Multiple sequence alignment - TraesCS7D01G226800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G226800 chr7D 100.000 2408 0 0 1 2408 186831247 186828840 0.000000e+00 4447.0
1 TraesCS7D01G226800 chr7B 94.160 2072 82 12 352 2408 329797697 329795650 0.000000e+00 3120.0
2 TraesCS7D01G226800 chr7A 91.747 2072 88 27 379 2408 198189386 198191416 0.000000e+00 2802.0
3 TraesCS7D01G226800 chr7A 94.070 978 48 8 620 1593 198025718 198026689 0.000000e+00 1476.0
4 TraesCS7D01G226800 chr7A 90.336 238 19 3 354 591 198016976 198017209 2.320000e-80 309.0
5 TraesCS7D01G226800 chr6B 89.583 96 10 0 1 96 512253824 512253919 3.250000e-24 122.0
6 TraesCS7D01G226800 chr6B 87.059 85 10 1 16 100 686414049 686414132 7.090000e-16 95.3
7 TraesCS7D01G226800 chr5D 90.123 81 8 0 26 106 437756748 437756668 3.270000e-19 106.0
8 TraesCS7D01G226800 chr5D 82.456 114 20 0 26 139 40888861 40888974 1.520000e-17 100.0
9 TraesCS7D01G226800 chr5D 78.014 141 23 3 3 135 489773750 489773890 5.520000e-12 82.4
10 TraesCS7D01G226800 chr4B 90.789 76 5 2 26 100 599327111 599327037 1.520000e-17 100.0
11 TraesCS7D01G226800 chr1A 83.000 100 17 0 1 100 501999244 501999145 9.170000e-15 91.6
12 TraesCS7D01G226800 chr2A 78.169 142 30 1 1 142 194476336 194476196 3.300000e-14 89.8
13 TraesCS7D01G226800 chr4A 90.625 64 5 1 33 96 146709589 146709651 1.530000e-12 84.2
14 TraesCS7D01G226800 chr2B 85.714 70 9 1 1 69 531566986 531567055 3.320000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G226800 chr7D 186828840 186831247 2407 True 4447 4447 100.000 1 2408 1 chr7D.!!$R1 2407
1 TraesCS7D01G226800 chr7B 329795650 329797697 2047 True 3120 3120 94.160 352 2408 1 chr7B.!!$R1 2056
2 TraesCS7D01G226800 chr7A 198189386 198191416 2030 False 2802 2802 91.747 379 2408 1 chr7A.!!$F3 2029
3 TraesCS7D01G226800 chr7A 198025718 198026689 971 False 1476 1476 94.070 620 1593 1 chr7A.!!$F2 973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.032130 ATGCGCCCACAGACGTATAG 59.968 55.0 4.18 0.0 32.75 1.31 F
190 191 0.036765 GCCCGACATTGTGTACCAGA 60.037 55.0 0.00 0.0 0.00 3.86 F
233 234 0.108992 TAGTTTGAGCCACGCTACGG 60.109 55.0 0.00 0.0 39.88 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1164 1169 0.319986 TGCATGCACAGCAACAATGG 60.320 50.000 18.46 0.0 43.62 3.16 R
1278 1283 2.099098 GGCATCTTGGGGAACGTAAATG 59.901 50.000 0.00 0.0 0.00 2.32 R
2219 2255 1.336609 GCTAACCCGGGCTATAAGACG 60.337 57.143 24.08 0.1 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.291585 GCGACATTGGCTTTCATAATCG 58.708 45.455 0.00 0.00 0.00 3.34
22 23 3.002246 GCGACATTGGCTTTCATAATCGA 59.998 43.478 0.00 0.00 0.00 3.59
23 24 4.518217 CGACATTGGCTTTCATAATCGAC 58.482 43.478 0.00 0.00 0.00 4.20
24 25 4.518217 GACATTGGCTTTCATAATCGACG 58.482 43.478 0.00 0.00 0.00 5.12
25 26 3.938963 ACATTGGCTTTCATAATCGACGT 59.061 39.130 0.00 0.00 0.00 4.34
26 27 4.201812 ACATTGGCTTTCATAATCGACGTG 60.202 41.667 0.00 0.00 0.00 4.49
27 28 1.663643 TGGCTTTCATAATCGACGTGC 59.336 47.619 0.00 0.00 0.00 5.34
28 29 1.663643 GGCTTTCATAATCGACGTGCA 59.336 47.619 0.00 0.00 0.00 4.57
29 30 2.287915 GGCTTTCATAATCGACGTGCAT 59.712 45.455 0.00 0.00 0.00 3.96
30 31 3.283256 GCTTTCATAATCGACGTGCATG 58.717 45.455 3.82 3.82 0.00 4.06
31 32 3.846023 GCTTTCATAATCGACGTGCATGG 60.846 47.826 11.36 0.00 0.00 3.66
32 33 2.880963 TCATAATCGACGTGCATGGA 57.119 45.000 11.36 0.00 0.00 3.41
33 34 3.385193 TCATAATCGACGTGCATGGAT 57.615 42.857 11.36 1.23 0.00 3.41
34 35 3.727726 TCATAATCGACGTGCATGGATT 58.272 40.909 11.36 12.35 32.52 3.01
35 36 4.126437 TCATAATCGACGTGCATGGATTT 58.874 39.130 11.36 1.28 30.65 2.17
36 37 2.830772 AATCGACGTGCATGGATTTG 57.169 45.000 11.36 0.00 0.00 2.32
37 38 2.022764 ATCGACGTGCATGGATTTGA 57.977 45.000 11.36 0.00 0.00 2.69
38 39 1.358877 TCGACGTGCATGGATTTGAG 58.641 50.000 11.36 0.00 0.00 3.02
39 40 1.067213 TCGACGTGCATGGATTTGAGA 60.067 47.619 11.36 0.00 0.00 3.27
40 41 1.325640 CGACGTGCATGGATTTGAGAG 59.674 52.381 11.36 0.00 0.00 3.20
41 42 2.350522 GACGTGCATGGATTTGAGAGT 58.649 47.619 11.36 0.00 0.00 3.24
42 43 2.349886 GACGTGCATGGATTTGAGAGTC 59.650 50.000 11.36 0.00 0.00 3.36
43 44 1.667724 CGTGCATGGATTTGAGAGTCC 59.332 52.381 0.00 0.00 35.02 3.85
44 45 1.667724 GTGCATGGATTTGAGAGTCCG 59.332 52.381 0.00 0.00 37.32 4.79
45 46 1.303309 GCATGGATTTGAGAGTCCGG 58.697 55.000 0.00 0.00 37.32 5.14
46 47 1.959042 CATGGATTTGAGAGTCCGGG 58.041 55.000 0.00 0.00 37.32 5.73
47 48 1.210478 CATGGATTTGAGAGTCCGGGT 59.790 52.381 0.00 0.00 37.32 5.28
48 49 1.358152 TGGATTTGAGAGTCCGGGTT 58.642 50.000 0.00 0.00 37.32 4.11
49 50 1.702957 TGGATTTGAGAGTCCGGGTTT 59.297 47.619 0.00 0.00 37.32 3.27
50 51 2.084546 GGATTTGAGAGTCCGGGTTTG 58.915 52.381 0.00 0.00 0.00 2.93
51 52 2.290071 GGATTTGAGAGTCCGGGTTTGA 60.290 50.000 0.00 0.00 0.00 2.69
52 53 2.543777 TTTGAGAGTCCGGGTTTGAG 57.456 50.000 0.00 0.00 0.00 3.02
53 54 1.712056 TTGAGAGTCCGGGTTTGAGA 58.288 50.000 0.00 0.00 0.00 3.27
54 55 1.938585 TGAGAGTCCGGGTTTGAGAT 58.061 50.000 0.00 0.00 0.00 2.75
55 56 3.095912 TGAGAGTCCGGGTTTGAGATA 57.904 47.619 0.00 0.00 0.00 1.98
56 57 3.643237 TGAGAGTCCGGGTTTGAGATAT 58.357 45.455 0.00 0.00 0.00 1.63
57 58 3.384789 TGAGAGTCCGGGTTTGAGATATG 59.615 47.826 0.00 0.00 0.00 1.78
58 59 3.375699 AGAGTCCGGGTTTGAGATATGT 58.624 45.455 0.00 0.00 0.00 2.29
59 60 3.133003 AGAGTCCGGGTTTGAGATATGTG 59.867 47.826 0.00 0.00 0.00 3.21
60 61 2.170607 AGTCCGGGTTTGAGATATGTGG 59.829 50.000 0.00 0.00 0.00 4.17
61 62 2.169769 GTCCGGGTTTGAGATATGTGGA 59.830 50.000 0.00 0.00 0.00 4.02
62 63 3.045634 TCCGGGTTTGAGATATGTGGAT 58.954 45.455 0.00 0.00 0.00 3.41
63 64 3.141398 CCGGGTTTGAGATATGTGGATG 58.859 50.000 0.00 0.00 0.00 3.51
64 65 2.549754 CGGGTTTGAGATATGTGGATGC 59.450 50.000 0.00 0.00 0.00 3.91
65 66 2.887152 GGGTTTGAGATATGTGGATGCC 59.113 50.000 0.00 0.00 0.00 4.40
66 67 2.549754 GGTTTGAGATATGTGGATGCCG 59.450 50.000 0.00 0.00 0.00 5.69
67 68 2.549064 TTGAGATATGTGGATGCCGG 57.451 50.000 0.00 0.00 0.00 6.13
68 69 1.715785 TGAGATATGTGGATGCCGGA 58.284 50.000 5.05 0.00 0.00 5.14
