Multiple sequence alignment - TraesCS7D01G224600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G224600 chr7D 100.000 2672 0 0 1 2672 184984535 184987206 0.000000e+00 4935.0
1 TraesCS7D01G224600 chr7D 91.309 1001 62 11 1046 2038 117876817 117875834 0.000000e+00 1343.0
2 TraesCS7D01G224600 chr7D 95.389 759 21 2 266 1010 43438251 43439009 0.000000e+00 1195.0
3 TraesCS7D01G224600 chr7D 88.142 1012 73 17 1046 2040 83750408 83749427 0.000000e+00 1160.0
4 TraesCS7D01G224600 chr7D 99.185 368 1 1 2307 2672 121779410 121779043 0.000000e+00 662.0
5 TraesCS7D01G224600 chr7D 94.237 295 15 1 1 293 43438020 43438314 1.460000e-122 449.0
6 TraesCS7D01G224600 chr7D 87.000 200 18 2 822 1013 184984471 184984272 4.480000e-53 219.0
7 TraesCS7D01G224600 chr7D 93.750 64 4 0 266 329 184984764 184984827 2.190000e-16 97.1
8 TraesCS7D01G224600 chr7D 93.750 64 4 0 230 293 184984800 184984863 2.190000e-16 97.1
9 TraesCS7D01G224600 chr4D 91.128 1037 72 14 1014 2040 461223103 461224129 0.000000e+00 1387.0
10 TraesCS7D01G224600 chr4D 85.446 1010 75 26 1046 2040 133734510 133733558 0.000000e+00 985.0
11 TraesCS7D01G224600 chr4D 99.187 369 1 1 2306 2672 488441822 488441454 0.000000e+00 664.0
12 TraesCS7D01G224600 chr4D 98.919 370 2 1 2305 2672 456289773 456290142 0.000000e+00 660.0
13 TraesCS7D01G224600 chr4D 93.662 142 9 0 152 293 435205715 435205574 2.080000e-51 213.0
14 TraesCS7D01G224600 chr4D 95.968 124 5 0 268 391 292620118 292619995 4.510000e-48 202.0
15 TraesCS7D01G224600 chr4D 95.238 126 6 0 266 391 435205637 435205512 1.620000e-47 200.0
16 TraesCS7D01G224600 chr4D 90.654 107 10 0 907 1013 193872894 193873000 2.770000e-30 143.0
17 TraesCS7D01G224600 chr5D 90.190 1050 74 13 1014 2040 477033846 477032803 0.000000e+00 1341.0
18 TraesCS7D01G224600 chr5D 97.638 381 7 1 2294 2672 543049625 543050005 0.000000e+00 652.0
19 TraesCS7D01G224600 chr5D 90.741 108 10 0 907 1014 384692345 384692452 7.710000e-31 145.0
20 TraesCS7D01G224600 chr2D 90.278 1008 71 9 1046 2040 567055039 567054046 0.000000e+00 1293.0
21 TraesCS7D01G224600 chr2D 87.582 1063 55 14 1014 2040 444368104 444369125 0.000000e+00 1160.0
22 TraesCS7D01G224600 chr2D 99.189 370 1 1 2305 2672 107554307 107554676 0.000000e+00 665.0
23 TraesCS7D01G224600 chr2D 98.922 371 2 1 2304 2672 612512753 612513123 0.000000e+00 662.0
24 TraesCS7D01G224600 chr2D 90.654 107 10 0 907 1013 413773421 413773527 2.770000e-30 143.0
25 TraesCS7D01G224600 chr2D 90.654 107 10 0 907 1013 609889892 609889998 2.770000e-30 143.0
26 TraesCS7D01G224600 chr2B 88.717 1037 76 12 1014 2040 61282404 61283409 0.000000e+00 1229.0
