Multiple sequence alignment - TraesCS7D01G225100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G225100 chr7D 100.000 6209 0 0 1 6209 185141816 185135608 0.000000e+00 11466.0
1 TraesCS7D01G225100 chr7D 92.737 1363 92 6 2354 3711 91393588 91392228 0.000000e+00 1962.0
2 TraesCS7D01G225100 chr7D 85.290 1448 140 39 3902 5295 91392211 91390783 0.000000e+00 1426.0
3 TraesCS7D01G225100 chr7D 80.751 1039 123 39 902 1904 91395409 91394412 0.000000e+00 739.0
4 TraesCS7D01G225100 chr7D 87.080 387 30 8 5763 6138 91390565 91390188 2.680000e-113 420.0
5 TraesCS7D01G225100 chr7D 88.235 170 16 2 5445 5613 91390725 91390559 3.800000e-47 200.0
6 TraesCS7D01G225100 chr7D 75.794 252 29 19 2112 2334 91394196 91393948 1.420000e-16 99.0
7 TraesCS7D01G225100 chr7B 96.977 3738 95 11 2241 5967 327276116 327272386 0.000000e+00 6261.0
8 TraesCS7D01G225100 chr7B 94.329 1393 58 3 853 2236 327277534 327276154 0.000000e+00 2115.0
9 TraesCS7D01G225100 chr7B 93.052 1281 81 6 2461 3737 43881783 43880507 0.000000e+00 1866.0
10 TraesCS7D01G225100 chr7B 81.571 1031 124 33 902 1881 43883259 43882244 0.000000e+00 791.0
11 TraesCS7D01G225100 chr7B 86.555 714 56 18 3906 4582 43880510 43879800 0.000000e+00 750.0
12 TraesCS7D01G225100 chr7B 85.904 603 58 15 4704 5295 43879807 43879221 8.840000e-173 617.0
13 TraesCS7D01G225100 chr7B 93.993 283 11 4 5932 6209 327272384 327272103 2.070000e-114 424.0
14 TraesCS7D01G225100 chr7B 86.024 415 33 14 5738 6138 43879032 43878629 7.440000e-114 422.0
15 TraesCS7D01G225100 chr7B 90.533 169 11 2 5445 5613 43879163 43879000 1.050000e-52 219.0
16 TraesCS7D01G225100 chr7B 90.551 127 10 1 5293 5419 171992295 171992419 3.850000e-37 167.0
17 TraesCS7D01G225100 chr7B 94.624 93 5 0 2256 2348 43881917 43881825 1.800000e-30 145.0
18 TraesCS7D01G225100 chr7B 85.345 116 9 6 509 624 327279184 327279077 5.090000e-21 113.0
19 TraesCS7D01G225100 chr7A 95.200 3958 124 27 2241 6157 192671009 192667077 0.000000e+00 6196.0
20 TraesCS7D01G225100 chr7A 93.401 1288 79 5 2461 3744 93074083 93075368 0.000000e+00 1903.0
21 TraesCS7D01G225100 chr7A 85.355 1509 150 35 3823 5279 93075420 93076909 0.000000e+00 1496.0
22 TraesCS7D01G225100 chr7A 94.379 854 40 5 852 1698 192672812 192671960 0.000000e+00 1304.0
23 TraesCS7D01G225100 chr7A 91.953 758 56 3 1082 1836 192818404 192817649 0.000000e+00 1057.0
24 TraesCS7D01G225100 chr7A 95.218 481 23 0 1696 2176 192671857 192671377 0.000000e+00 761.0
25 TraesCS7D01G225100 chr7A 81.923 957 104 38 979 1887 93072692 93073627 0.000000e+00 745.0
26 TraesCS7D01G225100 chr7A 82.642 386 29 15 5763 6138 93077128 93077485 2.170000e-79 307.0
27 TraesCS7D01G225100 chr7A 88.750 240 22 2 852 1086 192830848 192830609 7.880000e-74 289.0
28 TraesCS7D01G225100 chr7A 88.199 161 15 2 5462 5621 93076986 93077143 8.220000e-44 189.0
29 TraesCS7D01G225100 chr7A 90.351 114 11 0 479 592 192831306 192831193 3.880000e-32 150.0
30 TraesCS7D01G225100 chr7A 88.889 108 11 1 2241 2348 93073939 93074045 1.400000e-26 132.0
31 TraesCS7D01G225100 chr7A 100.000 70 0 0 2167 2236 192671116 192671047 5.050000e-26 130.0
32 TraesCS7D01G225100 chr7A 96.000 50 1 1 6160 6209 192667045 192666997 5.160000e-11 80.5
33 TraesCS7D01G225100 chr4A 91.916 668 47 6 3017 3682 439068900 439068238 0.000000e+00 928.0
34 TraesCS7D01G225100 chr4A 92.308 182 14 0 3946 4127 439068241 439068060 6.170000e-65 259.0
35 TraesCS7D01G225100 chr4A 89.017 173 16 2 4201 4372 439068064 439067894 1.750000e-50 211.0
36 TraesCS7D01G225100 chr4A 92.188 128 9 1 5293 5420 381220473 381220599 4.950000e-41 180.0
37 TraesCS7D01G225100 chr4D 81.399 672 84 22 5493 6137 189583325 189583982 1.540000e-140 510.0
38 TraesCS7D01G225100 chr2B 93.130 131 9 0 5293 5423 458623620 458623490 6.350000e-45 193.0
39 TraesCS7D01G225100 chr2B 85.315 143 18 3 5292 5434 242020795 242020934 1.800000e-30 145.0
40 TraesCS7D01G225100 chrUn 90.625 128 11 1 5293 5420 52974728 52974602 1.070000e-37 169.0
41 TraesCS7D01G225100 chr6B 88.028 142 16 1 5278 5419 146149454 146149594 3.850000e-37 167.0
42 TraesCS7D01G225100 chr6B 88.636 132 14 1 5292 5423 479843470 479843600 6.440000e-35 159.0
43 TraesCS7D01G225100 chr2A 89.313 131 14 0 5293 5423 524144476 524144346 1.380000e-36 165.0
44 TraesCS7D01G225100 chr2A 89.855 69 4 1 3752 3820 196516145 196516080 1.110000e-12 86.1
45 TraesCS7D01G225100 chr2A 88.571 70 2 6 3757 3825 523862791 523862855 5.160000e-11 80.5
46 TraesCS7D01G225100 chr2D 89.313 131 9 5 5314 5442 23736037 23736164 6.440000e-35 159.0
47 TraesCS7D01G225100 chr5D 92.754 69 2 2 3756 3821 41139968 41140036 5.120000e-16 97.1
48 TraesCS7D01G225100 chr5D 85.556 90 5 8 3750 3837 458870273 458870356 3.080000e-13 87.9
49 TraesCS7D01G225100 chr3A 92.647 68 2 1 3756 3820 611169871 611169804 1.840000e-15 95.3
50 TraesCS7D01G225100 chr3A 97.297 37 1 0 6159 6195 467093859 467093823 5.200000e-06 63.9
51 TraesCS7D01G225100 chr1B 89.189 74 7 1 3755 3828 237010407 237010335 2.380000e-14 91.6
52 TraesCS7D01G225100 chr1B 91.304 46 4 0 6163 6208 92881277 92881322 5.200000e-06 63.9
53 TraesCS7D01G225100 chr5A 85.882 85 5 7 3755 3837 577931141 577931220 3.990000e-12 84.2
54 TraesCS7D01G225100 chr1A 96.078 51 2 0 6159 6209 238085256 238085306 3.990000e-12 84.2
55 TraesCS7D01G225100 chr1A 90.476 42 4 0 6167 6208 283860361 283860320 8.690000e-04 56.5
56 TraesCS7D01G225100 chr6A 91.304 46 4 0 6163 6208 64502469 64502514 5.200000e-06 63.9
57 TraesCS7D01G225100 chr6D 97.059 34 1 0 6166 6199 357271682 357271649 2.420000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G225100 chr7D 185135608 185141816 6208 True 11466.000000 11466 100.000000 1 6209 1 chr7D.!!$R1 6208
1 TraesCS7D01G225100 chr7D 91390188 91395409 5221 True 807.666667 1962 84.981167 902 6138 6 chr7D.!!$R2 5236
2 TraesCS7D01G225100 chr7B 327272103 327279184 7081 True 2228.250000 6261 92.661000 509 6209 4 chr7B.!!$R2 5700
3 TraesCS7D01G225100 chr7B 43878629 43883259 4630 True 687.142857 1866 88.323286 902 6138 7 chr7B.!!$R1 5236
4 TraesCS7D01G225100 chr7A 192666997 192672812 5815 True 1694.300000 6196 96.159400 852 6209 5 chr7A.!!$R2 5357
5 TraesCS7D01G225100 chr7A 192817649 192818404 755 True 1057.000000 1057 91.953000 1082 1836 1 chr7A.!!$R1 754
6 TraesCS7D01G225100 chr7A 93072692 93077485 4793 False 795.333333 1903 86.734833 979 6138 6 chr7A.!!$F1 5159
7 TraesCS7D01G225100 chr7A 192830609 192831306 697 True 219.500000 289 89.550500 479 1086 2 chr7A.!!$R3 607
8 TraesCS7D01G225100 chr4A 439067894 439068900 1006 True 466.000000 928 91.080333 3017 4372 3 chr4A.!!$R1 1355
9 TraesCS7D01G225100 chr4D 189583325 189583982 657 False 510.000000 510 81.399000 5493 6137 1 chr4D.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 377 0.036388 ACTTACCATGGTGCTGGTCG 60.036 55.000 28.17 9.52 46.79 4.79 F
471 472 0.041090 GGGCAGAAAAAGATGGGGGA 59.959 55.000 0.00 0.00 0.00 4.81 F
715 989 0.107800 CATCTGACAGTGAGCCCCAG 60.108 60.000 1.59 0.00 0.00 4.45 F
1960 3497 0.251916 TACGGTAGGCTGCAATTGCT 59.748 50.000 29.37 13.14 42.66 3.91 F
2101 3680 1.783140 CGTAGCGTCGGCCTAATTAAC 59.217 52.381 0.00 0.00 41.24 2.01 F
3876 6164 2.370849 TGGGTAGAAGTTTGGGTGAGTC 59.629 50.000 0.00 0.00 0.00 3.36 F
4859 7229 2.102588 ACGTGAAGTACTGAAGCTGGTT 59.897 45.455 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1224 2575 2.011741 ATAACCGATCCTGCGTCGCA 62.012 55.000 20.44 20.44 37.75 5.10 R
2105 3684 2.191128 ATGCTTCTTCTTTCGCCACT 57.809 45.000 0.00 0.00 0.00 4.00 R
2284 4173 2.818751 TGAACCACCAACCAAACTCT 57.181 45.000 0.00 0.00 0.00 3.24 R
3615 5849 2.945080 ATCATGGTCATTCCGCAGAT 57.055 45.000 0.00 0.00 39.52 2.90 R
3923 6218 8.023021 ACCTACAATAGCATTGTGATAAGAGA 57.977 34.615 18.73 2.55 34.11 3.10 R
4981 7351 0.524862 GCCAAGGACTGACATTGCAG 59.475 55.000 0.00 6.56 38.70 4.41 R
6150 8637 5.171147 ACTTATTCGGACACAGATACTCG 57.829 43.478 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.659172 TGGTTGCCTCCGCTTGGG 62.659 66.667 0.00 0.00 35.36 4.12
23 24 4.785453 CCTCCGCTTGGGCCACTC 62.785 72.222 5.23 0.00 34.94 3.51
24 25 4.020617 CTCCGCTTGGGCCACTCA 62.021 66.667 5.23 0.00 34.94 3.41
25 26 3.551496 CTCCGCTTGGGCCACTCAA 62.551 63.158 5.23 0.00 34.94 3.02
26 27 3.058160 CCGCTTGGGCCACTCAAG 61.058 66.667 5.23 14.06 43.10 3.02
27 28 3.058160 CGCTTGGGCCACTCAAGG 61.058 66.667 18.39 7.87 41.21 3.61
28 29 2.677875 GCTTGGGCCACTCAAGGG 60.678 66.667 18.39 0.10 41.21 3.95
29 30 3.170362 CTTGGGCCACTCAAGGGA 58.830 61.111 5.23 0.00 38.26 4.20
30 31 1.001641 CTTGGGCCACTCAAGGGAG 60.002 63.158 5.23 0.00 46.96 4.30
31 32 3.210012 TTGGGCCACTCAAGGGAGC 62.210 63.158 5.23 0.00 45.42 4.70