69 70 2.046292 TGAGATATGTGGATGCCGGAA 58.954 47.619 5.05 0.00 0.00 4.30
70 71 2.437651 TGAGATATGTGGATGCCGGAAA 59.562 45.455 5.05 0.00 0.00 3.13
71 72 3.072915 TGAGATATGTGGATGCCGGAAAT 59.927 43.478 5.05 0.00 0.00 2.17
72 73 3.415212 AGATATGTGGATGCCGGAAATG 58.585 45.455 5.05 0.00 0.00 2.32
73 74 3.072915 AGATATGTGGATGCCGGAAATGA 59.927 43.478 5.05 0.00 0.00 2.57
74 75 2.142356 ATGTGGATGCCGGAAATGAA 57.858 45.000 5.05 0.00 0.00 2.57
75 76 1.916506 TGTGGATGCCGGAAATGAAA 58.083 45.000 5.05 0.00 0.00 2.69
76 77 2.455557 TGTGGATGCCGGAAATGAAAT 58.544 42.857 5.05 0.00 0.00 2.17
77 78 3.625853 TGTGGATGCCGGAAATGAAATA 58.374 40.909 5.05 0.00 0.00 1.40
78 79 4.214310 TGTGGATGCCGGAAATGAAATAT 58.786 39.130 5.05 0.00 0.00 1.28
79 80 4.037803 TGTGGATGCCGGAAATGAAATATG 59.962 41.667 5.05 0.00 0.00 1.78
80 81 4.278170 GTGGATGCCGGAAATGAAATATGA 59.722 41.667 5.05 0.00 0.00 2.15
81 82 4.520111 TGGATGCCGGAAATGAAATATGAG 59.480 41.667 5.05 0.00 0.00 2.90
82 83 4.082571 GGATGCCGGAAATGAAATATGAGG 60.083 45.833 5.05 0.00 0.00 3.86
83 84 3.221771 TGCCGGAAATGAAATATGAGGG 58.778 45.455 5.05 0.00 0.00 4.30
84 85 2.029918 GCCGGAAATGAAATATGAGGGC 60.030 50.000 5.05 0.00 0.00 5.19
85 86 2.558359 CCGGAAATGAAATATGAGGGCC 59.442 50.000 0.00 0.00 0.00 5.80
86 87 2.558359 CGGAAATGAAATATGAGGGCCC 59.442 50.000 16.46 16.46 0.00 5.80
87 88 2.558359 GGAAATGAAATATGAGGGCCCG 59.442 50.000 18.44 0.00 0.00 6.13
88 89 3.222603 GAAATGAAATATGAGGGCCCGT 58.777 45.455 18.44 9.55 0.00 5.28
89 90 3.312736 AATGAAATATGAGGGCCCGTT 57.687 42.857 18.44 7.85 0.00 4.44
90 91 2.341846 TGAAATATGAGGGCCCGTTC 57.658 50.000 18.44 10.56 0.00 3.95
91 92 1.226746 GAAATATGAGGGCCCGTTCG 58.773 55.000 18.44 0.00 0.00 3.95
92 93 0.179029 AAATATGAGGGCCCGTTCGG 60.179 55.000 18.44 4.08 0.00 4.30
93 94 1.052124 AATATGAGGGCCCGTTCGGA 61.052 55.000 18.44 1.33 0.00 4.55
94 95 0.836400 ATATGAGGGCCCGTTCGGAT 60.836 55.000 18.44 3.89 0.00 4.18
95 96 1.754380 TATGAGGGCCCGTTCGGATG 61.754 60.000 18.44 0.00 0.00 3.51
96 97 3.782443 GAGGGCCCGTTCGGATGT 61.782 66.667 18.44 0.00 0.00 3.06
97 98 4.096003 AGGGCCCGTTCGGATGTG 62.096 66.667 18.44 0.00 0.00 3.21
98 99 4.404098 GGGCCCGTTCGGATGTGT 62.404 66.667 5.69 0.00 0.00 3.72
99 100 2.818274 GGCCCGTTCGGATGTGTC 60.818 66.667 13.08 0.00 0.00 3.67
100 101 2.047655 GCCCGTTCGGATGTGTCA 60.048 61.111 13.08 0.00 0.00 3.58
101 102 2.100631 GCCCGTTCGGATGTGTCAG 61.101 63.158 13.08 0.00 0.00 3.51
102 103 2.100631 CCCGTTCGGATGTGTCAGC 61.101 63.158 13.08 0.00 0.00 4.26
103 104 1.374125 CCGTTCGGATGTGTCAGCA 60.374 57.895 5.19 0.00 0.00 4.41
104 105 0.740868 CCGTTCGGATGTGTCAGCAT 60.741 55.000 5.19 0.00 0.00 3.79
105 106 0.371301 CGTTCGGATGTGTCAGCATG 59.629 55.000 0.00 0.00 37.54 4.06
106 107 1.442769 GTTCGGATGTGTCAGCATGT 58.557 50.000 0.00 0.00 37.40 3.21
107 108 1.129251 GTTCGGATGTGTCAGCATGTG 59.871 52.381 0.00 0.00 37.40 3.21
108 109 0.321346 TCGGATGTGTCAGCATGTGT 59.679 50.000 0.00 0.00 37.40 3.72
109 110 0.445043 CGGATGTGTCAGCATGTGTG 59.555 55.000 0.00 0.00 37.40 3.82
110 111 1.527034 GGATGTGTCAGCATGTGTGT 58.473 50.000 0.00 0.00 37.40 3.72
111 112 1.466167 GGATGTGTCAGCATGTGTGTC 59.534 52.381 0.00 0.00 37.40 3.67
112 113 1.466167 GATGTGTCAGCATGTGTGTCC 59.534 52.381 0.00 0.00 37.40 4.02
113 114 0.879839 TGTGTCAGCATGTGTGTCCG 60.880 55.000 0.00 0.00 37.40 4.79
114 115 0.599991 GTGTCAGCATGTGTGTCCGA 60.600 55.000 0.00 0.00 37.40 4.55
115 116 0.105778 TGTCAGCATGTGTGTCCGAA 59.894 50.000 0.00 0.00 37.40 4.30
116 117 1.270785 TGTCAGCATGTGTGTCCGAAT 60.271 47.619 0.00 0.00 37.40 3.34
117 118 1.129251 GTCAGCATGTGTGTCCGAATG 59.871 52.381 0.00 0.00 37.40 2.67
118 119 0.179181 CAGCATGTGTGTCCGAATGC 60.179 55.000 0.00 0.00 44.56 3.56
119 120 1.226101 GCATGTGTGTCCGAATGCG 60.226 57.895 0.00 0.00 36.41 4.73
120 121 1.226101 CATGTGTGTCCGAATGCGC 60.226 57.895 0.00 0.00 35.83 6.09
121 122 2.398554 ATGTGTGTCCGAATGCGCC 61.399 57.895 4.18 0.00 35.83 6.53
122 123 3.799755 GTGTGTCCGAATGCGCCC 61.800 66.667 4.18 0.00 35.83 6.13
123 124 4.321966 TGTGTCCGAATGCGCCCA 62.322 61.111 4.18 0.00 35.83 5.36
124 125 3.799755 GTGTCCGAATGCGCCCAC 61.800 66.667 4.18 0.00 35.83 4.61
125 126 4.321966 TGTCCGAATGCGCCCACA 62.322 61.111 4.18 0.00 35.83 4.17
126 127 3.499737 GTCCGAATGCGCCCACAG 61.500 66.667 4.18 0.00 35.83 3.66
127 128 3.700970 TCCGAATGCGCCCACAGA 61.701 61.111 4.18 0.00 35.83 3.41
128 129 3.499737 CCGAATGCGCCCACAGAC 61.500 66.667 4.18 0.00 35.83 3.51
129 130 3.853330 CGAATGCGCCCACAGACG 61.853 66.667 4.18 0.00 0.00 4.18
130 131 2.742372 GAATGCGCCCACAGACGT 60.742 61.111 4.18 0.00 0.00 4.34
131 132 1.447140 GAATGCGCCCACAGACGTA 60.447 57.895 4.18 0.00 0.00 3.57
132 133 0.810031 GAATGCGCCCACAGACGTAT 60.810 55.000 4.18 0.00 36.12 3.06
133 134 0.462375 AATGCGCCCACAGACGTATA 59.538 50.000 4.18 0.00 33.39 1.47
134 135 0.032130 ATGCGCCCACAGACGTATAG 59.968 55.000 4.18 0.00 32.75 1.31
135 136 1.299926 GCGCCCACAGACGTATAGG 60.300 63.158 0.00 0.00 0.00 2.57
136 137 1.362717 CGCCCACAGACGTATAGGG 59.637 63.158 13.92 13.92 42.55 3.53
137 138 1.746517 GCCCACAGACGTATAGGGG 59.253 63.158 18.33 15.62 39.96 4.79
138 139 0.757935 GCCCACAGACGTATAGGGGA 60.758 60.000 19.38 0.00 39.96 4.81
139 140 1.329256 CCCACAGACGTATAGGGGAG 58.671 60.000 11.83 0.00 37.80 4.30
140 141 1.411216 CCCACAGACGTATAGGGGAGT 60.411 57.143 11.83 0.00 37.80 3.85
141 142 1.955080 CCACAGACGTATAGGGGAGTC 59.045 57.143 0.00 0.00 0.00 3.36
142 143 1.955080 CACAGACGTATAGGGGAGTCC 59.045 57.143 0.00 0.00 34.41 3.85
143 144 1.236628 CAGACGTATAGGGGAGTCCG 58.763 60.000 2.26 0.00 41.52 4.79
144 145 0.110104 AGACGTATAGGGGAGTCCGG 59.890 60.000 2.26 0.00 41.52 5.14
145 146 1.522302 GACGTATAGGGGAGTCCGGC 61.522 65.000 2.26 0.00 41.52 6.13
146 147 1.228490 CGTATAGGGGAGTCCGGCT 60.228 63.158 2.26 0.00 41.52 5.52
147 148 1.524863 CGTATAGGGGAGTCCGGCTG 61.525 65.000 2.26 0.00 41.52 4.85
148 149 0.469518 GTATAGGGGAGTCCGGCTGT 60.470 60.000 2.26 0.00 41.52 4.40
149 150 1.151760 TATAGGGGAGTCCGGCTGTA 58.848 55.000 2.26 0.00 41.52 2.74
150 151 0.263765 ATAGGGGAGTCCGGCTGTAA 59.736 55.000 2.26 0.00 41.52 2.41
