Multiple sequence alignment - TraesCS7D01G224700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G224700 chr7D 100.000 7599 0 0 1 7599 184998721 184991123 0.000000e+00 14033.0
1 TraesCS7D01G224700 chr7D 83.723 2224 280 47 1622 3791 412686779 412684584 0.000000e+00 2026.0
2 TraesCS7D01G224700 chr7D 98.695 613 6 2 6988 7599 77509883 77509272 0.000000e+00 1086.0
3 TraesCS7D01G224700 chr7D 98.366 612 8 2 6989 7599 72959917 72960527 0.000000e+00 1074.0
4 TraesCS7D01G224700 chr7D 97.059 34 0 1 1620 1653 539698341 539698309 1.000000e-03 56.5
5 TraesCS7D01G224700 chr7A 92.382 6301 302 63 696 6901 192374848 192368631 0.000000e+00 8813.0
6 TraesCS7D01G224700 chr7A 86.866 335 42 2 1 335 192375397 192375065 2.590000e-99 374.0
7 TraesCS7D01G224700 chr7A 88.462 78 8 1 6901 6978 192368330 192368254 8.120000e-15 93.5
8 TraesCS7D01G224700 chr7B 94.888 1428 38 7 4438 5858 154812266 154810867 0.000000e+00 2200.0
9 TraesCS7D01G224700 chr7B 89.758 1572 97 16 2897 4442 154817054 154815521 0.000000e+00 1953.0
10 TraesCS7D01G224700 chr7B 91.583 1295 94 7 1588 2872 154818341 154817052 0.000000e+00 1773.0
11 TraesCS7D01G224700 chr7B 94.737 950 25 8 639 1586 154819583 154818657 0.000000e+00 1454.0
12 TraesCS7D01G224700 chr7B 83.426 1442 220 15 2139 3576 145359373 145360799 0.000000e+00 1321.0
13 TraesCS7D01G224700 chr7B 91.521 802 52 8 6068 6860 154810844 154810050 0.000000e+00 1090.0
14 TraesCS7D01G224700 chr7B 81.928 332 45 9 328 644 154846382 154846051 4.520000e-67 267.0
15 TraesCS7D01G224700 chr7B 87.156 218 25 1 1 218 327139852 327139638 2.120000e-60 244.0
16 TraesCS7D01G224700 chr7B 92.045 88 6 1 6908 6995 154808763 154808677 1.040000e-23 122.0
17 TraesCS7D01G224700 chr7B 83.846 130 17 4 3659 3785 156954584 156954712 3.720000e-23 121.0
18 TraesCS7D01G224700 chr7B 93.827 81 3 1 215 295 327122387 327122309 3.720000e-23 121.0
19 TraesCS7D01G224700 chr7B 97.619 42 1 0 6860 6901 154809970 154809929 1.060000e-08 73.1
20 TraesCS7D01G224700 chr2D 82.907 2071 283 38 1734 3775 420979684 420981712 0.000000e+00 1797.0
21 TraesCS7D01G224700 chr2D 82.058 2012 307 38 1765 3736 627126032 627124035 0.000000e+00 1666.0
22 TraesCS7D01G224700 chr2D 99.013 608 4 2 6994 7599 107559195 107558588 0.000000e+00 1088.0
23 TraesCS7D01G224700 chr2D 98.847 607 6 1 6994 7599 292686593 292685987 0.000000e+00 1081.0
24 TraesCS7D01G224700 chr2D 83.916 143 19 2 3648 3790 46483797 46483935 4.780000e-27 134.0
25 TraesCS7D01G224700 chr3D 81.602 2185 268 54 1617 3750 612302967 612305068 0.000000e+00 1685.0
26 TraesCS7D01G224700 chr3D 100.000 29 0 0 1625 1653 501266204 501266176 4.000000e-03 54.7
27 TraesCS7D01G224700 chr2B 83.916 1803 228 39 1636 3391 611017010 611015223 0.000000e+00 1666.0
28 TraesCS7D01G224700 chr2B 84.271 1386 173 21 1635 2989 196361605 196362976 0.000000e+00 1310.0
29 TraesCS7D01G224700 chr5D 83.984 1717 234 18 1923 3614 411897535 411899235 0.000000e+00 1609.0
30 TraesCS7D01G224700 chr5D 81.605 299 51 3 3488 3785 539468103 539467808 2.120000e-60 244.0
31 TraesCS7D01G224700 chr5D 100.000 29 0 0 1624 1652 359990458 359990430 4.000000e-03 54.7
32 TraesCS7D01G224700 chr2A 81.582 1770 269 37 1872 3600 757812472 757810719 0.000000e+00 1410.0
33 TraesCS7D01G224700 chr2A 87.672 1160 125 15 2139 3290 662913330 662912181 0.000000e+00 1334.0
34 TraesCS7D01G224700 chr2A 83.303 1084 136 26 1635 2688 163470049 163468981 0.000000e+00 957.0
35 TraesCS7D01G224700 chr2A 79.832 119 22 2 3628 3745 210473882 210473765 1.360000e-12 86.1
36 TraesCS7D01G224700 chr6A 80.771 1789 261 40 1974 3720 116941397 116943144 0.000000e+00 1321.0
37 TraesCS7D01G224700 chr6A 83.846 260 30 9 1048 1305 514320575 514320824 3.540000e-58 237.0
38 TraesCS7D01G224700 chr1D 98.854 611 5 2 6989 7599 327112123 327112731 0.000000e+00 1088.0
39 TraesCS7D01G224700 chr1D 98.847 607 6 1 6993 7599 468425276 468425881 0.000000e+00 1081.0
40 TraesCS7D01G224700 chr1D 80.323 371 50 11 1782 2146 6739366 6739719 7.560000e-65 259.0
41 TraesCS7D01G224700 chr1D 100.000 31 0 0 1623 1653 433780496 433780526 2.960000e-04 58.4
42 TraesCS7D01G224700 chr1D 100.000 29 0 0 1625 1653 32715479 32715451 4.000000e-03 54.7
43 TraesCS7D01G224700 chr1D 100.000 28 0 0 1626 1653 450062929 450062956 1.400000e-02 52.8
44 TraesCS7D01G224700 chr6D 98.852 610 6 1 6991 7599 301806859 301807468 0.000000e+00 1086.0
45 TraesCS7D01G224700 chr6D 98.847 607 5 2 6993 7599 473252183 473252787 0.000000e+00 1081.0
46 TraesCS7D01G224700 chr6D 84.231 260 29 10 1048 1305 372358449 372358698 7.620000e-60 243.0
47 TraesCS7D01G224700 chr4D 99.012 607 5 1 6994 7599 58930452 58931058 0.000000e+00 1086.0
48 TraesCS7D01G224700 chr4D 83.088 816 130 7 2977 3789 368700383 368701193 0.000000e+00 736.0
49 TraesCS7D01G224700 chr4D 86.408 103 13 1 3574 3676 422963792 422963691 2.240000e-20 111.0
50 TraesCS7D01G224700 chr5A 84.383 794 78 24 1729 2489 88671520 88672300 0.000000e+00 737.0
51 TraesCS7D01G224700 chr5A 82.873 181 27 2 124 301 608449290 608449469 7.890000e-35 159.0
52 TraesCS7D01G224700 chrUn 80.387 724 94 20 1637 2328 135306379 135307086 2.450000e-139 507.0
53 TraesCS7D01G224700 chrUn 80.387 724 94 20 1637 2328 155973119 155972412 2.450000e-139 507.0
54 TraesCS7D01G224700 chr5B 77.431 288 54 10 3494 3777 479021996 479022276 2.190000e-35 161.0
55 TraesCS7D01G224700 chr5B 75.527 237 50 7 3375 3604 511316125 511315890 8.060000e-20 110.0
56 TraesCS7D01G224700 chr5B 100.000 31 0 0 1623 1653 116664803 116664833 2.960000e-04 58.4
57 TraesCS7D01G224700 chr4A 78.125 96 20 1 1626 1720 146543858 146543763 8.230000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G224700 chr7D 184991123 184998721 7598 True 14033.000000 14033 100.000000 1 7599 1 chr7D.!!$R2 7598
1 TraesCS7D01G224700 chr7D 412684584 412686779 2195 True 2026.000000 2026 83.723000 1622 3791 1 chr7D.!!$R3 2169
2 TraesCS7D01G224700 chr7D 77509272 77509883 611 True 1086.000000 1086 98.695000 6988 7599 1 chr7D.!!$R1 611
3 TraesCS7D01G224700 chr7D 72959917 72960527 610 False 1074.000000 1074 98.366000 6989 7599 1 chr7D.!!$F1 610
4 TraesCS7D01G224700 chr7A 192368254 192375397 7143 True 3093.500000 8813 89.236667 1 6978 3 chr7A.!!$R1 6977
5 TraesCS7D01G224700 chr7B 145359373 145360799 1426 False 1321.000000 1321 83.426000 2139 3576 1 chr7B.!!$F1 1437
6 TraesCS7D01G224700 chr7B 154808677 154819583 10906 True 1237.871429 2200 93.164429 639 6995 7 chr7B.!!$R4 6356
7 TraesCS7D01G224700 chr2D 420979684 420981712 2028 False 1797.000000 1797 82.907000 1734 3775 1 chr2D.!!$F2 2041