27 TraesCS7D01G224600 chr2B 87.121 1056 73 20 1014 2040 407213610 407214631 0.000000e+00 1138.0
28 TraesCS7D01G224600 chr2B 89.510 572 59 1 266 836 125805677 125806248 0.000000e+00 723.0
29 TraesCS7D01G224600 chr2B 91.774 389 30 2 1046 1433 170992031 170992418 8.420000e-150 540.0
30 TraesCS7D01G224600 chr2B 83.212 274 29 5 22 293 125805482 125805740 4.450000e-58 235.0
31 TraesCS7D01G224600 chr2B 85.380 171 17 1 851 1013 125805364 125805194 1.270000e-38 171.0
32 TraesCS7D01G224600 chr6D 87.770 1063 69 20 1014 2037 465174149 465175189 0.000000e+00 1186.0
33 TraesCS7D01G224600 chr6D 91.185 726 41 10 1328 2040 470264211 470263496 0.000000e+00 965.0
34 TraesCS7D01G224600 chr6D 99.191 371 1 1 2304 2672 473257620 473257250 0.000000e+00 667.0
35 TraesCS7D01G224600 chr3D 92.611 785 52 4 1046 1828 384265918 384265138 0.000000e+00 1123.0
36 TraesCS7D01G224600 chr3D 98.408 377 3 2 2298 2672 512523182 512522807 0.000000e+00 660.0
37 TraesCS7D01G224600 chr7A 91.223 752 45 8 1296 2037 369578028 369578768 0.000000e+00 1003.0
38 TraesCS7D01G224600 chr7A 94.565 92 4 1 2189 2279 192367914 192368005 9.970000e-30 141.0
39 TraesCS7D01G224600 chr3B 90.882 669 55 4 1014 1678 33499102 33498436 0.000000e+00 893.0
40 TraesCS7D01G224600 chr2A 81.690 923 91 35 1014 1900 698817327 698816447 0.000000e+00 697.0
41 TraesCS7D01G224600 chr1D 97.889 379 5 2 2296 2672 484820916 484820539 0.000000e+00 652.0
42 TraesCS7D01G224600 chr1D 89.744 117 9 2 907 1022 465569334 465569448 2.140000e-31 147.0
43 TraesCS7D01G224600 chr3A 87.500 360 39 5 1014 1369 572551083 572550726 6.880000e-111 411.0
44 TraesCS7D01G224600 chr7B 93.939 165 7 2 2042 2206 154793161 154793322 2.050000e-61 246.0
45 TraesCS7D01G224600 chr7B 96.330 109 4 0 2203 2311 154808573 154808681 2.110000e-41 180.0
46 TraesCS7D01G224600 chrUn 89.720 107 11 0 907 1013 342705850 342705744 1.290000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G224600 chr7D 184984535 184987206 2671 False 1709.733333 4935 95.833333 1 2672 3 chr7D.!!$F2 2671
1 TraesCS7D01G224600 chr7D 117875834 117876817 983 True 1343.000000 1343 91.309000 1046 2038 1 chr7D.!!$R2 992
2 TraesCS7D01G224600 chr7D 83749427 83750408 981 True 1160.000000 1160 88.142000 1046 2040 1 chr7D.!!$R1 994
3 TraesCS7D01G224600 chr7D 43438020 43439009 989 False 822.000000 1195 94.813000 1 1010 2 chr7D.!!$F1 1009
4 TraesCS7D01G224600 chr4D 461223103 461224129 1026 False 1387.000000 1387 91.128000 1014 2040 1 chr4D.!!$F3 1026
5 TraesCS7D01G224600 chr4D 133733558 133734510 952 True 985.000000 985 85.446000 1046 2040 1 chr4D.!!$R1 994
