407618 GGTGCTTCAGAAAAACCGGTT 59.592 47.619 15.86 15.86 0.00 4.44
2476 4240 2.159156 GGTGCTTCAGAAAAACCGGTTT 60.159 45.455 26.87 26.87 0.00 3.27
2477 4241 3.067040 GGTGCTTCAGAAAAACCGGTTTA 59.933 43.478 31.80 14.11 31.63 2.01
2478 4242 4.261867 GGTGCTTCAGAAAAACCGGTTTAT 60.262 41.667 31.80 18.22 31.63 1.40
2479 4243 5.286438 GTGCTTCAGAAAAACCGGTTTATT 58.714 37.500 31.80 25.02 31.63 1.40
2480 4244 5.751509 GTGCTTCAGAAAAACCGGTTTATTT 59.248 36.000 31.80 23.06 31.63 1.40
2481 4245 6.256975 GTGCTTCAGAAAAACCGGTTTATTTT 59.743 34.615 31.80 22.34 31.63 1.82
2482 4246 6.819146 TGCTTCAGAAAAACCGGTTTATTTTT 59.181 30.769 31.80 21.98 39.97 1.94
2489 4253 8.355272 GAAAAACCGGTTTATTTTTCTAAGCA 57.645 30.769 31.80 0.00 45.24 3.91
2490 4254 7.703298 AAAACCGGTTTATTTTTCTAAGCAC 57.297 32.000 31.80 0.00 31.63 4.40
2491 4255 5.381174 ACCGGTTTATTTTTCTAAGCACC 57.619 39.130 0.00 0.00 0.00 5.01
2492 4256 5.074804 ACCGGTTTATTTTTCTAAGCACCT 58.925 37.500 0.00 0.00 0.00 4.00
2493 4257 5.182570 ACCGGTTTATTTTTCTAAGCACCTC 59.817 40.000 0.00 0.00 0.00 3.85
2494 4258 5.392703 CCGGTTTATTTTTCTAAGCACCTCC 60.393 44.000 0.00 0.00 0.00 4.30
2495 4259 5.392703 CGGTTTATTTTTCTAAGCACCTCCC 60.393 44.000 0.00 0.00 0.00 4.30
2496 4260 5.715279 GGTTTATTTTTCTAAGCACCTCCCT 59.285 40.000 0.00 0.00 0.00 4.20
2497 4261 6.888088 GGTTTATTTTTCTAAGCACCTCCCTA 59.112 38.462 0.00 0.00 0.00 3.53
2498 4262 7.395206 GGTTTATTTTTCTAAGCACCTCCCTAA 59.605 37.037 0.00 0.00 0.00 2.69
2499 4263 8.459635 GTTTATTTTTCTAAGCACCTCCCTAAG 58.540 37.037 0.00 0.00 0.00 2.18
2500 4264 3.629142 TTTCTAAGCACCTCCCTAAGC 57.371 47.619 0.00 0.00 0.00 3.09
2501 4265 2.247699 TCTAAGCACCTCCCTAAGCA 57.752 50.000 0.00 0.00 0.00 3.91
2502 4266 2.764269 TCTAAGCACCTCCCTAAGCAT 58.236 47.619 0.00 0.00 0.00 3.79
2503 4267 2.700897 TCTAAGCACCTCCCTAAGCATC 59.299 50.000 0.00 0.00 0.00 3.91
2504 4268 1.589414 AAGCACCTCCCTAAGCATCT 58.411 50.000 0.00 0.00 0.00 2.90
2505 4269 1.127343 AGCACCTCCCTAAGCATCTC 58.873 55.000 0.00 0.00 0.00 2.75
2506 4270 0.107643 GCACCTCCCTAAGCATCTCC 59.892 60.000 0.00 0.00 0.00 3.71
2507 4271 0.761802 CACCTCCCTAAGCATCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
2508 4272 0.343372 ACCTCCCTAAGCATCTCCCA 59.657 55.000 0.00 0.00 0.00 4.37
2509 4273 1.061033 ACCTCCCTAAGCATCTCCCAT 60.061 52.381 0.00 0.00 0.00 4.00
2510 4274 2.061061 CCTCCCTAAGCATCTCCCATT 58.939 52.381 0.00 0.00 0.00 3.16
2511 4275 2.224719 CCTCCCTAAGCATCTCCCATTG 60.225 54.545 0.00 0.00 0.00 2.82
2512 4276 2.441001 CTCCCTAAGCATCTCCCATTGT 59.559 50.000 0.00 0.00 0.00 2.71
2513 4277 3.648067 CTCCCTAAGCATCTCCCATTGTA 59.352 47.826 0.00 0.00 0.00 2.41
2514 4278 3.391296 TCCCTAAGCATCTCCCATTGTAC 59.609 47.826 0.00 0.00 0.00 2.90
2515 4279 3.136443 CCCTAAGCATCTCCCATTGTACA 59.864 47.826 0.00 0.00 0.00 2.90
2516 4280 4.385199 CCCTAAGCATCTCCCATTGTACAA 60.385 45.833 11.41 11.41 0.00 2.41
2517 4281 4.818546 CCTAAGCATCTCCCATTGTACAAG 59.181 45.833 14.65 6.30 0.00 3.16
2518 4282 3.287867 AGCATCTCCCATTGTACAAGG 57.712 47.619 14.65 13.92 0.00 3.61
2519 4283 1.678101 GCATCTCCCATTGTACAAGGC 59.322 52.381 14.66 0.00 0.00 4.35
2520 4284 2.301346 CATCTCCCATTGTACAAGGCC 58.699 52.381 14.66 0.00 0.00 5.19
2521 4285 1.668826 TCTCCCATTGTACAAGGCCT 58.331 50.000 14.66 0.00 0.00 5.19
2522 4286 2.840511 TCTCCCATTGTACAAGGCCTA 58.159 47.619 14.66 1.57 0.00 3.93
2533 4297 1.488393 ACAAGGCCTAAGAGAGCATCC 59.512 52.381 5.16 0.00 33.66 3.51
2591 4356 9.739276 ATAGACAAATCAGTTTTCTATGTCCAA 57.261 29.630 0.00 0.00 32.60 3.53
2628 4393 3.930336 TCATTTGCCATATCTCCTAGCG 58.070 45.455 0.00 0.00 0.00 4.26
2651 4416 1.286248 CCTGTAGGTGTTAAGGGCCT 58.714 55.000 0.00 0.00 36.47 5.19
2866 4631 2.585330 TGCATGAAAGAAGTGCTTCCA 58.415 42.857 8.19 0.96 40.33 3.53
2878 4643 6.656902 AGAAGTGCTTCCATAATCTCAATGA 58.343 36.000 8.19 0.00 40.33 2.57
2879 4644 7.114754 AGAAGTGCTTCCATAATCTCAATGAA 58.885 34.615 8.19 0.00 40.33 2.57
2881 4646 7.330900 AGTGCTTCCATAATCTCAATGAAAG 57.669 36.000 0.00 0.00 0.00 2.62
2882 4647 7.114754 AGTGCTTCCATAATCTCAATGAAAGA 58.885 34.615 0.00 0.00 0.00 2.52
2883 4648 7.613022 AGTGCTTCCATAATCTCAATGAAAGAA 59.387 33.333 0.00 0.00 0.00 2.52
2884 4649 7.914346 GTGCTTCCATAATCTCAATGAAAGAAG 59.086 37.037 0.00 0.00 0.00 2.85
2885 4650 7.613022 TGCTTCCATAATCTCAATGAAAGAAGT 59.387 33.333 0.00 0.00 29.83 3.01
2886 4651 9.113838 GCTTCCATAATCTCAATGAAAGAAGTA 57.886 33.333 0.00 0.00 29.83 2.24
2940 4705 8.806146 AGCTATGGTGATTTGTAATCAAAGTTT 58.194 29.630 3.83 0.00 45.01 2.66
2988 4753 2.494870 AGCAAATGGAAGCAATGGAGAC 59.505 45.455 0.00 0.00 0.00 3.36
3179 4944 5.368989 AGATTTTCTCTTTCTTGGTCACGT 58.631 37.500 0.00 0.00 0.00 4.49
3298 5063 6.761714 TCTCGGCTAATGGTAAAAGAATCTTC 59.238 38.462 0.00 0.00 0.00 2.87
3360 5128 4.533222 CAACTAATCCCACACGTTTTGAC 58.467 43.478 0.00 0.00 0.00 3.18
