Multiple sequence alignment - TraesCS7D01G227000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G227000 chr7D 100.000 4982 0 0 1 4982 187099997 187104978 0.000000e+00 9201.0
1 TraesCS7D01G227000 chr7D 93.878 49 1 2 4935 4982 60588936 60588889 6.920000e-09 73.1
2 TraesCS7D01G227000 chr7D 89.286 56 3 3 4928 4982 161480220 161480273 3.220000e-07 67.6
3 TraesCS7D01G227000 chr7A 94.994 5014 185 35 15 4982 198006953 198001960 0.000000e+00 7808.0
4 TraesCS7D01G227000 chr7B 94.520 4069 149 41 1 4025 329847479 329851517 0.000000e+00 6211.0
5 TraesCS7D01G227000 chr7B 95.622 571 23 2 4024 4593 329851641 329852210 0.000000e+00 915.0
6 TraesCS7D01G227000 chr7B 96.330 327 9 3 4620 4945 329852355 329852679 7.340000e-148 534.0
7 TraesCS7D01G227000 chr7B 89.286 56 3 3 4928 4982 123782092 123782145 3.220000e-07 67.6
8 TraesCS7D01G227000 chr5B 93.878 49 1 2 4935 4982 647887071 647887118 6.920000e-09 73.1
9 TraesCS7D01G227000 chr6D 93.750 48 1 2 4936 4982 392274282 392274236 2.490000e-08 71.3
10 TraesCS7D01G227000 chr6A 93.750 48 1 2 4936 4982 538099198 538099152 2.490000e-08 71.3
11 TraesCS7D01G227000 chrUn 93.617 47 1 2 4937 4982 65138959 65138914 8.950000e-08 69.4
12 TraesCS7D01G227000 chr5D 87.719 57 4 3 4927 4982 438690480 438690534 4.160000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G227000 chr7D 187099997 187104978 4981 False 9201.000000 9201 100.000000 1 4982 1 chr7D.!!$F2 4981
1 TraesCS7D01G227000 chr7A 198001960 198006953 4993 True 7808.000000 7808 94.994000 15 4982 1 chr7A.!!$R1 4967
2 TraesCS7D01G227000 chr7B 329847479 329852679 5200 False 2553.333333 6211 95.490667 1 4945 3 chr7B.!!$F2 4944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 881 0.179073 CATCTGGCCCACTAGGTTCG 60.179 60.000 0.0 0.0 38.26 3.95 F
1317 1359 0.037232 AGTGTCCTTAGTTCCGCAGC 60.037 55.000 0.0 0.0 0.00 5.25 F
1327 1375 0.733150 GTTCCGCAGCCCACTATTTC 59.267 55.000 0.0 0.0 0.00 2.17 F
1331 1379 1.134521 CCGCAGCCCACTATTTCTGTA 60.135 52.381 0.0 0.0 0.00 2.74 F
2304 2357 1.475930 GCTAATCCTCCTTCCCTGCAC 60.476 57.143 0.0 0.0 0.00 4.57 F
2915 2968 5.064707 ACGATGATAGTATTGTTGTTGCACC 59.935 40.000 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2650 2703 1.079127 CAGTTGGGGCGTTCTCGAT 60.079 57.895 0.00 0.00 39.71 3.59 R
2908 2961 0.593128 CAGCCTTGTACAGGTGCAAC 59.407 55.000 16.68 0.00 46.07 4.17 R
2915 2968 3.780925 GCAAAGCAGCCTTGTACAG 57.219 52.632 5.63 0.00 0.00 2.74 R