6 TraesCS7D01G224600 chr5D 477032803 477033846 1043 True 1341.000000 1341 90.190000 1014 2040 1 chr5D.!!$R1 1026
7 TraesCS7D01G224600 chr2D 567054046 567055039 993 True 1293.000000 1293 90.278000 1046 2040 1 chr2D.!!$R1 994
8 TraesCS7D01G224600 chr2D 444368104 444369125 1021 False 1160.000000 1160 87.582000 1014 2040 1 chr2D.!!$F3 1026
9 TraesCS7D01G224600 chr2B 61282404 61283409 1005 False 1229.000000 1229 88.717000 1014 2040 1 chr2B.!!$F1 1026
10 TraesCS7D01G224600 chr2B 407213610 407214631 1021 False 1138.000000 1138 87.121000 1014 2040 1 chr2B.!!$F3 1026
11 TraesCS7D01G224600 chr2B 125805482 125806248 766 False 479.000000 723 86.361000 22 836 2 chr2B.!!$F4 814
12 TraesCS7D01G224600 chr6D 465174149 465175189 1040 False 1186.000000 1186 87.770000 1014 2037 1 chr6D.!!$F1 1023
13 TraesCS7D01G224600 chr6D 470263496 470264211 715 True 965.000000 965 91.185000 1328 2040 1 chr6D.!!$R1 712
14 TraesCS7D01G224600 chr3D 384265138 384265918 780 True 1123.000000 1123 92.611000 1046 1828 1 chr3D.!!$R1 782
15 TraesCS7D01G224600 chr7A 369578028 369578768 740 False 1003.000000 1003 91.223000 1296 2037 1 chr7A.!!$F2 741
16 TraesCS7D01G224600 chr3B 33498436 33499102 666 True 893.000000 893 90.882000 1014 1678 1 chr3B.!!$R1 664
17 TraesCS7D01G224600 chr2A 698816447 698817327 880 True 697.000000 697 81.690000 1014 1900 1 chr2A.!!$R1 886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 871 0.24912 TATGCGGACCTGACTTGTGG 59.751 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2308 2479 0.037139 AACGCACGGGCATTGTACTA 60.037 50.0 11.77 0.0 41.24 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 133 3.710722 CCGCACCCTGCTCCTCTT 61.711 66.667 0.00 0.00 42.25 2.85
207 210 4.329545 GCGTTGACCCCTGCTCCA 62.330 66.667 0.00 0.00 0.00 3.86
256 259 4.767255 CACACGCCTGGGAGGAGC 62.767 72.222 0.00 0.00 38.91 4.70
258 261 4.767255 CACGCCTGGGAGGAGCAC 62.767 72.222 0.00 0.00 38.91 4.40
284 287 4.742201 CCCTCGTCCACACGCCTG 62.742 72.222 0.00 0.00 46.28 4.85
285 288 4.742201 CCTCGTCCACACGCCTGG 62.742 72.222 0.00 0.00 46.28 4.45
286 289 4.742201 CTCGTCCACACGCCTGGG 62.742 72.222 0.00 0.00 46.28 4.45
288 291 4.742201 CGTCCACACGCCTGGGAG 62.742 72.222 0.00 0.00 39.69 4.30
289 292 4.394712 GTCCACACGCCTGGGAGG 62.395 72.222 0.00 0.00 38.80 4.30
290 293 4.631740 TCCACACGCCTGGGAGGA 62.632 66.667 0.00 0.00 37.67 3.71
291 294 4.087892 CCACACGCCTGGGAGGAG 62.088 72.222 0.00 0.00 41.31 3.69
434 444 2.285368 CACCCTCCACCTAGCCCA 60.285 66.667 0.00 0.00 0.00 5.36
651 661 4.373116 GGTGACTTCCAGGCGCGA 62.373 66.667 12.10 0.00 33.61 5.87