8 TraesCS7D01G224700 chr2D 627124035 627126032 1997 True 1666.000000 1666 82.058000 1765 3736 1 chr2D.!!$R3 1971
9 TraesCS7D01G224700 chr2D 107558588 107559195 607 True 1088.000000 1088 99.013000 6994 7599 1 chr2D.!!$R1 605
10 TraesCS7D01G224700 chr2D 292685987 292686593 606 True 1081.000000 1081 98.847000 6994 7599 1 chr2D.!!$R2 605
11 TraesCS7D01G224700 chr3D 612302967 612305068 2101 False 1685.000000 1685 81.602000 1617 3750 1 chr3D.!!$F1 2133
12 TraesCS7D01G224700 chr2B 611015223 611017010 1787 True 1666.000000 1666 83.916000 1636 3391 1 chr2B.!!$R1 1755
13 TraesCS7D01G224700 chr2B 196361605 196362976 1371 False 1310.000000 1310 84.271000 1635 2989 1 chr2B.!!$F1 1354
14 TraesCS7D01G224700 chr5D 411897535 411899235 1700 False 1609.000000 1609 83.984000 1923 3614 1 chr5D.!!$F1 1691
15 TraesCS7D01G224700 chr2A 757810719 757812472 1753 True 1410.000000 1410 81.582000 1872 3600 1 chr2A.!!$R4 1728
16 TraesCS7D01G224700 chr2A 662912181 662913330 1149 True 1334.000000 1334 87.672000 2139 3290 1 chr2A.!!$R3 1151
17 TraesCS7D01G224700 chr2A 163468981 163470049 1068 True 957.000000 957 83.303000 1635 2688 1 chr2A.!!$R1 1053
18 TraesCS7D01G224700 chr6A 116941397 116943144 1747 False 1321.000000 1321 80.771000 1974 3720 1 chr6A.!!$F1 1746
19 TraesCS7D01G224700 chr1D 327112123 327112731 608 False 1088.000000 1088 98.854000 6989 7599 1 chr1D.!!$F2 610
20 TraesCS7D01G224700 chr1D 468425276 468425881 605 False 1081.000000 1081 98.847000 6993 7599 1 chr1D.!!$F5 606
21 TraesCS7D01G224700 chr6D 301806859 301807468 609 False 1086.000000 1086 98.852000 6991 7599 1 chr6D.!!$F1 608
22 TraesCS7D01G224700 chr6D 473252183 473252787 604 False 1081.000000 1081 98.847000 6993 7599 1 chr6D.!!$F3 606
23 TraesCS7D01G224700 chr4D 58930452 58931058 606 False 1086.000000 1086 99.012000 6994 7599 1 chr4D.!!$F1 605
24 TraesCS7D01G224700 chr4D 368700383 368701193 810 False 736.000000 736 83.088000 2977 3789 1 chr4D.!!$F2 812
25 TraesCS7D01G224700 chr5A 88671520 88672300 780 False 737.000000 737 84.383000 1729 2489 1 chr5A.!!$F1 760
26 TraesCS7D01G224700 chrUn 135306379 135307086 707 False 507.000000 507 80.387000 1637 2328 1 chrUn.!!$F1 691
27 TraesCS7D01G224700 chrUn 155972412 155973119 707 True 507.000000 507 80.387000 1637 2328 1 chrUn.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1005 0.032217 CCCCTCTCTCTCTTCCAGCT 60.032 60.000 0.00 0.00 0.00 4.24 F
1611 1970 0.113580 TTTAGGACAACCCCAAGGCC 59.886 55.000 0.00 0.00 36.11 5.19 F
1722 2092 0.904394 AATGGGCCGGCACATTTTCT 60.904 50.000 43.93 27.68 46.73 2.52 F
2089 2503 0.941463 CGATTTCATCCTCCCGCTCG 60.941 60.000 0.00 0.00 0.00 5.03 F
2101 2517 0.962489 CCCGCTCGTCCTCTATGATT 59.038 55.000 0.00 0.00 0.00 2.57 F
3116 3604 1.067846 CAAACTCCTCATCGTCCGACA 60.068 52.381 0.00 0.00 0.00 4.35 F
3208 3700 1.263217 GCGAAACATCGAACACCTTGT 59.737 47.619 1.91 0.00 34.64 3.16 F
4483 8310 1.382420 CAGAGAGGGAGGTGGAGGG 60.382 68.421 0.00 0.00 0.00 4.30 F
5171 8999 1.745087 AGGCACAAATGATGCTTACCG 59.255 47.619 0.00 0.00 42.93 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 2403 0.459489 GTTTGCACAGCTCACCCAAA 59.541 50.000 0.00 0.0 0.00 3.28 R
3208 3700 1.896660 GCTTCTTGAACCACGCCCA 60.897 57.895 0.00 0.0 0.00 5.36 R
3290 3783 2.254651 GGTGTTCTCGCTCGACGT 59.745 61.111 0.00 0.0 44.19 4.34 R
3927 4472 2.397597 ACATTGGAAATATGCACCCCC 58.602 47.619 0.00 0.0 0.00 5.40 R
4147 4711 3.323775 TGTGGGTCCTAAAAAGAGGAGT 58.676 45.455 0.00 0.0 46.54 3.85 R
4389 4957 0.744414 CAACTACATCACCCCCTGCG 60.744 60.000 0.00 0.0 0.00 5.18 R
4639 8466 2.101640 AAACAACCAAGGCCTCCAAT 57.898 45.000 5.23 0.0 0.00 3.16 R
5365 9193 1.291132 GTGCTTTATCCCTCTCGCAC 58.709 55.000 0.00 0.0 40.53 5.34 R
6810 10658 0.107897 AACACACTCACGCTGTTCCA 60.108 50.000 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.986889 TCACATATCAACAGTGTACAATGCTAT 59.013 33.333 22.40 15.01 34.94 2.97
30 31 8.066000 CACATATCAACAGTGTACAATGCTATG 58.934 37.037 22.40 21.76 0.00 2.23
51 52 1.904537 ACATGCTCACAGATCCACTCA 59.095 47.619 0.00 0.00 0.00 3.41
54 55 4.347292 ACATGCTCACAGATCCACTCATAT 59.653 41.667 0.00 0.00 0.00 1.78
63 64 2.936919 TCCACTCATATCACATGCCC 57.063 50.000 0.00 0.00 0.00 5.36
83 84 4.322349 GCCCACATATCTAGCTAGAACCAG 60.322 50.000 26.62 17.98 35.69 4.00
85 86 6.010850 CCCACATATCTAGCTAGAACCAGTA 58.989 44.000 26.62 14.53 35.69 2.74
92 93 4.969999 TCTAGCTAGAACCAGTAGAGAGGA 59.030 45.833 21.26 0.00 0.00 3.71
161 162 4.814294 AGGACACGAATCGCCGCC 62.814 66.667 1.15 1.01 0.00 6.13
182 183 2.264794 GTGTACCACCGGCTGGAG 59.735 66.667 21.41 11.03 43.95 3.86
190 191 2.510238 CCGGCTGGAGAAGAAGCG 60.510 66.667 5.28 0.00 40.46 4.68
193 194 1.807573 GGCTGGAGAAGAAGCGTCG 60.808 63.158 0.00 0.00 40.46 5.12
204 205 2.572284 AGCGTCGCTTACCTGGTC 59.428 61.111 15.47 0.00 33.89 4.02
211 212 1.647545 CGCTTACCTGGTCGTCGGTA 61.648 60.000 0.63 0.00 34.76 4.02
224 225 2.428569 CGGTATCGATCCGCGTGG 60.429 66.667 18.73 9.28 41.48 4.94
233 234 3.243053 TCCGCGTGGGAGGGAAAA 61.243 61.111 16.49 0.00 40.94 2.29
245 246 0.404426 AGGGAAAACTCGAAAGGGGG 59.596 55.000 0.00 0.00 34.16 5.40
246 247 0.402887 GGGAAAACTCGAAAGGGGGA 59.597 55.000 0.00 0.00 34.16 4.81
249 250 2.960384 GGAAAACTCGAAAGGGGGAAAA 59.040 45.455 0.00 0.00 34.16 2.29
251 252 4.039973 GGAAAACTCGAAAGGGGGAAAAAT 59.960 41.667 0.00 0.00 34.16 1.82
252 253 5.244402 GGAAAACTCGAAAGGGGGAAAAATA 59.756 40.000 0.00 0.00 34.16 1.40
253 254 5.977489 AAACTCGAAAGGGGGAAAAATAG 57.023 39.130 0.00 0.00 34.16 1.73
254 255 4.652679 ACTCGAAAGGGGGAAAAATAGT 57.347 40.909 0.00 0.00 34.16 2.12
255 256 4.332828 ACTCGAAAGGGGGAAAAATAGTG 58.667 43.478 0.00 0.00 34.16 2.74
256 257 3.692690 TCGAAAGGGGGAAAAATAGTGG 58.307 45.455 0.00 0.00 0.00 4.00
257 258 2.165641 CGAAAGGGGGAAAAATAGTGGC 59.834 50.000 0.00 0.00 0.00 5.01
281 282 3.783362 TTTGGGCGGTGAGGTGTGG 62.783 63.158 0.00 0.00 0.00 4.17
295 296 2.181419 AGGTGTGGGTGGCTATATAGGA 59.819 50.000 11.72 0.00 0.00 2.94
297 298 2.029290 GTGTGGGTGGCTATATAGGACG 60.029 54.545 11.72 0.00 0.00 4.79
306 307 3.693085 GGCTATATAGGACGACCGATTCA 59.307 47.826 11.72 0.00 41.83 2.57
307 308 4.157289 GGCTATATAGGACGACCGATTCAA 59.843 45.833 11.72 0.00 41.83 2.69
309 310 2.486951 ATAGGACGACCGATTCAACG 57.513 50.000 0.00 0.00 41.83 4.10
322 323 3.181479 CGATTCAACGGAAGATGACCCTA 60.181 47.826 0.00 0.00 42.87 3.53
330 331 3.553096 CGGAAGATGACCCTAATTCCTCG 60.553 52.174 0.00 0.00 37.80 4.63
335 336 2.306255 GACCCTAATTCCTCGCGCCA 62.306 60.000 0.00 0.00 0.00 5.69