3348 3403 1.070134 AGCCTTCAAGACAACGCTACA 59.930 47.619 0.00 0.00 0.00 2.74 R
3529 3584 2.860735 CAGCTCCATACGCTTAACTGAC 59.139 50.000 0.00 0.00 35.07 3.51 R
4231 4415 3.011566 TGACATTATTCACCGGCCAAT 57.988 42.857 0.00 1.93 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 3.243468 GGATTAAGTAGACGAGACTGCCC 60.243 52.174 0.00 0.00 0.00 5.36
73 79 1.069906 GCCCTCAGCGCATAATTAACG 60.070 52.381 11.47 6.84 0.00 3.18
101 107 0.883814 GAGCAGGGCATCGATCTTGG 60.884 60.000 0.00 0.00 0.00 3.61
385 395 4.638865 AGCAGGGGTCGTGTTTAATAATTC 59.361 41.667 0.00 0.00 0.00 2.17
393 408 8.060090 GGGTCGTGTTTAATAATTCGATACTTG 58.940 37.037 0.00 0.00 0.00 3.16
405 420 1.072331 CGATACTTGGGGAAGGGGATG 59.928 57.143 0.00 0.00 0.00 3.51
571 587 4.193334 CCGTCATCTCGGCAGCGA 62.193 66.667 0.00 0.00 43.96 4.93
605 622 0.396278 GATTGGAAGCTTGGAGGGGG 60.396 60.000 2.10 0.00 0.00 5.40
654 671 0.244178 GAAAGAAGACGGCCGACTCT 59.756 55.000 35.90 25.20 0.00 3.24
667 685 1.856597 CCGACTCTTTTATTACCGCGG 59.143 52.381 26.86 26.86 0.00 6.46
783 802 0.379669 TCTACGCGAACCGGAATCTC 59.620 55.000 15.93 0.00 42.52 2.75
854 877 0.692419 AGACCATCTGGCCCACTAGG 60.692 60.000 0.00 0.00 39.32 3.02
858 881 0.179073 CATCTGGCCCACTAGGTTCG 60.179 60.000 0.00 0.00 38.26 3.95
864 887 0.804933 GCCCACTAGGTTCGCGTAAG 60.805 60.000 5.77 0.06 38.26 2.34
1077 1116 3.371063 GAGTGGCTGGTCGACCGA 61.371 66.667 28.70 16.89 39.43 4.69
1288 1327 4.808649 CGAAACCCTCGCCTAGTC 57.191 61.111 0.00 0.00 41.49 2.59
1289 1328 1.888018 CGAAACCCTCGCCTAGTCA 59.112 57.895 0.00 0.00 41.49 3.41
1293 1332 1.349067 AACCCTCGCCTAGTCACTTT 58.651 50.000 0.00 0.00 0.00 2.66
1297 1339 2.527100 CCTCGCCTAGTCACTTTTACG 58.473 52.381 0.00 0.00 0.00 3.18
1300 1342 2.816087 TCGCCTAGTCACTTTTACGAGT 59.184 45.455 0.00 0.00 0.00 4.18
1301 1343 2.915463 CGCCTAGTCACTTTTACGAGTG 59.085 50.000 0.00 0.00 46.58 3.51
1317 1359 0.037232 AGTGTCCTTAGTTCCGCAGC 60.037 55.000 0.00 0.00 0.00 5.25
1324 1372 1.139058 CTTAGTTCCGCAGCCCACTAT 59.861 52.381 0.00 0.00 0.00 2.12
1327 1375 0.733150 GTTCCGCAGCCCACTATTTC 59.267 55.000 0.00 0.00 0.00 2.17
1331 1379 1.134521 CCGCAGCCCACTATTTCTGTA 60.135 52.381 0.00 0.00 0.00 2.74
1350 1398 7.284919 TCTGTATGCGTGGAATCTAATTCTA 57.715 36.000 0.00 0.00 39.24 2.10
1354 1402 8.803235 TGTATGCGTGGAATCTAATTCTATACT 58.197 33.333 0.00 0.00 39.24 2.12
1516 1566 5.522460 TGTTTAGATAAATGTACCTGCGAGC 59.478 40.000 0.00 0.00 0.00 5.03