3361 5129 3.811083 ACTAATCCCACACGTTTTGACA 58.189 40.909 0.00 0.00 0.00 3.58
3362 5130 4.200874 ACTAATCCCACACGTTTTGACAA 58.799 39.130 0.00 0.00 0.00 3.18
3390 5160 3.242248 GCTAACCATTCGTTACTACAGCG 59.758 47.826 0.00 0.00 35.79 5.18
3391 5161 2.288961 ACCATTCGTTACTACAGCGG 57.711 50.000 0.00 0.00 0.00 5.52
3428 5198 3.763897 GCAAACCTTTCCCACTGATATGT 59.236 43.478 0.00 0.00 0.00 2.29
3619 5389 5.826208 ACTCATTTCGGAAGGTAAAAGTTGT 59.174 36.000 0.00 0.00 0.00 3.32
3620 5390 6.320418 ACTCATTTCGGAAGGTAAAAGTTGTT 59.680 34.615 0.00 0.00 0.00 2.83
4198 5968 7.724305 TCTTCACTGTGGTTATTTTCAGTAC 57.276 36.000 8.11 0.00 38.79 2.73
4309 6079 4.416848 ACTTATGGCCATATGAGGTTCCTT 59.583 41.667 33.92 14.36 0.00 3.36
4375 6145 2.564947 CTCAGAAGTAAGGACTGGCAGT 59.435 50.000 22.26 22.26 35.52 4.40
4699 6472 6.653320 GGTGAGTTCAGTAAATCCAACATGTA 59.347 38.462 0.00 0.00 0.00 2.29
4958 6731 7.985184 AGATATGCTCGGAATACTAAACACAAA 59.015 33.333 0.00 0.00 0.00 2.83
5143 6929 6.047870 ACTTGCTCACAGACATATCATCTTC 58.952 40.000 0.00 0.00 0.00 2.87
5374 7265 5.066505 CCACTGCTTACTTGAAGAAACACTT 59.933 40.000 0.00 0.00 42.03 3.16
5375 7266 5.967674 CACTGCTTACTTGAAGAAACACTTG 59.032 40.000 0.00 0.00 39.13 3.16
5495 7386 6.173339 TCTATGTTCAAAGAGCCCTAAAGTG 58.827 40.000 0.00 0.00 0.00 3.16
5569 7460 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
5602 7498 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
6004 8021 6.844097 TGGGTAACTTCATTGTAATTTCCC 57.156 37.500 0.00 0.00 0.00 3.97
6113 8131 5.459762 CGTATTGGAATGAAAACATGGCATC 59.540 40.000 0.00 0.00 0.00 3.91
6176 8194 6.707608 TCCAGTAAATCACAGCATAGCAATAG 59.292 38.462 0.00 0.00 0.00 1.73
6260 8278 3.243873 TGAGCGATCAAATACCAGCTAGG 60.244 47.826 0.00 0.00 45.67 3.02
6336 8354 3.011566 TGACATTATTCACCGGCCAAT 57.988 42.857 0.00 1.93 0.00 3.16
6350 8368 3.181397 CGGCCAATTTAACTGCATTCTG 58.819 45.455 2.24 0.00 0.00 3.02
6420 8438 5.543405 AGAGCATATTCATAAGGCTGAGTCT 59.457 40.000 0.00 0.00 34.44 3.24
6482 8501 8.529424 AGAAGATTTATGGCAGAAAATCATCA 57.471 30.769 27.16 4.90 42.14 3.07
6498 8517 7.440523 AAATCATCACAAGAACAAGGACTAC 57.559 36.000 0.00 0.00 0.00 2.73
6547 8691 8.539770 AGATATTCAACCTGCTTTACATATCG 57.460 34.615 0.00 0.00 30.76 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 247 1.302033 GGCGGCACCCATGATCTAG 60.302 63.158 3.07 0.00 0.00 2.43
205 248 2.828868 GGCGGCACCCATGATCTA 59.171 61.111 3.07 0.00 0.00 1.98
206 249 4.552365 CGGCGGCACCCATGATCT 62.552 66.667 10.53 0.00 33.26 2.75
207 250 4.856801 ACGGCGGCACCCATGATC 62.857 66.667 13.24 0.00 33.26 2.92
230 273 6.046593 CACGCCTATCCAATCTTAAACAGTA 58.953 40.000 0.00 0.00 0.00 2.74
266 310 1.757118 CCAAGCACGATCTCCTCCTAA 59.243 52.381 0.00 0.00 0.00 2.69
268 312 1.333636 CCCAAGCACGATCTCCTCCT 61.334 60.000 0.00 0.00 0.00 3.69
296 340 5.041191 CAGAAAGTGCCACCTTCCTATAT 57.959 43.478 2.58 0.00 0.00 0.86
300 347 3.733709 CAGAAAGTGCCACCTTCCT 57.266 52.632 2.58 0.00 0.00 3.36
334 381 4.742201 CAGGCACCACCGGAGTCG 62.742 72.222 9.46 1.66 46.52 4.18
341 388 2.362889 CCATTCCCAGGCACCACC 60.363 66.667 0.00 0.00 39.61 4.61
397 444 1.134877 TCTTGAGCATCGAAGGAGCAG 60.135 52.381 0.00 0.00 38.61 4.24
419 466 7.323416 TCGACGTTTGATTTGATTGAAATTCTG 59.677 33.333 0.00 0.00 34.18 3.02
457 504 8.829612 TGTATATACTCGAATAACTTGTCGTGA 58.170 33.333 13.89 0.00 38.41 4.35
491 538 0.742281 CAAGCCGGTCCTCATGAGTG 60.742 60.000 21.11 12.59 0.00 3.51
518 777 2.621526 TGAGAGCTAGAACACGTGAACA 59.378 45.455 25.01 3.12 0.00 3.18
544 803 7.905604 TTGGATAAGCGATATTTGGATACTG 57.094 36.000 0.00 0.00 37.61 2.74
545 804 8.375506 TCTTTGGATAAGCGATATTTGGATACT 58.624 33.333 0.00 0.00 37.61 2.12
564 823 9.901172 GTCTATTCTAAATAAAGGGTCTTTGGA 57.099 33.333 3.44 0.00 0.00 3.53
566 825 9.681062 TGGTCTATTCTAAATAAAGGGTCTTTG 57.319 33.333 3.44 0.00 0.00 2.77
620 879 9.155053 CTCGAAAATGTATTTAAGCGGATAAAC 57.845 33.333 0.00 0.00 0.00 2.01
626 885 3.960002 CGCTCGAAAATGTATTTAAGCGG 59.040 43.478 21.35 11.29 42.77 5.52
627 886 4.574759 ACGCTCGAAAATGTATTTAAGCG 58.425 39.130 24.31 24.31 46.71 4.68
635 1746 3.609373 CCTTAACGACGCTCGAAAATGTA 59.391 43.478 13.06 0.00 43.74 2.29
637 1748 2.664568 TCCTTAACGACGCTCGAAAATG 59.335 45.455 13.06 5.47 43.74 2.32
685 1804 9.298774 GATAGTAGTCGTAAAGTTTATGCTGTT 57.701 33.333 9.60 6.39 0.00 3.16
687 1806 8.851960 TGATAGTAGTCGTAAAGTTTATGCTG 57.148 34.615 9.60 0.00 0.00 4.41
707 1826 7.235606 TGGTTCAGGTATTCCCTTATCTGATAG 59.764 40.741 0.00 0.00 42.73 2.08
708 1827 7.016268 GTGGTTCAGGTATTCCCTTATCTGATA 59.984 40.741 0.00 0.00 42.73 2.15
710 1829 5.130477 GTGGTTCAGGTATTCCCTTATCTGA 59.870 44.000 0.00 0.00 42.73 3.27
711 1830 5.368989 GTGGTTCAGGTATTCCCTTATCTG 58.631 45.833 0.00 0.00 42.73 2.90
712 1831 4.412528 GGTGGTTCAGGTATTCCCTTATCT 59.587 45.833 0.00 0.00 42.73 1.98