32 33 4.785453 GGGCCACTCAAGGGAGCG 62.785 72.222 4.39 0.00 45.42 5.03
33 34 4.785453 GGCCACTCAAGGGAGCGG 62.785 72.222 0.00 0.00 45.42 5.52
35 36 4.785453 CCACTCAAGGGAGCGGCC 62.785 72.222 0.00 0.00 45.42 6.13
44 45 2.032681 GGAGCGGCCCCATATGAC 59.967 66.667 3.65 0.00 0.00 3.06
45 46 2.032681 GAGCGGCCCCATATGACC 59.967 66.667 3.65 1.82 0.00 4.02
46 47 3.553095 GAGCGGCCCCATATGACCC 62.553 68.421 3.65 0.36 0.00 4.46
47 48 4.660938 GCGGCCCCATATGACCCC 62.661 72.222 3.65 0.00 0.00 4.95
48 49 2.854032 CGGCCCCATATGACCCCT 60.854 66.667 3.65 0.00 0.00 4.79
49 50 2.895424 CGGCCCCATATGACCCCTC 61.895 68.421 3.65 0.00 0.00 4.30
50 51 2.539081 GGCCCCATATGACCCCTCC 61.539 68.421 3.65 0.00 0.00 4.30
51 52 1.774217 GCCCCATATGACCCCTCCA 60.774 63.158 3.65 0.00 0.00 3.86
52 53 1.360393 GCCCCATATGACCCCTCCAA 61.360 60.000 3.65 0.00 0.00 3.53
53 54 1.231018 CCCCATATGACCCCTCCAAA 58.769 55.000 3.65 0.00 0.00 3.28
54 55 1.788915 CCCCATATGACCCCTCCAAAT 59.211 52.381 3.65 0.00 0.00 2.32
55 56 2.993146 CCCCATATGACCCCTCCAAATA 59.007 50.000 3.65 0.00 0.00 1.40
56 57 3.597868 CCCCATATGACCCCTCCAAATAT 59.402 47.826 3.65 0.00 0.00 1.28
57 58 4.045846 CCCCATATGACCCCTCCAAATATT 59.954 45.833 3.65 0.00 0.00 1.28
58 59 5.461018 CCCCATATGACCCCTCCAAATATTT 60.461 44.000 3.65 0.00 0.00 1.40
59 60 5.716703 CCCATATGACCCCTCCAAATATTTC 59.283 44.000 3.65 0.00 0.00 2.17
60 61 5.415701 CCATATGACCCCTCCAAATATTTCG 59.584 44.000 3.65 0.00 0.00 3.46
61 62 3.290948 TGACCCCTCCAAATATTTCGG 57.709 47.619 0.00 4.26 0.00 4.30
62 63 2.847449 TGACCCCTCCAAATATTTCGGA 59.153 45.455 14.66 14.66 0.00 4.55
63 64 3.267291 TGACCCCTCCAAATATTTCGGAA 59.733 43.478 15.65 0.00 0.00 4.30
64 65 3.628008 ACCCCTCCAAATATTTCGGAAC 58.372 45.455 15.65 0.00 0.00 3.62
65 66 2.956333 CCCCTCCAAATATTTCGGAACC 59.044 50.000 15.65 0.00 0.00 3.62
66 67 3.372675 CCCCTCCAAATATTTCGGAACCT 60.373 47.826 15.65 0.00 0.00 3.50
67 68 4.278310 CCCTCCAAATATTTCGGAACCTT 58.722 43.478 15.65 0.00 0.00 3.50
68 69 4.338400 CCCTCCAAATATTTCGGAACCTTC 59.662 45.833 15.65 0.00 0.00 3.46
69 70 5.193679 CCTCCAAATATTTCGGAACCTTCT 58.806 41.667 15.65 0.00 0.00 2.85
70 71 5.066505 CCTCCAAATATTTCGGAACCTTCTG 59.933 44.000 15.65 6.75 34.85 3.02
71 72 4.947388 TCCAAATATTTCGGAACCTTCTGG 59.053 41.667 13.64 3.41 39.83 3.86
88 89 7.948357 ACCTTCTGGTACCTTTGAAAAATTAC 58.052 34.615 14.36 0.00 46.43 1.89
89 90 7.562088 ACCTTCTGGTACCTTTGAAAAATTACA 59.438 33.333 14.36 0.00 46.43 2.41
90 91 8.417884 CCTTCTGGTACCTTTGAAAAATTACAA 58.582 33.333 14.36 0.00 0.00 2.41
91 92 9.463443 CTTCTGGTACCTTTGAAAAATTACAAG 57.537 33.333 14.36 0.00 0.00 3.16
92 93 8.754991 TCTGGTACCTTTGAAAAATTACAAGA 57.245 30.769 14.36 0.00 0.00 3.02
93 94 8.626526 TCTGGTACCTTTGAAAAATTACAAGAC 58.373 33.333 14.36 0.00 0.00 3.01
94 95 7.419204 TGGTACCTTTGAAAAATTACAAGACG 58.581 34.615 14.36 0.00 0.00 4.18
95 96 6.361481 GGTACCTTTGAAAAATTACAAGACGC 59.639 38.462 4.06 0.00 0.00 5.19
96 97 6.144078 ACCTTTGAAAAATTACAAGACGCT 57.856 33.333 0.00 0.00 0.00 5.07
97 98 6.206498 ACCTTTGAAAAATTACAAGACGCTC 58.794 36.000 0.00 0.00 0.00 5.03
98 99 5.629435 CCTTTGAAAAATTACAAGACGCTCC 59.371 40.000 0.00 0.00 0.00 4.70
99 100 4.759516 TGAAAAATTACAAGACGCTCCC 57.240 40.909 0.00 0.00 0.00 4.30
100 101 3.187637 TGAAAAATTACAAGACGCTCCCG 59.812 43.478 0.00 0.00 41.14 5.14
110 111 2.252260 CGCTCCCGTGCACTTTTG 59.748 61.111 16.19 3.94 0.00 2.44
111 112 2.644992 GCTCCCGTGCACTTTTGG 59.355 61.111 16.19 8.44 0.00 3.28
112 113 2.919494 GCTCCCGTGCACTTTTGGG 61.919 63.158 18.66 18.66 43.36 4.12
114 115 1.515521 CTCCCGTGCACTTTTGGGAC 61.516 60.000 22.18 0.00 45.66 4.46
115 116 1.826054 CCCGTGCACTTTTGGGACA 60.826 57.895 19.71 0.00 44.88 4.02
116 117 1.358759 CCGTGCACTTTTGGGACAC 59.641 57.895 16.19 0.00 39.29 3.67
117 118 1.101049 CCGTGCACTTTTGGGACACT 61.101 55.000 16.19 0.00 39.29 3.55
118 119 0.307760 CGTGCACTTTTGGGACACTC 59.692 55.000 16.19 0.00 39.29 3.51
119 120 1.680338 GTGCACTTTTGGGACACTCT 58.320 50.000 10.32 0.00 39.29 3.24
120 121 1.604278 GTGCACTTTTGGGACACTCTC 59.396 52.381 10.32 0.00 39.29 3.20
121 122 0.868406 GCACTTTTGGGACACTCTCG 59.132 55.000 0.00 0.00 39.29 4.04
122 123 1.512926 CACTTTTGGGACACTCTCGG 58.487 55.000 0.00 0.00 39.29 4.63
123 124 0.396811 ACTTTTGGGACACTCTCGGG 59.603 55.000 0.00 0.00 39.29 5.14
124 125 0.955919 CTTTTGGGACACTCTCGGGC 60.956 60.000 0.00 0.00 39.29 6.13
125 126 1.701031 TTTTGGGACACTCTCGGGCA 61.701 55.000 0.00 0.00 39.29 5.36
126 127 2.391724 TTTGGGACACTCTCGGGCAC 62.392 60.000 0.00 0.00 39.29 5.01
127 128 2.997897 GGGACACTCTCGGGCACT 60.998 66.667 0.00 0.00 0.00 4.40
128 129 2.584391 GGGACACTCTCGGGCACTT 61.584 63.158 0.00 0.00 0.00 3.16
129 130 1.374758 GGACACTCTCGGGCACTTG 60.375 63.158 0.00 0.00 0.00 3.16
130 131 2.029844 GACACTCTCGGGCACTTGC 61.030 63.158 0.00 0.00 41.14 4.01
131 132 2.031012 CACTCTCGGGCACTTGCA 59.969 61.111 3.15 0.00 44.36 4.08
132 133 1.597854 CACTCTCGGGCACTTGCAA 60.598 57.895 0.00 0.00 44.36 4.08
133 134 1.302033 ACTCTCGGGCACTTGCAAG 60.302 57.895 24.84 24.84 44.36 4.01
134 135 1.004560 CTCTCGGGCACTTGCAAGA 60.005 57.895 32.50 8.55 44.36 3.02
135 136 1.004560 TCTCGGGCACTTGCAAGAG 60.005 57.895 32.50 25.20 44.36 2.85
136 137 1.004560 CTCGGGCACTTGCAAGAGA 60.005 57.895 32.50 19.35 43.68 3.10
137 138 1.294659 CTCGGGCACTTGCAAGAGAC 61.295 60.000 32.50 26.34 43.68 3.36
138 139 1.597854 CGGGCACTTGCAAGAGACA 60.598 57.895 32.50 0.00 44.36 3.41
139 140 1.845809 CGGGCACTTGCAAGAGACAC 61.846 60.000 32.50 19.50 44.36 3.67
140 141 0.536006 GGGCACTTGCAAGAGACACT 60.536 55.000 32.50 6.30 44.36 3.55
141 142 0.871057 GGCACTTGCAAGAGACACTC 59.129 55.000 32.50 11.20 44.36 3.51
142 143 1.542108 GGCACTTGCAAGAGACACTCT 60.542 52.381 32.50 4.68 44.36 3.24
143 144 1.797635 GCACTTGCAAGAGACACTCTC 59.202 52.381 32.50 6.56 40.28 3.20
144 145 3.738240 GCACTTGCAAGAGACACTCTCG 61.738 54.545 32.50 2.77 43.64 4.04
150 151 4.417641 GAGACACTCTCGGACCCA 57.582 61.111 0.00 0.00 33.35 4.51
151 152 2.889200 GAGACACTCTCGGACCCAT 58.111 57.895 0.00 0.00 33.35 4.00
152 153 1.187087 GAGACACTCTCGGACCCATT 58.813 55.000 0.00 0.00 33.35 3.16
153 154 1.135333 GAGACACTCTCGGACCCATTC 59.865 57.143 0.00 0.00 33.35 2.67
154 155 0.895530 GACACTCTCGGACCCATTCA 59.104 55.000 0.00 0.00 0.00 2.57
155 156 1.275291 GACACTCTCGGACCCATTCAA 59.725 52.381 0.00 0.00 0.00 2.69
156 157 1.697432 ACACTCTCGGACCCATTCAAA 59.303 47.619 0.00 0.00 0.00 2.69
157 158 2.105821 ACACTCTCGGACCCATTCAAAA 59.894 45.455 0.00 0.00 0.00 2.44
158 159 2.484264 CACTCTCGGACCCATTCAAAAC 59.516 50.000 0.00 0.00 0.00 2.43
159 160 2.105821 ACTCTCGGACCCATTCAAAACA 59.894 45.455 0.00 0.00 0.00 2.83
160 161 2.484264 CTCTCGGACCCATTCAAAACAC 59.516 50.000 0.00 0.00 0.00 3.32
161 162 2.105821 TCTCGGACCCATTCAAAACACT 59.894 45.455 0.00 0.00 0.00 3.55
162 163 2.884639 CTCGGACCCATTCAAAACACTT 59.115 45.455 0.00 0.00 0.00 3.16
163 164 2.882137 TCGGACCCATTCAAAACACTTC 59.118 45.455 0.00 0.00 0.00 3.01
164 165 2.030274 CGGACCCATTCAAAACACTTCC 60.030 50.000 0.00 0.00 0.00 3.46
165 166 2.030274 GGACCCATTCAAAACACTTCCG 60.030 50.000 0.00 0.00 0.00 4.30
166 167 2.882137 GACCCATTCAAAACACTTCCGA 59.118 45.455 0.00 0.00 0.00 4.55
167 168 3.292460 ACCCATTCAAAACACTTCCGAA 58.708 40.909 0.00 0.00 0.00 4.30
168 169 3.702045 ACCCATTCAAAACACTTCCGAAA 59.298 39.130 0.00 0.00 0.00 3.46
169 170 4.343814 ACCCATTCAAAACACTTCCGAAAT 59.656 37.500 0.00 0.00 0.00 2.17
170 171 4.923281 CCCATTCAAAACACTTCCGAAATC 59.077 41.667 0.00 0.00 0.00 2.17
171 172 5.508825 CCCATTCAAAACACTTCCGAAATCA 60.509 40.000 0.00 0.00 0.00 2.57
172 173 6.158598 CCATTCAAAACACTTCCGAAATCAT 58.841 36.000 0.00 0.00 0.00 2.45
173 174 6.308766 CCATTCAAAACACTTCCGAAATCATC 59.691 38.462 0.00 0.00 0.00 2.92
174 175 5.371115 TCAAAACACTTCCGAAATCATCC 57.629 39.130 0.00 0.00 0.00 3.51
175 176 4.083537 TCAAAACACTTCCGAAATCATCCG 60.084 41.667 0.00 0.00 0.00 4.18
176 177 3.328382 AACACTTCCGAAATCATCCGA 57.672 42.857 0.00 0.00 0.00 4.55
177 178 3.328382 ACACTTCCGAAATCATCCGAA 57.672 42.857 0.00 0.00 0.00 4.30
178 179 3.670625 ACACTTCCGAAATCATCCGAAA 58.329 40.909 0.00 0.00 0.00 3.46
179 180 3.435671 ACACTTCCGAAATCATCCGAAAC 59.564 43.478 0.00 0.00 0.00 2.78
180 181 3.684788 CACTTCCGAAATCATCCGAAACT 59.315 43.478 0.00 0.00 0.00 2.66
181 182 3.933332 ACTTCCGAAATCATCCGAAACTC 59.067 43.478 0.00 0.00 0.00 3.01
182 183 3.887621 TCCGAAATCATCCGAAACTCT 57.112 42.857 0.00 0.00 0.00 3.24
183 184 4.202245 TCCGAAATCATCCGAAACTCTT 57.798 40.909 0.00 0.00 0.00 2.85
184 185 4.575885 TCCGAAATCATCCGAAACTCTTT 58.424 39.130 0.00 0.00 0.00 2.52
185 186 4.630069 TCCGAAATCATCCGAAACTCTTTC 59.370 41.667 0.00 0.00 36.32 2.62