336 337 1.071471 CCCTAATTCCTCGCGCCAT 59.929 57.895 0.00 0.00 0.00 4.40
337 338 0.951040 CCCTAATTCCTCGCGCCATC 60.951 60.000 0.00 0.00 0.00 3.51
341 342 2.325583 AATTCCTCGCGCCATCTTTA 57.674 45.000 0.00 0.00 0.00 1.85
342 343 2.550830 ATTCCTCGCGCCATCTTTAT 57.449 45.000 0.00 0.00 0.00 1.40
358 390 2.148916 TTATGGTCGCATAAGCTCGG 57.851 50.000 0.00 0.00 39.10 4.63
383 415 0.817654 CGTACTCCTCCACTGCATCA 59.182 55.000 0.00 0.00 0.00 3.07
384 416 1.410517 CGTACTCCTCCACTGCATCAT 59.589 52.381 0.00 0.00 0.00 2.45
385 417 2.800985 CGTACTCCTCCACTGCATCATG 60.801 54.545 0.00 0.00 0.00 3.07
386 418 1.283347 ACTCCTCCACTGCATCATGT 58.717 50.000 0.00 0.00 0.00 3.21
387 419 1.065636 ACTCCTCCACTGCATCATGTG 60.066 52.381 0.00 0.00 0.00 3.21
389 421 1.208776 TCCTCCACTGCATCATGTGAG 59.791 52.381 5.44 5.29 36.38 3.51
390 422 1.015109 CTCCACTGCATCATGTGAGC 58.985 55.000 5.44 0.00 36.38 4.26
393 425 0.733150 CACTGCATCATGTGAGCCTG 59.267 55.000 0.00 0.00 36.38 4.85
402 434 0.616964 ATGTGAGCCTGGCTGAGAGA 60.617 55.000 28.82 8.61 39.88 3.10
413 455 4.272018 CCTGGCTGAGAGAAAACATATTCG 59.728 45.833 0.00 0.00 34.46 3.34
424 466 6.040878 AGAAAACATATTCGACCGTTCCTAG 58.959 40.000 0.00 0.00 34.46 3.02
426 468 2.957006 ACATATTCGACCGTTCCTAGCT 59.043 45.455 0.00 0.00 0.00 3.32
428 470 0.460311 ATTCGACCGTTCCTAGCTGG 59.540 55.000 0.00 0.00 37.10 4.85
429 471 0.896940 TTCGACCGTTCCTAGCTGGT 60.897 55.000 0.00 0.00 37.44 4.00
433 475 0.251653 ACCGTTCCTAGCTGGTCTGA 60.252 55.000 0.00 0.00 37.07 3.27
437 479 1.205893 GTTCCTAGCTGGTCTGACTGG 59.794 57.143 7.85 2.33 37.07 4.00
438 480 0.324738 TCCTAGCTGGTCTGACTGGG 60.325 60.000 7.85 0.00 37.07 4.45
440 482 0.616111 CTAGCTGGTCTGACTGGGGT 60.616 60.000 7.85 6.47 0.00 4.95
441 483 0.904865 TAGCTGGTCTGACTGGGGTG 60.905 60.000 7.85 0.00 0.00 4.61
442 484 2.520536 GCTGGTCTGACTGGGGTGT 61.521 63.158 7.85 0.00 0.00 4.16
443 485 2.056906 GCTGGTCTGACTGGGGTGTT 62.057 60.000 7.85 0.00 0.00 3.32
444 486 0.474184 CTGGTCTGACTGGGGTGTTT 59.526 55.000 7.85 0.00 0.00 2.83
445 487 0.923358 TGGTCTGACTGGGGTGTTTT 59.077 50.000 7.85 0.00 0.00 2.43
446 488 2.105821 CTGGTCTGACTGGGGTGTTTTA 59.894 50.000 7.85 0.00 0.00 1.52
447 489 2.510382 TGGTCTGACTGGGGTGTTTTAA 59.490 45.455 7.85 0.00 0.00 1.52
448 490 3.146847 GGTCTGACTGGGGTGTTTTAAG 58.853 50.000 7.85 0.00 0.00 1.85
449 491 3.146847 GTCTGACTGGGGTGTTTTAAGG 58.853 50.000 0.00 0.00 0.00 2.69
450 492 1.886542 CTGACTGGGGTGTTTTAAGGC 59.113 52.381 0.00 0.00 0.00 4.35
451 493 1.254026 GACTGGGGTGTTTTAAGGCC 58.746 55.000 0.00 0.00 0.00 5.19
452 494 0.538746 ACTGGGGTGTTTTAAGGCCG 60.539 55.000 0.00 0.00 0.00 6.13
453 495 0.538746 CTGGGGTGTTTTAAGGCCGT 60.539 55.000 0.00 0.00 0.00 5.68
454 496 0.824182 TGGGGTGTTTTAAGGCCGTG 60.824 55.000 0.00 0.00 0.00 4.94
455 497 1.287815 GGGTGTTTTAAGGCCGTGC 59.712 57.895 0.00 0.00 0.00 5.34
456 498 1.176619 GGGTGTTTTAAGGCCGTGCT 61.177 55.000 0.00 0.00 0.00 4.40
457 499 1.525941 GGTGTTTTAAGGCCGTGCTA 58.474 50.000 0.00 0.00 0.00 3.49
461 503 1.743394 GTTTTAAGGCCGTGCTATGCT 59.257 47.619 0.00 0.00 0.00 3.79
463 505 0.539518 TTAAGGCCGTGCTATGCTGA 59.460 50.000 0.00 0.00 0.00 4.26
470 512 2.009051 CCGTGCTATGCTGATCAAACA 58.991 47.619 0.00 0.00 0.00 2.83
480 522 5.050644 TGCTGATCAAACAGTAAATGCAG 57.949 39.130 0.00 0.00 39.73 4.41
481 523 4.761227 TGCTGATCAAACAGTAAATGCAGA 59.239 37.500 0.00 0.00 39.73 4.26
485 527 7.364522 TGATCAAACAGTAAATGCAGACTAC 57.635 36.000 0.00 0.00 0.00 2.73
492 534 6.237901 ACAGTAAATGCAGACTACCAAATGA 58.762 36.000 0.00 0.00 0.00 2.57
515 557 0.180642 TTTTGCACCACACGGACCTA 59.819 50.000 0.00 0.00 35.59 3.08
516 558 0.180642 TTTGCACCACACGGACCTAA 59.819 50.000 0.00 0.00 35.59 2.69
523 565 1.208535 CCACACGGACCTAATTAGCCA 59.791 52.381 6.99 0.00 0.00 4.75
524 566 2.355310 CCACACGGACCTAATTAGCCAA 60.355 50.000 6.99 0.00 0.00 4.52
525 567 2.676342 CACACGGACCTAATTAGCCAAC 59.324 50.000 6.99 0.00 0.00 3.77
526 568 2.570302 ACACGGACCTAATTAGCCAACT 59.430 45.455 6.99 0.00 0.00 3.16
527 569 3.770933 ACACGGACCTAATTAGCCAACTA 59.229 43.478 6.99 0.00 0.00 2.24
528 570 4.223477 ACACGGACCTAATTAGCCAACTAA 59.777 41.667 6.99 0.00 42.47 2.24
529 571 5.180271 CACGGACCTAATTAGCCAACTAAA 58.820 41.667 6.99 0.00 41.62 1.85
530 572 5.064325 CACGGACCTAATTAGCCAACTAAAC 59.936 44.000 6.99 0.00 41.62 2.01
531 573 5.180271 CGGACCTAATTAGCCAACTAAACA 58.820 41.667 6.99 0.00 41.62 2.83
532 574 5.644636 CGGACCTAATTAGCCAACTAAACAA 59.355 40.000 6.99 0.00 41.62 2.83
533 575 6.149807 CGGACCTAATTAGCCAACTAAACAAA 59.850 38.462 6.99 0.00 41.62 2.83
534 576 7.535997 GGACCTAATTAGCCAACTAAACAAAG 58.464 38.462 6.99 0.00 41.62 2.77
535 577 6.920817 ACCTAATTAGCCAACTAAACAAAGC 58.079 36.000 6.99 0.00 41.62 3.51
536 578 6.492087 ACCTAATTAGCCAACTAAACAAAGCA 59.508 34.615 6.99 0.00 41.62 3.91
537 579 7.178451 ACCTAATTAGCCAACTAAACAAAGCAT 59.822 33.333 6.99 0.00 41.62 3.79
538 580 8.682710 CCTAATTAGCCAACTAAACAAAGCATA 58.317 33.333 6.99 0.00 41.62 3.14
540 582 8.931385 AATTAGCCAACTAAACAAAGCATATG 57.069 30.769 0.00 0.00 41.62 1.78
541 583 7.695480 TTAGCCAACTAAACAAAGCATATGA 57.305 32.000 6.97 0.00 35.41 2.15
542 584 6.780457 AGCCAACTAAACAAAGCATATGAT 57.220 33.333 6.97 0.00 0.00 2.45
543 585 7.174107 AGCCAACTAAACAAAGCATATGATT 57.826 32.000 6.97 2.93 0.00 2.57
544 586 7.260603 AGCCAACTAAACAAAGCATATGATTC 58.739 34.615 6.68 0.00 0.00 2.52
545 587 6.197096 GCCAACTAAACAAAGCATATGATTCG 59.803 38.462 6.68 0.00 0.00 3.34
546 588 7.471721 CCAACTAAACAAAGCATATGATTCGA 58.528 34.615 6.68 0.00 0.00 3.71
547 589 8.131100 CCAACTAAACAAAGCATATGATTCGAT 58.869 33.333 6.68 0.00 0.00 3.59
548 590 8.950961 CAACTAAACAAAGCATATGATTCGATG 58.049 33.333 6.68 4.57 0.00 3.84
549 591 7.642669 ACTAAACAAAGCATATGATTCGATGG 58.357 34.615 6.68 0.00 0.00 3.51
550 592 6.455360 AAACAAAGCATATGATTCGATGGT 57.545 33.333 6.68 0.00 35.35 3.55
551 593 5.679734 ACAAAGCATATGATTCGATGGTC 57.320 39.130 6.68 0.00 32.78 4.02
552 594 4.212004 ACAAAGCATATGATTCGATGGTCG 59.788 41.667 6.68 0.00 42.10 4.79
563 605 3.861797 ATGGTCGACATCCCGCCC 61.862 66.667 18.91 0.00 33.53 6.13
569 611 3.508840 GACATCCCGCCCGCTTTG 61.509 66.667 0.00 0.00 0.00 2.77
570 612 4.344865 ACATCCCGCCCGCTTTGT 62.345 61.111 0.00 0.00 0.00 2.83
571 613 3.508840 CATCCCGCCCGCTTTGTC 61.509 66.667 0.00 0.00 0.00 3.18
572 614 4.796495 ATCCCGCCCGCTTTGTCC 62.796 66.667 0.00 0.00 0.00 4.02
575 617 3.737172 CCGCCCGCTTTGTCCTTG 61.737 66.667 0.00 0.00 0.00 3.61
576 618 3.737172 CGCCCGCTTTGTCCTTGG 61.737 66.667 0.00 0.00 0.00 3.61