715 1834 2.502538 CGGTGGTTCAGGTATTCCCTTA 59.497 50.000 0.00 0.00 42.73 2.69
722 1843 1.337447 CGTGTTCGGTGGTTCAGGTAT 60.337 52.381 0.00 0.00 0.00 2.73
745 1866 2.093783 GTGAAGCCTTGTATTTCGTCGG 59.906 50.000 0.00 0.00 0.00 4.79
754 1875 1.367346 TCCATGGGTGAAGCCTTGTA 58.633 50.000 13.02 0.00 37.43 2.41
758 1879 3.979501 AATAATCCATGGGTGAAGCCT 57.020 42.857 13.02 0.00 37.43 4.58
811 2298 1.194547 GCGAACAGTCATCAGCGAAAA 59.805 47.619 0.00 0.00 0.00 2.29
869 2356 1.141665 GGAAATCATTGTGCCCGGC 59.858 57.895 1.04 1.04 0.00 6.13
898 2385 0.471780 TCTGGAGAGCAACTGGGTGA 60.472 55.000 0.00 0.00 0.00 4.02
929 2422 0.458543 CGCGGCTGGCTATGTATAGG 60.459 60.000 0.00 0.00 40.44 2.57
935 2428 4.529219 TCACCGCGGCTGGCTATG 62.529 66.667 28.58 14.71 40.44 2.23
983 2476 3.023949 ATGGCTGCACGTCCTCCTC 62.024 63.158 0.50 0.00 0.00 3.71
984 2477 3.005539 ATGGCTGCACGTCCTCCT 61.006 61.111 0.50 0.00 0.00 3.69
985 2478 2.821366 CATGGCTGCACGTCCTCC 60.821 66.667 0.50 0.00 0.00 4.30
993 2486 3.654143 AGCAGGGACATGGCTGCA 61.654 61.111 14.65 0.00 44.41 4.41
1070 2575 1.268283 CCTGGGGAACTGACTCCTCC 61.268 65.000 0.00 0.00 34.72 4.30
1071 2576 1.268283 CCCTGGGGAACTGACTCCTC 61.268 65.000 4.27 0.00 36.38 3.71
1119 2624 4.796038 TGTGCTAGAACTTACCTGGTAC 57.204 45.455 5.94 0.00 0.00 3.34
1163 2683 3.118811 GGTGCATCAGAGCTTCTAACTCT 60.119 47.826 0.00 0.00 45.39 3.24
1170 2690 1.467734 CACAAGGTGCATCAGAGCTTC 59.532 52.381 0.00 0.00 34.99 3.86
1183 2703 1.230635 GCATCAGCGTCACACAAGGT 61.231 55.000 0.00 0.00 0.00 3.50
1218 2738 3.393970 CTCTGCCGCCTTCCCTCA 61.394 66.667 0.00 0.00 0.00 3.86
1292 2812 2.279741 GTGTGTGTGTGTGTGTGATCT 58.720 47.619 0.00 0.00 0.00 2.75
1294 2814 1.737236 GTGTGTGTGTGTGTGTGTGAT 59.263 47.619 0.00 0.00 0.00 3.06
1295 2815 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
1298 2818 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1299 2819 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1300 2820 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1301 2821 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1303 2823 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1304 2824 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1305 2825 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1306 2826 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1307 2827 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1309 2829 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1310 2830 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1311 2831 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1314 2834 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1315 2835 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1317 2837 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1318 2838 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1320 2840 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1322 2842 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1324 2844 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1326 2846 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1328 2848 0.179192 GCTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1330 2850 1.060779 CGCTGTGTGTGTGTGTGTG 59.939 57.895 0.00 0.00 0.00 3.82
1332 2852 0.167908 AAACGCTGTGTGTGTGTGTG 59.832 50.000 0.00 0.00 39.64 3.82
1334 2854 0.586256 CGAAACGCTGTGTGTGTGTG 60.586 55.000 0.00 0.00 39.64 3.82
1335 2855 1.017177 ACGAAACGCTGTGTGTGTGT 61.017 50.000 0.00 0.00 39.64 3.72
1423 2944 3.700539 TGGTAAGTAGCGGCAACTATACA 59.299 43.478 1.45 0.00 0.00 2.29
1428 2949 1.346722 ACTTGGTAAGTAGCGGCAACT 59.653 47.619 1.45 0.00 40.69 3.16
1434 2955 3.518590 CCTGGTAACTTGGTAAGTAGCG 58.481 50.000 0.00 0.00 41.91 4.26
1435 2956 3.262660 ACCCTGGTAACTTGGTAAGTAGC 59.737 47.826 0.00 0.00 41.91 3.58
1476 3080 8.663753 GTTGTGACGTTTACTTTGTAAATTACG 58.336 33.333 6.24 8.32 0.00 3.18
1501 3106 1.235724 GCTACGTCCAAAAGGCAAGT 58.764 50.000 0.00 0.00 0.00 3.16
1510 3115 1.262640 GGGAAGGAGGCTACGTCCAA 61.263 60.000 29.32 0.00 40.46 3.53
1571 3176 5.485209 ACTGGAACGAAAGGATTAGAAGT 57.515 39.130 0.00 0.00 0.00 3.01
1587 3192 7.692460 TTCATACTTCTCGTTAGTACTGGAA 57.308 36.000 5.39 1.93 31.37 3.53
1588 3193 7.876936 ATTCATACTTCTCGTTAGTACTGGA 57.123 36.000 5.39 0.00 31.37 3.86
1594 3199 9.570488 GTTCAGTTATTCATACTTCTCGTTAGT 57.430 33.333 0.00 0.00 0.00 2.24
1626 3234 8.594550 AGCCTCTCTCAGTTTTATGTTTACTTA 58.405 33.333 0.00 0.00 0.00 2.24
1627 3235 7.454225 AGCCTCTCTCAGTTTTATGTTTACTT 58.546 34.615 0.00 0.00 0.00 2.24
1628 3236 7.010339 AGCCTCTCTCAGTTTTATGTTTACT 57.990 36.000 0.00 0.00 0.00 2.24
1629 3237 8.773404 TTAGCCTCTCTCAGTTTTATGTTTAC 57.227 34.615 0.00 0.00 0.00 2.01
1630 3238 9.601217 GATTAGCCTCTCTCAGTTTTATGTTTA 57.399 33.333 0.00 0.00 0.00 2.01
1631 3239 8.103305 TGATTAGCCTCTCTCAGTTTTATGTTT 58.897 33.333 0.00 0.00 0.00 2.83