151 152 0.041535 TAGGGGAGTCCGGCTGTAAA 59.958 55.000 2.26 0.00 41.52 2.01
152 153 0.620700 AGGGGAGTCCGGCTGTAAAT 60.621 55.000 2.26 0.00 41.52 1.40
153 154 0.463833 GGGGAGTCCGGCTGTAAATG 60.464 60.000 2.26 0.00 0.00 2.32
154 155 1.095807 GGGAGTCCGGCTGTAAATGC 61.096 60.000 2.26 0.00 0.00 3.56
155 156 0.107654 GGAGTCCGGCTGTAAATGCT 60.108 55.000 0.00 0.00 0.00 3.79
156 157 1.291132 GAGTCCGGCTGTAAATGCTC 58.709 55.000 0.00 0.00 0.00 4.26
157 158 0.905357 AGTCCGGCTGTAAATGCTCT 59.095 50.000 0.00 0.00 0.00 4.09
158 159 2.100916 GAGTCCGGCTGTAAATGCTCTA 59.899 50.000 0.00 0.00 0.00 2.43
159 160 2.500098 AGTCCGGCTGTAAATGCTCTAA 59.500 45.455 0.00 0.00 0.00 2.10
160 161 3.134804 AGTCCGGCTGTAAATGCTCTAAT 59.865 43.478 0.00 0.00 0.00 1.73
161 162 3.495001 GTCCGGCTGTAAATGCTCTAATC 59.505 47.826 0.00 0.00 0.00 1.75
162 163 2.476619 CCGGCTGTAAATGCTCTAATCG 59.523 50.000 0.00 0.00 0.00 3.34
163 164 3.123804 CGGCTGTAAATGCTCTAATCGT 58.876 45.455 0.00 0.00 0.00 3.73
164 165 3.182572 CGGCTGTAAATGCTCTAATCGTC 59.817 47.826 0.00 0.00 0.00 4.20
165 166 3.495001 GGCTGTAAATGCTCTAATCGTCC 59.505 47.826 0.00 0.00 0.00 4.79
166 167 4.372656 GCTGTAAATGCTCTAATCGTCCT 58.627 43.478 0.00 0.00 0.00 3.85
167 168 4.446051 GCTGTAAATGCTCTAATCGTCCTC 59.554 45.833 0.00 0.00 0.00 3.71
168 169 4.607955 TGTAAATGCTCTAATCGTCCTCG 58.392 43.478 0.00 0.00 38.55 4.63
169 170 2.141535 AATGCTCTAATCGTCCTCGC 57.858 50.000 0.00 0.00 36.96 5.03
170 171 1.323412 ATGCTCTAATCGTCCTCGCT 58.677 50.000 0.00 0.00 36.96 4.93
171 172 0.382158 TGCTCTAATCGTCCTCGCTG 59.618 55.000 0.00 0.00 36.96 5.18
172 173 0.937231 GCTCTAATCGTCCTCGCTGC 60.937 60.000 0.00 0.00 36.96 5.25
173 174 0.318275 CTCTAATCGTCCTCGCTGCC 60.318 60.000 0.00 0.00 36.96 4.85
174 175 1.300233 CTAATCGTCCTCGCTGCCC 60.300 63.158 0.00 0.00 36.96 5.36
175 176 3.133767 TAATCGTCCTCGCTGCCCG 62.134 63.158 0.00 0.00 36.96 6.13
179 180 4.148825 GTCCTCGCTGCCCGACAT 62.149 66.667 0.00 0.00 41.89 3.06
180 181 3.390521 TCCTCGCTGCCCGACATT 61.391 61.111 0.00 0.00 41.89 2.71
181 182 3.197790 CCTCGCTGCCCGACATTG 61.198 66.667 0.00 0.00 41.89 2.82
182 183 2.434884 CTCGCTGCCCGACATTGT 60.435 61.111 0.00 0.00 41.89 2.71
183 184 2.741985 TCGCTGCCCGACATTGTG 60.742 61.111 0.00 0.00 41.89 3.33
184 185 3.049674 CGCTGCCCGACATTGTGT 61.050 61.111 0.00 0.00 40.02 3.72
185 186 1.739929 CGCTGCCCGACATTGTGTA 60.740 57.895 0.00 0.00 40.02 2.90
186 187 1.794222 GCTGCCCGACATTGTGTAC 59.206 57.895 0.00 0.00 0.00 2.90
187 188 1.644786 GCTGCCCGACATTGTGTACC 61.645 60.000 0.00 0.00 0.00 3.34
188 189 0.321210 CTGCCCGACATTGTGTACCA 60.321 55.000 0.00 0.00 0.00 3.25
189 190 0.321210 TGCCCGACATTGTGTACCAG 60.321 55.000 0.00 0.00 0.00 4.00
190 191 0.036765 GCCCGACATTGTGTACCAGA 60.037 55.000 0.00 0.00 0.00 3.86
191 192 2.007049 GCCCGACATTGTGTACCAGAG 61.007 57.143 0.00 0.00 0.00 3.35
192 193 1.275291 CCCGACATTGTGTACCAGAGT 59.725 52.381 0.00 0.00 0.00 3.24
193 194 2.607187 CCGACATTGTGTACCAGAGTC 58.393 52.381 0.00 0.39 0.00 3.36
194 195 2.231478 CCGACATTGTGTACCAGAGTCT 59.769 50.000 0.00 0.00 30.69 3.24
195 196 3.502920 CGACATTGTGTACCAGAGTCTC 58.497 50.000 0.00 0.00 30.69 3.36
196 197 3.057526 CGACATTGTGTACCAGAGTCTCA 60.058 47.826 1.94 0.00 30.69 3.27
197 198 4.380973 CGACATTGTGTACCAGAGTCTCAT 60.381 45.833 1.94 0.00 30.69 2.90
198 199 5.163652 CGACATTGTGTACCAGAGTCTCATA 60.164 44.000 1.94 0.00 30.69 2.15
199 200 6.605471 ACATTGTGTACCAGAGTCTCATAA 57.395 37.500 1.94 0.00 0.00 1.90
200 201 6.398918 ACATTGTGTACCAGAGTCTCATAAC 58.601 40.000 1.94 0.00 0.00 1.89
201 202 6.014584 ACATTGTGTACCAGAGTCTCATAACA 60.015 38.462 1.94 0.00 0.00 2.41
202 203 5.644977 TGTGTACCAGAGTCTCATAACAG 57.355 43.478 1.94 0.00 0.00 3.16
203 204 5.321927 TGTGTACCAGAGTCTCATAACAGA 58.678 41.667 1.94 0.00 0.00 3.41
204 205 5.183331 TGTGTACCAGAGTCTCATAACAGAC 59.817 44.000 1.94 0.00 42.91 3.51
205 206 5.183331 GTGTACCAGAGTCTCATAACAGACA 59.817 44.000 1.94 0.00 44.73 3.41
206 207 4.792521 ACCAGAGTCTCATAACAGACAC 57.207 45.455 1.94 0.00 44.73 3.67
207 208 4.152647 ACCAGAGTCTCATAACAGACACA 58.847 43.478 1.94 0.00 44.73 3.72
208 209 4.588951 ACCAGAGTCTCATAACAGACACAA 59.411 41.667 1.94 0.00 44.73 3.33
209 210 5.070446 ACCAGAGTCTCATAACAGACACAAA 59.930 40.000 1.94 0.00 44.73 2.83
210 211 5.636965 CCAGAGTCTCATAACAGACACAAAG 59.363 44.000 1.94 0.00 44.73 2.77
211 212 6.450545 CAGAGTCTCATAACAGACACAAAGA 58.549 40.000 1.94 0.00 44.73 2.52
212 213 7.095910 CAGAGTCTCATAACAGACACAAAGAT 58.904 38.462 1.94 0.00 44.73 2.40
213 214 7.275341 CAGAGTCTCATAACAGACACAAAGATC 59.725 40.741 1.94 0.00 44.73 2.75
214 215 7.178274 AGAGTCTCATAACAGACACAAAGATCT 59.822 37.037 1.94 0.00 44.73 2.75
215 216 8.354711 AGTCTCATAACAGACACAAAGATCTA 57.645 34.615 0.00 0.00 44.73 1.98
216 217 8.465999 AGTCTCATAACAGACACAAAGATCTAG 58.534 37.037 0.00 0.00 44.73 2.43
217 218 8.247562 GTCTCATAACAGACACAAAGATCTAGT 58.752 37.037 0.00 0.00 42.25 2.57
218 219 8.807118 TCTCATAACAGACACAAAGATCTAGTT 58.193 33.333 0.00 0.00 0.00 2.24
219 220 9.429359 CTCATAACAGACACAAAGATCTAGTTT 57.571 33.333 0.00 0.00 0.00 2.66
220 221 9.208022 TCATAACAGACACAAAGATCTAGTTTG 57.792 33.333 0.00 0.00 40.18 2.93
221 222 9.208022 CATAACAGACACAAAGATCTAGTTTGA 57.792 33.333 11.68 0.00 38.13 2.69
222 223 7.721286 AACAGACACAAAGATCTAGTTTGAG 57.279 36.000 11.68 6.99 38.13 3.02
223 224 5.698545 ACAGACACAAAGATCTAGTTTGAGC 59.301 40.000 11.68 2.50 38.13 4.26
224 225 5.121454 CAGACACAAAGATCTAGTTTGAGCC 59.879 44.000 11.68 0.00 38.13 4.70
225 226 4.973168 ACACAAAGATCTAGTTTGAGCCA 58.027 39.130 11.68 0.00 38.13 4.75
226 227 4.757149 ACACAAAGATCTAGTTTGAGCCAC 59.243 41.667 11.68 0.00 38.13 5.01
227 228 3.997021 ACAAAGATCTAGTTTGAGCCACG 59.003 43.478 11.68 0.00 38.13 4.94
228 229 2.301577 AGATCTAGTTTGAGCCACGC 57.698 50.000 0.00 0.00 0.00 5.34
229 230 1.827969 AGATCTAGTTTGAGCCACGCT 59.172 47.619 0.00 0.00 43.88 5.07
230 231 3.024547 AGATCTAGTTTGAGCCACGCTA 58.975 45.455 0.00 0.00 39.88 4.26
231 232 2.649331 TCTAGTTTGAGCCACGCTAC 57.351 50.000 0.00 0.00 39.88 3.58