577 619 2.282180 GCCCGCTTTGTCCTTGGA 60.282 61.111 0.00 0.00 0.00 3.53
578 620 2.626780 GCCCGCTTTGTCCTTGGAC 61.627 63.158 12.54 12.54 0.00 4.02
579 621 1.228124 CCCGCTTTGTCCTTGGACA 60.228 57.895 17.57 17.57 0.00 4.02
580 622 0.609131 CCCGCTTTGTCCTTGGACAT 60.609 55.000 21.39 0.00 34.76 3.06
581 623 0.523072 CCGCTTTGTCCTTGGACATG 59.477 55.000 21.39 17.44 34.76 3.21
582 624 1.238439 CGCTTTGTCCTTGGACATGT 58.762 50.000 21.39 0.00 34.76 3.21
583 625 1.608590 CGCTTTGTCCTTGGACATGTT 59.391 47.619 21.39 0.00 34.76 2.71
584 626 2.350772 CGCTTTGTCCTTGGACATGTTC 60.351 50.000 21.39 0.00 34.76 3.18
585 627 2.350772 GCTTTGTCCTTGGACATGTTCG 60.351 50.000 21.39 10.35 34.76 3.95
586 628 1.890876 TTGTCCTTGGACATGTTCGG 58.109 50.000 21.39 0.00 34.76 4.30
587 629 1.052617 TGTCCTTGGACATGTTCGGA 58.947 50.000 17.57 0.00 0.00 4.55
588 630 1.001974 TGTCCTTGGACATGTTCGGAG 59.998 52.381 17.57 0.00 0.00 4.63
589 631 1.275291 GTCCTTGGACATGTTCGGAGA 59.725 52.381 14.34 0.00 0.00 3.71
590 632 2.093447 GTCCTTGGACATGTTCGGAGAT 60.093 50.000 14.34 0.00 35.04 2.75
591 633 2.093500 TCCTTGGACATGTTCGGAGATG 60.093 50.000 0.00 0.00 35.04 2.90
592 634 2.355108 CCTTGGACATGTTCGGAGATGT 60.355 50.000 6.11 6.11 41.95 3.06
598 640 3.338249 ACATGTTCGGAGATGTCTTTGG 58.662 45.455 0.00 0.00 34.99 3.28
599 641 3.007940 ACATGTTCGGAGATGTCTTTGGA 59.992 43.478 0.00 0.00 34.99 3.53
600 642 3.981071 TGTTCGGAGATGTCTTTGGAT 57.019 42.857 0.00 0.00 35.04 3.41
601 643 5.104941 ACATGTTCGGAGATGTCTTTGGATA 60.105 40.000 0.00 0.00 34.99 2.59
602 644 5.614324 TGTTCGGAGATGTCTTTGGATAT 57.386 39.130 0.00 0.00 35.04 1.63
603 645 5.989477 TGTTCGGAGATGTCTTTGGATATT 58.011 37.500 0.00 0.00 35.04 1.28
604 646 6.414732 TGTTCGGAGATGTCTTTGGATATTT 58.585 36.000 0.00 0.00 35.04 1.40
605 647 6.316140 TGTTCGGAGATGTCTTTGGATATTTG 59.684 38.462 0.00 0.00 35.04 2.32
606 648 5.368145 TCGGAGATGTCTTTGGATATTTGG 58.632 41.667 0.00 0.00 0.00 3.28
607 649 5.104527 TCGGAGATGTCTTTGGATATTTGGT 60.105 40.000 0.00 0.00 0.00 3.67
608 650 5.008019 CGGAGATGTCTTTGGATATTTGGTG 59.992 44.000 0.00 0.00 0.00 4.17
609 651 5.221126 GGAGATGTCTTTGGATATTTGGTGC 60.221 44.000 0.00 0.00 0.00 5.01
610 652 5.263599 AGATGTCTTTGGATATTTGGTGCA 58.736 37.500 0.00 0.00 0.00 4.57
611 653 5.359009 AGATGTCTTTGGATATTTGGTGCAG 59.641 40.000 0.00 0.00 0.00 4.41
612 654 4.406456 TGTCTTTGGATATTTGGTGCAGT 58.594 39.130 0.00 0.00 0.00 4.40
613 655 4.458989 TGTCTTTGGATATTTGGTGCAGTC 59.541 41.667 0.00 0.00 0.00 3.51
614 656 3.689161 TCTTTGGATATTTGGTGCAGTCG 59.311 43.478 0.00 0.00 0.00 4.18
615 657 2.779755 TGGATATTTGGTGCAGTCGT 57.220 45.000 0.00 0.00 0.00 4.34
616 658 3.066291 TGGATATTTGGTGCAGTCGTT 57.934 42.857 0.00 0.00 0.00 3.85
617 659 3.417101 TGGATATTTGGTGCAGTCGTTT 58.583 40.909 0.00 0.00 0.00 3.60
618 660 3.190327 TGGATATTTGGTGCAGTCGTTTG 59.810 43.478 0.00 0.00 0.00 2.93
619 661 3.438781 GGATATTTGGTGCAGTCGTTTGA 59.561 43.478 0.00 0.00 0.00 2.69
620 662 4.096382 GGATATTTGGTGCAGTCGTTTGAT 59.904 41.667 0.00 0.00 0.00 2.57
621 663 2.772568 TTTGGTGCAGTCGTTTGATG 57.227 45.000 0.00 0.00 0.00 3.07
622 664 1.960417 TTGGTGCAGTCGTTTGATGA 58.040 45.000 0.00 0.00 0.00 2.92
623 665 2.183478 TGGTGCAGTCGTTTGATGAT 57.817 45.000 0.00 0.00 0.00 2.45
624 666 2.076100 TGGTGCAGTCGTTTGATGATC 58.924 47.619 0.00 0.00 0.00 2.92
625 667 2.076100 GGTGCAGTCGTTTGATGATCA 58.924 47.619 0.00 0.00 0.00 2.92
626 668 2.159653 GGTGCAGTCGTTTGATGATCAC 60.160 50.000 0.00 0.00 0.00 3.06
627 669 2.076100 TGCAGTCGTTTGATGATCACC 58.924 47.619 0.00 0.00 0.00 4.02
628 670 1.061131 GCAGTCGTTTGATGATCACCG 59.939 52.381 0.00 0.71 0.00 4.94
629 671 2.337583 CAGTCGTTTGATGATCACCGT 58.662 47.619 0.00 0.00 0.00 4.83
630 672 2.736721 CAGTCGTTTGATGATCACCGTT 59.263 45.455 0.00 2.29 0.00 4.44
631 673 2.736721 AGTCGTTTGATGATCACCGTTG 59.263 45.455 0.00 0.00 0.00 4.10
632 674 2.073056 TCGTTTGATGATCACCGTTGG 58.927 47.619 0.00 0.00 0.00 3.77
633 675 2.073056 CGTTTGATGATCACCGTTGGA 58.927 47.619 0.00 0.00 0.00 3.53
634 676 2.094258 CGTTTGATGATCACCGTTGGAG 59.906 50.000 0.00 0.00 0.00 3.86
635 677 3.074412 GTTTGATGATCACCGTTGGAGT 58.926 45.455 0.00 0.00 0.00 3.85
636 678 3.417069 TTGATGATCACCGTTGGAGTT 57.583 42.857 0.00 0.00 0.00 3.01
637 679 2.698803 TGATGATCACCGTTGGAGTTG 58.301 47.619 0.00 0.00 0.00 3.16
645 687 0.673644 CCGTTGGAGTTGCCCTAGTG 60.674 60.000 0.00 0.00 34.97 2.74
661 703 1.039856 AGTGTCACCAATTTGCACCC 58.960 50.000 0.00 0.00 0.00 4.61
665 707 1.544246 GTCACCAATTTGCACCCCTAC 59.456 52.381 0.00 0.00 0.00 3.18
668 711 1.133325 ACCAATTTGCACCCCTACACA 60.133 47.619 0.00 0.00 0.00 3.72
681 724 1.689273 CCTACACAGTAGGATCCCTGC 59.311 57.143 16.37 4.15 36.85 4.85
827 870 3.726517 CCACGCCACCTCGCTTTG 61.727 66.667 0.00 0.00 0.00 2.77
828 871 2.664851 CACGCCACCTCGCTTTGA 60.665 61.111 0.00 0.00 0.00 2.69
829 872 2.357517 ACGCCACCTCGCTTTGAG 60.358 61.111 0.00 0.00 44.83 3.02
830 873 3.793144 CGCCACCTCGCTTTGAGC 61.793 66.667 0.00 0.00 43.82 4.26
884 927 0.317479 CCCAACCGATCCGATCTACC 59.683 60.000 6.81 0.00 0.00 3.18
956 999 1.305718 AAGCGCCCCTCTCTCTCTT 60.306 57.895 2.29 0.00 0.00 2.85
957 1000 1.326951 AAGCGCCCCTCTCTCTCTTC 61.327 60.000 2.29 0.00 0.00 2.87
958 1001 2.791868 GCGCCCCTCTCTCTCTTCC 61.792 68.421 0.00 0.00 0.00 3.46
959 1002 1.380515 CGCCCCTCTCTCTCTTCCA 60.381 63.158 0.00 0.00 0.00 3.53
960 1003 1.391157 CGCCCCTCTCTCTCTTCCAG 61.391 65.000 0.00 0.00 0.00 3.86
961 1004 1.685355 GCCCCTCTCTCTCTTCCAGC 61.685 65.000 0.00 0.00 0.00 4.85
962 1005 0.032217 CCCCTCTCTCTCTTCCAGCT 60.032 60.000 0.00 0.00 0.00 4.24
963 1006 1.402787 CCCTCTCTCTCTTCCAGCTC 58.597 60.000 0.00 0.00 0.00 4.09
975 1018 1.306482 CCAGCTCCTCCTCCTCCAA 60.306 63.158 0.00 0.00 0.00 3.53
1042 1085 3.591835 GCGGCGAGGAGAGGAGAG 61.592 72.222 12.98 0.00 0.00 3.20
1043 1086 2.904866 CGGCGAGGAGAGGAGAGG 60.905 72.222 0.00 0.00 0.00 3.69
1044 1087 2.598467 GGCGAGGAGAGGAGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
1045 1088 1.826487 GGCGAGGAGAGGAGAGGAC 60.826 68.421 0.00 0.00 0.00 3.85
1321 1364 2.464865 ACGTATGCGATCTTCTGCTTC 58.535 47.619 11.07 0.00 42.00 3.86
1322 1365 2.099921 ACGTATGCGATCTTCTGCTTCT 59.900 45.455 11.07 0.00 42.00 2.85
1323 1366 2.470628 CGTATGCGATCTTCTGCTTCTG 59.529 50.000 0.00 0.00 41.33 3.02
1324 1367 1.297664 ATGCGATCTTCTGCTTCTGC 58.702 50.000 0.00 0.00 40.20 4.26
1325 1368 0.248565 TGCGATCTTCTGCTTCTGCT 59.751 50.000 0.00 0.00 40.48 4.24
1326 1369 1.338484 TGCGATCTTCTGCTTCTGCTT 60.338 47.619 0.00 0.00 40.48 3.91
1477 1521 2.729882 ACGATGTAGACTTTCGCAACAC 59.270 45.455 0.00 0.00 0.00 3.32