1517 1567 3.819564 AGATAAATGTACCTGCGAGCA 57.180 42.857 0.00 0.00 0.00 4.26
1523 1575 3.479203 TACCTGCGAGCATGGGGG 61.479 66.667 14.67 8.47 0.00 5.40
1536 1588 2.362077 GCATGGGGGTTGACATATGTTC 59.638 50.000 10.30 4.23 0.00 3.18
1544 1596 4.581824 GGGTTGACATATGTTCTGATGCAT 59.418 41.667 10.30 0.00 0.00 3.96
1567 1619 2.092646 TGCTATGTTTAGGGCGAATGGT 60.093 45.455 0.00 0.00 0.00 3.55
1569 1621 4.202419 TGCTATGTTTAGGGCGAATGGTAT 60.202 41.667 0.00 0.00 0.00 2.73
1605 1657 5.649831 AGCTTATGAGAAGGACCATGTTTTC 59.350 40.000 0.00 0.00 0.00 2.29
1661 1713 9.587772 GAATGTGAACTATGACATGTACTAAGT 57.412 33.333 0.00 0.00 33.03 2.24
1678 1730 7.670140 TGTACTAAGTCTTTCCTTGATCTCTCA 59.330 37.037 0.00 0.00 0.00 3.27
1682 1734 7.684937 AAGTCTTTCCTTGATCTCTCATTTG 57.315 36.000 0.00 0.00 0.00 2.32
1683 1735 6.179040 AGTCTTTCCTTGATCTCTCATTTGG 58.821 40.000 0.00 0.00 0.00 3.28
1684 1736 5.356470 GTCTTTCCTTGATCTCTCATTTGGG 59.644 44.000 0.00 0.00 0.00 4.12
1690 1742 7.413446 TCCTTGATCTCTCATTTGGGTTATTT 58.587 34.615 0.00 0.00 0.00 1.40
1931 1984 2.434336 ACTCTTTTGGCCTTTTGGGTTC 59.566 45.455 3.32 0.00 40.82 3.62
2222 2275 8.946085 TGCTATACAACTCCTGTGAATTTTAAG 58.054 33.333 0.00 0.00 39.20 1.85
2304 2357 1.475930 GCTAATCCTCCTTCCCTGCAC 60.476 57.143 0.00 0.00 0.00 4.57
2522 2575 6.484364 TGATGTCAATATAGAGTTGGCAGA 57.516 37.500 0.00 0.00 43.53 4.26
2650 2703 8.306313 TGATAATCCTGAAGAAAGTGCTACTA 57.694 34.615 0.00 0.00 0.00 1.82
2740 2793 8.577296 TGGAGAAGGAGTACAGAAATAATATCG 58.423 37.037 0.00 0.00 0.00 2.92
2915 2968 5.064707 ACGATGATAGTATTGTTGTTGCACC 59.935 40.000 0.00 0.00 0.00 5.01
2963 3016 8.749354 CCTGTCCCTTTTTAGTAATAAGCAAAT 58.251 33.333 7.39 0.00 0.00 2.32
3348 3403 7.711339 GCTACAGTAGTGCACTTATTATTCCTT 59.289 37.037 27.06 0.00 34.26 3.36
3391 3446 7.084486 GCTCAAATTAACACAGTTTTCCCTAG 58.916 38.462 0.00 0.00 0.00 3.02
3440 3495 5.473504 TCCTTAACTGACATTGCTTCCTTTC 59.526 40.000 0.00 0.00 0.00 2.62
3529 3584 2.352960 GCGAGAAGGCTTAGGTGATTTG 59.647 50.000 0.00 0.00 0.00 2.32
3623 3680 9.982291 TTTTTCTATCATAGCGTTTGATTACAC 57.018 29.630 4.74 0.00 35.50 2.90
3699 3756 3.254166 CCATCCAAAGTGGTCTTGTGAAG 59.746 47.826 0.00 0.00 39.03 3.02
3703 3760 3.066760 CCAAAGTGGTCTTGTGAAGAACC 59.933 47.826 0.00 0.00 44.76 3.62
3930 3988 5.518128 CGATAGCAGACCAGTGCATATAATC 59.482 44.000 0.00 0.00 46.60 1.75
4011 4069 2.005370 TGTACCTTCGTCCCTGAACT 57.995 50.000 0.00 0.00 0.00 3.01