1632 3240 7.550906 GTGATTAGCCTCTCTCAGTTTTATGTT 59.449 37.037 0.00 0.00 0.00 2.71
1633 3241 7.044798 GTGATTAGCCTCTCTCAGTTTTATGT 58.955 38.462 0.00 0.00 0.00 2.29
1672 3280 5.473162 AGTGCTTTGTTTTTGCTTTTCCTTT 59.527 32.000 0.00 0.00 0.00 3.11
1674 3282 4.578871 AGTGCTTTGTTTTTGCTTTTCCT 58.421 34.783 0.00 0.00 0.00 3.36
1676 3284 4.554586 GCAAGTGCTTTGTTTTTGCTTTTC 59.445 37.500 0.00 0.00 40.58 2.29
1678 3286 3.119884 GGCAAGTGCTTTGTTTTTGCTTT 60.120 39.130 2.85 0.00 42.68 3.51
1681 3289 1.267483 CGGCAAGTGCTTTGTTTTTGC 60.267 47.619 2.85 0.00 42.43 3.68
1682 3290 1.267483 GCGGCAAGTGCTTTGTTTTTG 60.267 47.619 2.85 0.00 41.70 2.44
1693 3342 2.383527 GGAAGTCGAGCGGCAAGTG 61.384 63.158 1.45 0.00 0.00 3.16
1701 3350 2.080286 TGCTTGTTAGGAAGTCGAGC 57.920 50.000 0.00 0.00 38.60 5.03
1733 3382 9.853555 TTATATGTGCTTGTTCATTCGAAAATT 57.146 25.926 0.00 0.00 31.43 1.82
1765 3414 5.220662 CGTCTTATATTTTGGTGCAGAGGTG 60.221 44.000 0.00 0.00 0.00 4.00
1766 3415 4.876107 CGTCTTATATTTTGGTGCAGAGGT 59.124 41.667 0.00 0.00 0.00 3.85
1767 3416 4.876107 ACGTCTTATATTTTGGTGCAGAGG 59.124 41.667 0.00 0.00 0.00 3.69
1768 3417 6.422776 AACGTCTTATATTTTGGTGCAGAG 57.577 37.500 0.00 0.00 0.00 3.35
1769 3418 6.811253 AAACGTCTTATATTTTGGTGCAGA 57.189 33.333 0.00 0.00 0.00 4.26
1770 3419 7.381139 ACAAAAACGTCTTATATTTTGGTGCAG 59.619 33.333 19.47 1.02 43.54 4.41
1771 3420 7.203910 ACAAAAACGTCTTATATTTTGGTGCA 58.796 30.769 19.47 0.00 43.54 4.57
1772 3421 7.631915 ACAAAAACGTCTTATATTTTGGTGC 57.368 32.000 19.47 0.00 43.54 5.01
1774 3423 9.401873 GCTAACAAAAACGTCTTATATTTTGGT 57.598 29.630 19.47 16.85 43.54 3.67
1775 3424 9.620660 AGCTAACAAAAACGTCTTATATTTTGG 57.379 29.630 19.47 7.91 43.54 3.28
1783 3432 9.533253 ACTAGTTTAGCTAACAAAAACGTCTTA 57.467 29.630 5.45 0.00 39.30 2.10
1784 3433 8.429493 ACTAGTTTAGCTAACAAAAACGTCTT 57.571 30.769 5.45 0.00 39.30 3.01
1785 3434 7.924947 AGACTAGTTTAGCTAACAAAAACGTCT 59.075 33.333 5.45 9.17 39.30 4.18
1786 3435 8.070007 AGACTAGTTTAGCTAACAAAAACGTC 57.930 34.615 5.45 7.21 39.30 4.34
1787 3436 8.972349 GTAGACTAGTTTAGCTAACAAAAACGT 58.028 33.333 5.45 0.00 39.30 3.99
1788 3437 8.152159 CGTAGACTAGTTTAGCTAACAAAAACG 58.848 37.037 5.45 5.67 39.30 3.60
1789 3438 9.185192 TCGTAGACTAGTTTAGCTAACAAAAAC 57.815 33.333 5.45 3.16 39.30 2.43
1790 3439 9.748708 TTCGTAGACTAGTTTAGCTAACAAAAA 57.251 29.630 5.45 0.00 35.97 1.94
1791 3440 9.748708 TTTCGTAGACTAGTTTAGCTAACAAAA 57.251 29.630 5.45 0.00 35.97 2.44
1792 3441 9.748708 TTTTCGTAGACTAGTTTAGCTAACAAA 57.251 29.630 5.45 0.00 35.97 2.83
1793 3442 9.185192 GTTTTCGTAGACTAGTTTAGCTAACAA 57.815 33.333 5.45 0.00 35.97 2.83
1794 3443 7.535258 CGTTTTCGTAGACTAGTTTAGCTAACA 59.465 37.037 5.45 0.00 35.97 2.41
1795 3444 7.460766 GCGTTTTCGTAGACTAGTTTAGCTAAC 60.461 40.741 5.45 1.91 46.03 2.34
1796 3445 6.524586 GCGTTTTCGTAGACTAGTTTAGCTAA 59.475 38.462 0.86 0.86 46.03 3.09
1797 3446 6.024049 GCGTTTTCGTAGACTAGTTTAGCTA 58.976 40.000 0.00 0.00 46.03 3.32
1798 3447 4.855937 GCGTTTTCGTAGACTAGTTTAGCT 59.144 41.667 0.00 0.00 46.03 3.32
1799 3448 4.031089 GGCGTTTTCGTAGACTAGTTTAGC 59.969 45.833 0.00 0.00 46.03 3.09
1800 3449 5.397326 AGGCGTTTTCGTAGACTAGTTTAG 58.603 41.667 0.00 0.00 46.03 1.85
1801 3450 5.376854 AGGCGTTTTCGTAGACTAGTTTA 57.623 39.130 0.00 0.00 46.03 2.01
1802 3451 4.248691 AGGCGTTTTCGTAGACTAGTTT 57.751 40.909 0.00 0.00 46.03 2.66
1803 3452 3.930634 AGGCGTTTTCGTAGACTAGTT 57.069 42.857 0.00 0.00 46.03 2.24
1804 3453 3.005155 ACAAGGCGTTTTCGTAGACTAGT 59.995 43.478 0.00 0.00 46.03 2.57
1805 3454 3.572584 ACAAGGCGTTTTCGTAGACTAG 58.427 45.455 0.00 0.00 46.03 2.57
1806 3455 3.648339 ACAAGGCGTTTTCGTAGACTA 57.352 42.857 0.00 0.00 46.03 2.59
1807 3456 2.521105 ACAAGGCGTTTTCGTAGACT 57.479 45.000 0.00 0.00 46.03 3.24
1808 3457 4.916099 AATACAAGGCGTTTTCGTAGAC 57.084 40.909 0.00 0.00 46.03 2.59
1809 3458 5.334260 CCAAAATACAAGGCGTTTTCGTAGA 60.334 40.000 0.00 0.00 46.03 2.59
1810 3459 4.849383 CCAAAATACAAGGCGTTTTCGTAG 59.151 41.667 0.00 0.00 46.03 3.51
1811 3460 4.275443 ACCAAAATACAAGGCGTTTTCGTA 59.725 37.500 0.00 0.00 46.03 3.43
1812 3461 3.067040 ACCAAAATACAAGGCGTTTTCGT 59.933 39.130 0.00 0.00 46.03 3.85
1814 3463 4.613866 CGTACCAAAATACAAGGCGTTTTC 59.386 41.667 0.00 0.00 0.00 2.29
1815 3464 4.538917 CGTACCAAAATACAAGGCGTTTT 58.461 39.130 0.00 0.00 0.00 2.43
1816 3465 3.058085 CCGTACCAAAATACAAGGCGTTT 60.058 43.478 0.00 0.00 0.00 3.60
1817 3466 2.485038 CCGTACCAAAATACAAGGCGTT 59.515 45.455 0.00 0.00 0.00 4.84
1818 3467 2.078392 CCGTACCAAAATACAAGGCGT 58.922 47.619 0.00 0.00 0.00 5.68
1819 3468 2.348660 TCCGTACCAAAATACAAGGCG 58.651 47.619 0.00 0.00 0.00 5.52
1820 3469 3.066203 CCATCCGTACCAAAATACAAGGC 59.934 47.826 0.00 0.00 0.00 4.35
1821 3470 4.519213 TCCATCCGTACCAAAATACAAGG 58.481 43.478 0.00 0.00 0.00 3.61