699 709 3.068732 CGAGTGCATTGGGATTCTCTCTA 59.931 47.826 0.00 0.00 0.00 2.43
710 720 1.248486 TTCTCTCTATGCCCCGATCG 58.752 55.000 8.51 8.51 0.00 3.69
749 759 4.391216 ACATGAACGAGCAGAGAAGATTTG 59.609 41.667 0.00 0.00 0.00 2.32
806 816 3.761218 TCCCATTTGTCATAACGTGCAAT 59.239 39.130 0.00 0.00 0.00 3.56
861 871 0.249120 TATGCGGACCTGACTTGTGG 59.751 55.000 0.00 0.00 0.00 4.17
923 940 2.548057 GTCATTTTTGAGACAGCCGACA 59.452 45.455 0.00 0.00 34.93 4.35
1010 1027 9.556030 GAAAAGTGGTAGTTTTATGCTATTCAC 57.444 33.333 0.00 0.00 31.40 3.18
1011 1028 8.863872 AAAGTGGTAGTTTTATGCTATTCACT 57.136 30.769 0.00 0.00 37.38 3.41
1012 1029 8.494016 AAGTGGTAGTTTTATGCTATTCACTC 57.506 34.615 0.00 0.00 36.16 3.51
1149 1195 4.292306 AGGTTGTTGGATTGGGAGAAGTAT 59.708 41.667 0.00 0.00 0.00 2.12
1200 1246 0.035056 AGGCGCAAAAGGAGTATGCT 60.035 50.000 10.83 0.00 40.15 3.79
1584 1699 3.642981 CATGATGATGCGGCGCGT 61.643 61.111 28.67 28.67 0.00 6.01
1606 1729 5.568825 CGTAACAATGAAGAGGAGGAGGAAA 60.569 44.000 0.00 0.00 0.00 3.13
1633 1756 1.410882 CTTCGGAGGAGGAGGATGAAC 59.589 57.143 0.00 0.00 0.00 3.18
1686 1828 2.416431 GGCTTGATTGTTGATGTGCCTC 60.416 50.000 0.00 0.00 36.52 4.70
1687 1829 2.229543 GCTTGATTGTTGATGTGCCTCA 59.770 45.455 0.00 0.00 0.00 3.86
1824 1971 8.698854 ACTTGTTTGTGTGATTTAAATTATGCG 58.301 29.630 1.43 0.00 0.00 4.73
1828 1975 7.448588 TTGTGTGATTTAAATTATGCGATGC 57.551 32.000 1.43 0.00 0.00 3.91
1842 1993 2.035704 TGCGATGCCTTTGTTTTGATGT 59.964 40.909 0.00 0.00 0.00 3.06
1844 1995 3.494251 GCGATGCCTTTGTTTTGATGTTT 59.506 39.130 0.00 0.00 0.00 2.83
1845 1996 4.608890 GCGATGCCTTTGTTTTGATGTTTG 60.609 41.667 0.00 0.00 0.00 2.93
1846 1997 4.744137 CGATGCCTTTGTTTTGATGTTTGA 59.256 37.500 0.00 0.00 0.00 2.69
1847 1998 5.233902 CGATGCCTTTGTTTTGATGTTTGAA 59.766 36.000 0.00 0.00 0.00 2.69
1915 2078 2.278142 GCATTTTAGCGCGCCTGG 60.278 61.111 30.33 12.87 0.00 4.45
2048 2219 3.633361 GCTGTTGGAGCCTGTTACT 57.367 52.632 0.00 0.00 42.54 2.24
2049 2220 1.443802 GCTGTTGGAGCCTGTTACTC 58.556 55.000 0.00 0.00 42.54 2.59
2050 2221 1.270839 GCTGTTGGAGCCTGTTACTCA 60.271 52.381 0.00 0.00 42.54 3.41
2051 2222 2.810400 GCTGTTGGAGCCTGTTACTCAA 60.810 50.000 0.00 0.00 42.54 3.02
2052 2223 3.476552 CTGTTGGAGCCTGTTACTCAAA 58.523 45.455 0.00 0.00 35.79 2.69
2053 2224 3.882888 CTGTTGGAGCCTGTTACTCAAAA 59.117 43.478 0.00 0.00 35.79 2.44
2054 2225 3.882888 TGTTGGAGCCTGTTACTCAAAAG 59.117 43.478 0.00 0.00 35.79 2.27
2055 2226 2.504367 TGGAGCCTGTTACTCAAAAGC 58.496 47.619 0.00 0.00 35.79 3.51
2056 2227 1.813178 GGAGCCTGTTACTCAAAAGCC 59.187 52.381 0.00 0.00 35.79 4.35