4020 4078 6.429078 ACCTTCGTCCCTGAACTAAAATAAAC 59.571 38.462 0.00 0.00 0.00 2.01
4069 4252 8.822855 TCTTATGGTATATACTTTTGCAACGTG 58.177 33.333 12.54 0.00 0.00 4.49
4085 4268 3.814005 ACGTGTAGTCCTTGTTCTTGT 57.186 42.857 0.00 0.00 0.00 3.16
4147 4331 9.616156 ATGGCTTTAATTGCATTTTGAATATCA 57.384 25.926 0.00 0.00 0.00 2.15
4217 4401 1.148310 ACGCAACATGAGTGCAGTAC 58.852 50.000 20.69 0.00 0.00 2.73
4252 4436 2.727123 TGGCCGGTGAATAATGTCAT 57.273 45.000 1.90 0.00 0.00 3.06
4255 4439 2.290641 GGCCGGTGAATAATGTCATGTC 59.709 50.000 1.90 0.00 0.00 3.06
4307 4491 9.480053 TCATTTCAATCAAGTTCCTGAAAAATC 57.520 29.630 7.33 0.00 40.21 2.17
4391 4575 3.084786 AGGCCTGATTTCAGTGCTAAAC 58.915 45.455 3.11 4.90 42.27 2.01
4454 4638 7.364522 TCTATTGCTTGTTTAGTGCTTACAG 57.635 36.000 0.00 0.00 0.00 2.74
4506 4691 0.813610 TTGGTATGCGATCAAGGCGG 60.814 55.000 0.00 0.00 0.00 6.13
4563 4748 4.083324 ACATTGGAAACAGTAGCATGTTCG 60.083 41.667 0.00 0.00 42.49 3.95
4617 4802 3.093057 AGGTACAAGTGAGCTACTCAGG 58.907 50.000 0.00 0.00 41.46 3.86
4951 5257 6.949352 AAAGCATTGTGATATTACTCCCTG 57.051 37.500 0.00 0.00 0.00 4.45
4965 5271 2.910319 ACTCCCTGCGCCCATAATATAA 59.090 45.455 4.18 0.00 0.00 0.98
4969 5275 2.939103 CCTGCGCCCATAATATAAGAGC 59.061 50.000 4.18 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 1.032657 GCTGAGGGCAGTCTCGTCTA 61.033 60.000 0.00 0.00 44.17 2.59
56 58 3.796717 TGAGTCGTTAATTATGCGCTGAG 59.203 43.478 9.73 0.00 0.00 3.35
62 64 6.486248 TGCTCAATTGAGTCGTTAATTATGC 58.514 36.000 30.88 16.39 43.85 3.14
73 79 1.674962 GATGCCCTGCTCAATTGAGTC 59.325 52.381 30.88 23.78 43.85 3.36
385 395 1.072331 CATCCCCTTCCCCAAGTATCG 59.928 57.143 0.00 0.00 0.00 2.92
393 408 1.774631 CCTACCCATCCCCTTCCCC 60.775 68.421 0.00 0.00 0.00 4.81
405 420 2.688299 TGCCCCGGTAACCTACCC 60.688 66.667 0.00 0.00 46.27 3.69
571 587 1.065854 CCAATCTTCCTTCTCGCCTGT 60.066 52.381 0.00 0.00 0.00 4.00
605 622 0.468771 CCAGCAATCCCCATCTTCCC 60.469 60.000 0.00 0.00 0.00 3.97
606 623 0.468771 CCCAGCAATCCCCATCTTCC 60.469 60.000 0.00 0.00 0.00 3.46
607 624 0.468771 CCCCAGCAATCCCCATCTTC 60.469 60.000 0.00 0.00 0.00 2.87
654 671 2.808244 CCGTAGACCGCGGTAATAAAA 58.192 47.619 34.36 10.25 43.84 1.52
667 685 2.585247 GCACGCCATCCCGTAGAC 60.585 66.667 0.00 0.00 39.83 2.59
813 832 3.374764 TGGGTCTCTTCTGCTTATGCTA 58.625 45.455 1.96 0.00 40.48 3.49
854 877 2.505866 CAGAATTTGGCTTACGCGAAC 58.494 47.619 15.93 0.00 33.44 3.95