232 233 1.135489 TCTAGTTTGAGCCACGCTACG 60.135 52.381 0.00 0.00 39.88 3.51
233 234 0.108992 TAGTTTGAGCCACGCTACGG 60.109 55.000 0.00 0.00 39.88 4.02
234 235 1.373748 GTTTGAGCCACGCTACGGA 60.374 57.895 0.00 0.00 39.88 4.69
235 236 0.947180 GTTTGAGCCACGCTACGGAA 60.947 55.000 0.00 0.00 39.88 4.30
236 237 0.669318 TTTGAGCCACGCTACGGAAG 60.669 55.000 0.00 0.00 39.88 3.46
237 238 2.202756 GAGCCACGCTACGGAAGG 60.203 66.667 0.00 0.00 39.88 3.46
238 239 3.718210 GAGCCACGCTACGGAAGGG 62.718 68.421 3.07 3.07 39.88 3.95
243 244 4.338327 CGCTACGGAAGGGTATGC 57.662 61.111 0.00 0.00 33.54 3.14
244 245 1.440060 CGCTACGGAAGGGTATGCA 59.560 57.895 0.00 0.00 33.54 3.96
245 246 0.179094 CGCTACGGAAGGGTATGCAA 60.179 55.000 0.00 0.00 33.54 4.08
246 247 1.741055 CGCTACGGAAGGGTATGCAAA 60.741 52.381 0.00 0.00 33.54 3.68
247 248 1.669265 GCTACGGAAGGGTATGCAAAC 59.331 52.381 0.00 0.00 0.00 2.93
248 249 2.937873 GCTACGGAAGGGTATGCAAACA 60.938 50.000 0.00 0.00 0.00 2.83
249 250 1.530323 ACGGAAGGGTATGCAAACAC 58.470 50.000 0.00 0.00 0.00 3.32
250 251 1.202830 ACGGAAGGGTATGCAAACACA 60.203 47.619 0.00 0.00 0.00 3.72
251 252 1.199097 CGGAAGGGTATGCAAACACAC 59.801 52.381 0.00 0.00 0.00 3.82
252 253 2.514803 GGAAGGGTATGCAAACACACT 58.485 47.619 0.00 0.00 0.00 3.55
253 254 3.681593 GGAAGGGTATGCAAACACACTA 58.318 45.455 2.06 0.00 0.00 2.74
254 255 4.076394 GGAAGGGTATGCAAACACACTAA 58.924 43.478 2.06 0.00 0.00 2.24
255 256 4.521256 GGAAGGGTATGCAAACACACTAAA 59.479 41.667 2.06 0.00 0.00 1.85
256 257 5.335661 GGAAGGGTATGCAAACACACTAAAG 60.336 44.000 2.06 0.00 0.00 1.85
257 258 4.725490 AGGGTATGCAAACACACTAAAGT 58.275 39.130 0.00 0.00 0.00 2.66
258 259 4.760204 AGGGTATGCAAACACACTAAAGTC 59.240 41.667 0.00 0.00 0.00 3.01
259 260 4.517453 GGGTATGCAAACACACTAAAGTCA 59.483 41.667 0.00 0.00 0.00 3.41
260 261 5.334879 GGGTATGCAAACACACTAAAGTCAG 60.335 44.000 0.00 0.00 0.00 3.51
261 262 5.238650 GGTATGCAAACACACTAAAGTCAGT 59.761 40.000 0.00 0.00 0.00 3.41
262 263 5.835113 ATGCAAACACACTAAAGTCAGTT 57.165 34.783 0.00 0.00 0.00 3.16
263 264 5.229921 TGCAAACACACTAAAGTCAGTTC 57.770 39.130 0.00 0.00 0.00 3.01
264 265 4.697828 TGCAAACACACTAAAGTCAGTTCA 59.302 37.500 0.00 0.00 0.00 3.18
265 266 5.182190 TGCAAACACACTAAAGTCAGTTCAA 59.818 36.000 0.00 0.00 0.00 2.69
266 267 5.739161 GCAAACACACTAAAGTCAGTTCAAG 59.261 40.000 0.00 0.00 0.00 3.02
267 268 6.403200 GCAAACACACTAAAGTCAGTTCAAGA 60.403 38.462 0.00 0.00 0.00 3.02
268 269 6.910536 AACACACTAAAGTCAGTTCAAGAG 57.089 37.500 0.00 0.00 0.00 2.85
269 270 6.222038 ACACACTAAAGTCAGTTCAAGAGA 57.778 37.500 0.00 0.00 0.00 3.10
270 271 6.640518 ACACACTAAAGTCAGTTCAAGAGAA 58.359 36.000 0.00 0.00 0.00 2.87
271 272 7.103641 ACACACTAAAGTCAGTTCAAGAGAAA 58.896 34.615 0.00 0.00 35.08 2.52
272 273 7.606456 ACACACTAAAGTCAGTTCAAGAGAAAA 59.394 33.333 0.00 0.00 35.08 2.29
273 274 8.450964 CACACTAAAGTCAGTTCAAGAGAAAAA 58.549 33.333 0.00 0.00 35.08 1.94
296 297 4.842531 TCTGAATGATTTGTGGCTAGGA 57.157 40.909 0.00 0.00 0.00 2.94
297 298 5.378230 TCTGAATGATTTGTGGCTAGGAT 57.622 39.130 0.00 0.00 0.00 3.24
298 299 5.759059 TCTGAATGATTTGTGGCTAGGATT 58.241 37.500 0.00 0.00 0.00 3.01
299 300 6.189859 TCTGAATGATTTGTGGCTAGGATTT 58.810 36.000 0.00 0.00 0.00 2.17
300 301 6.095860 TCTGAATGATTTGTGGCTAGGATTTG 59.904 38.462 0.00 0.00 0.00 2.32
301 302 5.716228 TGAATGATTTGTGGCTAGGATTTGT 59.284 36.000 0.00 0.00 0.00 2.83
302 303 6.211184 TGAATGATTTGTGGCTAGGATTTGTT 59.789 34.615 0.00 0.00 0.00 2.83
303 304 6.610075 ATGATTTGTGGCTAGGATTTGTTT 57.390 33.333 0.00 0.00 0.00 2.83
304 305 7.716799 ATGATTTGTGGCTAGGATTTGTTTA 57.283 32.000 0.00 0.00 0.00 2.01
305 306 6.919721 TGATTTGTGGCTAGGATTTGTTTAC 58.080 36.000 0.00 0.00 0.00 2.01
306 307 6.719370 TGATTTGTGGCTAGGATTTGTTTACT 59.281 34.615 0.00 0.00 0.00 2.24
307 308 6.969993 TTTGTGGCTAGGATTTGTTTACTT 57.030 33.333 0.00 0.00 0.00 2.24
308 309 5.957842 TGTGGCTAGGATTTGTTTACTTG 57.042 39.130 0.00 0.00 0.00 3.16
309 310 5.626142 TGTGGCTAGGATTTGTTTACTTGA 58.374 37.500 0.00 0.00 0.00 3.02
310 311 6.245408 TGTGGCTAGGATTTGTTTACTTGAT 58.755 36.000 0.00 0.00 0.00 2.57
311 312 6.374333 TGTGGCTAGGATTTGTTTACTTGATC 59.626 38.462 0.00 0.00 0.00 2.92
312 313 6.599638 GTGGCTAGGATTTGTTTACTTGATCT 59.400 38.462 0.00 0.00 0.00 2.75
313 314 7.121315 GTGGCTAGGATTTGTTTACTTGATCTT 59.879 37.037 0.00 0.00 0.00 2.40
314 315 7.669722 TGGCTAGGATTTGTTTACTTGATCTTT 59.330 33.333 0.00 0.00 0.00 2.52
315 316 8.523658 GGCTAGGATTTGTTTACTTGATCTTTT 58.476 33.333 0.00 0.00 0.00 2.27
316 317 9.914131 GCTAGGATTTGTTTACTTGATCTTTTT 57.086 29.630 0.00 0.00 0.00 1.94
335 336 4.554162 TTTTGTTTCGTTTTTGCGAGTG 57.446 36.364 0.00 0.00 42.10 3.51
336 337 3.473093 TTGTTTCGTTTTTGCGAGTGA 57.527 38.095 0.00 0.00 42.10 3.41
337 338 3.684103 TGTTTCGTTTTTGCGAGTGAT 57.316 38.095 0.00 0.00 42.10 3.06
338 339 4.022464 TGTTTCGTTTTTGCGAGTGATT 57.978 36.364 0.00 0.00 42.10 2.57
339 340 4.416620 TGTTTCGTTTTTGCGAGTGATTT 58.583 34.783 0.00 0.00 42.10 2.17
340 341 4.859798 TGTTTCGTTTTTGCGAGTGATTTT 59.140 33.333 0.00 0.00 42.10 1.82
341 342 5.346281 TGTTTCGTTTTTGCGAGTGATTTTT 59.654 32.000 0.00 0.00 42.10 1.94
415 416 7.132213 CGTTGATAATGCACCATAAACCTTAG 58.868 38.462 0.00 0.00 0.00 2.18
479 480 3.477530 AGAAGCTCGGCTACAAAACTTT 58.522 40.909 0.00 0.00 38.25 2.66
498 499 2.514458 TTTCAATCCTGCCCTCTTCC 57.486 50.000 0.00 0.00 0.00 3.46
511 512 1.415659 CCTCTTCCTCTTGCATCGGAT 59.584 52.381 0.00 0.00 0.00 4.18
551 554 1.209275 ATACATTGCGAGCGCGAGAC 61.209 55.000 15.92 0.00 45.51 3.36
564 567 1.224315 CGAGACCCATGATTGCCCA 59.776 57.895 0.00 0.00 0.00 5.36
569 572 0.413037 ACCCATGATTGCCCAAAGGA 59.587 50.000 0.00 0.00 33.47 3.36
607 610 7.095187 ACCGAGTCAAATCAAGAGAATAAACAC 60.095 37.037 0.00 0.00 0.00 3.32
608 611 7.095229 CCGAGTCAAATCAAGAGAATAAACACA 60.095 37.037 0.00 0.00 0.00 3.72
609 612 7.742089 CGAGTCAAATCAAGAGAATAAACACAC 59.258 37.037 0.00 0.00 0.00 3.82
610 613 8.450578 AGTCAAATCAAGAGAATAAACACACA 57.549 30.769 0.00 0.00 0.00 3.72
611 614 8.902806 AGTCAAATCAAGAGAATAAACACACAA 58.097 29.630 0.00 0.00 0.00 3.33