2057 2228 1.813178 GAGCCTGTTACTCAAAAGCCC 59.187 52.381 0.00 0.00 34.18 5.19
2058 2229 1.144913 AGCCTGTTACTCAAAAGCCCA 59.855 47.619 0.00 0.00 0.00 5.36
2059 2230 1.960689 GCCTGTTACTCAAAAGCCCAA 59.039 47.619 0.00 0.00 0.00 4.12
2060 2231 2.364002 GCCTGTTACTCAAAAGCCCAAA 59.636 45.455 0.00 0.00 0.00 3.28
2061 2232 3.181470 GCCTGTTACTCAAAAGCCCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
2062 2233 4.503123 GCCTGTTACTCAAAAGCCCAAAAT 60.503 41.667 0.00 0.00 0.00 1.82
2063 2234 5.279256 GCCTGTTACTCAAAAGCCCAAAATA 60.279 40.000 0.00 0.00 0.00 1.40
2064 2235 6.389906 CCTGTTACTCAAAAGCCCAAAATAG 58.610 40.000 0.00 0.00 0.00 1.73
2065 2236 6.208599 CCTGTTACTCAAAAGCCCAAAATAGA 59.791 38.462 0.00 0.00 0.00 1.98
2066 2237 7.214467 TGTTACTCAAAAGCCCAAAATAGAG 57.786 36.000 0.00 0.00 0.00 2.43
2067 2238 7.001674 TGTTACTCAAAAGCCCAAAATAGAGA 58.998 34.615 0.00 0.00 0.00 3.10
2068 2239 7.669722 TGTTACTCAAAAGCCCAAAATAGAGAT 59.330 33.333 0.00 0.00 0.00 2.75
2069 2240 6.521151 ACTCAAAAGCCCAAAATAGAGATG 57.479 37.500 0.00 0.00 0.00 2.90
2070 2241 5.105595 ACTCAAAAGCCCAAAATAGAGATGC 60.106 40.000 0.00 0.00 0.00 3.91
2071 2242 4.771577 TCAAAAGCCCAAAATAGAGATGCA 59.228 37.500 0.00 0.00 0.00 3.96
2072 2243 4.996788 AAAGCCCAAAATAGAGATGCAG 57.003 40.909 0.00 0.00 0.00 4.41
2073 2244 2.941480 AGCCCAAAATAGAGATGCAGG 58.059 47.619 0.00 0.00 0.00 4.85
2074 2245 1.339291 GCCCAAAATAGAGATGCAGGC 59.661 52.381 0.00 0.00 0.00 4.85
2075 2246 2.658285 CCCAAAATAGAGATGCAGGCA 58.342 47.619 0.00 0.00 0.00 4.75
2076 2247 3.025978 CCCAAAATAGAGATGCAGGCAA 58.974 45.455 0.00 0.00 0.00 4.52
2077 2248 3.448301 CCCAAAATAGAGATGCAGGCAAA 59.552 43.478 0.00 0.00 0.00 3.68
2078 2249 4.427312 CCAAAATAGAGATGCAGGCAAAC 58.573 43.478 0.00 0.00 0.00 2.93
2079 2250 4.082081 CCAAAATAGAGATGCAGGCAAACA 60.082 41.667 0.00 0.00 0.00 2.83
2080 2251 4.978083 AAATAGAGATGCAGGCAAACAG 57.022 40.909 0.00 0.00 0.00 3.16
2081 2252 2.408271 TAGAGATGCAGGCAAACAGG 57.592 50.000 0.00 0.00 0.00 4.00
2082 2253 0.694771 AGAGATGCAGGCAAACAGGA 59.305 50.000 0.00 0.00 0.00 3.86
2083 2254 1.074405 AGAGATGCAGGCAAACAGGAA 59.926 47.619 0.00 0.00 0.00 3.36
2084 2255 1.200948 GAGATGCAGGCAAACAGGAAC 59.799 52.381 0.00 0.00 0.00 3.62
2085 2256 0.961019 GATGCAGGCAAACAGGAACA 59.039 50.000 0.00 0.00 0.00 3.18
2086 2257 1.547372 GATGCAGGCAAACAGGAACAT 59.453 47.619 0.00 0.00 0.00 2.71
2087 2258 0.675083 TGCAGGCAAACAGGAACATG 59.325 50.000 0.00 0.00 0.00 3.21
2088 2259 0.037975 GCAGGCAAACAGGAACATGG 60.038 55.000 0.00 0.00 0.00 3.66
2089 2260 1.331214 CAGGCAAACAGGAACATGGT 58.669 50.000 0.00 0.00 0.00 3.55