195 196 3.748868 GAAACTCTTTCGGAGCCATTC 57.251 47.619 0.00 0.00 45.48 2.67
196 197 3.339141 GAAACTCTTTCGGAGCCATTCT 58.661 45.455 0.00 0.00 45.48 2.40
197 198 2.682155 ACTCTTTCGGAGCCATTCTC 57.318 50.000 0.00 0.00 45.48 2.87
198 199 2.183679 ACTCTTTCGGAGCCATTCTCT 58.816 47.619 0.00 0.00 45.48 3.10
199 200 2.167487 ACTCTTTCGGAGCCATTCTCTC 59.833 50.000 0.00 0.00 45.48 3.20
200 201 2.430332 CTCTTTCGGAGCCATTCTCTCT 59.570 50.000 0.00 0.00 41.60 3.10
201 202 2.834549 TCTTTCGGAGCCATTCTCTCTT 59.165 45.455 0.00 0.00 41.60 2.85
202 203 3.261897 TCTTTCGGAGCCATTCTCTCTTT 59.738 43.478 0.00 0.00 41.60 2.52
203 204 2.969628 TCGGAGCCATTCTCTCTTTC 57.030 50.000 0.00 0.00 41.60 2.62
204 205 2.461695 TCGGAGCCATTCTCTCTTTCT 58.538 47.619 0.00 0.00 41.60 2.52
205 206 2.428890 TCGGAGCCATTCTCTCTTTCTC 59.571 50.000 0.00 0.00 41.60 2.87
206 207 2.430332 CGGAGCCATTCTCTCTTTCTCT 59.570 50.000 0.00 0.00 41.60 3.10
207 208 3.118811 CGGAGCCATTCTCTCTTTCTCTT 60.119 47.826 0.00 0.00 41.60 2.85
208 209 4.098654 CGGAGCCATTCTCTCTTTCTCTTA 59.901 45.833 0.00 0.00 41.60 2.10
209 210 5.221422 CGGAGCCATTCTCTCTTTCTCTTAT 60.221 44.000 0.00 0.00 41.60 1.73
210 211 6.015856 CGGAGCCATTCTCTCTTTCTCTTATA 60.016 42.308 0.00 0.00 41.60 0.98
211 212 7.309744 CGGAGCCATTCTCTCTTTCTCTTATAT 60.310 40.741 0.00 0.00 41.60 0.86
212 213 8.034804 GGAGCCATTCTCTCTTTCTCTTATATC 58.965 40.741 0.00 0.00 41.60 1.63
213 214 7.906327 AGCCATTCTCTCTTTCTCTTATATCC 58.094 38.462 0.00 0.00 0.00 2.59
214 215 7.734410 AGCCATTCTCTCTTTCTCTTATATCCT 59.266 37.037 0.00 0.00 0.00 3.24
215 216 8.034804 GCCATTCTCTCTTTCTCTTATATCCTC 58.965 40.741 0.00 0.00 0.00 3.71
216 217 9.312904 CCATTCTCTCTTTCTCTTATATCCTCT 57.687 37.037 0.00 0.00 0.00 3.69
245 246 7.869016 CTCAAATGAGTCACTAGTCGTTAAA 57.131 36.000 0.00 0.00 33.91 1.52
246 247 7.869016 TCAAATGAGTCACTAGTCGTTAAAG 57.131 36.000 0.00 0.00 33.91 1.85
247 248 6.365247 TCAAATGAGTCACTAGTCGTTAAAGC 59.635 38.462 0.00 0.00 33.91 3.51
248 249 4.841443 TGAGTCACTAGTCGTTAAAGCA 57.159 40.909 0.00 0.00 0.00 3.91
249 250 5.386958 TGAGTCACTAGTCGTTAAAGCAT 57.613 39.130 0.00 0.00 0.00 3.79
250 251 5.161358 TGAGTCACTAGTCGTTAAAGCATG 58.839 41.667 0.00 0.00 0.00 4.06
251 252 5.135508 AGTCACTAGTCGTTAAAGCATGT 57.864 39.130 0.00 0.00 0.00 3.21
252 253 4.923871 AGTCACTAGTCGTTAAAGCATGTG 59.076 41.667 0.00 0.00 0.00 3.21
253 254 4.091509 GTCACTAGTCGTTAAAGCATGTGG 59.908 45.833 0.00 0.00 0.00 4.17
254 255 3.000727 ACTAGTCGTTAAAGCATGTGGC 58.999 45.455 0.00 0.00 45.30 5.01
255 256 1.165270 AGTCGTTAAAGCATGTGGCC 58.835 50.000 0.00 0.00 46.50 5.36
256 257 0.170339 GTCGTTAAAGCATGTGGCCC 59.830 55.000 0.00 0.00 46.50 5.80
257 258 0.037590 TCGTTAAAGCATGTGGCCCT 59.962 50.000 0.00 0.00 46.50 5.19
258 259 0.171007 CGTTAAAGCATGTGGCCCTG 59.829 55.000 0.00 0.00 46.50 4.45
259 260 0.108662 GTTAAAGCATGTGGCCCTGC 60.109 55.000 12.74 12.74 46.50 4.85
260 261 0.541530 TTAAAGCATGTGGCCCTGCA 60.542 50.000 20.26 9.11 46.50 4.41
261 262 0.966875 TAAAGCATGTGGCCCTGCAG 60.967 55.000 20.26 6.78 46.50 4.41
262 263 4.753662 AGCATGTGGCCCTGCAGG 62.754 66.667 26.87 26.87 46.50 4.85
264 265 2.283388 CATGTGGCCCTGCAGGTT 60.283 61.111 30.63 5.92 38.26 3.50
265 266 2.036256 ATGTGGCCCTGCAGGTTC 59.964 61.111 30.63 21.45 38.26 3.62
266 267 2.844195 ATGTGGCCCTGCAGGTTCA 61.844 57.895 30.63 23.68 38.26 3.18
267 268 2.674380 GTGGCCCTGCAGGTTCAG 60.674 66.667 30.63 16.64 38.26 3.02
268 269 3.177884 TGGCCCTGCAGGTTCAGT 61.178 61.111 30.63 0.00 38.26 3.41
269 270 2.674380 GGCCCTGCAGGTTCAGTG 60.674 66.667 30.63 15.52 38.26 3.66
270 271 2.431683 GCCCTGCAGGTTCAGTGA 59.568 61.111 30.63 0.00 38.26 3.41
271 272 1.968540 GCCCTGCAGGTTCAGTGAC 60.969 63.158 30.63 7.43 38.26 3.67
272 273 1.451504 CCCTGCAGGTTCAGTGACA 59.548 57.895 30.63 0.00 32.32 3.58
273 274 0.037303 CCCTGCAGGTTCAGTGACAT 59.963 55.000 30.63 0.00 32.32 3.06
274 275 1.162698 CCTGCAGGTTCAGTGACATG 58.837 55.000 25.53 0.00 34.64 3.21
275 276 1.544093 CCTGCAGGTTCAGTGACATGT 60.544 52.381 25.53 0.00 34.08 3.21
276 277 2.289631 CCTGCAGGTTCAGTGACATGTA 60.290 50.000 25.53 0.00 34.08 2.29
277 278 2.998670 CTGCAGGTTCAGTGACATGTAG 59.001 50.000 5.57 9.57 37.61 2.74
278 279 2.632512 TGCAGGTTCAGTGACATGTAGA 59.367 45.455 0.00 0.00 34.08 2.59
279 280 2.996621 GCAGGTTCAGTGACATGTAGAC 59.003 50.000 0.00 0.00 34.08 2.59
280 281 3.554960 GCAGGTTCAGTGACATGTAGACA 60.555 47.826 0.00 0.00 34.08 3.41
281 282 4.825422 CAGGTTCAGTGACATGTAGACAT 58.175 43.478 0.00 0.00 36.96 3.06
294 295 5.697473 ATGTAGACATGACGTAGATCTGG 57.303 43.478 5.18 0.00 34.83 3.86
295 296 4.777463 TGTAGACATGACGTAGATCTGGA 58.223 43.478 5.18 0.00 0.00 3.86
296 297 5.377478 TGTAGACATGACGTAGATCTGGAT 58.623 41.667 5.18 0.00 0.00 3.41
297 298 6.531021 TGTAGACATGACGTAGATCTGGATA 58.469 40.000 5.18 0.00 0.00 2.59
298 299 6.996282 TGTAGACATGACGTAGATCTGGATAA 59.004 38.462 5.18 0.00 0.00 1.75
299 300 6.567687 AGACATGACGTAGATCTGGATAAG 57.432 41.667 5.18 0.00 0.00 1.73
300 301 6.299922 AGACATGACGTAGATCTGGATAAGA 58.700 40.000 5.18 0.00 39.94 2.10
301 302 6.773200 AGACATGACGTAGATCTGGATAAGAA 59.227 38.462 5.18 0.00 38.79 2.52
302 303 6.976088 ACATGACGTAGATCTGGATAAGAAG 58.024 40.000 5.18 0.00 38.79 2.85
303 304 6.547880 ACATGACGTAGATCTGGATAAGAAGT 59.452 38.462 5.18 0.00 38.79 3.01
304 305 6.378710 TGACGTAGATCTGGATAAGAAGTG 57.621 41.667 5.18 0.00 38.79 3.16
305 306 5.886474 TGACGTAGATCTGGATAAGAAGTGT 59.114 40.000 5.18 0.00 38.79 3.55
306 307 7.052248 TGACGTAGATCTGGATAAGAAGTGTA 58.948 38.462 5.18 0.00 38.79 2.90
307 308 7.226918 TGACGTAGATCTGGATAAGAAGTGTAG 59.773 40.741 5.18 0.00 38.79 2.74
308 309 7.055378 ACGTAGATCTGGATAAGAAGTGTAGT 58.945 38.462 5.18 0.00 38.79 2.73
309 310 7.556996 ACGTAGATCTGGATAAGAAGTGTAGTT 59.443 37.037 5.18 0.00 38.79 2.24
310 311 7.858382 CGTAGATCTGGATAAGAAGTGTAGTTG 59.142 40.741 5.18 0.00 38.79 3.16
311 312 7.726033 AGATCTGGATAAGAAGTGTAGTTGT 57.274 36.000 0.00 0.00 38.79 3.32
312 313 7.551585 AGATCTGGATAAGAAGTGTAGTTGTG 58.448 38.462 0.00 0.00 38.79 3.33
313 314 6.037786 TCTGGATAAGAAGTGTAGTTGTGG 57.962 41.667 0.00 0.00 29.54 4.17
314 315 4.575885 TGGATAAGAAGTGTAGTTGTGGC 58.424 43.478 0.00 0.00 0.00 5.01
315 316 4.286032 TGGATAAGAAGTGTAGTTGTGGCT 59.714 41.667 0.00 0.00 0.00 4.75
316 317 4.870991 GGATAAGAAGTGTAGTTGTGGCTC 59.129 45.833 0.00 0.00 0.00 4.70
317 318 5.337652 GGATAAGAAGTGTAGTTGTGGCTCT 60.338 44.000 0.00 0.00 0.00 4.09
318 319 3.393089 AGAAGTGTAGTTGTGGCTCTG 57.607 47.619 0.00 0.00 0.00 3.35
319 320 1.801178 GAAGTGTAGTTGTGGCTCTGC 59.199 52.381 0.00 0.00 0.00 4.26
320 321 0.319900 AGTGTAGTTGTGGCTCTGCG 60.320 55.000 0.00 0.00 0.00 5.18
321 322 0.600255 GTGTAGTTGTGGCTCTGCGT 60.600 55.000 0.00 0.00 0.00 5.24
322 323 0.319555 TGTAGTTGTGGCTCTGCGTC 60.320 55.000 0.00 0.00 0.00 5.19
323 324 1.080772 TAGTTGTGGCTCTGCGTCG 60.081 57.895 0.00 0.00 0.00 5.12
324 325 2.486636 TAGTTGTGGCTCTGCGTCGG 62.487 60.000 0.00 0.00 0.00 4.79
325 326 3.611674 TTGTGGCTCTGCGTCGGA 61.612 61.111 0.00 0.00 0.00 4.55
326 327 2.942796 TTGTGGCTCTGCGTCGGAT 61.943 57.895 0.00 0.00 0.00 4.18
327 328 2.125512 GTGGCTCTGCGTCGGATT 60.126 61.111 0.00 0.00 0.00 3.01
328 329 1.741770 GTGGCTCTGCGTCGGATTT 60.742 57.895 0.00 0.00 0.00 2.17
329 330 1.741401 TGGCTCTGCGTCGGATTTG 60.741 57.895 0.00 0.00 0.00 2.32
330 331 2.401195 GCTCTGCGTCGGATTTGC 59.599 61.111 0.00 0.00 0.00 3.68
331 332 3.093278 CTCTGCGTCGGATTTGCC 58.907 61.111 0.00 0.00 0.00 4.52
332 333 1.448540 CTCTGCGTCGGATTTGCCT 60.449 57.895 0.00 0.00 0.00 4.75
333 334 1.003839 TCTGCGTCGGATTTGCCTT 60.004 52.632 0.00 0.00 0.00 4.35
334 335 1.019278 TCTGCGTCGGATTTGCCTTC 61.019 55.000 0.00 0.00 0.00 3.46
335 336 1.982073 CTGCGTCGGATTTGCCTTCC 61.982 60.000 0.00 0.00 0.00 3.46
336 337 2.038269 GCGTCGGATTTGCCTTCCA 61.038 57.895 0.00 0.00 32.45 3.53
337 338 1.582610 GCGTCGGATTTGCCTTCCAA 61.583 55.000 0.00 0.00 32.45 3.53
338 339 1.094785 CGTCGGATTTGCCTTCCAAT 58.905 50.000 0.00 0.00 32.49 3.16
339 340 1.064060 CGTCGGATTTGCCTTCCAATC 59.936 52.381 0.00 0.00 32.49 2.67
340 341 2.369394 GTCGGATTTGCCTTCCAATCT 58.631 47.619 0.00 0.00 32.49 2.40
341 342 2.755103 GTCGGATTTGCCTTCCAATCTT 59.245 45.455 0.00 0.00 32.49 2.40
342 343 3.945285 GTCGGATTTGCCTTCCAATCTTA 59.055 43.478 0.00 0.00 32.49 2.10
343 344 4.035675 GTCGGATTTGCCTTCCAATCTTAG 59.964 45.833 0.00 0.00 32.49 2.18
344 345 3.316308 CGGATTTGCCTTCCAATCTTAGG 59.684 47.826 0.00 0.00 32.49 2.69
345 346 4.281657 GGATTTGCCTTCCAATCTTAGGT 58.718 43.478 0.00 0.00 32.49 3.08
346 347 5.445964 GGATTTGCCTTCCAATCTTAGGTA 58.554 41.667 0.00 0.00 32.49 3.08
347 348 5.299531 GGATTTGCCTTCCAATCTTAGGTAC 59.700 44.000 0.00 0.00 32.49 3.34