1598 1957 6.103997 CGTTTAGTGTTCCAGCTATTTAGGA 58.896 40.000 0.00 0.00 0.00 2.94
1603 1962 4.395231 GTGTTCCAGCTATTTAGGACAACC 59.605 45.833 0.00 0.00 0.00 3.77
1608 1967 3.947834 CAGCTATTTAGGACAACCCCAAG 59.052 47.826 0.00 0.00 36.73 3.61
1611 1970 0.113580 TTTAGGACAACCCCAAGGCC 59.886 55.000 0.00 0.00 36.11 5.19
1614 1973 4.696805 GACAACCCCAAGGCCCCC 62.697 72.222 0.00 0.00 36.11 5.40
1653 2020 1.461559 TTTTTGTCCGTTTGGGTCGT 58.538 45.000 0.00 0.00 37.00 4.34
1722 2092 0.904394 AATGGGCCGGCACATTTTCT 60.904 50.000 43.93 27.68 46.73 2.52
1994 2403 6.987992 GCCCAATTACACATTTCATGATGAAT 59.012 34.615 8.90 0.00 36.11 2.57
2003 2412 6.533723 CACATTTCATGATGAATTTGGGTGAG 59.466 38.462 8.90 0.00 36.11 3.51
2089 2503 0.941463 CGATTTCATCCTCCCGCTCG 60.941 60.000 0.00 0.00 0.00 5.03
2101 2517 0.962489 CCCGCTCGTCCTCTATGATT 59.038 55.000 0.00 0.00 0.00 2.57
2646 3124 1.450312 AGGTTGTATCTGCCGCAGC 60.450 57.895 15.98 2.50 40.48 5.25
2800 3278 2.477845 TCTGAATAGCTGCAGTGCAA 57.522 45.000 20.22 4.63 38.41 4.08
2824 3302 3.526931 TGATAAGAGGAGAAGCCAACG 57.473 47.619 0.00 0.00 40.02 4.10
3019 3507 1.226660 GTTGCGATTCAATGCCGGG 60.227 57.895 2.18 0.00 36.99 5.73
3116 3604 1.067846 CAAACTCCTCATCGTCCGACA 60.068 52.381 0.00 0.00 0.00 4.35
3208 3700 1.263217 GCGAAACATCGAACACCTTGT 59.737 47.619 1.91 0.00 34.64 3.16
3219 3711 2.203294 ACCTTGTGGGCGTGGTTC 60.203 61.111 0.00 0.00 39.10 3.62
3284 3777 4.082523 TAGGCCTGTCAGCGTGGC 62.083 66.667 17.99 0.00 45.42 5.01
3881 4426 8.657712 TCCTCTGCTTATACAGTCTACATAGTA 58.342 37.037 0.00 0.00 38.84 1.82
3927 4472 7.133891 AGTTTAGTTGGATCTGTGAATTTCG 57.866 36.000 0.00 0.00 0.00 3.46
4147 4711 8.617809 GTTGAGCGGGAGATATTTTATTTGTAA 58.382 33.333 0.00 0.00 0.00 2.41
4387 4955 2.815647 GCGGAAGGGCGACTGAAG 60.816 66.667 0.00 0.00 0.00 3.02
4389 4957 1.446272 CGGAAGGGCGACTGAAGTC 60.446 63.158 0.08 0.08 41.47 3.01
4424 4992 7.665145 TGATGTAGTTGTGGAGATTTTGAATCA 59.335 33.333 3.76 0.00 0.00 2.57
4483 8310 1.382420 CAGAGAGGGAGGTGGAGGG 60.382 68.421 0.00 0.00 0.00 4.30
4638 8465 8.321353 TGATAGACACTACAGTTGGATTGAATT 58.679 33.333 0.00 0.00 0.00 2.17
4639 8466 9.817809 GATAGACACTACAGTTGGATTGAATTA 57.182 33.333 0.00 0.00 0.00 1.40
4669 8496 5.221362 GGCCTTGGTTGTTTAGTTGTACATT 60.221 40.000 0.00 0.00 0.00 2.71
4671 8498 6.212955 CCTTGGTTGTTTAGTTGTACATTGG 58.787 40.000 0.00 0.00 0.00 3.16
4688 8515 7.936847 TGTACATTGGTGTCTTACTGAGATTTT 59.063 33.333 0.00 0.00 39.77 1.82
4699 8526 9.436957 GTCTTACTGAGATTTTTCAATAGGTCA 57.563 33.333 0.00 0.00 36.61 4.02
5171 8999 1.745087 AGGCACAAATGATGCTTACCG 59.255 47.619 0.00 0.00 42.93 4.02
5177 9005 3.119990 ACAAATGATGCTTACCGTTTCCG 60.120 43.478 0.00 0.00 0.00 4.30
5204 9032 7.337938 TGTTCTATCCTGCAAGATTGACATTA 58.662 34.615 8.68 0.00 34.07 1.90
5205 9033 7.828717 TGTTCTATCCTGCAAGATTGACATTAA 59.171 33.333 8.68 0.00 34.07 1.40
5242 9070 9.552114 CAGACATTCACTTTCTTTTAGCATAAG 57.448 33.333 0.00 0.00 0.00 1.73
5632 9461 6.412362 ACTGGCTGATGGTAACTTCTATAG 57.588 41.667 0.00 0.00 41.19 1.31
5866 9701 6.018433 AGGCTGGAATTATGTTTACCTGAT 57.982 37.500 0.00 0.00 0.00 2.90
5933 9768 5.625251 CACCGATTTCTTCTGATCAGTTTG 58.375 41.667 21.92 12.97 0.00 2.93
5935 9770 4.394300 CCGATTTCTTCTGATCAGTTTGCT 59.606 41.667 21.92 4.61 0.00 3.91
5947 9782 6.902341 TGATCAGTTTGCTACTCATTGAAAC 58.098 36.000 0.00 0.00 33.85 2.78
6053 9888 7.853524 TGCATTTTGAAAATGAAATCACACTC 58.146 30.769 29.02 11.30 0.00 3.51
6118 9953 6.403964 GGTGGGCTAAAGAAAGTTATTTACGG 60.404 42.308 0.00 0.00 0.00 4.02
6221 10057 5.534278 GGATTCATTCCCTTCTCTTGGATTC 59.466 44.000 0.00 0.00 38.75 2.52
6241 10077 0.601841 GGTTTTCCGAAGCCGTCTGA 60.602 55.000 0.00 0.00 0.00 3.27
6266 10102 5.132648 TGATGTCCAGGTGCCTATCTTTAAT 59.867 40.000 0.00 0.00 0.00 1.40
6338 10174 3.443681 CGAGTAATTTCACATTTGGGGCT 59.556 43.478 0.00 0.00 0.00 5.19
6387 10223 1.065709 ACTTCGGTGTGGTCAACTTGT 60.066 47.619 0.00 0.00 0.00 3.16
6584 10420 1.535028 TCTGCAGTTTAACATGCACGG 59.465 47.619 14.67 9.04 46.97 4.94
6588 10424 0.887387 AGTTTAACATGCACGGGCGT 60.887 50.000 4.58 0.00 45.35 5.68
6651 10487 9.431887 TGAAATTACGCTAGTAGAAAGTTTGAT 57.568 29.630 0.00 0.00 33.87 2.57
6723 10567 5.905733 CAGCTCAAAATCTATACATGTTGCG 59.094 40.000 2.30 0.00 0.00 4.85
6738 10582 7.333288 ACATGTTGCGCTAAACTTATTTTTC 57.667 32.000 9.73 0.00 0.00 2.29
6758 10602 0.234106 GATCGCACGGAGAATGCATG 59.766 55.000 0.00 0.00 43.57 4.06
6779 10625 1.017177 ATGTATTTCGTGCACGCCGT 61.017 50.000 33.63 21.99 39.60 5.68
6785 10631 0.170784 TTCGTGCACGCCGTTATCTA 59.829 50.000 33.63 11.01 39.60 1.98
6832 10680 2.035617 AACAGCGTGAGTGTGTTGCG 62.036 55.000 0.00 0.00 38.44 4.85
6848 10696 1.869774 TGCGGAGATTGGATGAATCG 58.130 50.000 0.00 0.00 44.72 3.34
6901 10829 0.527817 GACGCCGTACAGAGGATTGG 60.528 60.000 0.00 0.00 0.00 3.16
6902 10830 1.227263 CGCCGTACAGAGGATTGGG 60.227 63.158 0.00 0.00 0.00 4.12
6906 10834 1.134788 CCGTACAGAGGATTGGGTGTC 60.135 57.143 0.00 0.00 0.00 3.67
6958 12195 5.987347 GCCAGCAAGATAAACATAATGCAAT 59.013 36.000 0.00 0.00 36.30 3.56
6979 12216 3.680490 TGCATCCTACGGAATTTTGTGA 58.320 40.909 0.00 0.00 34.34 3.58
7031 12268 1.618861 CAGTTGGTAGTCTCGCTTCG 58.381 55.000 0.00 0.00 0.00 3.79
7278 12519 9.712305 TTTTCAACACTTTCCTAATGACAAAAA 57.288 25.926 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.904537 AGTGGATCTGTGAGCATGTCA 59.095 47.619 0.00 0.00 0.00 3.58
30 31 2.093816 TGAGTGGATCTGTGAGCATGTC 60.094 50.000 0.00 0.00 0.00 3.06
51 52 5.427806 AGCTAGATATGTGGGCATGTGATAT 59.572 40.000 0.00 0.00 36.58 1.63
54 55 2.974794 AGCTAGATATGTGGGCATGTGA 59.025 45.455 0.00 0.00 36.58 3.58
63 64 7.880713 TCTCTACTGGTTCTAGCTAGATATGTG 59.119 40.741 23.81 14.77 31.40 3.21
83 84 3.478857 TCGATCACTCCTCCTCTCTAC 57.521 52.381 0.00 0.00 0.00 2.59
85 86 2.241176 AGTTCGATCACTCCTCCTCTCT 59.759 50.000 0.00 0.00 0.00 3.10
124 125 2.226912 CTCCTCTTCTTCGACGTGTTCT 59.773 50.000 0.00 0.00 0.00 3.01
129 130 1.166989 GTCCTCCTCTTCTTCGACGT 58.833 55.000 0.00 0.00 0.00 4.34
173 174 2.510238 CGCTTCTTCTCCAGCCGG 60.510 66.667 0.00 0.00 31.82 6.13
177 178 0.389166 AAGCGACGCTTCTTCTCCAG 60.389 55.000 28.59 0.00 46.77 3.86
178 179 0.885879 TAAGCGACGCTTCTTCTCCA 59.114 50.000 36.18 16.16 46.77 3.86
180 181 1.135344 AGGTAAGCGACGCTTCTTCTC 60.135 52.381 36.18 21.11 46.77 2.87
182 183 0.992802 CAGGTAAGCGACGCTTCTTC 59.007 55.000 36.18 25.37 46.77 2.87
190 191 1.513586 CGACGACCAGGTAAGCGAC 60.514 63.158 6.19 0.00 0.00 5.19
193 194 0.743097 ATACCGACGACCAGGTAAGC 59.257 55.000 0.00 0.00 45.03 3.09