2090 2261 1.688197 CAGGCAAACAGGAACATGGTT 59.312 47.619 0.00 0.00 0.00 3.67
2097 2268 4.654091 AACAGGAACATGGTTGAAGTTG 57.346 40.909 0.00 0.00 0.00 3.16
2098 2269 2.362077 ACAGGAACATGGTTGAAGTTGC 59.638 45.455 0.00 0.00 34.36 4.17
2099 2270 2.624838 CAGGAACATGGTTGAAGTTGCT 59.375 45.455 0.00 0.00 43.32 3.91
2100 2271 2.887152 AGGAACATGGTTGAAGTTGCTC 59.113 45.455 0.00 0.00 39.27 4.26
2101 2272 2.887152 GGAACATGGTTGAAGTTGCTCT 59.113 45.455 0.00 0.00 31.91 4.09
2102 2273 3.319122 GGAACATGGTTGAAGTTGCTCTT 59.681 43.478 0.00 0.00 39.32 2.85
2103 2274 4.518970 GGAACATGGTTGAAGTTGCTCTTA 59.481 41.667 0.00 0.00 36.40 2.10
2104 2275 5.438761 AACATGGTTGAAGTTGCTCTTAC 57.561 39.130 0.00 0.00 36.40 2.34
2105 2276 4.460263 ACATGGTTGAAGTTGCTCTTACA 58.540 39.130 0.00 0.00 36.40 2.41
2106 2277 4.516698 ACATGGTTGAAGTTGCTCTTACAG 59.483 41.667 0.00 0.00 36.40 2.74
2107 2278 4.415881 TGGTTGAAGTTGCTCTTACAGA 57.584 40.909 0.00 0.00 36.40 3.41
2108 2279 4.973168 TGGTTGAAGTTGCTCTTACAGAT 58.027 39.130 0.00 0.00 36.40 2.90
2109 2280 5.376625 TGGTTGAAGTTGCTCTTACAGATT 58.623 37.500 0.00 0.00 36.40 2.40
2110 2281 5.827797 TGGTTGAAGTTGCTCTTACAGATTT 59.172 36.000 0.00 0.00 36.40 2.17
2111 2282 6.321181 TGGTTGAAGTTGCTCTTACAGATTTT 59.679 34.615 0.00 0.00 36.40 1.82
2112 2283 6.858478 GGTTGAAGTTGCTCTTACAGATTTTC 59.142 38.462 0.00 0.00 36.40 2.29
2113 2284 7.417612 GTTGAAGTTGCTCTTACAGATTTTCA 58.582 34.615 0.00 0.00 36.40 2.69
2114 2285 7.750229 TGAAGTTGCTCTTACAGATTTTCAT 57.250 32.000 0.00 0.00 36.40 2.57
2115 2286 8.846943 TGAAGTTGCTCTTACAGATTTTCATA 57.153 30.769 0.00 0.00 36.40 2.15
2116 2287 8.721478 TGAAGTTGCTCTTACAGATTTTCATAC 58.279 33.333 0.00 0.00 36.40 2.39
2117 2288 8.854614 AAGTTGCTCTTACAGATTTTCATACT 57.145 30.769 0.00 0.00 34.23 2.12
2118 2289 8.854614 AGTTGCTCTTACAGATTTTCATACTT 57.145 30.769 0.00 0.00 0.00 2.24
2119 2290 8.940952 AGTTGCTCTTACAGATTTTCATACTTC 58.059 33.333 0.00 0.00 0.00 3.01
2120 2291 8.940952 GTTGCTCTTACAGATTTTCATACTTCT 58.059 33.333 0.00 0.00 0.00 2.85
2121 2292 9.507329 TTGCTCTTACAGATTTTCATACTTCTT 57.493 29.630 0.00 0.00 0.00 2.52
2122 2293 9.507329 TGCTCTTACAGATTTTCATACTTCTTT 57.493 29.630 0.00 0.00 0.00 2.52
2136 2307 9.621629 TTCATACTTCTTTTACCAAACTCAAGA 57.378 29.630 0.00 0.00 0.00 3.02
2137 2308 9.793259 TCATACTTCTTTTACCAAACTCAAGAT 57.207 29.630 0.00 0.00 0.00 2.40
2138 2309 9.831737 CATACTTCTTTTACCAAACTCAAGATG 57.168 33.333 0.00 0.00 0.00 2.90
2139 2310 6.739112 ACTTCTTTTACCAAACTCAAGATGC 58.261 36.000 0.00 0.00 0.00 3.91
2140 2311 6.321181 ACTTCTTTTACCAAACTCAAGATGCA 59.679 34.615 0.00 0.00 0.00 3.96