1822 3471 5.183228 ACTCCATCCGTACCAAAATACAAG 58.817 41.667 0.00 0.00 0.00 3.16
1823 3472 5.168647 ACTCCATCCGTACCAAAATACAA 57.831 39.130 0.00 0.00 0.00 2.41
1824 3473 4.829872 ACTCCATCCGTACCAAAATACA 57.170 40.909 0.00 0.00 0.00 2.29
1825 3474 5.751990 CAGTACTCCATCCGTACCAAAATAC 59.248 44.000 0.00 0.00 38.34 1.89
1826 3475 5.657745 TCAGTACTCCATCCGTACCAAAATA 59.342 40.000 0.00 0.00 38.34 1.40
1827 3476 4.468510 TCAGTACTCCATCCGTACCAAAAT 59.531 41.667 0.00 0.00 38.34 1.82
1828 3477 3.833650 TCAGTACTCCATCCGTACCAAAA 59.166 43.478 0.00 0.00 38.34 2.44
1829 3478 3.433343 TCAGTACTCCATCCGTACCAAA 58.567 45.455 0.00 0.00 38.34 3.28
1830 3479 3.090210 TCAGTACTCCATCCGTACCAA 57.910 47.619 0.00 0.00 38.34 3.67
1831 3480 2.812836 TCAGTACTCCATCCGTACCA 57.187 50.000 0.00 0.00 38.34 3.25
1832 3481 4.341520 AGAAATCAGTACTCCATCCGTACC 59.658 45.833 0.00 0.00 38.34 3.34
1833 3482 5.517322 AGAAATCAGTACTCCATCCGTAC 57.483 43.478 0.00 0.00 37.96 3.67
1834 3483 6.363065 AGTAGAAATCAGTACTCCATCCGTA 58.637 40.000 0.00 0.00 0.00 4.02
1835 3484 5.202004 AGTAGAAATCAGTACTCCATCCGT 58.798 41.667 0.00 0.00 0.00 4.69
1836 3485 5.776173 AGTAGAAATCAGTACTCCATCCG 57.224 43.478 0.00 0.00 0.00 4.18
1837 3486 6.265649 TGCTAGTAGAAATCAGTACTCCATCC 59.734 42.308 0.00 0.00 31.79 3.51
1838 3487 7.278461 TGCTAGTAGAAATCAGTACTCCATC 57.722 40.000 0.00 0.00 31.79 3.51
1839 3488 7.256119 CCATGCTAGTAGAAATCAGTACTCCAT 60.256 40.741 0.00 0.00 31.79 3.41
1840 3489 6.040955 CCATGCTAGTAGAAATCAGTACTCCA 59.959 42.308 0.00 0.00 31.79 3.86
1841 3490 6.041069 ACCATGCTAGTAGAAATCAGTACTCC 59.959 42.308 0.00 0.00 31.79 3.85
1842 3491 7.045126 ACCATGCTAGTAGAAATCAGTACTC 57.955 40.000 0.00 0.00 31.79 2.59
1843 3492 7.780745 AGTACCATGCTAGTAGAAATCAGTACT 59.219 37.037 0.00 9.56 32.79 2.73
1844 3493 7.863375 CAGTACCATGCTAGTAGAAATCAGTAC 59.137 40.741 0.00 7.80 0.00 2.73
1845 3494 7.470147 GCAGTACCATGCTAGTAGAAATCAGTA 60.470 40.741 0.00 0.00 43.07 2.74
1846 3495 6.684111 GCAGTACCATGCTAGTAGAAATCAGT 60.684 42.308 0.00 0.00 43.07 3.41
1847 3496 5.694006 GCAGTACCATGCTAGTAGAAATCAG 59.306 44.000 0.00 0.00 43.07 2.90
1852 3501 3.371034 TGGCAGTACCATGCTAGTAGAA 58.629 45.455 0.00 0.00 46.36 2.10
1884 3535 8.740123 TTTCTTTAATGTAGTGAACTGAACCA 57.260 30.769 0.00 0.00 0.00 3.67
1931 3680 9.748708 CCATTTAAGGTTATTCACATGTTATGG 57.251 33.333 0.00 0.00 33.60 2.74
2035 3793 4.080243 TGGGTGAAGACCACTTTTAAGTCA 60.080 41.667 0.00 0.00 45.25 3.41
2055 3813 1.836166 ACAGATCAGTGACCAGATGGG 59.164 52.381 3.48 0.00 44.81 4.00
2059 3817 2.174360 CCTCACAGATCAGTGACCAGA 58.826 52.381 16.22 0.00 43.18 3.86
2125 3884 3.832704 GCATTGTTGCCCCTTTACC 57.167 52.632 0.00 0.00 43.38 2.85
2143 3902 0.736636 TGTCGGTAGGTGCGTATGAG 59.263 55.000 0.00 0.00 0.00 2.90
2159 3919 2.849880 TGTCTTTTGCTGTGCTTGTC 57.150 45.000 0.00 0.00 0.00 3.18
2240 4003 5.345702 TGATGTAACTGAAGTATGGCGTAC 58.654 41.667 8.86 8.86 0.00 3.67
2260 4023 8.954950 TTTGTTTGTTGGTATTTTCACATGAT 57.045 26.923 0.00 0.00 0.00 2.45
2325 4089 1.992557 TCTCCCATTGTACAAGGCCTT 59.007 47.619 13.78 13.78 0.00 4.35
2326 4090 1.668826 TCTCCCATTGTACAAGGCCT 58.331 50.000 14.66 0.00 0.00 5.19
2327 4091 2.301346 CATCTCCCATTGTACAAGGCC 58.699 52.381 14.66 0.00 0.00 5.19
2328 4092 1.678101 GCATCTCCCATTGTACAAGGC 59.322 52.381 14.66 0.00 0.00 4.35
2329 4093 3.287867 AGCATCTCCCATTGTACAAGG 57.712 47.619 14.65 13.92 0.00 3.61
2330 4094 4.818546 CCTAAGCATCTCCCATTGTACAAG 59.181 45.833 14.65 6.30 0.00 3.16
2331 4095 4.473196 TCCTAAGCATCTCCCATTGTACAA 59.527 41.667 11.41 11.41 0.00 2.41
2332 4096 4.037222 TCCTAAGCATCTCCCATTGTACA 58.963 43.478 0.00 0.00 0.00 2.90
2333 4097 4.345257 TCTCCTAAGCATCTCCCATTGTAC 59.655 45.833 0.00 0.00 0.00 2.90
2334 4098 4.556697 TCTCCTAAGCATCTCCCATTGTA 58.443 43.478 0.00 0.00 0.00 2.41
2335 4099 3.387962 TCTCCTAAGCATCTCCCATTGT 58.612 45.455 0.00 0.00 0.00 2.71
2336 4100 3.244491 CCTCTCCTAAGCATCTCCCATTG 60.244 52.174 0.00 0.00 0.00 2.82
2337 4101 2.978278 CCTCTCCTAAGCATCTCCCATT 59.022 50.000 0.00 0.00 0.00 3.16
2338 4102 2.090267 ACCTCTCCTAAGCATCTCCCAT 60.090 50.000 0.00 0.00 0.00 4.00
2339 4103 1.292242 ACCTCTCCTAAGCATCTCCCA 59.708 52.381 0.00 0.00 0.00 4.37
2340 4104 1.691434 CACCTCTCCTAAGCATCTCCC 59.309 57.143 0.00 0.00 0.00 4.30
2341 4105 1.069978 GCACCTCTCCTAAGCATCTCC 59.930 57.143 0.00 0.00 0.00 3.71
2342 4106 2.038659 AGCACCTCTCCTAAGCATCTC 58.961 52.381 0.00 0.00 0.00 2.75
2343 4107 2.173126 AGCACCTCTCCTAAGCATCT 57.827 50.000 0.00 0.00 0.00 2.90
2344 4108 2.998316 AAGCACCTCTCCTAAGCATC 57.002 50.000 0.00 0.00 0.00 3.91
2345 4109 3.640967 CTCTAAGCACCTCTCCTAAGCAT 59.359 47.826 0.00 0.00 0.00 3.79
2346 4110 3.027412 CTCTAAGCACCTCTCCTAAGCA 58.973 50.000 0.00 0.00 0.00 3.91
2347 4111 3.292460 TCTCTAAGCACCTCTCCTAAGC 58.708 50.000 0.00 0.00 0.00 3.09