348 349 4.919774 TTGCCTTCCAATCTTAGGTACA 57.080 40.909 0.00 0.00 0.00 2.90
349 350 4.216411 TGCCTTCCAATCTTAGGTACAC 57.784 45.455 0.00 0.00 0.00 2.90
350 351 3.844211 TGCCTTCCAATCTTAGGTACACT 59.156 43.478 0.00 0.00 0.00 3.55
351 352 4.192317 GCCTTCCAATCTTAGGTACACTG 58.808 47.826 0.00 0.00 0.00 3.66
352 353 4.192317 CCTTCCAATCTTAGGTACACTGC 58.808 47.826 0.00 0.00 0.00 4.40
353 354 4.080863 CCTTCCAATCTTAGGTACACTGCT 60.081 45.833 0.00 0.00 0.00 4.24
354 355 5.491982 CTTCCAATCTTAGGTACACTGCTT 58.508 41.667 0.00 0.00 0.00 3.91
355 356 4.832248 TCCAATCTTAGGTACACTGCTTG 58.168 43.478 0.00 0.00 0.00 4.01
356 357 3.941483 CCAATCTTAGGTACACTGCTTGG 59.059 47.826 0.00 0.00 0.00 3.61
357 358 4.323485 CCAATCTTAGGTACACTGCTTGGA 60.323 45.833 0.00 0.00 33.99 3.53
358 359 3.955650 TCTTAGGTACACTGCTTGGAC 57.044 47.619 0.00 0.00 38.54 4.02
359 360 3.507411 TCTTAGGTACACTGCTTGGACT 58.493 45.455 0.00 0.00 39.36 3.85
360 361 3.901844 TCTTAGGTACACTGCTTGGACTT 59.098 43.478 0.00 0.00 39.36 3.01
361 362 5.081728 TCTTAGGTACACTGCTTGGACTTA 58.918 41.667 0.00 0.00 39.36 2.24
362 363 3.679824 AGGTACACTGCTTGGACTTAC 57.320 47.619 0.00 0.00 39.36 2.34
363 364 2.302157 AGGTACACTGCTTGGACTTACC 59.698 50.000 0.00 0.00 39.36 2.85
372 373 3.955145 TGGACTTACCATGGTGCTG 57.045 52.632 28.17 18.07 44.64 4.41
373 374 0.327924 TGGACTTACCATGGTGCTGG 59.672 55.000 28.17 15.61 44.64 4.85
375 376 1.679032 GGACTTACCATGGTGCTGGTC 60.679 57.143 28.17 24.23 46.79 4.02
376 377 0.036388 ACTTACCATGGTGCTGGTCG 60.036 55.000 28.17 9.52 46.79 4.79
377 378 1.369091 CTTACCATGGTGCTGGTCGC 61.369 60.000 28.17 0.00 46.79 5.19
378 379 3.657448 TACCATGGTGCTGGTCGCG 62.657 63.158 28.17 0.00 46.79 5.87
387 388 3.805307 CTGGTCGCGCTCGTCTCT 61.805 66.667 5.56 0.00 36.96 3.10
388 389 4.103103 TGGTCGCGCTCGTCTCTG 62.103 66.667 5.56 0.00 36.96 3.35
390 391 4.468615 GTCGCGCTCGTCTCTGCT 62.469 66.667 5.56 0.00 36.96 4.24
391 392 4.467062 TCGCGCTCGTCTCTGCTG 62.467 66.667 5.56 0.00 36.96 4.41
394 395 4.426112 CGCTCGTCTCTGCTGGCA 62.426 66.667 0.00 0.00 0.00 4.92
395 396 2.047844 GCTCGTCTCTGCTGGCAA 60.048 61.111 0.00 0.00 0.00 4.52
396 397 2.386660 GCTCGTCTCTGCTGGCAAC 61.387 63.158 0.00 0.00 0.00 4.17
397 398 2.049156 TCGTCTCTGCTGGCAACG 60.049 61.111 10.73 10.73 42.51 4.10
415 416 2.760385 GCCGACCAGCCTACCTCT 60.760 66.667 0.00 0.00 0.00 3.69
416 417 2.787567 GCCGACCAGCCTACCTCTC 61.788 68.421 0.00 0.00 0.00 3.20
417 418 2.482333 CCGACCAGCCTACCTCTCG 61.482 68.421 0.00 0.00 0.00 4.04
418 419 1.451567 CGACCAGCCTACCTCTCGA 60.452 63.158 0.00 0.00 0.00 4.04
419 420 1.440938 CGACCAGCCTACCTCTCGAG 61.441 65.000 5.93 5.93 0.00 4.04
420 421 1.730451 GACCAGCCTACCTCTCGAGC 61.730 65.000 7.81 0.00 0.00 5.03
421 422 2.718731 CAGCCTACCTCTCGAGCG 59.281 66.667 7.81 0.13 0.00 5.03
422 423 3.213402 AGCCTACCTCTCGAGCGC 61.213 66.667 7.81 0.00 0.00 5.92
423 424 3.518998 GCCTACCTCTCGAGCGCA 61.519 66.667 11.47 0.00 0.00 6.09
424 425 3.064987 GCCTACCTCTCGAGCGCAA 62.065 63.158 11.47 0.00 0.00 4.85
425 426 1.736586 CCTACCTCTCGAGCGCAAT 59.263 57.895 11.47 0.00 0.00 3.56
426 427 0.596083 CCTACCTCTCGAGCGCAATG 60.596 60.000 11.47 0.00 0.00 2.82
427 428 0.596083 CTACCTCTCGAGCGCAATGG 60.596 60.000 11.47 5.23 0.00 3.16
428 429 2.016393 TACCTCTCGAGCGCAATGGG 62.016 60.000 11.47 6.38 0.00 4.00
429 430 3.267860 CTCTCGAGCGCAATGGGC 61.268 66.667 14.75 14.75 41.91 5.36
436 437 2.514592 GCGCAATGGGCTAGAGCA 60.515 61.111 15.28 0.00 44.36 4.26
437 438 2.828128 GCGCAATGGGCTAGAGCAC 61.828 63.158 15.28 0.00 46.69 4.40
443 444 3.604629 GGGCTAGAGCACGTGAGA 58.395 61.111 22.23 0.00 44.36 3.27
444 445 1.435515 GGGCTAGAGCACGTGAGAG 59.564 63.158 22.23 10.68 44.36 3.20
451 452 2.428569 GCACGTGAGAGCGACGAA 60.429 61.111 22.23 0.00 39.21 3.85
452 453 2.429351 GCACGTGAGAGCGACGAAG 61.429 63.158 22.23 0.00 39.21 3.79
453 454 1.797933 CACGTGAGAGCGACGAAGG 60.798 63.158 10.90 0.00 39.21 3.46
454 455 2.202492 CGTGAGAGCGACGAAGGG 60.202 66.667 0.00 0.00 39.21 3.95
455 456 2.507324 GTGAGAGCGACGAAGGGC 60.507 66.667 0.00 0.00 0.00 5.19
456 457 2.989253 TGAGAGCGACGAAGGGCA 60.989 61.111 0.00 0.00 33.53 5.36
457 458 2.202676 GAGAGCGACGAAGGGCAG 60.203 66.667 0.00 0.00 33.53 4.85
458 459 2.676822 AGAGCGACGAAGGGCAGA 60.677 61.111 0.00 0.00 33.53 4.26
459 460 2.214181 GAGAGCGACGAAGGGCAGAA 62.214 60.000 0.00 0.00 33.53 3.02
460 461 1.374252 GAGCGACGAAGGGCAGAAA 60.374 57.895 0.00 0.00 33.53 2.52
461 462 0.949105 GAGCGACGAAGGGCAGAAAA 60.949 55.000 0.00 0.00 33.53 2.29
462 463 0.534203 AGCGACGAAGGGCAGAAAAA 60.534 50.000 0.00 0.00 33.53 1.94
463 464 0.110192 GCGACGAAGGGCAGAAAAAG 60.110 55.000 0.00 0.00 0.00 2.27
464 465 1.508632 CGACGAAGGGCAGAAAAAGA 58.491 50.000 0.00 0.00 0.00 2.52
465 466 2.076863 CGACGAAGGGCAGAAAAAGAT 58.923 47.619 0.00 0.00 0.00 2.40
466 467 2.159653 CGACGAAGGGCAGAAAAAGATG 60.160 50.000 0.00 0.00 0.00 2.90
467 468 2.162408 GACGAAGGGCAGAAAAAGATGG 59.838 50.000 0.00 0.00 0.00 3.51
468 469 1.474077 CGAAGGGCAGAAAAAGATGGG 59.526 52.381 0.00 0.00 0.00 4.00
469 470 1.827344 GAAGGGCAGAAAAAGATGGGG 59.173 52.381 0.00 0.00 0.00 4.96
470 471 0.041684 AGGGCAGAAAAAGATGGGGG 59.958 55.000 0.00 0.00 0.00 5.40
471 472 0.041090 GGGCAGAAAAAGATGGGGGA 59.959 55.000 0.00 0.00 0.00 4.81
472 473 1.186200 GGCAGAAAAAGATGGGGGAC 58.814 55.000 0.00 0.00 0.00 4.46
473 474 1.272704 GGCAGAAAAAGATGGGGGACT 60.273 52.381 0.00 0.00 0.00 3.85
474 475 2.025321 GGCAGAAAAAGATGGGGGACTA 60.025 50.000 0.00 0.00 0.00 2.59
475 476 3.017442 GCAGAAAAAGATGGGGGACTAC 58.983 50.000 0.00 0.00 0.00 2.73
476 477 3.621558 CAGAAAAAGATGGGGGACTACC 58.378 50.000 0.00 0.00 39.11 3.18
520 521 3.367743 CGTCCCTTCCGTCACCGA 61.368 66.667 0.00 0.00 35.63 4.69
581 582 2.359975 CGGGTGGCAAGGAGGAAC 60.360 66.667 0.00 0.00 0.00 3.62
585 586 2.852075 TGGCAAGGAGGAACCGGT 60.852 61.111 0.00 0.00 44.74 5.28
592 593 0.252742 AGGAGGAACCGGTTGAGGAT 60.253 55.000 27.87 5.23 44.74 3.24
594 595 0.179108 GAGGAACCGGTTGAGGATCG 60.179 60.000 27.87 0.00 38.61 3.69
598 599 2.629051 GAACCGGTTGAGGATCGATTT 58.371 47.619 27.87 0.00 38.61 2.17
599 600 3.431207 GGAACCGGTTGAGGATCGATTTA 60.431 47.826 27.87 0.00 38.61 1.40
600 601 4.377897 GAACCGGTTGAGGATCGATTTAT 58.622 43.478 27.87 0.00 38.61 1.40
601 602 3.991367 ACCGGTTGAGGATCGATTTATC 58.009 45.455 0.00 0.00 38.61 1.75
602 603 3.641906 ACCGGTTGAGGATCGATTTATCT 59.358 43.478 0.00 0.00 38.61 1.98
603 604 3.990469 CCGGTTGAGGATCGATTTATCTG 59.010 47.826 0.00 0.00 38.61 2.90
604 605 4.501571 CCGGTTGAGGATCGATTTATCTGT 60.502 45.833 0.00 0.00 38.61 3.41
605 606 4.445718 CGGTTGAGGATCGATTTATCTGTG 59.554 45.833 0.00 0.00 38.61 3.66
606 607 5.360591 GGTTGAGGATCGATTTATCTGTGT 58.639 41.667 0.00 0.00 38.61 3.72
607 608 5.235186 GGTTGAGGATCGATTTATCTGTGTG 59.765 44.000 0.00 0.00 38.61 3.82
637 911 1.305201 GGGGTGTGTGTGTGTTAGTG 58.695 55.000 0.00 0.00 0.00 2.74
641 915 3.426963 GGGTGTGTGTGTGTTAGTGTTTG 60.427 47.826 0.00 0.00 0.00 2.93
644 918 1.398739 TGTGTGTGTTAGTGTTTGGCG 59.601 47.619 0.00 0.00 0.00 5.69
646 920 1.666700 TGTGTGTTAGTGTTTGGCGAC 59.333 47.619 0.00 0.00 0.00 5.19
658 932 0.457166 TTGGCGACCGTCGTCTAATG 60.457 55.000 24.70 0.00 45.98 1.90
660 934 1.138247 GCGACCGTCGTCTAATGGT 59.862 57.895 21.37 0.00 42.81 3.55
668 942 2.334838 GTCGTCTAATGGTGTGTGACC 58.665 52.381 0.00 0.00 46.37 4.02
693 967 2.281484 TCTTCACCAGGGCAACGC 60.281 61.111 0.00 0.00 37.60 4.84
710 984 2.459442 GCGCCATCTGACAGTGAGC 61.459 63.158 0.00 3.10 0.00 4.26
715 989 0.107800 CATCTGACAGTGAGCCCCAG 60.108 60.000 1.59 0.00 0.00 4.45
729 1003 1.134367 GCCCCAGCGTTCTATTTTTCC 59.866 52.381 0.00 0.00 0.00 3.13
737 1011 4.825085 AGCGTTCTATTTTTCCCTCAAACA 59.175 37.500 0.00 0.00 0.00 2.83
738 1012 4.915667 GCGTTCTATTTTTCCCTCAAACAC 59.084 41.667 0.00 0.00 0.00 3.32
739 1013 5.506649 GCGTTCTATTTTTCCCTCAAACACA 60.507 40.000 0.00 0.00 0.00 3.72
848 2169 4.030216 GGGTCCACAAATATGATGGGTTT 58.970 43.478 0.00 0.00 34.03 3.27
850 2171 4.466015 GGTCCACAAATATGATGGGTTTGT 59.534 41.667 0.00 0.00 44.35 2.83
866 2187 1.153539 TTGTGGATTGGGGTGGAAGA 58.846 50.000 0.00 0.00 0.00 2.87
876 2197 1.140772 GGGTGGAAGAAAGGGGTCCT 61.141 60.000 0.00 0.00 33.87 3.85
915 2237 0.526662 CCGAGAGCAACGTCCTAACT 59.473 55.000 0.00 0.00 0.00 2.24
947 2274 0.951040 CAACCTCGGCTTCGCTTTCT 60.951 55.000 0.00 0.00 0.00 2.52
1107 2458 1.528542 CCTACAGCCCTCCGATCGA 60.529 63.158 18.66 1.60 0.00 3.59
1137 2488 0.253630 AGGGGGCCAATTCTCTGGTA 60.254 55.000 4.39 0.00 38.86 3.25
1707 3225 5.681982 CGAACTTCGAACTACATCTATGGAC 59.318 44.000 5.15 0.00 43.74 4.02
1920 3456 5.363562 ACTTCATGGATCTGTTGATAGCA 57.636 39.130 0.00 0.00 32.19 3.49
1950 3487 3.366440 CCTACTTCATGTACGGTAGGC 57.634 52.381 16.48 0.00 42.83 3.93