612 615 9.515020 GTCAAATCAAGAGAATAAACACACAAA 57.485 29.630 0.00 0.00 0.00 2.83
764 767 0.955178 TCAGCTCGCACTAGCCTATC 59.045 55.000 0.00 0.00 43.86 2.08
777 780 4.822896 ACTAGCCTATCTTTAGTCACCTCG 59.177 45.833 0.00 0.00 0.00 4.63
931 934 8.718102 ATGCATTAACGAGTCACTTAATTACT 57.282 30.769 0.00 0.00 0.00 2.24
963 966 6.237755 GCATATAAATACTCGATTGTACCCGC 60.238 42.308 0.00 0.00 0.00 6.13
965 968 0.313043 ATACTCGATTGTACCCGCCG 59.687 55.000 0.00 0.00 0.00 6.46
966 969 1.031571 TACTCGATTGTACCCGCCGT 61.032 55.000 0.00 0.00 0.00 5.68
967 970 1.588139 CTCGATTGTACCCGCCGTC 60.588 63.158 0.00 0.00 0.00 4.79
1003 1008 5.594317 ACAGAAGAAAGTTTAGCAACCATGT 59.406 36.000 0.00 0.00 32.70 3.21
1023 1028 4.000325 TGTCATACCATGTTGAAAGGACG 59.000 43.478 0.00 0.00 0.00 4.79
1141 1146 5.738118 TGACCGTACTGTTTTTGTTAAGG 57.262 39.130 0.00 0.00 0.00 2.69
1142 1147 5.184711 TGACCGTACTGTTTTTGTTAAGGT 58.815 37.500 0.00 0.00 0.00 3.50
1172 1177 9.434420 AAACCACATTGTAATAATCCATTGTTG 57.566 29.630 0.00 0.00 0.00 3.33
1278 1283 1.153349 GAGACCTTCCACCGATGCC 60.153 63.158 0.00 0.00 0.00 4.40
1654 1684 7.606456 ACCAAAATCTCACATCGTTTACATAGT 59.394 33.333 0.00 0.00 0.00 2.12
1714 1746 7.548075 GGCAATCAAATGAATGAAGAGTGAAAT 59.452 33.333 2.71 0.00 32.06 2.17
1766 1798 5.822519 TCAACATATGGTCAAGTAATCCAGC 59.177 40.000 7.80 0.00 34.62 4.85
2259 2295 0.568192 AGGCTAGCTAATCTGGGGGA 59.432 55.000 15.72 0.00 0.00 4.81
2262 2298 1.205893 GCTAGCTAATCTGGGGGATCG 59.794 57.143 7.70 0.00 32.76 3.69
2326 2366 1.404035 TCTCTACGTGCGTGCATGTAT 59.596 47.619 22.99 5.11 44.38 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.002246 TCGATTATGAAAGCCAATGTCGC 59.998 43.478 0.00 0.00 0.00 5.19
1 2 4.518217 GTCGATTATGAAAGCCAATGTCG 58.482 43.478 0.00 0.00 0.00 4.35
2 3 4.034048 ACGTCGATTATGAAAGCCAATGTC 59.966 41.667 0.00 0.00 0.00 3.06
3 4 3.938963 ACGTCGATTATGAAAGCCAATGT 59.061 39.130 0.00 0.00 0.00 2.71
4 5 4.274069 CACGTCGATTATGAAAGCCAATG 58.726 43.478 0.00 0.00 0.00 2.82
5 6 3.242739 GCACGTCGATTATGAAAGCCAAT 60.243 43.478 0.00 0.00 0.00 3.16
6 7 2.095213 GCACGTCGATTATGAAAGCCAA 59.905 45.455 0.00 0.00 0.00 4.52
7 8 1.663643 GCACGTCGATTATGAAAGCCA 59.336 47.619 0.00 0.00 0.00 4.75
8 9 1.663643 TGCACGTCGATTATGAAAGCC 59.336 47.619 0.00 0.00 0.00 4.35
9 10 3.283256 CATGCACGTCGATTATGAAAGC 58.717 45.455 0.00 0.00 0.00 3.51
10 11 3.555547 TCCATGCACGTCGATTATGAAAG 59.444 43.478 0.00 0.00 0.00 2.62
11 12 3.526534 TCCATGCACGTCGATTATGAAA 58.473 40.909 0.00 0.00 0.00 2.69
12 13 3.172229 TCCATGCACGTCGATTATGAA 57.828 42.857 0.00 0.00 0.00 2.57
13 14 2.880963 TCCATGCACGTCGATTATGA 57.119 45.000 0.00 0.00 0.00 2.15
14 15 4.024977 TCAAATCCATGCACGTCGATTATG 60.025 41.667 0.00 0.00 0.00 1.90
15 16 4.126437 TCAAATCCATGCACGTCGATTAT 58.874 39.130 0.00 0.00 0.00 1.28
16 17 3.526534 TCAAATCCATGCACGTCGATTA 58.473 40.909 0.00 0.00 0.00 1.75
17 18 2.352651 CTCAAATCCATGCACGTCGATT 59.647 45.455 0.00 0.00 0.00 3.34
18 19 1.935873 CTCAAATCCATGCACGTCGAT 59.064 47.619 0.00 0.00 0.00 3.59
19 20 1.067213 TCTCAAATCCATGCACGTCGA 60.067 47.619 0.00 0.00 0.00 4.20
20 21 1.325640 CTCTCAAATCCATGCACGTCG 59.674 52.381 0.00 0.00 0.00 5.12
21 22 2.349886 GACTCTCAAATCCATGCACGTC 59.650 50.000 0.00 0.00 0.00 4.34
22 23 2.350522 GACTCTCAAATCCATGCACGT 58.649 47.619 0.00 0.00 0.00 4.49
23 24 1.667724 GGACTCTCAAATCCATGCACG 59.332 52.381 0.00 0.00 34.87 5.34
24 25 1.667724 CGGACTCTCAAATCCATGCAC 59.332 52.381 0.00 0.00 34.35 4.57
25 26 1.407299 CCGGACTCTCAAATCCATGCA 60.407 52.381 0.00 0.00 34.35 3.96
26 27 1.303309 CCGGACTCTCAAATCCATGC 58.697 55.000 0.00 0.00 34.35 4.06
27 28 1.210478 ACCCGGACTCTCAAATCCATG 59.790 52.381 0.73 0.00 34.35 3.66
28 29 1.584724 ACCCGGACTCTCAAATCCAT 58.415 50.000 0.73 0.00 34.35 3.41
29 30 1.358152 AACCCGGACTCTCAAATCCA 58.642 50.000 0.73 0.00 34.35 3.41
30 31 2.084546 CAAACCCGGACTCTCAAATCC 58.915 52.381 0.73 0.00 0.00 3.01
31 32 3.003480 CTCAAACCCGGACTCTCAAATC 58.997 50.000 0.73 0.00 0.00 2.17
32 33 2.637872 TCTCAAACCCGGACTCTCAAAT 59.362 45.455 0.73 0.00 0.00 2.32
33 34 2.043992 TCTCAAACCCGGACTCTCAAA 58.956 47.619 0.73 0.00 0.00 2.69
34 35 1.712056 TCTCAAACCCGGACTCTCAA 58.288 50.000 0.73 0.00 0.00 3.02
35 36 1.938585 ATCTCAAACCCGGACTCTCA 58.061 50.000 0.73 0.00 0.00 3.27
36 37 3.385111 ACATATCTCAAACCCGGACTCTC 59.615 47.826 0.73 0.00 0.00 3.20
37 38 3.133003 CACATATCTCAAACCCGGACTCT 59.867 47.826 0.73 0.00 0.00 3.24
38 39 3.458189 CACATATCTCAAACCCGGACTC 58.542 50.000 0.73 0.00 0.00 3.36
39 40 2.170607 CCACATATCTCAAACCCGGACT 59.829 50.000 0.73 0.00 0.00 3.85
40 41 2.169769 TCCACATATCTCAAACCCGGAC 59.830 50.000 0.73 0.00 0.00 4.79
41 42 2.473070 TCCACATATCTCAAACCCGGA 58.527 47.619 0.73 0.00 0.00 5.14
42 43 3.141398 CATCCACATATCTCAAACCCGG 58.859 50.000 0.00 0.00 0.00 5.73
43 44 2.549754 GCATCCACATATCTCAAACCCG 59.450 50.000 0.00 0.00 0.00 5.28
44 45 2.887152 GGCATCCACATATCTCAAACCC 59.113 50.000 0.00 0.00 0.00 4.11
45 46 2.549754 CGGCATCCACATATCTCAAACC 59.450 50.000 0.00 0.00 0.00 3.27
46 47 2.549754 CCGGCATCCACATATCTCAAAC 59.450 50.000 0.00 0.00 0.00 2.93
47 48 2.437651 TCCGGCATCCACATATCTCAAA 59.562 45.455 0.00 0.00 0.00 2.69
48 49 2.046292 TCCGGCATCCACATATCTCAA 58.954 47.619 0.00 0.00 0.00 3.02
49 50 1.715785 TCCGGCATCCACATATCTCA 58.284 50.000 0.00 0.00 0.00 3.27
50 51 2.839486 TTCCGGCATCCACATATCTC 57.161 50.000 0.00 0.00 0.00 2.75
51 52 3.072915 TCATTTCCGGCATCCACATATCT 59.927 43.478 0.00 0.00 0.00 1.98
52 53 3.411446 TCATTTCCGGCATCCACATATC 58.589 45.455 0.00 0.00 0.00 1.63
53 54 3.507162 TCATTTCCGGCATCCACATAT 57.493 42.857 0.00 0.00 0.00 1.78
54 55 3.289407 TTCATTTCCGGCATCCACATA 57.711 42.857 0.00 0.00 0.00 2.29
55 56 2.142356 TTCATTTCCGGCATCCACAT 57.858 45.000 0.00 0.00 0.00 3.21
56 57 1.916506 TTTCATTTCCGGCATCCACA 58.083 45.000 0.00 0.00 0.00 4.17
57 58 4.278170 TCATATTTCATTTCCGGCATCCAC 59.722 41.667 0.00 0.00 0.00 4.02
58 59 4.468713 TCATATTTCATTTCCGGCATCCA 58.531 39.130 0.00 0.00 0.00 3.41
59 60 4.082571 CCTCATATTTCATTTCCGGCATCC 60.083 45.833 0.00 0.00 0.00 3.51