2348 4112 5.923733 TTTCTCTAAGCACCTCTCCTAAG 57.076 43.478 0.00 0.00 0.00 2.18
2349 4113 7.973048 TTATTTCTCTAAGCACCTCTCCTAA 57.027 36.000 0.00 0.00 0.00 2.69
2350 4114 7.147707 GGTTTATTTCTCTAAGCACCTCTCCTA 60.148 40.741 0.00 0.00 0.00 2.94
2351 4115 6.352308 GGTTTATTTCTCTAAGCACCTCTCCT 60.352 42.308 0.00 0.00 0.00 3.69
2352 4116 5.818336 GGTTTATTTCTCTAAGCACCTCTCC 59.182 44.000 0.00 0.00 0.00 3.71
2353 4117 6.407202 TGGTTTATTTCTCTAAGCACCTCTC 58.593 40.000 0.00 0.00 0.00 3.20
2354 4118 6.374417 TGGTTTATTTCTCTAAGCACCTCT 57.626 37.500 0.00 0.00 0.00 3.69
2355 4119 5.586643 CCTGGTTTATTTCTCTAAGCACCTC 59.413 44.000 0.00 0.00 0.00 3.85
2356 4120 5.250774 TCCTGGTTTATTTCTCTAAGCACCT 59.749 40.000 0.00 0.00 0.00 4.00
2357 4121 5.497474 TCCTGGTTTATTTCTCTAAGCACC 58.503 41.667 0.00 0.00 0.00 5.01
2358 4122 7.631717 AATCCTGGTTTATTTCTCTAAGCAC 57.368 36.000 0.00 0.00 0.00 4.40
2359 4123 7.339466 GGAAATCCTGGTTTATTTCTCTAAGCA 59.661 37.037 15.07 0.00 40.41 3.91
2360 4124 7.558081 AGGAAATCCTGGTTTATTTCTCTAAGC 59.442 37.037 15.07 2.90 46.55 3.09
2378 4142 1.815003 CACTGGTGCTCAAGGAAATCC 59.185 52.381 0.00 0.00 0.00 3.01
2391 4155 3.440173 CCCTGTACAAATAAGCACTGGTG 59.560 47.826 0.00 0.00 0.00 4.17
2392 4156 3.073946 ACCCTGTACAAATAAGCACTGGT 59.926 43.478 0.00 0.00 0.00 4.00
2393 4157 3.686016 ACCCTGTACAAATAAGCACTGG 58.314 45.455 0.00 0.00 0.00 4.00
2394 4158 5.581085 GTCTACCCTGTACAAATAAGCACTG 59.419 44.000 0.00 0.00 0.00 3.66
2395 4159 5.623824 CGTCTACCCTGTACAAATAAGCACT 60.624 44.000 0.00 0.00 0.00 4.40
2396 4160 4.565564 CGTCTACCCTGTACAAATAAGCAC 59.434 45.833 0.00 0.00 0.00 4.40
2397 4161 4.751060 CGTCTACCCTGTACAAATAAGCA 58.249 43.478 0.00 0.00 0.00 3.91
2398 4162 3.554731 GCGTCTACCCTGTACAAATAAGC 59.445 47.826 0.00 0.00 0.00 3.09
2399 4163 5.007385 AGCGTCTACCCTGTACAAATAAG 57.993 43.478 0.00 0.00 0.00 1.73
2400 4164 5.410355 AAGCGTCTACCCTGTACAAATAA 57.590 39.130 0.00 0.00 0.00 1.40
2401 4165 6.153340 AGTTAAGCGTCTACCCTGTACAAATA 59.847 38.462 0.00 0.00 0.00 1.40
2402 4166 3.975168 AAGCGTCTACCCTGTACAAAT 57.025 42.857 0.00 0.00 0.00 2.32
2403 4167 4.281688 AGTTAAGCGTCTACCCTGTACAAA 59.718 41.667 0.00 0.00 0.00 2.83
2404 4168 3.828451 AGTTAAGCGTCTACCCTGTACAA 59.172 43.478 0.00 0.00 0.00 2.41
2405 4169 3.424703 AGTTAAGCGTCTACCCTGTACA 58.575 45.455 0.00 0.00 0.00 2.90
2406 4170 5.567138 TTAGTTAAGCGTCTACCCTGTAC 57.433 43.478 0.00 0.00 0.00 2.90
2407 4171 5.824904 CTTAGTTAAGCGTCTACCCTGTA 57.175 43.478 0.00 0.00 0.00 2.74
2408 4172 4.715527 CTTAGTTAAGCGTCTACCCTGT 57.284 45.455 0.00 0.00 0.00 4.00
2419 4183 8.344098 TTCTATAGAAGAGACGCTTAGTTAAGC 58.656 37.037 11.24 12.72 44.03 3.09
2424 4188 9.005777 CCTATTTCTATAGAAGAGACGCTTAGT 57.994 37.037 20.34 0.00 36.83 2.24
2425 4189 9.005777 ACCTATTTCTATAGAAGAGACGCTTAG 57.994 37.037 20.34 11.23 36.83 2.18
2426 4190 8.921353 ACCTATTTCTATAGAAGAGACGCTTA 57.079 34.615 20.34 4.68 36.83 3.09
2427 4191 7.826918 ACCTATTTCTATAGAAGAGACGCTT 57.173 36.000 20.34 0.00 40.25 4.68
2428 4192 7.391275 GGTACCTATTTCTATAGAAGAGACGCT 59.609 40.741 20.34 5.67 36.62 5.07
2429 4193 7.529158 GGTACCTATTTCTATAGAAGAGACGC 58.471 42.308 20.34 12.52 36.62 5.19
2430 4194 7.148440 CCGGTACCTATTTCTATAGAAGAGACG 60.148 44.444 20.34 17.67 36.62 4.18
2431 4195 7.665145 ACCGGTACCTATTTCTATAGAAGAGAC 59.335 40.741 20.34 14.07 36.62 3.36
2432 4196 7.664731 CACCGGTACCTATTTCTATAGAAGAGA 59.335 40.741 20.34 7.64 36.62 3.10
2433 4197 7.575343 GCACCGGTACCTATTTCTATAGAAGAG 60.575 44.444 6.87 14.87 36.62 2.85
2434 4198 6.208204 GCACCGGTACCTATTTCTATAGAAGA 59.792 42.308 6.87 7.05 36.62 2.87
2435 4199 6.208994 AGCACCGGTACCTATTTCTATAGAAG 59.791 42.308 6.87 6.60 36.62 2.85
2436 4200 6.073314 AGCACCGGTACCTATTTCTATAGAA 58.927 40.000 6.87 11.24 36.62 2.10
2437 4201 5.638133 AGCACCGGTACCTATTTCTATAGA 58.362 41.667 6.87 0.00 36.62 1.98
2438 4202 5.979288 AGCACCGGTACCTATTTCTATAG 57.021 43.478 6.87 0.00 34.67 1.31
2439 4203 5.834742 TGAAGCACCGGTACCTATTTCTATA 59.165 40.000 6.87 0.00 0.00 1.31
2440 4204 4.652421 TGAAGCACCGGTACCTATTTCTAT 59.348 41.667 6.87 0.00 0.00 1.98
2441 4205 4.025360 TGAAGCACCGGTACCTATTTCTA 58.975 43.478 6.87 0.00 0.00 2.10
2442 4206 2.835764 TGAAGCACCGGTACCTATTTCT 59.164 45.455 6.87 0.00 0.00 2.52
2443 4207 3.118884 TCTGAAGCACCGGTACCTATTTC 60.119 47.826 6.87 1.77 0.00 2.17
2444 4208 2.835764 TCTGAAGCACCGGTACCTATTT 59.164 45.455 6.87 0.00 0.00 1.40
2445 4209 2.463752 TCTGAAGCACCGGTACCTATT 58.536 47.619 6.87 0.00 0.00 1.73
2446 4210 2.154567 TCTGAAGCACCGGTACCTAT 57.845 50.000 6.87 0.00 0.00 2.57
2447 4211 1.927487 TTCTGAAGCACCGGTACCTA 58.073 50.000 6.87 0.00 0.00 3.08
2448 4212 1.053424 TTTCTGAAGCACCGGTACCT 58.947 50.000 6.87 3.46 0.00 3.08
2449 4213 1.886886 TTTTCTGAAGCACCGGTACC 58.113 50.000 6.87 0.16 0.00 3.34
2450 4214 2.031420 GGTTTTTCTGAAGCACCGGTAC 60.031 50.000 6.87 0.00 0.00 3.34