1960 3497 0.251916 TACGGTAGGCTGCAATTGCT 59.748 50.000 29.37 13.14 42.66 3.91
2101 3680 1.783140 CGTAGCGTCGGCCTAATTAAC 59.217 52.381 0.00 0.00 41.24 2.01
2105 3684 2.428171 AGCGTCGGCCTAATTAACTGTA 59.572 45.455 0.00 0.00 41.24 2.74
2127 3706 4.072131 AGTGGCGAAAGAAGAAGCATTAA 58.928 39.130 0.00 0.00 0.00 1.40
2237 4093 9.619316 TGCACAGTTTATTATTGTGAAATGTAC 57.381 29.630 7.93 0.00 43.68 2.90
2238 4094 9.072294 GCACAGTTTATTATTGTGAAATGTACC 57.928 33.333 7.93 0.00 43.68 3.34
2239 4095 9.567848 CACAGTTTATTATTGTGAAATGTACCC 57.432 33.333 0.00 0.00 43.68 3.69
2385 4615 5.845103 TCAGCGGTATGTCGGATTATTTTA 58.155 37.500 0.00 0.00 0.00 1.52
2391 4621 7.744715 GCGGTATGTCGGATTATTTTATTTGAG 59.255 37.037 0.00 0.00 0.00 3.02
2474 4704 3.883489 GTGCTACCTTTTCCTTGTCTGTT 59.117 43.478 0.00 0.00 0.00 3.16
2480 4710 3.363178 CTTTTCCTTGTCTGTTCGTTGC 58.637 45.455 0.00 0.00 0.00 4.17
2679 4909 6.902341 TCAACTGTATTGCTGATTTCTTGTC 58.098 36.000 0.00 0.00 0.00 3.18
3615 5849 3.304391 GCTGCTGTAAATCGTTTTGGTGA 60.304 43.478 1.69 0.00 0.00 4.02
3784 6051 9.632807 CTCCCTCTGTAAAGAAATATAAGATCG 57.367 37.037 0.00 0.00 0.00 3.69
3876 6164 2.370849 TGGGTAGAAGTTTGGGTGAGTC 59.629 50.000 0.00 0.00 0.00 3.36
4421 6749 7.047891 TGTTCTTACCATCATTGCTTACTAGG 58.952 38.462 0.00 0.00 0.00 3.02
4567 6918 5.369187 CGTCGATCATGATTATTTGTGCTC 58.631 41.667 10.14 0.00 0.00 4.26
4573 6924 6.741992 TCATGATTATTTGTGCTCGAGTTT 57.258 33.333 15.13 0.00 0.00 2.66
4626 6980 6.862090 GTCGCCCTTTGTATAGTATAGTTCTG 59.138 42.308 0.00 0.00 0.00 3.02
4663 7028 4.124970 ACCGAGGACTACTTTTTGTGTTC 58.875 43.478 0.00 0.00 0.00 3.18
4680 7046 2.771943 TGTTCGAGCCCTATCCTCATTT 59.228 45.455 0.00 0.00 0.00 2.32
4700 7066 5.392767 TTTTGTTGTTTAGCTGAACCACA 57.607 34.783 20.19 20.19 34.54 4.17
4730 7096 8.237267 AGAAATTAAAGGTGAACTATCAAAGCG 58.763 33.333 0.00 0.00 37.30 4.68
4731 7097 3.831715 AAAGGTGAACTATCAAAGCGC 57.168 42.857 0.00 0.00 37.30 5.92
4859 7229 2.102588 ACGTGAAGTACTGAAGCTGGTT 59.897 45.455 0.00 0.00 0.00 3.67
4948 7318 2.364632 GCCAAACAAAGCCAAGGTTTT 58.635 42.857 0.00 0.00 32.79 2.43
4963 7333 6.256321 GCCAAGGTTTTTATATGCTTGTCATG 59.744 38.462 0.00 0.00 36.63 3.07
4981 7351 5.708230 TGTCATGAACCCCATAGTACAAAAC 59.292 40.000 0.00 0.00 33.31 2.43
5329 7711 8.522830 TCCCAAAAAGCTTGTCTTAGATTTATG 58.477 33.333 0.00 0.00 32.98 1.90
5406 7788 7.068103 TGACAAATCTAAGACAAGCTTTTTGGA 59.932 33.333 16.28 10.62 36.69 3.53
5629 8046 3.191791 TGACAAACATGATGATGTGGCTG 59.808 43.478 11.95 0.00 42.30 4.85
5835 8268 4.445453 TGATATGCCTAACACTGAAGCAG 58.555 43.478 0.00 0.00 36.80 4.24
5988 8468 5.640732 GACGGCACACATAAATCAAAGAAT 58.359 37.500 0.00 0.00 0.00 2.40
6020 8502 7.648510 AGAACTAGAGTACAAAAGAGACAAACG 59.351 37.037 0.00 0.00 0.00 3.60
6086 8572 8.284945 TCATCTTTTCAATCTGAATCCGAAAT 57.715 30.769 0.00 0.00 36.11 2.17
6102 8589 4.404394 TCCGAAATGTAAGCAGTGGAGATA 59.596 41.667 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.659172 CCCAAGCGGAGGCAACCA 62.659 66.667 2.06 0.00 43.41 3.67
6 7 4.785453 GAGTGGCCCAAGCGGAGG 62.785 72.222 0.00 0.00 41.24 4.30
7 8 3.551496 TTGAGTGGCCCAAGCGGAG 62.551 63.158 0.00 0.00 41.24 4.63
8 9 3.551496 CTTGAGTGGCCCAAGCGGA 62.551 63.158 0.00 0.00 41.24 5.54
9 10 3.058160 CTTGAGTGGCCCAAGCGG 61.058 66.667 0.00 0.00 41.24 5.52
10 11 3.058160 CCTTGAGTGGCCCAAGCG 61.058 66.667 13.19 5.02 39.60 4.68
11 12 2.677875 CCCTTGAGTGGCCCAAGC 60.678 66.667 13.19 0.00 39.60 4.01
12 13 1.001641 CTCCCTTGAGTGGCCCAAG 60.002 63.158 12.01 12.01 40.37 3.61
13 14 3.170362 CTCCCTTGAGTGGCCCAA 58.830 61.111 0.00 0.00 33.70 4.12
14 15 3.650950 GCTCCCTTGAGTGGCCCA 61.651 66.667 0.00 0.00 40.95 5.36
15 16 4.785453 CGCTCCCTTGAGTGGCCC 62.785 72.222 0.00 0.00 43.87 5.80
27 28 2.032681 GTCATATGGGGCCGCTCC 59.967 66.667 21.80 0.76 0.00 4.70
28 29 2.032681 GGTCATATGGGGCCGCTC 59.967 66.667 21.80 1.59 0.00 5.03
29 30 3.570212 GGGTCATATGGGGCCGCT 61.570 66.667 21.80 9.06 0.00 5.52
30 31 4.660938 GGGGTCATATGGGGCCGC 62.661 72.222 14.01 14.01 0.00 6.53
31 32 2.854032 AGGGGTCATATGGGGCCG 60.854 66.667 2.13 0.00 0.00 6.13
32 33 2.539081 GGAGGGGTCATATGGGGCC 61.539 68.421 2.13 0.00 0.00 5.80
33 34 1.360393 TTGGAGGGGTCATATGGGGC 61.360 60.000 2.13 0.00 0.00 5.80
34 35 1.231018 TTTGGAGGGGTCATATGGGG 58.769 55.000 2.13 0.00 0.00 4.96
35 36 4.953781 ATATTTGGAGGGGTCATATGGG 57.046 45.455 2.13 0.00 0.00 4.00
36 37 5.415701 CGAAATATTTGGAGGGGTCATATGG 59.584 44.000 5.17 0.00 0.00 2.74
37 38 5.415701 CCGAAATATTTGGAGGGGTCATATG 59.584 44.000 11.39 0.00 0.00 1.78
38 39 5.312178 TCCGAAATATTTGGAGGGGTCATAT 59.688 40.000 11.39 0.00 0.00 1.78
39 40 4.661240 TCCGAAATATTTGGAGGGGTCATA 59.339 41.667 11.39 0.00 0.00 2.15
40 41 3.461831 TCCGAAATATTTGGAGGGGTCAT 59.538 43.478 11.39 0.00 0.00 3.06
41 42 2.847449 TCCGAAATATTTGGAGGGGTCA 59.153 45.455 11.39 0.00 0.00 4.02
42 43 3.570912 TCCGAAATATTTGGAGGGGTC 57.429 47.619 11.39 0.00 0.00 4.46
43 44 3.626475 GGTTCCGAAATATTTGGAGGGGT 60.626 47.826 11.39 0.00 32.39 4.95
44 45 2.956333 GGTTCCGAAATATTTGGAGGGG 59.044 50.000 11.39 2.95 32.39 4.79
45 46 3.898482 AGGTTCCGAAATATTTGGAGGG 58.102 45.455 11.39 5.12 32.39 4.30
46 47 5.066505 CAGAAGGTTCCGAAATATTTGGAGG 59.933 44.000 11.39 9.11 32.39 4.30
47 48 5.066505 CCAGAAGGTTCCGAAATATTTGGAG 59.933 44.000 11.39 2.81 32.39 3.86
48 49 4.947388 CCAGAAGGTTCCGAAATATTTGGA 59.053 41.667 11.39 12.06 0.00 3.53
49 50 5.248870 CCAGAAGGTTCCGAAATATTTGG 57.751 43.478 5.17 4.17 0.00 3.28
64 65 7.947282 TGTAATTTTTCAAAGGTACCAGAAGG 58.053 34.615 15.94 0.00 42.21 3.46
65 66 9.463443 CTTGTAATTTTTCAAAGGTACCAGAAG 57.537 33.333 15.94 0.76 0.00 2.85
66 67 9.191479 TCTTGTAATTTTTCAAAGGTACCAGAA 57.809 29.630 15.94 12.14 0.00 3.02
67 68 8.626526 GTCTTGTAATTTTTCAAAGGTACCAGA 58.373 33.333 15.94 6.14 0.00 3.86
68 69 7.589954 CGTCTTGTAATTTTTCAAAGGTACCAG 59.410 37.037 15.94 3.52 0.00 4.00
69 70 7.419204 CGTCTTGTAATTTTTCAAAGGTACCA 58.581 34.615 15.94 0.00 0.00 3.25
70 71 6.361481 GCGTCTTGTAATTTTTCAAAGGTACC 59.639 38.462 2.73 2.73 0.00 3.34
71 72 7.136772 AGCGTCTTGTAATTTTTCAAAGGTAC 58.863 34.615 0.00 0.00 0.00 3.34
72 73 7.266922 AGCGTCTTGTAATTTTTCAAAGGTA 57.733 32.000 0.00 0.00 0.00 3.08
73 74 6.144078 AGCGTCTTGTAATTTTTCAAAGGT 57.856 33.333 0.00 0.00 0.00 3.50
74 75 5.629435 GGAGCGTCTTGTAATTTTTCAAAGG 59.371 40.000 0.00 0.00 0.00 3.11
75 76 5.629435 GGGAGCGTCTTGTAATTTTTCAAAG 59.371 40.000 0.00 0.00 0.00 2.77
76 77 5.525199 GGGAGCGTCTTGTAATTTTTCAAA 58.475 37.500 0.00 0.00 0.00 2.69
77 78 4.319911 CGGGAGCGTCTTGTAATTTTTCAA 60.320 41.667 0.00 0.00 0.00 2.69
78 79 3.187637 CGGGAGCGTCTTGTAATTTTTCA 59.812 43.478 0.00 0.00 0.00 2.69
79 80 3.187842 ACGGGAGCGTCTTGTAATTTTTC 59.812 43.478 0.00 0.00 0.00 2.29
80 81 3.058501 CACGGGAGCGTCTTGTAATTTTT 60.059 43.478 0.00 0.00 0.00 1.94
81 82 2.482721 CACGGGAGCGTCTTGTAATTTT 59.517 45.455 0.00 0.00 0.00 1.82
82 83 2.073816 CACGGGAGCGTCTTGTAATTT 58.926 47.619 0.00 0.00 0.00 1.82
83 84 1.722011 CACGGGAGCGTCTTGTAATT 58.278 50.000 0.00 0.00 0.00 1.40
84 85 0.739813 GCACGGGAGCGTCTTGTAAT 60.740 55.000 0.00 0.00 0.00 1.89
85 86 1.373748 GCACGGGAGCGTCTTGTAA 60.374 57.895 0.00 0.00 0.00 2.41
86 87 2.260434 GCACGGGAGCGTCTTGTA 59.740 61.111 0.00 0.00 0.00 2.41
87 88 3.923864 TGCACGGGAGCGTCTTGT 61.924 61.111 0.00 0.00 37.31 3.16
88 89 3.414700 GTGCACGGGAGCGTCTTG 61.415 66.667 0.00 0.00 37.31 3.02
89 90 2.660258 AAAGTGCACGGGAGCGTCTT 62.660 55.000 12.01 0.00 37.31 3.01
90 91 2.660258 AAAAGTGCACGGGAGCGTCT 62.660 55.000 12.01 0.00 37.31 4.18
91 92 2.251642 AAAAGTGCACGGGAGCGTC 61.252 57.895 12.01 0.00 37.31 5.19
92 93 2.203153 AAAAGTGCACGGGAGCGT 60.203 55.556 12.01 0.00 37.31 5.07
93 94 2.252260 CAAAAGTGCACGGGAGCG 59.748 61.111 12.01 0.00 37.31 5.03
94 95 2.644992 CCAAAAGTGCACGGGAGC 59.355 61.111 12.01 0.00 0.00 4.70
95 96 1.228124 TCCCAAAAGTGCACGGGAG 60.228 57.895 22.18 10.09 42.94 4.30
96 97 1.527380 GTCCCAAAAGTGCACGGGA 60.527 57.895 22.18 22.18 45.66 5.14
97 98 1.826054 TGTCCCAAAAGTGCACGGG 60.826 57.895 18.66 18.66 40.32 5.28
98 99 1.101049 AGTGTCCCAAAAGTGCACGG 61.101 55.000 12.01 6.27 35.46 4.94
99 100 0.307760 GAGTGTCCCAAAAGTGCACG 59.692 55.000 12.01 0.00 35.46 5.34
100 101 1.604278 GAGAGTGTCCCAAAAGTGCAC 59.396 52.381 9.40 9.40 0.00 4.57
101 102 1.810031 CGAGAGTGTCCCAAAAGTGCA 60.810 52.381 0.00 0.00 0.00 4.57
102 103 0.868406 CGAGAGTGTCCCAAAAGTGC 59.132 55.000 0.00 0.00 0.00 4.40
103 104 1.512926 CCGAGAGTGTCCCAAAAGTG 58.487 55.000 0.00 0.00 0.00 3.16
104 105 0.396811 CCCGAGAGTGTCCCAAAAGT 59.603 55.000 0.00 0.00 0.00 2.66
105 106 0.955919 GCCCGAGAGTGTCCCAAAAG 60.956 60.000 0.00 0.00 0.00 2.27
106 107 1.072505 GCCCGAGAGTGTCCCAAAA 59.927 57.895 0.00 0.00 0.00 2.44