858 881 1.985684 GTTGCAGAATTTGGCTTACGC 59.014 47.619 4.27 0.00 0.00 4.42
864 887 2.437850 CAGCGTTGCAGAATTTGGC 58.562 52.632 0.00 0.00 0.00 4.52
878 901 1.059994 GCGAGTCTGATTTGCAGCG 59.940 57.895 7.45 0.00 44.52 5.18
914 948 0.911769 AGATGGGGACGAAAGCATGA 59.088 50.000 0.00 0.00 0.00 3.07
918 952 0.748367 GGGAAGATGGGGACGAAAGC 60.748 60.000 0.00 0.00 0.00 3.51
1201 1240 1.406860 GCTAAGCCTGAGAGGGAGGG 61.407 65.000 0.00 0.00 35.37 4.30
1272 1311 0.896226 AGTGACTAGGCGAGGGTTTC 59.104 55.000 0.00 0.00 0.00 2.78
1289 1328 5.536260 GGAACTAAGGACACTCGTAAAAGT 58.464 41.667 0.00 0.00 0.00 2.66
1293 1332 2.095059 GCGGAACTAAGGACACTCGTAA 60.095 50.000 0.00 0.00 0.00 3.18
1297 1339 1.997669 CTGCGGAACTAAGGACACTC 58.002 55.000 0.00 0.00 0.00 3.51
1300 1342 1.295423 GGCTGCGGAACTAAGGACA 59.705 57.895 0.00 0.00 0.00 4.02
1301 1343 1.449778 GGGCTGCGGAACTAAGGAC 60.450 63.158 0.00 0.00 0.00 3.85
1317 1359 2.872245 CCACGCATACAGAAATAGTGGG 59.128 50.000 3.98 0.00 42.65 4.61
1324 1372 7.047891 AGAATTAGATTCCACGCATACAGAAA 58.952 34.615 0.00 0.00 40.13 2.52
1327 1375 9.077674 GTATAGAATTAGATTCCACGCATACAG 57.922 37.037 0.00 0.00 40.13 2.74
1331 1379 8.150945 ACAAGTATAGAATTAGATTCCACGCAT 58.849 33.333 0.00 0.00 40.13 4.73
1350 1398 4.566987 GGACGAAAGGAGAACACAAGTAT 58.433 43.478 0.00 0.00 0.00 2.12
1354 1402 1.539496 CCGGACGAAAGGAGAACACAA 60.539 52.381 0.00 0.00 0.00 3.33
1394 1442 6.370166 GGAGTATGCTGTATATCTTCTTTGCC 59.630 42.308 0.00 0.00 0.00 4.52
1486 1534 9.855021 GCAGGTACATTTATCTAAACAACAAAT 57.145 29.630 0.00 0.00 0.00 2.32
1508 1558 4.431131 AACCCCCATGCTCGCAGG 62.431 66.667 0.00 0.00 0.00 4.85
1516 1566 3.633525 CAGAACATATGTCAACCCCCATG 59.366 47.826 9.23 0.00 0.00 3.66
1517 1567 3.527253 TCAGAACATATGTCAACCCCCAT 59.473 43.478 9.23 0.00 0.00 4.00
1536 1588 5.163683 GCCCTAAACATAGCATATGCATCAG 60.164 44.000 28.62 17.05 45.16 2.90
1544 1596 4.202419 ACCATTCGCCCTAAACATAGCATA 60.202 41.667 0.00 0.00 0.00 3.14
1548 1600 5.120208 CGAATACCATTCGCCCTAAACATAG 59.880 44.000 8.21 0.00 35.05 2.23
1549 1601 4.992319 CGAATACCATTCGCCCTAAACATA 59.008 41.667 8.21 0.00 35.05 2.29
1567 1619 9.181805 CTTCTCATAAGCTTTAACGATCGAATA 57.818 33.333 24.34 11.56 0.00 1.75
1569 1621 6.475727 CCTTCTCATAAGCTTTAACGATCGAA 59.524 38.462 24.34 6.46 0.00 3.71
1661 1713 5.014544 ACCCAAATGAGAGATCAAGGAAAGA 59.985 40.000 0.00 0.00 0.00 2.52