60 61 4.082571 CCCTCATATTTCATTTCCGGCATC 60.083 45.833 0.00 0.00 0.00 3.91
61 62 3.828451 CCCTCATATTTCATTTCCGGCAT 59.172 43.478 0.00 0.00 0.00 4.40
62 63 3.221771 CCCTCATATTTCATTTCCGGCA 58.778 45.455 0.00 0.00 0.00 5.69
63 64 2.029918 GCCCTCATATTTCATTTCCGGC 60.030 50.000 0.00 0.00 0.00 6.13
64 65 2.558359 GGCCCTCATATTTCATTTCCGG 59.442 50.000 0.00 0.00 0.00 5.14
65 66 2.558359 GGGCCCTCATATTTCATTTCCG 59.442 50.000 17.04 0.00 0.00 4.30
66 67 2.558359 CGGGCCCTCATATTTCATTTCC 59.442 50.000 22.43 0.00 0.00 3.13
67 68 3.222603 ACGGGCCCTCATATTTCATTTC 58.777 45.455 22.43 0.00 0.00 2.17
68 69 3.312736 ACGGGCCCTCATATTTCATTT 57.687 42.857 22.43 0.00 0.00 2.32
69 70 3.222603 GAACGGGCCCTCATATTTCATT 58.777 45.455 22.43 0.00 0.00 2.57
70 71 2.810400 CGAACGGGCCCTCATATTTCAT 60.810 50.000 22.43 0.00 0.00 2.57
71 72 1.474320 CGAACGGGCCCTCATATTTCA 60.474 52.381 22.43 0.00 0.00 2.69
72 73 1.226746 CGAACGGGCCCTCATATTTC 58.773 55.000 22.43 11.06 0.00 2.17
73 74 0.179029 CCGAACGGGCCCTCATATTT 60.179 55.000 22.43 2.60 0.00 1.40
74 75 1.052124 TCCGAACGGGCCCTCATATT 61.052 55.000 22.43 5.99 34.94 1.28
75 76 0.836400 ATCCGAACGGGCCCTCATAT 60.836 55.000 22.43 4.79 34.94 1.78
76 77 1.458777 ATCCGAACGGGCCCTCATA 60.459 57.895 22.43 2.33 34.94 2.15
77 78 2.768344 ATCCGAACGGGCCCTCAT 60.768 61.111 22.43 5.18 34.94 2.90
78 79 3.781307 CATCCGAACGGGCCCTCA 61.781 66.667 22.43 0.00 34.94 3.86
79 80 3.782443 ACATCCGAACGGGCCCTC 61.782 66.667 22.43 11.00 34.94 4.30
80 81 4.096003 CACATCCGAACGGGCCCT 62.096 66.667 22.43 0.00 34.94 5.19
81 82 4.404098 ACACATCCGAACGGGCCC 62.404 66.667 13.57 13.57 34.94 5.80
82 83 2.818274 GACACATCCGAACGGGCC 60.818 66.667 13.29 0.00 34.94 5.80
83 84 2.047655 TGACACATCCGAACGGGC 60.048 61.111 13.29 0.00 34.94 6.13
84 85 2.100631 GCTGACACATCCGAACGGG 61.101 63.158 13.29 0.91 35.59 5.28
85 86 0.740868 ATGCTGACACATCCGAACGG 60.741 55.000 6.94 6.94 0.00 4.44
86 87 0.371301 CATGCTGACACATCCGAACG 59.629 55.000 0.00 0.00 0.00 3.95
87 88 1.129251 CACATGCTGACACATCCGAAC 59.871 52.381 0.00 0.00 0.00 3.95
88 89 1.270785 ACACATGCTGACACATCCGAA 60.271 47.619 0.00 0.00 0.00 4.30
89 90 0.321346 ACACATGCTGACACATCCGA 59.679 50.000 0.00 0.00 0.00 4.55
90 91 0.445043 CACACATGCTGACACATCCG 59.555 55.000 0.00 0.00 0.00 4.18
91 92 1.466167 GACACACATGCTGACACATCC 59.534 52.381 0.00 0.00 0.00 3.51
92 93 1.466167 GGACACACATGCTGACACATC 59.534 52.381 0.00 0.00 0.00 3.06
93 94 1.527034 GGACACACATGCTGACACAT 58.473 50.000 0.00 0.00 0.00 3.21
94 95 0.879839 CGGACACACATGCTGACACA 60.880 55.000 0.00 0.00 0.00 3.72
95 96 0.599991 TCGGACACACATGCTGACAC 60.600 55.000 0.00 0.00 0.00 3.67
96 97 0.105778 TTCGGACACACATGCTGACA 59.894 50.000 0.00 0.00 0.00 3.58
97 98 1.129251 CATTCGGACACACATGCTGAC 59.871 52.381 0.00 0.00 0.00 3.51
98 99 1.441738 CATTCGGACACACATGCTGA 58.558 50.000 0.00 0.00 0.00 4.26
99 100 0.179181 GCATTCGGACACACATGCTG 60.179 55.000 4.72 0.00 39.20 4.41
100 101 1.638388 CGCATTCGGACACACATGCT 61.638 55.000 9.24 0.00 39.98 3.79
101 102 1.226101 CGCATTCGGACACACATGC 60.226 57.895 0.00 2.27 38.96 4.06
102 103 1.226101 GCGCATTCGGACACACATG 60.226 57.895 0.30 0.00 35.95 3.21
103 104 2.398554 GGCGCATTCGGACACACAT 61.399 57.895 10.83 0.00 35.95 3.21
104 105 3.047280 GGCGCATTCGGACACACA 61.047 61.111 10.83 0.00 35.95 3.72
105 106 3.799755 GGGCGCATTCGGACACAC 61.800 66.667 10.83 0.00 35.95 3.82
106 107 4.321966 TGGGCGCATTCGGACACA 62.322 61.111 10.83 0.00 35.95 3.72
107 108 3.799755 GTGGGCGCATTCGGACAC 61.800 66.667 10.83 2.39 35.95 3.67
108 109 4.321966 TGTGGGCGCATTCGGACA 62.322 61.111 10.83 0.00 35.95 4.02
109 110 3.499737 CTGTGGGCGCATTCGGAC 61.500 66.667 10.83 0.00 35.95 4.79
110 111 3.700970 TCTGTGGGCGCATTCGGA 61.701 61.111 10.83 6.04 35.95 4.55
111 112 3.499737 GTCTGTGGGCGCATTCGG 61.500 66.667 10.83 3.43 35.95 4.30
112 113 3.853330 CGTCTGTGGGCGCATTCG 61.853 66.667 10.83 6.14 39.07 3.34
113 114 0.810031 ATACGTCTGTGGGCGCATTC 60.810 55.000 10.83 0.00 0.00 2.67
114 115 0.462375 TATACGTCTGTGGGCGCATT 59.538 50.000 10.83 0.00 0.00 3.56
115 116 0.032130 CTATACGTCTGTGGGCGCAT 59.968 55.000 10.83 0.00 0.00 4.73
116 117 1.435925 CTATACGTCTGTGGGCGCA 59.564 57.895 10.83 0.00 0.00 6.09
117 118 1.299926 CCTATACGTCTGTGGGCGC 60.300 63.158 0.00 0.00 0.00 6.53
118 119 1.362717 CCCTATACGTCTGTGGGCG 59.637 63.158 0.00 0.00 0.00 6.13
119 120 0.757935 TCCCCTATACGTCTGTGGGC 60.758 60.000 0.00 0.00 36.66 5.36
120 121 1.329256 CTCCCCTATACGTCTGTGGG 58.671 60.000 0.00 0.00 37.68 4.61
121 122 1.955080 GACTCCCCTATACGTCTGTGG 59.045 57.143 0.00 0.00 0.00 4.17
122 123 1.955080 GGACTCCCCTATACGTCTGTG 59.045 57.143 0.00 0.00 0.00 3.66
123 124 1.476471 CGGACTCCCCTATACGTCTGT 60.476 57.143 0.00 0.00 0.00 3.41
124 125 1.236628 CGGACTCCCCTATACGTCTG 58.763 60.000 0.00 0.00 0.00 3.51
125 126 0.110104 CCGGACTCCCCTATACGTCT 59.890 60.000 0.00 0.00 0.00 4.18
126 127 1.522302 GCCGGACTCCCCTATACGTC 61.522 65.000 5.05 0.00 0.00 4.34
127 128 1.530183 GCCGGACTCCCCTATACGT 60.530 63.158 5.05 0.00 0.00 3.57
128 129 1.228490 AGCCGGACTCCCCTATACG 60.228 63.158 5.05 0.00 0.00 3.06
129 130 0.469518 ACAGCCGGACTCCCCTATAC 60.470 60.000 5.05 0.00 0.00 1.47
130 131 1.151760 TACAGCCGGACTCCCCTATA 58.848 55.000 5.05 0.00 0.00 1.31
131 132 0.263765 TTACAGCCGGACTCCCCTAT 59.736 55.000 5.05 0.00 0.00 2.57
132 133 0.041535 TTTACAGCCGGACTCCCCTA 59.958 55.000 5.05 0.00 0.00 3.53
133 134 0.620700 ATTTACAGCCGGACTCCCCT 60.621 55.000 5.05 0.00 0.00 4.79
134 135 0.463833 CATTTACAGCCGGACTCCCC 60.464 60.000 5.05 0.00 0.00 4.81
135 136 1.095807 GCATTTACAGCCGGACTCCC 61.096 60.000 5.05 0.00 0.00 4.30
136 137 0.107654 AGCATTTACAGCCGGACTCC 60.108 55.000 5.05 0.00 0.00 3.85
137 138 1.134670 AGAGCATTTACAGCCGGACTC 60.135 52.381 5.05 0.00 0.00 3.36
138 139 0.905357 AGAGCATTTACAGCCGGACT 59.095 50.000 5.05 0.00 0.00 3.85
139 140 2.596904 TAGAGCATTTACAGCCGGAC 57.403 50.000 5.05 0.00 0.00 4.79
140 141 3.728845 GATTAGAGCATTTACAGCCGGA 58.271 45.455 5.05 0.00 0.00 5.14
141 142 2.476619 CGATTAGAGCATTTACAGCCGG 59.523 50.000 0.00 0.00 0.00 6.13