2451 4215 2.223745 GGTTTTTCTGAAGCACCGGTA 58.776 47.619 6.87 0.00 0.00 4.02
2452 4216 1.029681 GGTTTTTCTGAAGCACCGGT 58.970 50.000 0.00 0.00 0.00 5.28
2453 4217 0.040425 CGGTTTTTCTGAAGCACCGG 60.040 55.000 24.20 0.00 45.44 5.28
2454 4218 3.454941 CGGTTTTTCTGAAGCACCG 57.545 52.632 20.97 20.97 44.07 4.94
2455 4219 1.029681 ACCGGTTTTTCTGAAGCACC 58.970 50.000 0.00 9.11 0.00 5.01
2456 4220 2.863401 AACCGGTTTTTCTGAAGCAC 57.137 45.000 15.86 0.00 0.00 4.40
2457 4221 5.523438 AATAAACCGGTTTTTCTGAAGCA 57.477 34.783 35.69 16.22 34.23 3.91
2458 4222 6.838198 AAAATAAACCGGTTTTTCTGAAGC 57.162 33.333 35.69 0.00 34.23 3.86
2464 4228 8.270799 GTGCTTAGAAAAATAAACCGGTTTTTC 58.729 33.333 35.69 29.42 46.75 2.29
2465 4229 7.225145 GGTGCTTAGAAAAATAAACCGGTTTTT 59.775 33.333 35.69 25.82 39.47 1.94
2466 4230 6.702723 GGTGCTTAGAAAAATAAACCGGTTTT 59.297 34.615 35.69 19.01 34.23 2.43
2467 4231 6.041182 AGGTGCTTAGAAAAATAAACCGGTTT 59.959 34.615 33.42 33.42 36.63 3.27
2468 4232 5.537295 AGGTGCTTAGAAAAATAAACCGGTT 59.463 36.000 15.86 15.86 0.00 4.44
2469 4233 5.074804 AGGTGCTTAGAAAAATAAACCGGT 58.925 37.500 0.00 0.00 0.00 5.28
2470 4234 5.392703 GGAGGTGCTTAGAAAAATAAACCGG 60.393 44.000 0.00 0.00 0.00 5.28
2471 4235 5.392703 GGGAGGTGCTTAGAAAAATAAACCG 60.393 44.000 0.00 0.00 0.00 4.44
2472 4236 5.715279 AGGGAGGTGCTTAGAAAAATAAACC 59.285 40.000 0.00 0.00 0.00 3.27
2473 4237 6.835819 AGGGAGGTGCTTAGAAAAATAAAC 57.164 37.500 0.00 0.00 0.00 2.01
2474 4238 7.122204 GCTTAGGGAGGTGCTTAGAAAAATAAA 59.878 37.037 0.00 0.00 0.00 1.40
2475 4239 6.602009 GCTTAGGGAGGTGCTTAGAAAAATAA 59.398 38.462 0.00 0.00 0.00 1.40
2476 4240 6.120220 GCTTAGGGAGGTGCTTAGAAAAATA 58.880 40.000 0.00 0.00 0.00 1.40
2477 4241 4.950475 GCTTAGGGAGGTGCTTAGAAAAAT 59.050 41.667 0.00 0.00 0.00 1.82
2478 4242 4.202524 TGCTTAGGGAGGTGCTTAGAAAAA 60.203 41.667 0.00 0.00 0.00 1.94
2479 4243 3.329520 TGCTTAGGGAGGTGCTTAGAAAA 59.670 43.478 0.00 0.00 0.00 2.29
2480 4244 2.910319 TGCTTAGGGAGGTGCTTAGAAA 59.090 45.455 0.00 0.00 0.00 2.52
2481 4245 2.546899 TGCTTAGGGAGGTGCTTAGAA 58.453 47.619 0.00 0.00 0.00 2.10
2482 4246 2.247699 TGCTTAGGGAGGTGCTTAGA 57.752 50.000 0.00 0.00 0.00 2.10
2483 4247 2.703007 AGATGCTTAGGGAGGTGCTTAG 59.297 50.000 0.00 0.00 0.00 2.18
2484 4248 2.700897 GAGATGCTTAGGGAGGTGCTTA 59.299 50.000 0.00 0.00 0.00 3.09
2485 4249 1.488393 GAGATGCTTAGGGAGGTGCTT 59.512 52.381 0.00 0.00 0.00 3.91
2486 4250 1.127343 GAGATGCTTAGGGAGGTGCT 58.873 55.000 0.00 0.00 0.00 4.40
2487 4251 0.107643 GGAGATGCTTAGGGAGGTGC 59.892 60.000 0.00 0.00 0.00 5.01
2488 4252 0.761802 GGGAGATGCTTAGGGAGGTG 59.238 60.000 0.00 0.00 0.00 4.00
2489 4253 0.343372 TGGGAGATGCTTAGGGAGGT 59.657 55.000 0.00 0.00 0.00 3.85
2490 4254 1.739750 ATGGGAGATGCTTAGGGAGG 58.260 55.000 0.00 0.00 0.00 4.30
2491 4255 2.441001 ACAATGGGAGATGCTTAGGGAG 59.559 50.000 0.00 0.00 0.00 4.30
2492 4256 2.492025 ACAATGGGAGATGCTTAGGGA 58.508 47.619 0.00 0.00 0.00 4.20
2493 4257 3.136443 TGTACAATGGGAGATGCTTAGGG 59.864 47.826 0.00 0.00 0.00 3.53
2494 4258 4.422073 TGTACAATGGGAGATGCTTAGG 57.578 45.455 0.00 0.00 0.00 2.69
2495 4259 4.818546 CCTTGTACAATGGGAGATGCTTAG 59.181 45.833 9.13 0.00 0.00 2.18
2496 4260 4.780815 CCTTGTACAATGGGAGATGCTTA 58.219 43.478 9.13 0.00 0.00 3.09
2497 4261 3.624777 CCTTGTACAATGGGAGATGCTT 58.375 45.455 9.13 0.00 0.00 3.91
2498 4262 2.684927 GCCTTGTACAATGGGAGATGCT 60.685 50.000 16.08 0.00 0.00 3.79
2499 4263 1.678101 GCCTTGTACAATGGGAGATGC 59.322 52.381 16.08 3.76 0.00 3.91
2500 4264 2.092212 AGGCCTTGTACAATGGGAGATG 60.092 50.000 16.08 0.00 0.00 2.90
2501 4265 2.208872 AGGCCTTGTACAATGGGAGAT 58.791 47.619 16.08 0.53 0.00 2.75
2502 4266 1.668826 AGGCCTTGTACAATGGGAGA 58.331 50.000 16.08 0.00 0.00 3.71
2503 4267 3.199946 TCTTAGGCCTTGTACAATGGGAG 59.800 47.826 12.58 6.16 0.00 4.30
2504 4268 3.186283 TCTTAGGCCTTGTACAATGGGA 58.814 45.455 12.58 6.88 0.00 4.37
2505 4269 3.199946 TCTCTTAGGCCTTGTACAATGGG 59.800 47.826 12.58 14.91 0.00 4.00
2506 4270 4.446371 CTCTCTTAGGCCTTGTACAATGG 58.554 47.826 12.58 13.26 0.00 3.16
2507 4271 3.873952 GCTCTCTTAGGCCTTGTACAATG 59.126 47.826 12.58 7.68 0.00 2.82
2508 4272 3.519510 TGCTCTCTTAGGCCTTGTACAAT 59.480 43.478 12.58 0.00 0.00 2.71
2509 4273 2.903784 TGCTCTCTTAGGCCTTGTACAA 59.096 45.455 12.58 8.28 0.00 2.41
2510 4274 2.536066 TGCTCTCTTAGGCCTTGTACA 58.464 47.619 12.58 0.00 0.00 2.90
2511 4275 3.493524 GGATGCTCTCTTAGGCCTTGTAC 60.494 52.174 12.58 0.00 0.00 2.90
2512 4276 2.700897 GGATGCTCTCTTAGGCCTTGTA 59.299 50.000 12.58 0.00 0.00 2.41
2513 4277 1.488393 GGATGCTCTCTTAGGCCTTGT 59.512 52.381 12.58 0.00 0.00 3.16
2514 4278 1.539929 CGGATGCTCTCTTAGGCCTTG 60.540 57.143 12.58 4.55 0.00 3.61
2515 4279 0.755686 CGGATGCTCTCTTAGGCCTT 59.244 55.000 12.58 0.00 0.00 4.35
2516 4280 1.753368 GCGGATGCTCTCTTAGGCCT 61.753 60.000 11.78 11.78 38.39 5.19