107 108 2.144078 TGCCCGAGAGTGTCCCAAA 61.144 57.895 0.00 0.00 0.00 3.28
108 109 2.525629 TGCCCGAGAGTGTCCCAA 60.526 61.111 0.00 0.00 0.00 4.12
109 110 3.311110 GTGCCCGAGAGTGTCCCA 61.311 66.667 0.00 0.00 0.00 4.37
110 111 2.584391 AAGTGCCCGAGAGTGTCCC 61.584 63.158 0.00 0.00 0.00 4.46
111 112 1.374758 CAAGTGCCCGAGAGTGTCC 60.375 63.158 0.00 0.00 0.00 4.02
112 113 2.029844 GCAAGTGCCCGAGAGTGTC 61.030 63.158 0.00 0.00 34.31 3.67
113 114 2.031163 GCAAGTGCCCGAGAGTGT 59.969 61.111 0.00 0.00 34.31 3.55
114 115 1.572085 CTTGCAAGTGCCCGAGAGTG 61.572 60.000 18.65 0.00 41.18 3.51
115 116 1.302033 CTTGCAAGTGCCCGAGAGT 60.302 57.895 18.65 0.00 41.18 3.24
116 117 1.004560 TCTTGCAAGTGCCCGAGAG 60.005 57.895 25.19 0.00 41.18 3.20
117 118 1.004560 CTCTTGCAAGTGCCCGAGA 60.005 57.895 25.19 3.27 41.18 4.04
118 119 1.004560 TCTCTTGCAAGTGCCCGAG 60.005 57.895 25.19 14.57 41.18 4.63
119 120 1.301716 GTCTCTTGCAAGTGCCCGA 60.302 57.895 25.19 12.32 41.18 5.14
120 121 1.597854 TGTCTCTTGCAAGTGCCCG 60.598 57.895 25.19 10.40 41.18 6.13
121 122 0.536006 AGTGTCTCTTGCAAGTGCCC 60.536 55.000 25.19 16.17 41.18 5.36
122 123 0.871057 GAGTGTCTCTTGCAAGTGCC 59.129 55.000 25.19 14.12 41.18 5.01
123 124 1.797635 GAGAGTGTCTCTTGCAAGTGC 59.202 52.381 25.19 17.94 41.35 4.40
124 125 2.057316 CGAGAGTGTCTCTTGCAAGTG 58.943 52.381 25.19 22.48 41.35 3.16
125 126 1.000283 CCGAGAGTGTCTCTTGCAAGT 60.000 52.381 25.19 5.48 41.35 3.16
126 127 1.270826 TCCGAGAGTGTCTCTTGCAAG 59.729 52.381 20.81 20.81 41.35 4.01
127 128 1.000163 GTCCGAGAGTGTCTCTTGCAA 60.000 52.381 0.00 0.00 41.35 4.08
128 129 0.598562 GTCCGAGAGTGTCTCTTGCA 59.401 55.000 8.13 0.00 41.35 4.08
129 130 0.109039 GGTCCGAGAGTGTCTCTTGC 60.109 60.000 8.13 0.00 41.35 4.01
130 131 0.528470 GGGTCCGAGAGTGTCTCTTG 59.472 60.000 6.96 6.96 41.35 3.02
131 132 0.112606 TGGGTCCGAGAGTGTCTCTT 59.887 55.000 2.60 0.00 41.35 2.85
132 133 0.333312 ATGGGTCCGAGAGTGTCTCT 59.667 55.000 0.00 0.00 44.28 3.10
133 134 1.135333 GAATGGGTCCGAGAGTGTCTC 59.865 57.143 0.00 0.00 40.06 3.36
134 135 1.187087 GAATGGGTCCGAGAGTGTCT 58.813 55.000 0.00 0.00 0.00 3.41
135 136 0.895530 TGAATGGGTCCGAGAGTGTC 59.104 55.000 0.00 0.00 0.00 3.67
136 137 1.348064 TTGAATGGGTCCGAGAGTGT 58.652 50.000 0.00 0.00 0.00 3.55
137 138 2.472695 TTTGAATGGGTCCGAGAGTG 57.527 50.000 0.00 0.00 0.00 3.51
138 139 2.105821 TGTTTTGAATGGGTCCGAGAGT 59.894 45.455 0.00 0.00 0.00 3.24
139 140 2.484264 GTGTTTTGAATGGGTCCGAGAG 59.516 50.000 0.00 0.00 0.00 3.20
140 141 2.105821 AGTGTTTTGAATGGGTCCGAGA 59.894 45.455 0.00 0.00 0.00 4.04
141 142 2.504367 AGTGTTTTGAATGGGTCCGAG 58.496 47.619 0.00 0.00 0.00 4.63
142 143 2.649531 AGTGTTTTGAATGGGTCCGA 57.350 45.000 0.00 0.00 0.00 4.55
143 144 2.030274 GGAAGTGTTTTGAATGGGTCCG 60.030 50.000 0.00 0.00 0.00 4.79
144 145 2.030274 CGGAAGTGTTTTGAATGGGTCC 60.030 50.000 0.00 0.00 0.00 4.46
145 146 2.882137 TCGGAAGTGTTTTGAATGGGTC 59.118 45.455 0.00 0.00 0.00 4.46
146 147 2.938838 TCGGAAGTGTTTTGAATGGGT 58.061 42.857 0.00 0.00 0.00 4.51
147 148 4.314740 TTTCGGAAGTGTTTTGAATGGG 57.685 40.909 0.00 0.00 0.00 4.00
148 149 5.527951 TGATTTCGGAAGTGTTTTGAATGG 58.472 37.500 0.00 0.00 0.00 3.16
149 150 6.308766 GGATGATTTCGGAAGTGTTTTGAATG 59.691 38.462 0.00 0.00 0.00 2.67
150 151 6.389906 GGATGATTTCGGAAGTGTTTTGAAT 58.610 36.000 0.00 0.00 0.00 2.57
151 152 5.561919 CGGATGATTTCGGAAGTGTTTTGAA 60.562 40.000 0.00 0.00 0.00 2.69
152 153 4.083537 CGGATGATTTCGGAAGTGTTTTGA 60.084 41.667 0.00 0.00 0.00 2.69
153 154 4.083537 TCGGATGATTTCGGAAGTGTTTTG 60.084 41.667 0.00 0.00 31.37 2.44
154 155 4.069304 TCGGATGATTTCGGAAGTGTTTT 58.931 39.130 0.00 0.00 31.37 2.43
155 156 3.670625 TCGGATGATTTCGGAAGTGTTT 58.329 40.909 0.00 0.00 31.37 2.83
156 157 3.328382 TCGGATGATTTCGGAAGTGTT 57.672 42.857 0.00 0.00 31.37 3.32
157 158 3.328382 TTCGGATGATTTCGGAAGTGT 57.672 42.857 0.00 0.00 38.38 3.55
158 159 3.684788 AGTTTCGGATGATTTCGGAAGTG 59.315 43.478 0.00 0.00 42.50 3.16
159 160 3.933332 GAGTTTCGGATGATTTCGGAAGT 59.067 43.478 0.00 0.00 42.50 3.01
160 161 4.184629 AGAGTTTCGGATGATTTCGGAAG 58.815 43.478 0.00 0.00 42.50 3.46
161 162 4.202245 AGAGTTTCGGATGATTTCGGAA 57.798 40.909 0.00 0.00 40.67 4.30
162 163 3.887621 AGAGTTTCGGATGATTTCGGA 57.112 42.857 0.00 0.00 32.35 4.55
163 164 4.898370 GAAAGAGTTTCGGATGATTTCGG 58.102 43.478 0.00 0.00 0.00 4.30
175 176 3.339141 AGAATGGCTCCGAAAGAGTTTC 58.661 45.455 0.00 0.00 45.21 2.78
176 177 3.008485 AGAGAATGGCTCCGAAAGAGTTT 59.992 43.478 0.00 0.00 45.10 2.66
177 178 2.569404 AGAGAATGGCTCCGAAAGAGTT 59.431 45.455 0.00 0.00 45.10 3.01
178 179 2.167487 GAGAGAATGGCTCCGAAAGAGT 59.833 50.000 0.00 0.00 45.10 3.24
179 180 2.430332 AGAGAGAATGGCTCCGAAAGAG 59.570 50.000 0.00 0.00 45.10 2.85
180 181 2.461695 AGAGAGAATGGCTCCGAAAGA 58.538 47.619 0.00 0.00 45.10 2.52
181 182 2.977772 AGAGAGAATGGCTCCGAAAG 57.022 50.000 0.00 0.00 45.10 2.62
182 183 3.261897 AGAAAGAGAGAATGGCTCCGAAA 59.738 43.478 0.00 0.00 45.10 3.46
183 184 2.834549 AGAAAGAGAGAATGGCTCCGAA 59.165 45.455 0.00 0.00 45.10 4.30
184 185 2.428890 GAGAAAGAGAGAATGGCTCCGA 59.571 50.000 0.00 0.00 45.10 4.55
185 186 2.430332 AGAGAAAGAGAGAATGGCTCCG 59.570 50.000 0.00 0.00 45.10 4.63
186 187 4.486125 AAGAGAAAGAGAGAATGGCTCC 57.514 45.455 0.00 0.00 45.10 4.70
187 188 8.034804 GGATATAAGAGAAAGAGAGAATGGCTC 58.965 40.741 0.00 0.00 44.29 4.70
188 189 7.734410 AGGATATAAGAGAAAGAGAGAATGGCT 59.266 37.037 0.00 0.00 0.00 4.75
189 190 7.906327 AGGATATAAGAGAAAGAGAGAATGGC 58.094 38.462 0.00 0.00 0.00 4.40
190 191 9.312904 AGAGGATATAAGAGAAAGAGAGAATGG 57.687 37.037 0.00 0.00 0.00 3.16
222 223 6.365247 GCTTTAACGACTAGTGACTCATTTGA 59.635 38.462 0.00 0.00 0.00 2.69
223 224 6.145534 TGCTTTAACGACTAGTGACTCATTTG 59.854 38.462 0.00 0.00 0.00 2.32
224 225 6.220930 TGCTTTAACGACTAGTGACTCATTT 58.779 36.000 0.00 0.00 0.00 2.32
225 226 5.779922 TGCTTTAACGACTAGTGACTCATT 58.220 37.500 0.00 0.00 0.00 2.57
226 227 5.386958 TGCTTTAACGACTAGTGACTCAT 57.613 39.130 0.00 0.00 0.00 2.90
227 228 4.841443 TGCTTTAACGACTAGTGACTCA 57.159 40.909 0.00 0.00 0.00 3.41
228 229 5.061064 CACATGCTTTAACGACTAGTGACTC 59.939 44.000 0.00 0.00 0.00 3.36
229 230 4.923871 CACATGCTTTAACGACTAGTGACT 59.076 41.667 0.00 0.00 0.00 3.41
230 231 4.091509 CCACATGCTTTAACGACTAGTGAC 59.908 45.833 0.00 0.00 0.00 3.67
231 232 4.242475 CCACATGCTTTAACGACTAGTGA 58.758 43.478 0.00 0.00 0.00 3.41
232 233 3.181520 GCCACATGCTTTAACGACTAGTG 60.182 47.826 0.00 0.00 36.87 2.74
233 234 3.000727 GCCACATGCTTTAACGACTAGT 58.999 45.455 0.00 0.00 36.87 2.57
234 235 2.351726 GGCCACATGCTTTAACGACTAG 59.648 50.000 0.00 0.00 40.92 2.57
235 236 2.352388 GGCCACATGCTTTAACGACTA 58.648 47.619 0.00 0.00 40.92 2.59
236 237 1.165270 GGCCACATGCTTTAACGACT 58.835 50.000 0.00 0.00 40.92 4.18
237 238 0.170339 GGGCCACATGCTTTAACGAC 59.830 55.000 4.39 0.00 40.92 4.34
238 239 0.037590 AGGGCCACATGCTTTAACGA 59.962 50.000 6.18 0.00 40.92 3.85
239 240 0.171007 CAGGGCCACATGCTTTAACG 59.829 55.000 6.18 0.00 40.92 3.18
240 241 0.108662 GCAGGGCCACATGCTTTAAC 60.109 55.000 17.01 0.00 39.38 2.01
241 242 0.541530 TGCAGGGCCACATGCTTTAA 60.542 50.000 22.57 4.84 42.98 1.52
242 243 0.966875 CTGCAGGGCCACATGCTTTA 60.967 55.000 22.57 6.74 42.98 1.85
243 244 2.203669 TGCAGGGCCACATGCTTT 60.204 55.556 22.57 0.00 42.98 3.51
244 245 2.678934 CTGCAGGGCCACATGCTT 60.679 61.111 22.57 0.00 42.98 3.91
245 246 4.753662 CCTGCAGGGCCACATGCT 62.754 66.667 26.14 0.64 42.98 3.79
247 248 2.283388 AACCTGCAGGGCCACATG 60.283 61.111 35.42 9.25 40.27 3.21
248 249 2.036256 GAACCTGCAGGGCCACAT 59.964 61.111 35.42 11.84 40.27 3.21
249 250 3.496309 CTGAACCTGCAGGGCCACA 62.496 63.158 35.42 24.99 40.27 4.17
250 251 2.674380 CTGAACCTGCAGGGCCAC 60.674 66.667 35.42 22.14 40.27 5.01
251 252 3.177884 ACTGAACCTGCAGGGCCA 61.178 61.111 35.42 28.19 40.20 5.36
252 253 2.674380 CACTGAACCTGCAGGGCC 60.674 66.667 35.42 25.39 40.20 5.80
253 254 1.968540 GTCACTGAACCTGCAGGGC 60.969 63.158 35.42 26.12 39.17 5.19
254 255 0.037303 ATGTCACTGAACCTGCAGGG 59.963 55.000 35.42 20.37 40.69 4.45
255 256 1.162698 CATGTCACTGAACCTGCAGG 58.837 55.000 31.60 31.60 40.20 4.85
256 257 1.888215 ACATGTCACTGAACCTGCAG 58.112 50.000 6.78 6.78 41.63 4.41
257 258 2.632512 TCTACATGTCACTGAACCTGCA 59.367 45.455 0.00 0.00 0.00 4.41
258 259 2.996621 GTCTACATGTCACTGAACCTGC 59.003 50.000 0.00 0.00 0.00 4.85
259 260 4.257267 TGTCTACATGTCACTGAACCTG 57.743 45.455 0.00 0.00 0.00 4.00
260 261 4.825422 CATGTCTACATGTCACTGAACCT 58.175 43.478 13.76 0.00 46.40 3.50
272 273 5.377478 TCCAGATCTACGTCATGTCTACAT 58.623 41.667 0.00 0.00 36.96 2.29
273 274 4.777463 TCCAGATCTACGTCATGTCTACA 58.223 43.478 0.00 0.00 0.00 2.74