142 143 3.123804 ACGATTAGAGCATTTACAGCCG 58.876 45.455 0.00 0.00 0.00 5.52
143 144 3.495001 GGACGATTAGAGCATTTACAGCC 59.505 47.826 0.00 0.00 0.00 4.85
144 145 4.372656 AGGACGATTAGAGCATTTACAGC 58.627 43.478 0.00 0.00 0.00 4.40
145 146 4.677378 CGAGGACGATTAGAGCATTTACAG 59.323 45.833 0.00 0.00 42.66 2.74
146 147 4.607955 CGAGGACGATTAGAGCATTTACA 58.392 43.478 0.00 0.00 42.66 2.41
147 148 3.425858 GCGAGGACGATTAGAGCATTTAC 59.574 47.826 0.00 0.00 42.66 2.01
148 149 3.318275 AGCGAGGACGATTAGAGCATTTA 59.682 43.478 0.00 0.00 42.66 1.40
149 150 2.101582 AGCGAGGACGATTAGAGCATTT 59.898 45.455 0.00 0.00 42.66 2.32
150 151 1.683917 AGCGAGGACGATTAGAGCATT 59.316 47.619 0.00 0.00 42.66 3.56
151 152 1.000827 CAGCGAGGACGATTAGAGCAT 60.001 52.381 0.00 0.00 42.66 3.79
152 153 0.382158 CAGCGAGGACGATTAGAGCA 59.618 55.000 0.00 0.00 42.66 4.26
153 154 0.937231 GCAGCGAGGACGATTAGAGC 60.937 60.000 0.00 0.00 42.66 4.09
154 155 0.318275 GGCAGCGAGGACGATTAGAG 60.318 60.000 0.00 0.00 42.66 2.43
155 156 1.734137 GGCAGCGAGGACGATTAGA 59.266 57.895 0.00 0.00 42.66 2.10
156 157 1.300233 GGGCAGCGAGGACGATTAG 60.300 63.158 0.00 0.00 42.66 1.73
157 158 2.812499 GGGCAGCGAGGACGATTA 59.188 61.111 0.00 0.00 42.66 1.75
158 159 4.514577 CGGGCAGCGAGGACGATT 62.515 66.667 0.00 0.00 42.66 3.34
162 163 3.665675 AATGTCGGGCAGCGAGGAC 62.666 63.158 0.00 2.96 0.00 3.85
163 164 3.390521 AATGTCGGGCAGCGAGGA 61.391 61.111 0.00 0.00 0.00 3.71
164 165 3.197790 CAATGTCGGGCAGCGAGG 61.198 66.667 0.00 0.00 0.00 4.63
165 166 2.434884 ACAATGTCGGGCAGCGAG 60.435 61.111 0.00 0.00 0.00 5.03
166 167 2.161078 TACACAATGTCGGGCAGCGA 62.161 55.000 0.00 0.00 0.00 4.93
167 168 1.739929 TACACAATGTCGGGCAGCG 60.740 57.895 0.00 0.00 0.00 5.18
168 169 1.644786 GGTACACAATGTCGGGCAGC 61.645 60.000 0.00 0.00 0.00 5.25
169 170 0.321210 TGGTACACAATGTCGGGCAG 60.321 55.000 0.00 0.00 0.00 4.85
170 171 0.321210 CTGGTACACAATGTCGGGCA 60.321 55.000 0.00 0.00 0.00 5.36
171 172 0.036765 TCTGGTACACAATGTCGGGC 60.037 55.000 0.00 0.00 0.00 6.13
172 173 1.275291 ACTCTGGTACACAATGTCGGG 59.725 52.381 0.00 0.00 0.00 5.14
173 174 2.231478 AGACTCTGGTACACAATGTCGG 59.769 50.000 0.00 0.00 36.84 4.79
174 175 3.057526 TGAGACTCTGGTACACAATGTCG 60.058 47.826 3.68 0.00 36.84 4.35
175 176 4.521130 TGAGACTCTGGTACACAATGTC 57.479 45.455 3.68 2.55 33.94 3.06
176 177 6.014584 TGTTATGAGACTCTGGTACACAATGT 60.015 38.462 3.68 0.00 0.00 2.71
177 178 6.398095 TGTTATGAGACTCTGGTACACAATG 58.602 40.000 3.68 0.00 0.00 2.82
178 179 6.437477 TCTGTTATGAGACTCTGGTACACAAT 59.563 38.462 3.68 0.00 0.00 2.71
179 180 5.773176 TCTGTTATGAGACTCTGGTACACAA 59.227 40.000 3.68 0.00 0.00 3.33
180 181 5.183331 GTCTGTTATGAGACTCTGGTACACA 59.817 44.000 3.68 0.00 39.52 3.72
181 182 5.183331 TGTCTGTTATGAGACTCTGGTACAC 59.817 44.000 3.68 0.00 42.58 2.90
182 183 5.183331 GTGTCTGTTATGAGACTCTGGTACA 59.817 44.000 3.68 2.70 42.58 2.90
183 184 5.183331 TGTGTCTGTTATGAGACTCTGGTAC 59.817 44.000 3.68 0.00 42.58 3.34
184 185 5.321927 TGTGTCTGTTATGAGACTCTGGTA 58.678 41.667 3.68 0.00 42.58 3.25
185 186 4.152647 TGTGTCTGTTATGAGACTCTGGT 58.847 43.478 3.68 0.00 42.58 4.00
186 187 4.790765 TGTGTCTGTTATGAGACTCTGG 57.209 45.455 3.68 0.00 42.58 3.86
187 188 6.450545 TCTTTGTGTCTGTTATGAGACTCTG 58.549 40.000 3.68 0.00 42.58 3.35
188 189 6.656632 TCTTTGTGTCTGTTATGAGACTCT 57.343 37.500 3.68 0.00 42.58 3.24
189 190 7.319646 AGATCTTTGTGTCTGTTATGAGACTC 58.680 38.462 0.00 0.00 42.58 3.36
190 191 7.238486 AGATCTTTGTGTCTGTTATGAGACT 57.762 36.000 0.00 0.00 42.58 3.24
191 192 8.247562 ACTAGATCTTTGTGTCTGTTATGAGAC 58.752 37.037 0.00 0.00 42.46 3.36
192 193 8.354711 ACTAGATCTTTGTGTCTGTTATGAGA 57.645 34.615 0.00 0.00 0.00 3.27
193 194 8.994429 AACTAGATCTTTGTGTCTGTTATGAG 57.006 34.615 0.00 0.00 0.00 2.90
194 195 9.208022 CAAACTAGATCTTTGTGTCTGTTATGA 57.792 33.333 0.00 0.00 0.00 2.15
195 196 9.208022 TCAAACTAGATCTTTGTGTCTGTTATG 57.792 33.333 0.00 0.00 31.63 1.90
196 197 9.429359 CTCAAACTAGATCTTTGTGTCTGTTAT 57.571 33.333 0.00 0.00 31.63 1.89
197 198 7.385205 GCTCAAACTAGATCTTTGTGTCTGTTA 59.615 37.037 0.00 0.00 31.63 2.41
198 199 6.203723 GCTCAAACTAGATCTTTGTGTCTGTT 59.796 38.462 0.00 0.00 31.63 3.16
199 200 5.698545 GCTCAAACTAGATCTTTGTGTCTGT 59.301 40.000 0.00 0.00 31.63 3.41
200 201 5.121454 GGCTCAAACTAGATCTTTGTGTCTG 59.879 44.000 0.00 0.81 31.63 3.51
201 202 5.221722 TGGCTCAAACTAGATCTTTGTGTCT 60.222 40.000 0.00 0.00 31.24 3.41
202 203 4.997395 TGGCTCAAACTAGATCTTTGTGTC 59.003 41.667 0.00 2.99 31.63 3.67
203 204 4.757149 GTGGCTCAAACTAGATCTTTGTGT 59.243 41.667 0.00 0.00 31.63 3.72
204 205 4.143030 CGTGGCTCAAACTAGATCTTTGTG 60.143 45.833 0.00 1.95 31.63 3.33
205 206 3.997021 CGTGGCTCAAACTAGATCTTTGT 59.003 43.478 0.00 0.00 31.63 2.83
206 207 3.181516 GCGTGGCTCAAACTAGATCTTTG 60.182 47.826 0.00 0.00 0.00 2.77
207 208 3.003480 GCGTGGCTCAAACTAGATCTTT 58.997 45.455 0.00 0.00 0.00 2.52
208 209 2.234908 AGCGTGGCTCAAACTAGATCTT 59.765 45.455 0.00 0.00 30.62 2.40
209 210 1.827969 AGCGTGGCTCAAACTAGATCT 59.172 47.619 0.00 0.00 30.62 2.75
210 211 2.301577 AGCGTGGCTCAAACTAGATC 57.698 50.000 0.00 0.00 30.62 2.75
211 212 2.479730 CGTAGCGTGGCTCAAACTAGAT 60.480 50.000 0.00 0.00 40.44 1.98
212 213 1.135489 CGTAGCGTGGCTCAAACTAGA 60.135 52.381 0.00 0.00 40.44 2.43
213 214 1.269166 CGTAGCGTGGCTCAAACTAG 58.731 55.000 0.00 0.00 40.44 2.57
214 215 0.108992 CCGTAGCGTGGCTCAAACTA 60.109 55.000 0.00 0.00 40.44 2.24
215 216 1.374252 CCGTAGCGTGGCTCAAACT 60.374 57.895 0.00 0.00 40.44 2.66
216 217 0.947180 TTCCGTAGCGTGGCTCAAAC 60.947 55.000 0.00 0.00 40.44 2.93
217 218 0.669318 CTTCCGTAGCGTGGCTCAAA 60.669 55.000 0.00 0.00 40.44 2.69
218 219 1.080093 CTTCCGTAGCGTGGCTCAA 60.080 57.895 0.00 0.00 40.44 3.02
219 220 2.571757 CTTCCGTAGCGTGGCTCA 59.428 61.111 0.00 0.00 40.44 4.26
220 221 2.202756 CCTTCCGTAGCGTGGCTC 60.203 66.667 0.00 0.00 40.44 4.70
221 222 3.771160 CCCTTCCGTAGCGTGGCT 61.771 66.667 0.00 0.00 43.41 4.75
222 223 2.024590 ATACCCTTCCGTAGCGTGGC 62.025 60.000 0.00 0.00 0.00 5.01