196 197 0.177836 TCGATACCGACGACCAGGTA 59.822 55.000 0.00 0.00 45.83 3.08
211 212 3.606662 CCTCCCACGCGGATCGAT 61.607 66.667 12.47 0.00 41.00 3.59
219 220 2.033194 CGAGTTTTCCCTCCCACGC 61.033 63.158 0.00 0.00 0.00 5.34
224 225 1.613520 CCCCTTTCGAGTTTTCCCTCC 60.614 57.143 0.00 0.00 0.00 4.30
231 232 5.243060 CACTATTTTTCCCCCTTTCGAGTTT 59.757 40.000 0.00 0.00 0.00 2.66
233 234 4.332828 CACTATTTTTCCCCCTTTCGAGT 58.667 43.478 0.00 0.00 0.00 4.18
245 246 3.366985 CCAAACTCCCGCCACTATTTTTC 60.367 47.826 0.00 0.00 0.00 2.29
246 247 2.560981 CCAAACTCCCGCCACTATTTTT 59.439 45.455 0.00 0.00 0.00 1.94
249 250 0.034477 CCCAAACTCCCGCCACTATT 60.034 55.000 0.00 0.00 0.00 1.73
251 252 3.074281 CCCAAACTCCCGCCACTA 58.926 61.111 0.00 0.00 0.00 2.74
252 253 4.660938 GCCCAAACTCCCGCCACT 62.661 66.667 0.00 0.00 0.00 4.00
257 258 4.323477 TCACCGCCCAAACTCCCG 62.323 66.667 0.00 0.00 0.00 5.14
281 282 1.471684 CGGTCGTCCTATATAGCCACC 59.528 57.143 4.04 6.03 0.00 4.61
306 307 3.780850 AGGAATTAGGGTCATCTTCCGTT 59.219 43.478 0.00 0.00 40.24 4.44
307 308 3.385115 AGGAATTAGGGTCATCTTCCGT 58.615 45.455 0.00 0.00 40.24 4.69
309 310 3.804063 GCGAGGAATTAGGGTCATCTTCC 60.804 52.174 0.00 0.00 36.45 3.46
311 312 2.224066 CGCGAGGAATTAGGGTCATCTT 60.224 50.000 0.00 0.00 0.00 2.40
314 315 0.249911 GCGCGAGGAATTAGGGTCAT 60.250 55.000 12.10 0.00 0.00 3.06
317 318 1.696097 ATGGCGCGAGGAATTAGGGT 61.696 55.000 12.10 0.00 0.00 4.34
322 323 2.325583 TAAAGATGGCGCGAGGAATT 57.674 45.000 12.10 0.00 0.00 2.17
335 336 3.990469 CGAGCTTATGCGACCATAAAGAT 59.010 43.478 0.00 0.00 41.88 2.40
336 337 3.381045 CGAGCTTATGCGACCATAAAGA 58.619 45.455 0.00 0.00 41.88 2.52
337 338 2.476619 CCGAGCTTATGCGACCATAAAG 59.523 50.000 0.00 0.00 41.88 1.85
341 342 1.595382 GCCGAGCTTATGCGACCAT 60.595 57.895 0.00 0.00 45.42 3.55
342 343 2.202878 GCCGAGCTTATGCGACCA 60.203 61.111 0.00 0.00 45.42 4.02
370 402 1.664873 CTCACATGATGCAGTGGAGG 58.335 55.000 0.00 0.00 36.43 4.30
371 403 1.015109 GCTCACATGATGCAGTGGAG 58.985 55.000 0.00 7.11 36.43 3.86
373 405 0.393944 AGGCTCACATGATGCAGTGG 60.394 55.000 0.00 0.00 36.43 4.00
383 415 0.616964 TCTCTCAGCCAGGCTCACAT 60.617 55.000 12.53 0.00 36.40 3.21
384 416 0.833409 TTCTCTCAGCCAGGCTCACA 60.833 55.000 12.53 0.00 36.40 3.58
385 417 0.322975 TTTCTCTCAGCCAGGCTCAC 59.677 55.000 12.53 0.00 36.40 3.51
386 418 1.059098 TTTTCTCTCAGCCAGGCTCA 58.941 50.000 12.53 0.00 36.40 4.26
387 419 1.271054 TGTTTTCTCTCAGCCAGGCTC 60.271 52.381 12.53 0.00 36.40 4.70
389 421 1.831580 ATGTTTTCTCTCAGCCAGGC 58.168 50.000 1.84 1.84 0.00 4.85
390 422 4.272018 CGAATATGTTTTCTCTCAGCCAGG 59.728 45.833 0.00 0.00 0.00 4.45
393 425 4.271291 GGTCGAATATGTTTTCTCTCAGCC 59.729 45.833 0.00 0.00 0.00 4.85
402 434 4.569564 GCTAGGAACGGTCGAATATGTTTT 59.430 41.667 0.00 0.00 0.00 2.43
413 455 0.173708 CAGACCAGCTAGGAACGGTC 59.826 60.000 10.01 10.01 46.85 4.79
424 466 2.056906 AACACCCCAGTCAGACCAGC 62.057 60.000 0.00 0.00 0.00 4.85
426 468 0.923358 AAAACACCCCAGTCAGACCA 59.077 50.000 0.00 0.00 0.00 4.02
428 470 3.146847 CCTTAAAACACCCCAGTCAGAC 58.853 50.000 0.00 0.00 0.00 3.51
429 471 2.488347 GCCTTAAAACACCCCAGTCAGA 60.488 50.000 0.00 0.00 0.00 3.27
433 475 0.538746 CGGCCTTAAAACACCCCAGT 60.539 55.000 0.00 0.00 0.00 4.00
437 479 1.176619 AGCACGGCCTTAAAACACCC 61.177 55.000 0.00 0.00 0.00 4.61
438 480 1.525941 TAGCACGGCCTTAAAACACC 58.474 50.000 0.00 0.00 0.00 4.16
440 482 1.470890 GCATAGCACGGCCTTAAAACA 59.529 47.619 0.00 0.00 0.00 2.83
441 483 1.743394 AGCATAGCACGGCCTTAAAAC 59.257 47.619 0.00 0.00 0.00 2.43
442 484 1.742831 CAGCATAGCACGGCCTTAAAA 59.257 47.619 0.00 0.00 0.00 1.52
443 485 1.065782 TCAGCATAGCACGGCCTTAAA 60.066 47.619 0.00 0.00 0.00 1.52
444 486 0.539518 TCAGCATAGCACGGCCTTAA 59.460 50.000 0.00 0.00 0.00 1.85
445 487 0.758734 ATCAGCATAGCACGGCCTTA 59.241 50.000 0.00 0.00 0.00 2.69
446 488 0.533755 GATCAGCATAGCACGGCCTT 60.534 55.000 0.00 0.00 0.00 4.35
447 489 1.070445 GATCAGCATAGCACGGCCT 59.930 57.895 0.00 0.00 0.00 5.19
448 490 0.815213 TTGATCAGCATAGCACGGCC 60.815 55.000 0.00 0.00 0.00 6.13
449 491 1.016627 TTTGATCAGCATAGCACGGC 58.983 50.000 0.00 0.00 0.00 5.68
450 492 2.009051 TGTTTGATCAGCATAGCACGG 58.991 47.619 0.00 0.00 0.00 4.94
451 493 2.674852 ACTGTTTGATCAGCATAGCACG 59.325 45.455 0.00 0.00 38.84 5.34
452 494 5.801350 TTACTGTTTGATCAGCATAGCAC 57.199 39.130 0.00 0.00 38.84 4.40
453 495 6.678655 GCATTTACTGTTTGATCAGCATAGCA 60.679 38.462 0.00 0.00 38.84 3.49
454 496 5.684626 GCATTTACTGTTTGATCAGCATAGC 59.315 40.000 0.00 0.00 38.84 2.97
455 497 6.788243 TGCATTTACTGTTTGATCAGCATAG 58.212 36.000 0.00 0.00 38.84 2.23
456 498 6.598850 TCTGCATTTACTGTTTGATCAGCATA 59.401 34.615 0.00 0.00 38.84 3.14
457 499 5.416639 TCTGCATTTACTGTTTGATCAGCAT 59.583 36.000 0.00 0.00 38.84 3.79
461 503 6.371548 GGTAGTCTGCATTTACTGTTTGATCA 59.628 38.462 0.00 0.00 0.00 2.92
463 505 6.237901 TGGTAGTCTGCATTTACTGTTTGAT 58.762 36.000 6.73 0.00 0.00 2.57
470 512 5.355350 GCTCATTTGGTAGTCTGCATTTACT 59.645 40.000 0.00 0.00 0.00 2.24
480 522 4.622740 GTGCAAAATGCTCATTTGGTAGTC 59.377 41.667 8.43 0.00 45.31 2.59
481 523 4.559153 GTGCAAAATGCTCATTTGGTAGT 58.441 39.130 8.43 0.00 45.31 2.73
485 527 2.481185 GTGGTGCAAAATGCTCATTTGG 59.519 45.455 8.43 6.93 45.31 3.28
492 534 1.106351 TCCGTGTGGTGCAAAATGCT 61.106 50.000 3.78 0.00 45.31 3.79
503 545 1.208535 TGGCTAATTAGGTCCGTGTGG 59.791 52.381 14.28 0.00 0.00 4.17
515 557 8.748412 TCATATGCTTTGTTTAGTTGGCTAATT 58.252 29.630 0.00 0.00 37.09 1.40
516 558 8.292444 TCATATGCTTTGTTTAGTTGGCTAAT 57.708 30.769 0.00 0.00 37.09 1.73
523 565 8.131100 CCATCGAATCATATGCTTTGTTTAGTT 58.869 33.333 6.46 0.00 0.00 2.24
524 566 7.283127 ACCATCGAATCATATGCTTTGTTTAGT 59.717 33.333 6.46 0.00 0.00 2.24
525 567 7.642669 ACCATCGAATCATATGCTTTGTTTAG 58.357 34.615 6.46 0.00 0.00 1.85
526 568 7.518211 CGACCATCGAATCATATGCTTTGTTTA 60.518 37.037 6.46 0.00 43.74 2.01
527 569 6.455360 ACCATCGAATCATATGCTTTGTTT 57.545 33.333 6.46 0.00 0.00 2.83
528 570 5.277490 CGACCATCGAATCATATGCTTTGTT 60.277 40.000 6.46 0.00 43.74 2.83
529 571 4.212004 CGACCATCGAATCATATGCTTTGT 59.788 41.667 6.46 0.00 43.74 2.83
530 572 4.448732 TCGACCATCGAATCATATGCTTTG 59.551 41.667 0.00 0.00 46.90 2.77
531 573 4.631131 TCGACCATCGAATCATATGCTTT 58.369 39.130 0.00 0.00 46.90 3.51
532 574 4.257267 TCGACCATCGAATCATATGCTT 57.743 40.909 0.00 0.00 46.90 3.91
533 575 3.942130 TCGACCATCGAATCATATGCT 57.058 42.857 0.00 0.00 46.90 3.79
552 594 3.508840 CAAAGCGGGCGGGATGTC 61.509 66.667 0.00 0.00 0.00 3.06