274 275 5.950758 ATCCAGATCTACGTCATGTCTAC 57.049 43.478 0.00 0.00 0.00 2.59
275 276 7.450903 TCTTATCCAGATCTACGTCATGTCTA 58.549 38.462 0.00 0.00 0.00 2.59
276 277 6.299922 TCTTATCCAGATCTACGTCATGTCT 58.700 40.000 0.00 0.00 0.00 3.41
277 278 6.561737 TCTTATCCAGATCTACGTCATGTC 57.438 41.667 0.00 0.00 0.00 3.06
278 279 6.547880 ACTTCTTATCCAGATCTACGTCATGT 59.452 38.462 0.00 0.00 0.00 3.21
279 280 6.860539 CACTTCTTATCCAGATCTACGTCATG 59.139 42.308 0.00 0.00 0.00 3.07
280 281 6.547880 ACACTTCTTATCCAGATCTACGTCAT 59.452 38.462 0.00 0.00 0.00 3.06
281 282 5.886474 ACACTTCTTATCCAGATCTACGTCA 59.114 40.000 0.00 0.00 0.00 4.35
282 283 6.380095 ACACTTCTTATCCAGATCTACGTC 57.620 41.667 0.00 0.00 0.00 4.34
283 284 7.055378 ACTACACTTCTTATCCAGATCTACGT 58.945 38.462 0.00 0.00 0.00 3.57
284 285 7.499321 ACTACACTTCTTATCCAGATCTACG 57.501 40.000 0.00 0.00 0.00 3.51
285 286 8.688151 ACAACTACACTTCTTATCCAGATCTAC 58.312 37.037 0.00 0.00 0.00 2.59
286 287 8.687242 CACAACTACACTTCTTATCCAGATCTA 58.313 37.037 0.00 0.00 0.00 1.98
287 288 7.364232 CCACAACTACACTTCTTATCCAGATCT 60.364 40.741 0.00 0.00 0.00 2.75
288 289 6.758886 CCACAACTACACTTCTTATCCAGATC 59.241 42.308 0.00 0.00 0.00 2.75
289 290 6.644347 CCACAACTACACTTCTTATCCAGAT 58.356 40.000 0.00 0.00 0.00 2.90
290 291 5.568825 GCCACAACTACACTTCTTATCCAGA 60.569 44.000 0.00 0.00 0.00 3.86
291 292 4.631813 GCCACAACTACACTTCTTATCCAG 59.368 45.833 0.00 0.00 0.00 3.86
292 293 4.286032 AGCCACAACTACACTTCTTATCCA 59.714 41.667 0.00 0.00 0.00 3.41
293 294 4.833390 AGCCACAACTACACTTCTTATCC 58.167 43.478 0.00 0.00 0.00 2.59
294 295 5.578727 CAGAGCCACAACTACACTTCTTATC 59.421 44.000 0.00 0.00 0.00 1.75
295 296 5.482908 CAGAGCCACAACTACACTTCTTAT 58.517 41.667 0.00 0.00 0.00 1.73
296 297 4.799586 GCAGAGCCACAACTACACTTCTTA 60.800 45.833 0.00 0.00 0.00 2.10
297 298 3.733337 CAGAGCCACAACTACACTTCTT 58.267 45.455 0.00 0.00 0.00 2.52
298 299 2.548920 GCAGAGCCACAACTACACTTCT 60.549 50.000 0.00 0.00 0.00 2.85
299 300 1.801178 GCAGAGCCACAACTACACTTC 59.199 52.381 0.00 0.00 0.00 3.01
300 301 1.873903 CGCAGAGCCACAACTACACTT 60.874 52.381 0.00 0.00 0.00 3.16
301 302 0.319900 CGCAGAGCCACAACTACACT 60.320 55.000 0.00 0.00 0.00 3.55
302 303 0.600255 ACGCAGAGCCACAACTACAC 60.600 55.000 0.00 0.00 0.00 2.90
303 304 0.319555 GACGCAGAGCCACAACTACA 60.320 55.000 0.00 0.00 0.00 2.74
304 305 1.344942 CGACGCAGAGCCACAACTAC 61.345 60.000 0.00 0.00 0.00 2.73
305 306 1.080772 CGACGCAGAGCCACAACTA 60.081 57.895 0.00 0.00 0.00 2.24
306 307 2.356313 CGACGCAGAGCCACAACT 60.356 61.111 0.00 0.00 0.00 3.16
307 308 3.414700 CCGACGCAGAGCCACAAC 61.415 66.667 0.00 0.00 0.00 3.32
308 309 2.449031 AATCCGACGCAGAGCCACAA 62.449 55.000 0.00 0.00 0.00 3.33
309 310 2.449031 AAATCCGACGCAGAGCCACA 62.449 55.000 0.00 0.00 0.00 4.17
310 311 1.741770 AAATCCGACGCAGAGCCAC 60.742 57.895 0.00 0.00 0.00 5.01
311 312 1.741401 CAAATCCGACGCAGAGCCA 60.741 57.895 0.00 0.00 0.00 4.75
312 313 3.093278 CAAATCCGACGCAGAGCC 58.907 61.111 0.00 0.00 0.00 4.70
313 314 2.401195 GCAAATCCGACGCAGAGC 59.599 61.111 0.00 0.00 0.00 4.09
314 315 1.021390 AAGGCAAATCCGACGCAGAG 61.021 55.000 0.00 0.00 40.77 3.35
315 316 1.003839 AAGGCAAATCCGACGCAGA 60.004 52.632 0.00 0.00 40.77 4.26
316 317 1.425428 GAAGGCAAATCCGACGCAG 59.575 57.895 0.00 0.00 40.77 5.18
317 318 2.038269 GGAAGGCAAATCCGACGCA 61.038 57.895 0.00 0.00 40.77 5.24
318 319 1.582610 TTGGAAGGCAAATCCGACGC 61.583 55.000 0.00 0.00 39.98 5.19
319 320 1.064060 GATTGGAAGGCAAATCCGACG 59.936 52.381 0.00 0.00 39.98 5.12
320 321 2.369394 AGATTGGAAGGCAAATCCGAC 58.631 47.619 0.00 0.00 39.98 4.79
321 322 2.806945 AGATTGGAAGGCAAATCCGA 57.193 45.000 0.00 0.00 39.98 4.55
322 323 3.316308 CCTAAGATTGGAAGGCAAATCCG 59.684 47.826 0.00 0.00 39.98 4.18
323 324 4.281657 ACCTAAGATTGGAAGGCAAATCC 58.718 43.478 0.00 0.00 34.02 3.01
324 325 5.885912 TGTACCTAAGATTGGAAGGCAAATC 59.114 40.000 0.00 0.00 33.42 2.17
325 326 5.652452 GTGTACCTAAGATTGGAAGGCAAAT 59.348 40.000 0.00 0.00 33.42 2.32
326 327 5.007682 GTGTACCTAAGATTGGAAGGCAAA 58.992 41.667 0.00 0.00 33.42 3.68
327 328 4.288626 AGTGTACCTAAGATTGGAAGGCAA 59.711 41.667 0.00 0.00 33.42 4.52
328 329 3.844211 AGTGTACCTAAGATTGGAAGGCA 59.156 43.478 0.00 0.00 33.42 4.75
329 330 4.192317 CAGTGTACCTAAGATTGGAAGGC 58.808 47.826 0.00 0.00 33.42 4.35
330 331 4.080863 AGCAGTGTACCTAAGATTGGAAGG 60.081 45.833 0.00 0.00 36.42 3.46
331 332 5.091261 AGCAGTGTACCTAAGATTGGAAG 57.909 43.478 0.00 0.00 0.00 3.46
332 333 5.245531 CAAGCAGTGTACCTAAGATTGGAA 58.754 41.667 0.00 0.00 0.00 3.53
333 334 4.323485 CCAAGCAGTGTACCTAAGATTGGA 60.323 45.833 13.25 0.00 37.45 3.53
334 335 3.941483 CCAAGCAGTGTACCTAAGATTGG 59.059 47.826 7.14 7.14 0.00 3.16
335 336 4.631813 GTCCAAGCAGTGTACCTAAGATTG 59.368 45.833 0.00 0.00 0.00 2.67
336 337 4.532521 AGTCCAAGCAGTGTACCTAAGATT 59.467 41.667 0.00 0.00 0.00 2.40
337 338 4.097418 AGTCCAAGCAGTGTACCTAAGAT 58.903 43.478 0.00 0.00 0.00 2.40
338 339 3.507411 AGTCCAAGCAGTGTACCTAAGA 58.493 45.455 0.00 0.00 0.00 2.10
339 340 3.963428 AGTCCAAGCAGTGTACCTAAG 57.037 47.619 0.00 0.00 0.00 2.18
340 341 4.020839 GGTAAGTCCAAGCAGTGTACCTAA 60.021 45.833 0.00 0.00 35.97 2.69
341 342 3.512724 GGTAAGTCCAAGCAGTGTACCTA 59.487 47.826 0.00 0.00 35.97 3.08
342 343 2.302157 GGTAAGTCCAAGCAGTGTACCT 59.698 50.000 0.00 0.00 35.97 3.08
343 344 2.038033 TGGTAAGTCCAAGCAGTGTACC 59.962 50.000 0.00 0.00 44.12 3.34
344 345 3.396260 TGGTAAGTCCAAGCAGTGTAC 57.604 47.619 0.00 0.00 44.12 2.90
355 356 3.175133 CCAGCACCATGGTAAGTCC 57.825 57.895 19.28 3.87 35.47 3.85
370 371 3.805307 AGAGACGAGCGCGACCAG 61.805 66.667 19.05 0.00 41.64 4.00
371 372 4.103103 CAGAGACGAGCGCGACCA 62.103 66.667 19.05 0.00 41.64 4.02
373 374 4.468615 AGCAGAGACGAGCGCGAC 62.469 66.667 19.05 11.15 41.64 5.19
374 375 4.467062 CAGCAGAGACGAGCGCGA 62.467 66.667 19.05 0.00 41.64 5.87
377 378 3.921767 TTGCCAGCAGAGACGAGCG 62.922 63.158 0.00 0.00 35.48 5.03
378 379 2.047844 TTGCCAGCAGAGACGAGC 60.048 61.111 0.00 0.00 0.00 5.03
379 380 2.091112 CGTTGCCAGCAGAGACGAG 61.091 63.158 9.17 0.00 35.90 4.18
380 381 2.049156 CGTTGCCAGCAGAGACGA 60.049 61.111 9.17 0.00 35.90 4.20
381 382 3.114616 CCGTTGCCAGCAGAGACG 61.115 66.667 8.07 8.07 0.00 4.18
382 383 3.426568 GCCGTTGCCAGCAGAGAC 61.427 66.667 0.00 0.00 0.00 3.36
398 399 2.760385 AGAGGTAGGCTGGTCGGC 60.760 66.667 0.00 0.00 38.75 5.54
399 400 2.482333 CGAGAGGTAGGCTGGTCGG 61.482 68.421 0.00 0.00 0.00 4.79
400 401 1.440938 CTCGAGAGGTAGGCTGGTCG 61.441 65.000 6.58 0.00 0.00 4.79
401 402 1.730451 GCTCGAGAGGTAGGCTGGTC 61.730 65.000 18.75 0.00 0.00 4.02
402 403 1.755008 GCTCGAGAGGTAGGCTGGT 60.755 63.158 18.75 0.00 0.00 4.00
403 404 2.840066 CGCTCGAGAGGTAGGCTGG 61.840 68.421 18.75 0.00 0.00 4.85
404 405 2.718731 CGCTCGAGAGGTAGGCTG 59.281 66.667 18.75 0.00 0.00 4.85
405 406 3.213402 GCGCTCGAGAGGTAGGCT 61.213 66.667 18.75 0.00 0.00 4.58
406 407 2.356818 ATTGCGCTCGAGAGGTAGGC 62.357 60.000 18.75 9.12 0.00 3.93
407 408 0.596083 CATTGCGCTCGAGAGGTAGG 60.596 60.000 18.75 0.00 0.00 3.18
408 409 0.596083 CCATTGCGCTCGAGAGGTAG 60.596 60.000 18.75 2.27 0.00 3.18
409 410 1.437573 CCATTGCGCTCGAGAGGTA 59.562 57.895 18.75 3.35 0.00 3.08
410 411 2.185350 CCATTGCGCTCGAGAGGT 59.815 61.111 18.75 0.00 0.00 3.85
411 412 2.587194 CCCATTGCGCTCGAGAGG 60.587 66.667 18.75 8.17 0.00 3.69
412 413 3.267860 GCCCATTGCGCTCGAGAG 61.268 66.667 18.75 15.34 0.00 3.20
421 422 1.450312 ACGTGCTCTAGCCCATTGC 60.450 57.895 0.00 0.00 41.18 3.56
422 423 0.108186 TCACGTGCTCTAGCCCATTG 60.108 55.000 11.67 0.00 41.18 2.82
423 424 0.176680 CTCACGTGCTCTAGCCCATT 59.823 55.000 11.67 0.00 41.18 3.16
424 425 0.684479 TCTCACGTGCTCTAGCCCAT 60.684 55.000 11.67 0.00 41.18 4.00
425 426 1.304134 TCTCACGTGCTCTAGCCCA 60.304 57.895 11.67 0.00 41.18 5.36
426 427 1.435515 CTCTCACGTGCTCTAGCCC 59.564 63.158 11.67 0.00 41.18 5.19
427 428 1.226831 GCTCTCACGTGCTCTAGCC 60.227 63.158 11.67 0.00 41.18 3.93
428 429 1.585002 CGCTCTCACGTGCTCTAGC 60.585 63.158 11.67 14.72 42.50 3.42
429 430 0.247894 GTCGCTCTCACGTGCTCTAG 60.248 60.000 11.67 2.78 0.00 2.43
430 431 1.794864 GTCGCTCTCACGTGCTCTA 59.205 57.895 11.67 0.00 0.00 2.43
431 432 2.563942 GTCGCTCTCACGTGCTCT 59.436 61.111 11.67 0.00 0.00 4.09
432 433 2.781750 TTCGTCGCTCTCACGTGCTC 62.782 60.000 11.67 0.00 38.45 4.26
433 434 2.788172 CTTCGTCGCTCTCACGTGCT 62.788 60.000 11.67 0.00 38.45 4.40
434 435 2.428569 TTCGTCGCTCTCACGTGC 60.429 61.111 11.67 0.00 38.45 5.34
435 436 1.797933 CCTTCGTCGCTCTCACGTG 60.798 63.158 9.94 9.94 38.45 4.49
436 437 2.561885 CCTTCGTCGCTCTCACGT 59.438 61.111 0.00 0.00 38.45 4.49
437 438 2.202492 CCCTTCGTCGCTCTCACG 60.202 66.667 0.00 0.00 38.67 4.35