223 224 0.249322 CATACCCTTCCGTAGCGTGG 60.249 60.000 0.00 0.00 0.00 4.94
224 225 0.874607 GCATACCCTTCCGTAGCGTG 60.875 60.000 0.00 0.00 0.00 5.34
225 226 1.324740 TGCATACCCTTCCGTAGCGT 61.325 55.000 0.00 0.00 0.00 5.07
226 227 0.179094 TTGCATACCCTTCCGTAGCG 60.179 55.000 0.00 0.00 0.00 4.26
227 228 1.669265 GTTTGCATACCCTTCCGTAGC 59.331 52.381 0.00 0.00 0.00 3.58
228 229 2.676342 GTGTTTGCATACCCTTCCGTAG 59.324 50.000 4.77 0.00 0.00 3.51
229 230 2.038689 TGTGTTTGCATACCCTTCCGTA 59.961 45.455 4.77 0.00 0.00 4.02
230 231 1.202830 TGTGTTTGCATACCCTTCCGT 60.203 47.619 4.77 0.00 0.00 4.69
231 232 1.199097 GTGTGTTTGCATACCCTTCCG 59.801 52.381 4.77 0.00 31.61 4.30
232 233 2.514803 AGTGTGTTTGCATACCCTTCC 58.485 47.619 4.77 0.00 37.43 3.46
233 234 5.240844 ACTTTAGTGTGTTTGCATACCCTTC 59.759 40.000 4.77 0.00 37.43 3.46
234 235 5.137551 ACTTTAGTGTGTTTGCATACCCTT 58.862 37.500 4.77 0.00 37.43 3.95
235 236 4.725490 ACTTTAGTGTGTTTGCATACCCT 58.275 39.130 4.77 1.43 37.43 4.34
236 237 4.517453 TGACTTTAGTGTGTTTGCATACCC 59.483 41.667 4.77 0.00 37.43 3.69
237 238 5.238650 ACTGACTTTAGTGTGTTTGCATACC 59.761 40.000 4.77 0.00 37.43 2.73
238 239 6.300354 ACTGACTTTAGTGTGTTTGCATAC 57.700 37.500 0.00 0.00 37.05 2.39
239 240 6.540551 TGAACTGACTTTAGTGTGTTTGCATA 59.459 34.615 0.00 0.00 0.00 3.14
240 241 5.356751 TGAACTGACTTTAGTGTGTTTGCAT 59.643 36.000 0.00 0.00 0.00 3.96
241 242 4.697828 TGAACTGACTTTAGTGTGTTTGCA 59.302 37.500 0.00 0.00 0.00 4.08
242 243 5.229921 TGAACTGACTTTAGTGTGTTTGC 57.770 39.130 0.00 0.00 0.00 3.68
243 244 7.064609 TCTCTTGAACTGACTTTAGTGTGTTTG 59.935 37.037 0.00 0.00 0.00 2.93
244 245 7.103641 TCTCTTGAACTGACTTTAGTGTGTTT 58.896 34.615 0.00 0.00 0.00 2.83
245 246 6.640518 TCTCTTGAACTGACTTTAGTGTGTT 58.359 36.000 0.00 0.00 0.00 3.32
246 247 6.222038 TCTCTTGAACTGACTTTAGTGTGT 57.778 37.500 0.00 0.00 0.00 3.72
247 248 7.539712 TTTCTCTTGAACTGACTTTAGTGTG 57.460 36.000 0.00 0.00 31.02 3.82
248 249 8.561738 TTTTTCTCTTGAACTGACTTTAGTGT 57.438 30.769 0.00 0.00 31.02 3.55
274 275 5.378230 TCCTAGCCACAAATCATTCAGAT 57.622 39.130 0.00 0.00 39.09 2.90
275 276 4.842531 TCCTAGCCACAAATCATTCAGA 57.157 40.909 0.00 0.00 0.00 3.27
276 277 6.127535 ACAAATCCTAGCCACAAATCATTCAG 60.128 38.462 0.00 0.00 0.00 3.02
277 278 5.716228 ACAAATCCTAGCCACAAATCATTCA 59.284 36.000 0.00 0.00 0.00 2.57
278 279 6.212888 ACAAATCCTAGCCACAAATCATTC 57.787 37.500 0.00 0.00 0.00 2.67
279 280 6.610075 AACAAATCCTAGCCACAAATCATT 57.390 33.333 0.00 0.00 0.00 2.57
280 281 6.610075 AAACAAATCCTAGCCACAAATCAT 57.390 33.333 0.00 0.00 0.00 2.45
281 282 6.719370 AGTAAACAAATCCTAGCCACAAATCA 59.281 34.615 0.00 0.00 0.00 2.57
282 283 7.158099 AGTAAACAAATCCTAGCCACAAATC 57.842 36.000 0.00 0.00 0.00 2.17
283 284 7.232534 TCAAGTAAACAAATCCTAGCCACAAAT 59.767 33.333 0.00 0.00 0.00 2.32
284 285 6.547880 TCAAGTAAACAAATCCTAGCCACAAA 59.452 34.615 0.00 0.00 0.00 2.83
285 286 6.065374 TCAAGTAAACAAATCCTAGCCACAA 58.935 36.000 0.00 0.00 0.00 3.33
286 287 5.626142 TCAAGTAAACAAATCCTAGCCACA 58.374 37.500 0.00 0.00 0.00 4.17
287 288 6.599638 AGATCAAGTAAACAAATCCTAGCCAC 59.400 38.462 0.00 0.00 0.00 5.01
288 289 6.721318 AGATCAAGTAAACAAATCCTAGCCA 58.279 36.000 0.00 0.00 0.00 4.75
289 290 7.631717 AAGATCAAGTAAACAAATCCTAGCC 57.368 36.000 0.00 0.00 0.00 3.93
290 291 9.914131 AAAAAGATCAAGTAAACAAATCCTAGC 57.086 29.630 0.00 0.00 0.00 3.42
313 314 4.680110 TCACTCGCAAAAACGAAACAAAAA 59.320 33.333 0.00 0.00 42.39 1.94
314 315 4.227538 TCACTCGCAAAAACGAAACAAAA 58.772 34.783 0.00 0.00 42.39 2.44
315 316 3.822996 TCACTCGCAAAAACGAAACAAA 58.177 36.364 0.00 0.00 42.39 2.83
316 317 3.473093 TCACTCGCAAAAACGAAACAA 57.527 38.095 0.00 0.00 42.39 2.83
317 318 3.684103 ATCACTCGCAAAAACGAAACA 57.316 38.095 0.00 0.00 42.39 2.83
318 319 5.369947 AAAATCACTCGCAAAAACGAAAC 57.630 34.783 0.00 0.00 42.39 2.78
479 480 1.995542 AGGAAGAGGGCAGGATTGAAA 59.004 47.619 0.00 0.00 0.00 2.69
511 512 8.694581 TGTATCATCATGGATTTGAAGCATAA 57.305 30.769 0.00 0.00 0.00 1.90
551 554 1.797320 ATCCTTTGGGCAATCATGGG 58.203 50.000 0.00 0.00 0.00 4.00
615 618 9.753674 TGTCCAGGATCTATTTGTTTATTCTTT 57.246 29.630 0.00 0.00 0.00 2.52
616 619 9.927081 ATGTCCAGGATCTATTTGTTTATTCTT 57.073 29.630 0.00 0.00 0.00 2.52
777 780 8.617290 ATGGTGTATTAAAATTACCGAGGATC 57.383 34.615 0.00 0.00 34.16 3.36
950 953 1.996786 GAGACGGCGGGTACAATCGA 61.997 60.000 13.24 0.00 0.00 3.59
963 966 1.068588 TCTGTTGTGTGGAAGAGACGG 59.931 52.381 0.00 0.00 0.00 4.79
965 968 4.060038 TCTTCTGTTGTGTGGAAGAGAC 57.940 45.455 0.00 0.00 39.99 3.36
966 969 4.753516 TTCTTCTGTTGTGTGGAAGAGA 57.246 40.909 0.00 0.00 43.78 3.10
967 970 4.878397 ACTTTCTTCTGTTGTGTGGAAGAG 59.122 41.667 0.00 0.00 43.78 2.85
1003 1008 4.000325 CACGTCCTTTCAACATGGTATGA 59.000 43.478 0.00 0.00 0.00 2.15
1023 1028 2.359230 GTGACAGGGGAGCTGCAC 60.359 66.667 7.79 2.32 0.00 4.57
1120 1125 5.065090 ACACCTTAACAAAAACAGTACGGTC 59.935 40.000 0.00 0.00 0.00 4.79
1164 1169 0.319986 TGCATGCACAGCAACAATGG 60.320 50.000 18.46 0.00 43.62 3.16
1278 1283 2.099098 GGCATCTTGGGGAACGTAAATG 59.901 50.000 0.00 0.00 0.00 2.32
1526 1537 8.103305 AGAAAACATCTGCTTACAAGATCCTAA 58.897 33.333 0.00 0.00 36.88 2.69
1607 1623 8.458573 TTGGTTGTTCTACTGTATCACATTTT 57.541 30.769 1.37 0.00 0.00 1.82
1611 1627 7.936847 AGATTTTGGTTGTTCTACTGTATCACA 59.063 33.333 0.00 0.00 0.00 3.58
1654 1684 7.191551 CGTCGTGAATTGACCTCTAACTTATA 58.808 38.462 0.00 0.00 32.68 0.98
1666 1697 4.143179 CCTTTCTTACCGTCGTGAATTGAC 60.143 45.833 0.00 0.00 0.00 3.18
1731 1763 7.901283 TGACCATATGTTGATTGATCCATTT 57.099 32.000 1.24 0.00 0.00 2.32
1766 1798 7.209475 ACATGTACCTTTGATTTGGTTTGAAG 58.791 34.615 0.00 0.00 37.74 3.02
2219 2255 1.336609 GCTAACCCGGGCTATAAGACG 60.337 57.143 24.08 0.10 0.00 4.18
2254 2290 0.981277 TCTTCAACCTCCGATCCCCC 60.981 60.000 0.00 0.00 0.00 5.40
2259 2295 3.307059 CCAACTCTTCTTCAACCTCCGAT 60.307 47.826 0.00 0.00 0.00 4.18
2262 2298 3.142174 CACCAACTCTTCTTCAACCTCC 58.858 50.000 0.00 0.00 0.00 4.30
2326 2366 1.146041 GCCGCCCACTCATATCACA 59.854 57.895 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.