553 595 4.344865 ACAAAGCGGGCGGGATGT 62.345 61.111 0.00 0.00 0.00 3.06
554 596 3.508840 GACAAAGCGGGCGGGATG 61.509 66.667 0.00 0.00 0.00 3.51
555 597 4.796495 GGACAAAGCGGGCGGGAT 62.796 66.667 0.00 0.00 0.00 3.85
558 600 3.737172 CAAGGACAAAGCGGGCGG 61.737 66.667 0.00 0.00 0.00 6.13
559 601 3.737172 CCAAGGACAAAGCGGGCG 61.737 66.667 0.00 0.00 0.00 6.13
560 602 2.282180 TCCAAGGACAAAGCGGGC 60.282 61.111 0.00 0.00 0.00 6.13
561 603 3.668386 GTCCAAGGACAAAGCGGG 58.332 61.111 14.19 0.00 44.02 6.13
569 611 1.275291 TCTCCGAACATGTCCAAGGAC 59.725 52.381 12.30 12.30 44.77 3.85
570 612 1.639722 TCTCCGAACATGTCCAAGGA 58.360 50.000 0.00 5.15 0.00 3.36
571 613 2.283298 CATCTCCGAACATGTCCAAGG 58.717 52.381 0.00 0.42 0.00 3.61
572 614 2.932614 GACATCTCCGAACATGTCCAAG 59.067 50.000 0.00 0.00 42.11 3.61
573 615 2.567169 AGACATCTCCGAACATGTCCAA 59.433 45.455 0.00 0.00 46.96 3.53
574 616 2.179427 AGACATCTCCGAACATGTCCA 58.821 47.619 0.00 0.00 46.96 4.02
575 617 2.969628 AGACATCTCCGAACATGTCC 57.030 50.000 0.00 0.00 46.96 4.02
576 618 3.372206 CCAAAGACATCTCCGAACATGTC 59.628 47.826 0.00 10.39 46.38 3.06
577 619 3.007940 TCCAAAGACATCTCCGAACATGT 59.992 43.478 0.00 0.00 35.88 3.21
578 620 3.599343 TCCAAAGACATCTCCGAACATG 58.401 45.455 0.00 0.00 0.00 3.21
579 621 3.981071 TCCAAAGACATCTCCGAACAT 57.019 42.857 0.00 0.00 0.00 2.71
580 622 3.981071 ATCCAAAGACATCTCCGAACA 57.019 42.857 0.00 0.00 0.00 3.18
581 623 6.238484 CCAAATATCCAAAGACATCTCCGAAC 60.238 42.308 0.00 0.00 0.00 3.95
582 624 5.822519 CCAAATATCCAAAGACATCTCCGAA 59.177 40.000 0.00 0.00 0.00 4.30
583 625 5.104527 ACCAAATATCCAAAGACATCTCCGA 60.105 40.000 0.00 0.00 0.00 4.55
584 626 5.008019 CACCAAATATCCAAAGACATCTCCG 59.992 44.000 0.00 0.00 0.00 4.63
585 627 5.221126 GCACCAAATATCCAAAGACATCTCC 60.221 44.000 0.00 0.00 0.00 3.71
586 628 5.357878 TGCACCAAATATCCAAAGACATCTC 59.642 40.000 0.00 0.00 0.00 2.75
587 629 5.263599 TGCACCAAATATCCAAAGACATCT 58.736 37.500 0.00 0.00 0.00 2.90
588 630 5.126061 ACTGCACCAAATATCCAAAGACATC 59.874 40.000 0.00 0.00 0.00 3.06
589 631 5.018809 ACTGCACCAAATATCCAAAGACAT 58.981 37.500 0.00 0.00 0.00 3.06
590 632 4.406456 ACTGCACCAAATATCCAAAGACA 58.594 39.130 0.00 0.00 0.00 3.41
591 633 4.437390 CGACTGCACCAAATATCCAAAGAC 60.437 45.833 0.00 0.00 0.00 3.01
592 634 3.689161 CGACTGCACCAAATATCCAAAGA 59.311 43.478 0.00 0.00 0.00 2.52
593 635 3.440173 ACGACTGCACCAAATATCCAAAG 59.560 43.478 0.00 0.00 0.00 2.77
594 636 3.417101 ACGACTGCACCAAATATCCAAA 58.583 40.909 0.00 0.00 0.00 3.28
595 637 3.066291 ACGACTGCACCAAATATCCAA 57.934 42.857 0.00 0.00 0.00 3.53
596 638 2.779755 ACGACTGCACCAAATATCCA 57.220 45.000 0.00 0.00 0.00 3.41
597 639 3.438781 TCAAACGACTGCACCAAATATCC 59.561 43.478 0.00 0.00 0.00 2.59
598 640 4.678509 TCAAACGACTGCACCAAATATC 57.321 40.909 0.00 0.00 0.00 1.63
599 641 4.699735 TCATCAAACGACTGCACCAAATAT 59.300 37.500 0.00 0.00 0.00 1.28
600 642 4.068599 TCATCAAACGACTGCACCAAATA 58.931 39.130 0.00 0.00 0.00 1.40
601 643 2.884012 TCATCAAACGACTGCACCAAAT 59.116 40.909 0.00 0.00 0.00 2.32
602 644 2.293170 TCATCAAACGACTGCACCAAA 58.707 42.857 0.00 0.00 0.00 3.28
603 645 1.960417 TCATCAAACGACTGCACCAA 58.040 45.000 0.00 0.00 0.00 3.67
604 646 2.076100 GATCATCAAACGACTGCACCA 58.924 47.619 0.00 0.00 0.00 4.17
605 647 2.076100 TGATCATCAAACGACTGCACC 58.924 47.619 0.00 0.00 0.00 5.01
606 648 2.159653 GGTGATCATCAAACGACTGCAC 60.160 50.000 0.00 0.00 0.00 4.57
607 649 2.076100 GGTGATCATCAAACGACTGCA 58.924 47.619 0.00 0.00 0.00 4.41
608 650 1.061131 CGGTGATCATCAAACGACTGC 59.939 52.381 6.80 0.00 32.88 4.40
609 651 2.337583 ACGGTGATCATCAAACGACTG 58.662 47.619 17.23 0.44 34.49 3.51
610 652 2.736721 CAACGGTGATCATCAAACGACT 59.263 45.455 17.23 4.05 34.49 4.18
611 653 2.159707 CCAACGGTGATCATCAAACGAC 60.160 50.000 17.23 0.00 34.49 4.34
612 654 2.073056 CCAACGGTGATCATCAAACGA 58.927 47.619 17.23 0.00 34.49 3.85
613 655 2.073056 TCCAACGGTGATCATCAAACG 58.927 47.619 0.00 10.55 35.85 3.60
614 656 3.074412 ACTCCAACGGTGATCATCAAAC 58.926 45.455 0.00 0.00 0.00 2.93
615 657 3.417069 ACTCCAACGGTGATCATCAAA 57.583 42.857 0.00 0.00 0.00 2.69
616 658 3.073678 CAACTCCAACGGTGATCATCAA 58.926 45.455 0.00 0.00 0.00 2.57
617 659 2.698803 CAACTCCAACGGTGATCATCA 58.301 47.619 0.00 0.00 0.00 3.07
618 660 1.398390 GCAACTCCAACGGTGATCATC 59.602 52.381 0.00 0.00 0.00 2.92
619 661 1.453155 GCAACTCCAACGGTGATCAT 58.547 50.000 0.00 0.00 0.00 2.45
620 662 0.605319 GGCAACTCCAACGGTGATCA 60.605 55.000 0.00 0.00 34.01 2.92
621 663 1.305930 GGGCAACTCCAACGGTGATC 61.306 60.000 0.00 0.00 36.21 2.92
622 664 1.303317 GGGCAACTCCAACGGTGAT 60.303 57.895 0.00 0.00 36.21 3.06
623 665 1.122632 TAGGGCAACTCCAACGGTGA 61.123 55.000 0.00 0.00 36.21 4.02
624 666 0.673644 CTAGGGCAACTCCAACGGTG 60.674 60.000 0.00 0.00 36.21 4.94
625 667 1.125711 ACTAGGGCAACTCCAACGGT 61.126 55.000 0.00 0.00 36.21 4.83
626 668 0.673644 CACTAGGGCAACTCCAACGG 60.674 60.000 0.00 0.00 36.21 4.44
627 669 0.034896 ACACTAGGGCAACTCCAACG 59.965 55.000 0.00 0.00 36.21 4.10
628 670 1.071699 TGACACTAGGGCAACTCCAAC 59.928 52.381 0.00 0.00 36.21 3.77
629 671 1.071699 GTGACACTAGGGCAACTCCAA 59.928 52.381 0.00 0.00 36.21 3.53
630 672 0.685097 GTGACACTAGGGCAACTCCA 59.315 55.000 0.00 0.00 36.21 3.86
631 673 0.036294 GGTGACACTAGGGCAACTCC 60.036 60.000 5.39 0.00 0.00 3.85
632 674 0.685097 TGGTGACACTAGGGCAACTC 59.315 55.000 5.39 0.00 33.40 3.01
633 675 1.136828 TTGGTGACACTAGGGCAACT 58.863 50.000 5.39 0.00 42.67 3.16
634 676 2.200373 ATTGGTGACACTAGGGCAAC 57.800 50.000 5.39 0.00 42.67 4.17
635 677 2.890311 CAAATTGGTGACACTAGGGCAA 59.110 45.455 5.39 1.18 42.67 4.52
636 678 2.513753 CAAATTGGTGACACTAGGGCA 58.486 47.619 5.39 0.00 42.67 5.36
637 679 1.202348 GCAAATTGGTGACACTAGGGC 59.798 52.381 5.39 0.00 42.67 5.19
645 687 1.544246 GTAGGGGTGCAAATTGGTGAC 59.456 52.381 0.00 0.00 0.00 3.67
661 703 1.689273 GCAGGGATCCTACTGTGTAGG 59.311 57.143 12.58 15.52 37.07 3.18
665 707 0.824109 TTCGCAGGGATCCTACTGTG 59.176 55.000 19.89 19.89 44.37 3.66
668 711 3.933861 ATTTTTCGCAGGGATCCTACT 57.066 42.857 12.58 0.00 29.64 2.57
731 774 3.387397 AGTTGTTCGAGGTTTCGGTAAG 58.613 45.455 0.00 0.00 46.67 2.34
823 866 0.875059 GACGGGTCAAAGGCTCAAAG 59.125 55.000 0.00 0.00 0.00 2.77
824 867 0.472471 AGACGGGTCAAAGGCTCAAA 59.528 50.000 1.17 0.00 0.00 2.69
825 868 0.250295 CAGACGGGTCAAAGGCTCAA 60.250 55.000 1.17 0.00 0.00 3.02
826 869 1.371183 CAGACGGGTCAAAGGCTCA 59.629 57.895 1.17 0.00 0.00 4.26
827 870 0.250338 AACAGACGGGTCAAAGGCTC 60.250 55.000 1.17 0.00 0.00 4.70