2517 4281 1.301322 GCGGATGCTCTCTTAGGCC 60.301 63.158 0.00 0.00 38.39 5.19
2518 4282 0.878086 GTGCGGATGCTCTCTTAGGC 60.878 60.000 0.00 0.00 43.34 3.93
2519 4283 0.249657 GGTGCGGATGCTCTCTTAGG 60.250 60.000 0.00 0.00 43.34 2.69
2520 4284 0.249657 GGGTGCGGATGCTCTCTTAG 60.250 60.000 0.00 0.00 43.34 2.18
2521 4285 0.687757 AGGGTGCGGATGCTCTCTTA 60.688 55.000 0.00 0.00 42.60 2.10
2522 4286 1.992277 AGGGTGCGGATGCTCTCTT 60.992 57.895 0.00 0.00 42.60 2.85
2533 4297 1.146041 TATGGCTGCTAAGGGTGCG 59.854 57.895 0.00 0.00 0.00 5.34
2586 4351 9.860898 AAATGAAGCTTAAAGATGTAATTGGAC 57.139 29.630 0.00 0.00 0.00 4.02
2588 4353 8.598075 GCAAATGAAGCTTAAAGATGTAATTGG 58.402 33.333 0.00 0.00 0.00 3.16
2591 4356 7.839907 TGGCAAATGAAGCTTAAAGATGTAAT 58.160 30.769 0.00 0.00 0.00 1.89
2670 4435 7.975866 AATCAGTTCATGCATATCGTTTTTC 57.024 32.000 0.00 0.00 0.00 2.29
2671 4436 9.853555 TTAAATCAGTTCATGCATATCGTTTTT 57.146 25.926 0.00 0.00 0.00 1.94
2672 4437 9.853555 TTTAAATCAGTTCATGCATATCGTTTT 57.146 25.926 0.00 0.00 0.00 2.43
2878 4643 8.908786 TCTGAACATGAATGAAGTACTTCTTT 57.091 30.769 30.47 29.00 40.14 2.52
2879 4644 8.153550 ACTCTGAACATGAATGAAGTACTTCTT 58.846 33.333 30.47 23.53 40.14 2.52
2881 4646 7.897575 ACTCTGAACATGAATGAAGTACTTC 57.102 36.000 25.73 25.73 39.91 3.01
2882 4647 8.682936 AAACTCTGAACATGAATGAAGTACTT 57.317 30.769 8.13 8.13 0.00 2.24
2883 4648 7.933577 TGAAACTCTGAACATGAATGAAGTACT 59.066 33.333 0.00 0.00 0.00 2.73
2884 4649 8.087982 TGAAACTCTGAACATGAATGAAGTAC 57.912 34.615 0.00 0.00 0.00 2.73
2885 4650 8.150296 TCTGAAACTCTGAACATGAATGAAGTA 58.850 33.333 0.00 0.00 0.00 2.24
2886 4651 6.994496 TCTGAAACTCTGAACATGAATGAAGT 59.006 34.615 0.00 0.00 0.00 3.01
2887 4652 7.172875 AGTCTGAAACTCTGAACATGAATGAAG 59.827 37.037 0.00 0.00 30.02 3.02
2988 4753 3.004524 GGTGGTAGGAGTCTATTGCTACG 59.995 52.174 0.00 0.00 41.35 3.51
3360 5128 1.812571 ACGAATGGTTAGCTGGCTTTG 59.187 47.619 0.00 0.00 0.00 2.77
3361 5129 2.200373 ACGAATGGTTAGCTGGCTTT 57.800 45.000 0.00 0.00 0.00 3.51
3362 5130 2.200373 AACGAATGGTTAGCTGGCTT 57.800 45.000 0.00 0.00 37.00 4.35
3390 5160 2.863740 GTTTGCAAGTTTTGGCTGTACC 59.136 45.455 0.00 0.00 39.84 3.34
3391 5161 2.863740 GGTTTGCAAGTTTTGGCTGTAC 59.136 45.455 0.00 0.00 0.00 2.90
3428 5198 1.416243 AGTGTGTCAGGGTTTCGGTA 58.584 50.000 0.00 0.00 0.00 4.02
4198 5968 6.659242 ACCATAGTTCTTCACCTGTATTTTGG 59.341 38.462 0.00 0.00 0.00 3.28
4309 6079 2.948979 CTGGTGTTTTGGTTCTACTGCA 59.051 45.455 0.00 0.00 0.00 4.41
4323 6093 3.317993 GTGTAGGCAATGTTTCTGGTGTT 59.682 43.478 0.00 0.00 0.00 3.32
4375 6145 8.373048 ACTGACAGTTTTGTATACATCGAAAA 57.627 30.769 6.36 1.36 37.76 2.29
4485 6258 9.593134 GGCAAAATGTATGGATGTTTGTTAATA 57.407 29.630 0.00 0.00 32.89 0.98
4958 6731 9.152595 GTACTGTAGCTTTCTTTAGTATTGCTT 57.847 33.333 0.00 0.00 0.00 3.91
5050 6823 3.991121 GCGGAGAAACTATTAGCTCATCC 59.009 47.826 0.00 0.00 0.00 3.51
5052 6825 4.672587 TGCGGAGAAACTATTAGCTCAT 57.327 40.909 0.00 0.00 0.00 2.90
5143 6929 5.868801 GGGTTACAAATGTCCAACATGAATG 59.131 40.000 0.00 0.00 37.97 2.67
5374 7265 5.981088 ATTTCATCAACACCTGCAATACA 57.019 34.783 0.00 0.00 0.00 2.29
5375 7266 7.812191 TGTTAATTTCATCAACACCTGCAATAC 59.188 33.333 0.00 0.00 0.00 1.89
5495 7386 8.988064 TCTACATGTAGTCAATCTTCAAACTC 57.012 34.615 27.83 0.00 34.84 3.01
5598 7494 2.939103 CCTGCGCCCATAATATAAGAGC 59.061 50.000 4.18 0.00 0.00 4.09
5602 7498 2.910319 ACTCCCTGCGCCCATAATATAA 59.090 45.455 4.18 0.00 0.00 0.98
5616 7512 6.949352 AAAGCATTGTGATATTACTCCCTG 57.051 37.500 0.00 0.00 0.00 4.45
5950 7849 3.093057 AGGTACAAGTGAGCTACTCAGG 58.907 50.000 0.00 0.00 41.46 3.86
6004 8021 4.083324 ACATTGGAAACAGTAGCATGTTCG 60.083 41.667 0.00 0.00 42.49 3.95
6061 8078 0.813610 TTGGTATGCGATCAAGGCGG 60.814 55.000 0.00 0.00 0.00 6.13
6113 8131 7.364522 TCTATTGCTTGTTTAGTGCTTACAG 57.635 36.000 0.00 0.00 0.00 2.74
6176 8194 3.084786 AGGCCTGATTTCAGTGCTAAAC 58.915 45.455 3.11 4.90 42.27 2.01
6260 8278 9.480053 TCATTTCAATCAAGTTCCTGAAAAATC 57.520 29.630 7.33 0.00 40.21 2.17
6312 8330 2.290641 GGCCGGTGAATAATGTCATGTC 59.709 50.000 1.90 0.00 0.00 3.06
6315 8333 2.727123 TGGCCGGTGAATAATGTCAT 57.273 45.000 1.90 0.00 0.00 3.06
6350 8368 1.148310 ACGCAACATGAGTGCAGTAC 58.852 50.000 20.69 0.00 0.00 2.73
6420 8438 9.616156 ATGGCTTTAATTGCATTTTGAATATCA 57.384 25.926 0.00 0.00 0.00 2.15
6482 8501 3.814005 ACGTGTAGTCCTTGTTCTTGT 57.186 42.857 0.00 0.00 0.00 3.16
6498 8517 8.822855 TCTTATGGTATATACTTTTGCAACGTG 58.177 33.333 12.54 0.00 0.00 4.49
6547 8691 6.429078 ACCTTCGTCCCTGAACTAAAATAAAC 59.571 38.462 0.00 0.00 0.00 2.01
6556 8700 2.005370 TGTACCTTCGTCCCTGAACT 57.995 50.000 0.00 0.00 0.00 3.01
6637 8781 5.518128 CGATAGCAGACCAGTGCATATAATC 59.482 44.000 0.00 0.00 46.60 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.