438 439 2.507324 GCCCTTCGTCGCTCTCAC 60.507 66.667 0.00 0.00 0.00 3.51
439 440 2.989253 TGCCCTTCGTCGCTCTCA 60.989 61.111 0.00 0.00 0.00 3.27
440 441 2.202676 CTGCCCTTCGTCGCTCTC 60.203 66.667 0.00 0.00 0.00 3.20
441 442 1.816863 TTTCTGCCCTTCGTCGCTCT 61.817 55.000 0.00 0.00 0.00 4.09
442 443 0.949105 TTTTCTGCCCTTCGTCGCTC 60.949 55.000 0.00 0.00 0.00 5.03
443 444 0.534203 TTTTTCTGCCCTTCGTCGCT 60.534 50.000 0.00 0.00 0.00 4.93
444 445 0.110192 CTTTTTCTGCCCTTCGTCGC 60.110 55.000 0.00 0.00 0.00 5.19
445 446 1.508632 TCTTTTTCTGCCCTTCGTCG 58.491 50.000 0.00 0.00 0.00 5.12
446 447 2.162408 CCATCTTTTTCTGCCCTTCGTC 59.838 50.000 0.00 0.00 0.00 4.20
447 448 2.162681 CCATCTTTTTCTGCCCTTCGT 58.837 47.619 0.00 0.00 0.00 3.85
448 449 1.474077 CCCATCTTTTTCTGCCCTTCG 59.526 52.381 0.00 0.00 0.00 3.79
449 450 1.827344 CCCCATCTTTTTCTGCCCTTC 59.173 52.381 0.00 0.00 0.00 3.46
450 451 1.553184 CCCCCATCTTTTTCTGCCCTT 60.553 52.381 0.00 0.00 0.00 3.95
451 452 0.041684 CCCCCATCTTTTTCTGCCCT 59.958 55.000 0.00 0.00 0.00 5.19
452 453 0.041090 TCCCCCATCTTTTTCTGCCC 59.959 55.000 0.00 0.00 0.00 5.36
453 454 1.186200 GTCCCCCATCTTTTTCTGCC 58.814 55.000 0.00 0.00 0.00 4.85
454 455 2.222227 AGTCCCCCATCTTTTTCTGC 57.778 50.000 0.00 0.00 0.00 4.26
455 456 3.621558 GGTAGTCCCCCATCTTTTTCTG 58.378 50.000 0.00 0.00 0.00 3.02
469 470 0.750911 ATCGACGACAGGGGTAGTCC 60.751 60.000 0.00 0.00 44.02 3.85
470 471 1.872313 CTATCGACGACAGGGGTAGTC 59.128 57.143 0.00 0.00 43.62 2.59
471 472 1.487976 TCTATCGACGACAGGGGTAGT 59.512 52.381 2.84 0.00 35.43 2.73
472 473 2.144730 CTCTATCGACGACAGGGGTAG 58.855 57.143 2.84 0.00 0.00 3.18
473 474 1.764723 TCTCTATCGACGACAGGGGTA 59.235 52.381 2.63 0.00 0.00 3.69
474 475 0.545171 TCTCTATCGACGACAGGGGT 59.455 55.000 2.63 0.00 0.00 4.95
475 476 1.231221 CTCTCTATCGACGACAGGGG 58.769 60.000 2.63 0.00 0.00 4.79
476 477 1.231221 CCTCTCTATCGACGACAGGG 58.769 60.000 2.84 0.00 0.00 4.45
477 478 1.868498 GACCTCTCTATCGACGACAGG 59.132 57.143 2.84 5.36 0.00 4.00
478 479 1.523515 CGACCTCTCTATCGACGACAG 59.476 57.143 0.00 0.00 40.86 3.51
479 480 1.134877 ACGACCTCTCTATCGACGACA 60.135 52.381 0.00 0.00 40.86 4.35
480 481 1.258458 CACGACCTCTCTATCGACGAC 59.742 57.143 0.00 0.00 40.86 4.34
481 482 1.135721 TCACGACCTCTCTATCGACGA 59.864 52.381 0.00 0.00 40.86 4.20
581 582 3.990469 CAGATAAATCGATCCTCAACCGG 59.010 47.826 0.00 0.00 0.00 5.28
585 586 5.812127 CACACACAGATAAATCGATCCTCAA 59.188 40.000 0.00 0.00 0.00 3.02
592 593 3.993736 CCACACACACACAGATAAATCGA 59.006 43.478 0.00 0.00 0.00 3.59
594 595 3.440173 CCCCACACACACACAGATAAATC 59.560 47.826 0.00 0.00 0.00 2.17
598 599 0.690192 CCCCCACACACACACAGATA 59.310 55.000 0.00 0.00 0.00 1.98
599 600 1.455849 CCCCCACACACACACAGAT 59.544 57.895 0.00 0.00 0.00 2.90
600 601 2.915079 CCCCCACACACACACAGA 59.085 61.111 0.00 0.00 0.00 3.41
622 623 2.162608 GCCAAACACTAACACACACACA 59.837 45.455 0.00 0.00 0.00 3.72
626 627 1.666700 GTCGCCAAACACTAACACACA 59.333 47.619 0.00 0.00 0.00 3.72
627 628 1.003223 GGTCGCCAAACACTAACACAC 60.003 52.381 0.00 0.00 0.00 3.82
628 629 1.301423 GGTCGCCAAACACTAACACA 58.699 50.000 0.00 0.00 0.00 3.72
630 631 0.179078 ACGGTCGCCAAACACTAACA 60.179 50.000 0.00 0.00 0.00 2.41
644 918 1.068055 ACACACCATTAGACGACGGTC 60.068 52.381 0.00 0.00 43.76 4.79
646 920 1.068125 TCACACACCATTAGACGACGG 60.068 52.381 0.00 0.00 0.00 4.79
674 948 1.966451 CGTTGCCCTGGTGAAGACC 60.966 63.158 0.00 0.00 43.48 3.85
693 967 1.812922 GGCTCACTGTCAGATGGCG 60.813 63.158 6.91 0.00 0.00 5.69
695 969 1.222936 GGGGCTCACTGTCAGATGG 59.777 63.158 6.91 0.00 0.00 3.51
698 972 2.587247 GCTGGGGCTCACTGTCAGA 61.587 63.158 6.91 0.00 35.22 3.27
703 977 1.888436 TAGAACGCTGGGGCTCACTG 61.888 60.000 0.00 0.00 36.09 3.66
710 984 1.749063 GGGAAAAATAGAACGCTGGGG 59.251 52.381 0.00 0.00 0.00 4.96
715 989 4.915667 GTGTTTGAGGGAAAAATAGAACGC 59.084 41.667 0.00 0.00 0.00 4.84
729 1003 3.062099 CGGTCGATTACATGTGTTTGAGG 59.938 47.826 9.11 0.00 0.00 3.86
737 1011 3.550275 CGTTTGATCGGTCGATTACATGT 59.450 43.478 2.69 2.69 34.60 3.21
738 1012 3.550275 ACGTTTGATCGGTCGATTACATG 59.450 43.478 7.32 4.93 34.60 3.21
739 1013 3.777478 ACGTTTGATCGGTCGATTACAT 58.223 40.909 7.32 0.00 34.60 2.29
820 2108 6.209391 CCCATCATATTTGTGGACCCTAAATC 59.791 42.308 6.38 0.00 34.94 2.17
824 2112 4.051478 ACCCATCATATTTGTGGACCCTA 58.949 43.478 6.42 0.00 34.94 3.53
827 2115 4.466015 ACAAACCCATCATATTTGTGGACC 59.534 41.667 1.03 0.00 43.19 4.46
848 2169 1.153539 TTCTTCCACCCCAATCCACA 58.846 50.000 0.00 0.00 0.00 4.17
850 2171 1.077005 CCTTTCTTCCACCCCAATCCA 59.923 52.381 0.00 0.00 0.00 3.41
866 2187 2.740558 TAGGCCCCAAGGACCCCTTT 62.741 60.000 0.00 0.00 45.91 3.11
876 2197 1.076549 CTTGCTTGGTAGGCCCCAA 59.923 57.895 12.37 12.37 42.16 4.12
915 2237 0.537828 GAGGTTGTTGGGGCCGTTAA 60.538 55.000 0.00 0.00 0.00 2.01
969 2310 0.036164 TGAGGTGTTGGATGGAACGG 59.964 55.000 0.00 0.00 0.00 4.44
1116 2467 1.228510 CAGAGAATTGGCCCCCTCC 59.771 63.158 0.00 0.00 0.00 4.30
1191 2542 4.065281 AGGTACGCGGTGAGTGCC 62.065 66.667 12.47 1.03 43.39 5.01
1224 2575 2.011741 ATAACCGATCCTGCGTCGCA 62.012 55.000 20.44 20.44 37.75 5.10
1236 2587 3.181507 CGACGAAGAACCTGTATAACCGA 60.182 47.826 0.00 0.00 0.00 4.69
1517 2876 7.728532 ACCAGTTTATTTGTGAGGGAATTACTT 59.271 33.333 0.00 0.00 0.00 2.24
1707 3225 4.274950 ACCGACAGTCAAATTAACAACTGG 59.725 41.667 0.41 0.00 42.66 4.00
1920 3456 5.810587 CGTACATGAAGTAGGTTGCAGTTAT 59.189 40.000 0.00 0.00 34.65 1.89
1950 3487 2.353406 CCCAAAAGGAGAGCAATTGCAG 60.353 50.000 30.89 9.40 40.43 4.41
1960 3497 3.180282 CCTGCCCCCAAAAGGAGA 58.820 61.111 0.00 0.00 38.24 3.71
2101 3680 2.413453 GCTTCTTCTTTCGCCACTACAG 59.587 50.000 0.00 0.00 0.00 2.74
2105 3684 2.191128 ATGCTTCTTCTTTCGCCACT 57.809 45.000 0.00 0.00 0.00 4.00
2127 3706 8.810041 AGAAAACCAAGCATCTTAATCAAGAAT 58.190 29.630 0.00 0.00 43.89 2.40
2151 3730 8.212312 TGAACTAACCATAACCAAAGTTGTAGA 58.788 33.333 0.00 0.00 36.68 2.59
2236 4092 4.772100 CCCAATACTTGAAACAGAATGGGT 59.228 41.667 0.00 0.00 43.62 4.51
2237 4093 5.016173 TCCCAATACTTGAAACAGAATGGG 58.984 41.667 0.00 0.00 45.07 4.00
2238 4094 6.780457 ATCCCAATACTTGAAACAGAATGG 57.220 37.500 0.00 0.00 43.62 3.16
2284 4173 2.818751 TGAACCACCAACCAAACTCT 57.181 45.000 0.00 0.00 0.00 3.24
2385 4615 5.441718 TTGTCCTGCTAAGATCCTCAAAT 57.558 39.130 0.00 0.00 0.00 2.32
2391 4621 5.428253 TGTGTTATTGTCCTGCTAAGATCC 58.572 41.667 0.00 0.00 0.00 3.36
2474 4704 6.036735 GCAAGTTAGTGGATTTATAGCAACGA 59.963 38.462 0.00 0.00 0.00 3.85
2480 4710 6.058183 AGCAGGCAAGTTAGTGGATTTATAG 58.942 40.000 0.00 0.00 0.00 1.31
2658 4888 5.413833 CCAGACAAGAAATCAGCAATACAGT 59.586 40.000 0.00 0.00 0.00 3.55
2660 4890 5.316167 ACCAGACAAGAAATCAGCAATACA 58.684 37.500 0.00 0.00 0.00 2.29
2679 4909 6.017400 ACTGCAAATCAATCAAAGTACCAG 57.983 37.500 0.00 0.00 0.00 4.00
3615 5849 2.945080 ATCATGGTCATTCCGCAGAT 57.055 45.000 0.00 0.00 39.52 2.90
3923 6218 8.023021 ACCTACAATAGCATTGTGATAAGAGA 57.977 34.615 18.73 2.55 34.11 3.10
4421 6749 6.002062 AGCAAAACTAATGTGTCAAGCTAC 57.998 37.500 0.00 0.00 0.00 3.58
4470 6806 5.241506 TGATCTCAACCAACCAAATCTTCAC 59.758 40.000 0.00 0.00 0.00 3.18
4573 6924 7.618117 GGAGGGTTTTTCAAGGGATAATTCTAA 59.382 37.037 0.00 0.00 0.00 2.10
4594 6945 1.550130 TACAAAGGGCGACAGGAGGG 61.550 60.000 0.00 0.00 0.00 4.30
4626 6980 1.798813 CTCGGTACCAGAAGTTGCAAC 59.201 52.381 22.17 22.17 0.00 4.17
4663 7028 3.199880 ACAAAATGAGGATAGGGCTCG 57.800 47.619 0.00 0.00 0.00 5.03
4680 7046 5.392767 TTTGTGGTTCAGCTAAACAACAA 57.607 34.783 17.37 17.37 46.38 2.83
4730 7096 1.802960 CACAACATCTGGTGAGAGTGC 59.197 52.381 1.49 0.00 37.18 4.40
4731 7097 3.117491 ACACAACATCTGGTGAGAGTG 57.883 47.619 1.49 2.98 38.38 3.51
4832 7202 4.270325 AGCTTCAGTACTTCACGTGTTTTC 59.730 41.667 16.51 4.14 0.00 2.29
4948 7318 5.122707 TGGGGTTCATGACAAGCATATAA 57.877 39.130 0.00 0.00 34.82 0.98
4963 7333 4.076394 TGCAGTTTTGTACTATGGGGTTC 58.924 43.478 0.00 0.00 34.56 3.62
4981 7351 0.524862 GCCAAGGACTGACATTGCAG 59.475 55.000 0.00 6.56 38.70 4.41
5406 7788 5.838955 TGGATATATGATACTCCCTCCGTT 58.161 41.667 0.00 0.00 0.00 4.44
5629 8046 3.334691 TGATGTTCTCAACCAACCGATC 58.665 45.455 0.00 0.00 0.00 3.69
5835 8268 9.390795 CATGACTAAGTATTATTGCTGCAATTC 57.609 33.333 30.35 18.84 35.54 2.17
5988 8468 9.132923 TCTCTTTTGTACTCTAGTTCTCAGAAA 57.867 33.333 0.00 0.00 0.00 2.52
6086 8572 5.216622 AGGGTTATATCTCCACTGCTTACA 58.783 41.667 0.00 0.00 0.00 2.41
6102 8589 7.147320 TGACATGTCAATGAATAGGAGGGTTAT 60.147 37.037 26.02 0.00 36.53 1.89
6150 8637 5.171147 ACTTATTCGGACACAGATACTCG 57.829 43.478 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.