828 871 0.182775 AAACAGACGGGTCAAAGGCT 59.817 50.000 1.17 0.00 0.00 4.58
829 872 0.591659 GAAACAGACGGGTCAAAGGC 59.408 55.000 1.17 0.00 0.00 4.35
830 873 2.256117 AGAAACAGACGGGTCAAAGG 57.744 50.000 1.17 0.00 0.00 3.11
884 927 9.965824 ATCTTTTGTGGATTTTGTTTACTAGTG 57.034 29.630 5.39 0.00 0.00 2.74
956 999 1.815384 TTGGAGGAGGAGGAGCTGGA 61.815 60.000 0.00 0.00 0.00 3.86
957 1000 1.306482 TTGGAGGAGGAGGAGCTGG 60.306 63.158 0.00 0.00 0.00 4.85
958 1001 1.970352 GCTTGGAGGAGGAGGAGCTG 61.970 65.000 0.00 0.00 0.00 4.24
959 1002 1.688884 GCTTGGAGGAGGAGGAGCT 60.689 63.158 0.00 0.00 0.00 4.09
960 1003 2.741055 GGCTTGGAGGAGGAGGAGC 61.741 68.421 0.00 0.00 0.00 4.70
961 1004 1.306482 TGGCTTGGAGGAGGAGGAG 60.306 63.158 0.00 0.00 0.00 3.69
962 1005 1.613630 GTGGCTTGGAGGAGGAGGA 60.614 63.158 0.00 0.00 0.00 3.71
963 1006 2.674220 GGTGGCTTGGAGGAGGAGG 61.674 68.421 0.00 0.00 0.00 4.30
975 1018 2.063979 TGATCGAATCGGGGTGGCT 61.064 57.895 1.76 0.00 0.00 4.75
1025 1068 3.591835 CTCTCCTCTCCTCGCCGC 61.592 72.222 0.00 0.00 0.00 6.53
1041 1084 2.283809 CTCATCCCCTCCCGTCCT 59.716 66.667 0.00 0.00 0.00 3.85
1042 1085 2.844839 CCTCATCCCCTCCCGTCC 60.845 72.222 0.00 0.00 0.00 4.79
1043 1086 1.382695 TTCCTCATCCCCTCCCGTC 60.383 63.158 0.00 0.00 0.00 4.79
1044 1087 1.383248 CTTCCTCATCCCCTCCCGT 60.383 63.158 0.00 0.00 0.00 5.28
1045 1088 2.812619 GCTTCCTCATCCCCTCCCG 61.813 68.421 0.00 0.00 0.00 5.14
1200 1243 2.366640 TGAGTATCTCCGAGGGGAAG 57.633 55.000 0.00 0.00 43.27 3.46
1324 1367 7.884877 TCCATCCATCCATGTAAGCTTAATAAG 59.115 37.037 7.99 0.00 0.00 1.73
1325 1368 7.754624 TCCATCCATCCATGTAAGCTTAATAA 58.245 34.615 7.99 0.00 0.00 1.40
1326 1369 7.328404 TCCATCCATCCATGTAAGCTTAATA 57.672 36.000 7.99 0.67 0.00 0.98
1477 1521 6.432607 TTCCTCACGCTATAATCCTATACG 57.567 41.667 0.00 0.00 0.00 3.06
1603 1962 4.847367 GCATCTGGGGGCCTTGGG 62.847 72.222 0.84 0.00 0.00 4.12
1702 2072 0.036483 GAAAATGTGCCGGCCCATTT 60.036 50.000 35.04 35.04 41.69 2.32
1712 2082 1.664643 CCGCGCGAAAGAAAATGTGC 61.665 55.000 34.63 0.00 34.65 4.57
1722 2092 1.658686 AAAATATGGGCCGCGCGAAA 61.659 50.000 34.63 13.97 0.00 3.46
1994 2403 0.459489 GTTTGCACAGCTCACCCAAA 59.541 50.000 0.00 0.00 0.00 3.28
2089 2503 9.716531 TGATCATTCAACATAATCATAGAGGAC 57.283 33.333 0.00 0.00 0.00 3.85
2101 2517 5.706833 ACTGCTTGTGTGATCATTCAACATA 59.293 36.000 0.00 0.00 32.48 2.29
2230 2701 2.351111 GAGAAGAGGCAGAGATTTTGCG 59.649 50.000 0.00 0.00 42.42 4.85
2384 2858 2.338500 CGTTCTCTGGTGTTAGGAAGC 58.662 52.381 0.00 0.00 0.00 3.86
2390 2864 3.128349 GTTTCAGCGTTCTCTGGTGTTA 58.872 45.455 0.00 0.00 36.29 2.41
2646 3124 2.611518 CGGAGTACTTGAAAGAGCCAG 58.388 52.381 0.00 0.00 0.00 4.85
2800 3278 5.355350 CGTTGGCTTCTCCTCTTATCAAAAT 59.645 40.000 0.00 0.00 35.26 1.82
2933 3416 2.638480 TCCCCACTCTTCAAACACAG 57.362 50.000 0.00 0.00 0.00 3.66
3208 3700 1.896660 GCTTCTTGAACCACGCCCA 60.897 57.895 0.00 0.00 0.00 5.36
3219 3711 4.697756 TCACCGGCCGGCTTCTTG 62.698 66.667 43.58 32.07 39.32 3.02
3290 3783 2.254651 GGTGTTCTCGCTCGACGT 59.745 61.111 0.00 0.00 44.19 4.34
3432 3945 3.576259 ACCCACAAACCTCCCCCG 61.576 66.667 0.00 0.00 0.00 5.73
3778 4321 3.140325 TGGAGAAACTAAGGGCAACAG 57.860 47.619 0.00 0.00 39.74 3.16
3779 4322 3.219281 GTTGGAGAAACTAAGGGCAACA 58.781 45.455 0.00 0.00 35.75 3.33
3927 4472 2.397597 ACATTGGAAATATGCACCCCC 58.602 47.619 0.00 0.00 0.00 5.40
4147 4711 3.323775 TGTGGGTCCTAAAAAGAGGAGT 58.676 45.455 0.00 0.00 46.54 3.85
4387 4955 1.144057 CTACATCACCCCCTGCGAC 59.856 63.158 0.00 0.00 0.00 5.19
4389 4957 0.744414 CAACTACATCACCCCCTGCG 60.744 60.000 0.00 0.00 0.00 5.18
4424 4992 2.587777 TCTTGTATCCTCCACCTCCTCT 59.412 50.000 0.00 0.00 0.00 3.69
4483 8310 2.175878 ATCGCAGGATCTACAATGCC 57.824 50.000 0.00 0.00 35.22 4.40
4638 8465 2.990740 AACAACCAAGGCCTCCAATA 57.009 45.000 5.23 0.00 0.00 1.90
4639 8466 2.101640 AAACAACCAAGGCCTCCAAT 57.898 45.000 5.23 0.00 0.00 3.16
4669 8496 9.219603 CTATTGAAAAATCTCAGTAAGACACCA 57.780 33.333 0.00 0.00 36.65 4.17
4671 8498 9.220767 ACCTATTGAAAAATCTCAGTAAGACAC 57.779 33.333 0.00 0.00 36.65 3.67
5171 8999 3.071479 TGCAGGATAGAACAACGGAAAC 58.929 45.455 0.00 0.00 0.00 2.78
5177 9005 5.412594 TGTCAATCTTGCAGGATAGAACAAC 59.587 40.000 12.23 5.26 0.00 3.32
5242 9070 5.115480 GGGAGATTGAGAGTGAAGAATGTC 58.885 45.833 0.00 0.00 0.00 3.06
5365 9193 1.291132 GTGCTTTATCCCTCTCGCAC 58.709 55.000 0.00 0.00 40.53 5.34
5632 9461 7.218204 CAGCAGAAGTTTTGTACAAGTGTAAAC 59.782 37.037 8.56 9.83 31.52 2.01
5813 9648 3.733024 TTTTCACGCTATTTGCTACCG 57.267 42.857 0.00 0.00 40.11 4.02
5866 9701 6.154203 TCAAACCTTTGAAATATGCACACA 57.846 33.333 0.00 0.00 43.62 3.72
5933 9768 6.095377 CCTTTTCATGGTTTCAATGAGTAGC 58.905 40.000 0.00 0.00 0.00 3.58
5935 9770 5.538053 TGCCTTTTCATGGTTTCAATGAGTA 59.462 36.000 0.00 0.00 0.00 2.59
5947 9782 5.841810 TGTTTACTTCTTGCCTTTTCATGG 58.158 37.500 0.00 0.00 0.00 3.66
6074 9909 6.680378 GCCCACCATGAATTTCATACAACTAC 60.680 42.308 11.44 0.00 34.28 2.73
6241 10077 2.699160 AGATAGGCACCTGGACATCAT 58.301 47.619 0.00 0.00 0.00 2.45
6266 10102 3.005539 GACCCTGGAGCCTGCTGA 61.006 66.667 0.00 0.00 0.00 4.26
6338 10174 1.389609 CCGGGAGCTTAGCTTCGGTA 61.390 60.000 28.42 0.00 44.31 4.02
6387 10223 2.636403 CCATCATGCTATCAGTCCCAGA 59.364 50.000 0.00 0.00 0.00 3.86
6584 10420 4.048504 ACAAAGTTGAATAAAAGCACGCC 58.951 39.130 0.00 0.00 0.00 5.68
6651 10487 8.797438 TGTACAATTTAACAGGCACATATGAAA 58.203 29.630 10.38 0.00 0.00 2.69
6723 10567 5.167279 CGTGCGATCGAAAAATAAGTTTAGC 59.833 40.000 21.57 0.00 0.00 3.09
6738 10582 1.217585 ATGCATTCTCCGTGCGATCG 61.218 55.000 11.69 11.69 45.37 3.69
6758 10602 1.331680 CGGCGTGCACGAAATACATAC 60.332 52.381 41.19 20.04 43.02 2.39
6785 10631 9.158233 CATATGTGCAAAATCCATTTTTCTTCT 57.842 29.630 0.00 0.00 37.86 2.85
6804 10652 2.349580 CACTCACGCTGTTCCATATGTG 59.650 50.000 1.24 0.00 0.00 3.21
6810 10658 0.107897 AACACACTCACGCTGTTCCA 60.108 50.000 0.00 0.00 0.00 3.53
6824 10672 1.003003 TCATCCAATCTCCGCAACACA 59.997 47.619 0.00 0.00 0.00 3.72
6832 10680 3.142174 GGAACCGATTCATCCAATCTCC 58.858 50.000 0.00 0.00 39.15 3.71
6901 10829 6.640518 TGTAGGATCTCAAAATACTGACACC 58.359 40.000 0.00 0.00 0.00 4.16
6902 10830 7.766278 ACATGTAGGATCTCAAAATACTGACAC 59.234 37.037 0.00 0.00 0.00 3.67
6906 10834 8.147058 AGCTACATGTAGGATCTCAAAATACTG 58.853 37.037 29.45 4.09 33.87 2.74
7225 12466 2.174360 GTACCGGACTACCAACTCCTT 58.826 52.381 9.46 0.00 35.59 3.36
7278 12519 5.364157 AGCTAGGAAAGTTAGATCCGTGATT 59.636 40.000 0.00 0.00 40.78 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.