1678 1730 7.513856 AGGTTAAGCACAAAAATAACCCAAAT 58.486 30.769 7.52 0.00 45.40 2.32
1682 1734 6.097356 GCTAGGTTAAGCACAAAAATAACCC 58.903 40.000 7.52 0.00 45.40 4.11
1730 1783 6.289834 TGGTCTTGAGGTAACGAAAATAACA 58.710 36.000 0.00 0.00 46.39 2.41
1734 1787 7.335627 TGATATGGTCTTGAGGTAACGAAAAT 58.664 34.615 0.00 0.00 46.39 1.82
1738 1791 5.198207 TCTGATATGGTCTTGAGGTAACGA 58.802 41.667 0.00 0.00 46.39 3.85
1739 1792 5.508153 CCTCTGATATGGTCTTGAGGTAACG 60.508 48.000 0.00 0.00 40.31 3.18
1740 1793 5.598830 TCCTCTGATATGGTCTTGAGGTAAC 59.401 44.000 0.00 0.00 42.95 2.50
1741 1794 5.777449 TCCTCTGATATGGTCTTGAGGTAA 58.223 41.667 0.00 0.00 42.95 2.85
1931 1984 2.562298 AGCAACAATACCAACACCCATG 59.438 45.455 0.00 0.00 0.00 3.66
2222 2275 7.121315 AGTTCTCCTAAATCAATAAACACAGGC 59.879 37.037 0.00 0.00 0.00 4.85
2304 2357 4.106197 GCACCTCTTTACATACTGAGACG 58.894 47.826 0.00 0.00 0.00 4.18
2522 2575 3.118519 ACCAACACCGTAAGTTTCAGAGT 60.119 43.478 0.00 0.00 0.00 3.24
2531 2584 1.531149 CTGAAGCACCAACACCGTAAG 59.469 52.381 0.00 0.00 0.00 2.34
2650 2703 1.079127 CAGTTGGGGCGTTCTCGAT 60.079 57.895 0.00 0.00 39.71 3.59
2740 2793 8.398665 GTCAAATACCTCAAGTAAATCATCCAC 58.601 37.037 0.00 0.00 33.70 4.02
2908 2961 0.593128 CAGCCTTGTACAGGTGCAAC 59.407 55.000 16.68 0.00 46.07 4.17
2915 2968 3.780925 GCAAAGCAGCCTTGTACAG 57.219 52.632 5.63 0.00 0.00 2.74
3348 3403 1.070134 AGCCTTCAAGACAACGCTACA 59.930 47.619 0.00 0.00 0.00 2.74
3529 3584 2.860735 CAGCTCCATACGCTTAACTGAC 59.139 50.000 0.00 0.00 35.07 3.51
3623 3680 6.362551 CGGACCACTGAGAACAATAATATACG 59.637 42.308 0.00 0.00 0.00 3.06
4020 4078 8.539770 AGATATTCAACCTGCTTTACATATCG 57.460 34.615 0.00 0.00 30.76 2.92
4069 4252 7.440523 AAATCATCACAAGAACAAGGACTAC 57.559 36.000 0.00 0.00 0.00 2.73
4085 4268 8.529424 AGAAGATTTATGGCAGAAAATCATCA 57.471 30.769 27.16 4.90 42.14 3.07
4147 4331 5.543405 AGAGCATATTCATAAGGCTGAGTCT 59.457 40.000 0.00 0.00 34.44 3.24
4217 4401 3.181397 CGGCCAATTTAACTGCATTCTG 58.819 45.455 2.24 0.00 0.00 3.02
4231 4415 3.011566 TGACATTATTCACCGGCCAAT 57.988 42.857 0.00 1.93 0.00 3.16
4307 4491 3.243873 TGAGCGATCAAATACCAGCTAGG 60.244 47.826 0.00 0.00 45.67 3.02
4391 4575 6.707608 TCCAGTAAATCACAGCATAGCAATAG 59.292 38.462 0.00 0.00 0.00 1.73
4454 4638 5.459762 CGTATTGGAATGAAAACATGGCATC 59.540 40.000 0.00 0.00 0.00 3.91
4563 4748 6.844097 TGGGTAACTTCATTGTAATTTCCC 57.156 37.500 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.