2141 2312 6.899393 TCTTTTACCAAACTCAAGATGCAT 57.101 33.333 0.00 0.00 0.00 3.96
2142 2313 6.680810 TCTTTTACCAAACTCAAGATGCATG 58.319 36.000 2.46 0.00 0.00 4.06
2143 2314 6.265196 TCTTTTACCAAACTCAAGATGCATGT 59.735 34.615 2.46 0.00 0.00 3.21
2144 2315 3.928727 ACCAAACTCAAGATGCATGTG 57.071 42.857 2.46 1.68 0.00 3.21
2145 2316 3.225104 ACCAAACTCAAGATGCATGTGT 58.775 40.909 2.46 0.00 0.00 3.72
2146 2317 3.638160 ACCAAACTCAAGATGCATGTGTT 59.362 39.130 2.46 1.78 36.40 3.32
2147 2318 4.826733 ACCAAACTCAAGATGCATGTGTTA 59.173 37.500 2.46 0.00 34.46 2.41
2148 2319 5.048504 ACCAAACTCAAGATGCATGTGTTAG 60.049 40.000 2.46 1.13 34.46 2.34
2149 2320 5.048504 CCAAACTCAAGATGCATGTGTTAGT 60.049 40.000 2.46 1.83 34.46 2.24
2150 2321 6.441274 CAAACTCAAGATGCATGTGTTAGTT 58.559 36.000 2.46 8.33 34.46 2.24
2151 2322 6.639632 AACTCAAGATGCATGTGTTAGTTT 57.360 33.333 2.46 0.00 33.97 2.66
2152 2323 6.639632 ACTCAAGATGCATGTGTTAGTTTT 57.360 33.333 2.46 0.00 0.00 2.43
2153 2324 7.042797 ACTCAAGATGCATGTGTTAGTTTTT 57.957 32.000 2.46 0.00 0.00 1.94
2181 2352 9.787435 TTTTTGAGGTTCTGTATATGTGTTAGT 57.213 29.630 0.00 0.00 0.00 2.24
2182 2353 9.787435 TTTTGAGGTTCTGTATATGTGTTAGTT 57.213 29.630 0.00 0.00 0.00 2.24
2212 2383 6.203808 ACGAAGTACTATGTCTTACATGCA 57.796 37.500 0.00 0.00 41.94 3.96
2213 2384 6.806751 ACGAAGTACTATGTCTTACATGCAT 58.193 36.000 0.00 0.00 41.94 3.96
2214 2385 6.697455 ACGAAGTACTATGTCTTACATGCATG 59.303 38.462 25.09 25.09 41.94 4.06
2215 2386 6.918022 CGAAGTACTATGTCTTACATGCATGA 59.082 38.462 32.75 13.72 39.53 3.07
2216 2387 7.596621 CGAAGTACTATGTCTTACATGCATGAT 59.403 37.037 32.75 18.51 39.53 2.45
2217 2388 9.265901 GAAGTACTATGTCTTACATGCATGATT 57.734 33.333 32.75 14.25 39.53 2.57
2218 2389 9.618890 AAGTACTATGTCTTACATGCATGATTT 57.381 29.630 32.75 13.48 39.53 2.17
2219 2390 9.618890 AGTACTATGTCTTACATGCATGATTTT 57.381 29.630 32.75 13.10 39.53 1.82
2222 2393 9.618890 ACTATGTCTTACATGCATGATTTTAGT 57.381 29.630 32.75 21.90 39.53 2.24
2226 2397 9.665719 TGTCTTACATGCATGATTTTAGTTAGA 57.334 29.630 32.75 13.72 0.00 2.10
2234 2405 7.999699 GCATGATTTTAGTTAGATACATGCG 57.000 36.000 0.00 0.00 45.51 4.73
2235 2406 7.796838 GCATGATTTTAGTTAGATACATGCGA 58.203 34.615 0.00 0.00 45.51 5.10
2236 2407 7.742089 GCATGATTTTAGTTAGATACATGCGAC 59.258 37.037 0.00 0.00 45.51 5.19
2237 2408 8.982685 CATGATTTTAGTTAGATACATGCGACT 58.017 33.333 0.00 0.00 0.00 4.18
2238 2409 8.942338 TGATTTTAGTTAGATACATGCGACTT 57.058 30.769 0.00 0.00 0.00 3.01
2239 2410 9.378551 TGATTTTAGTTAGATACATGCGACTTT 57.621 29.630 0.00 0.00 0.00 2.66
2240 2411 9.638300 GATTTTAGTTAGATACATGCGACTTTG 57.362 33.333 0.00 0.00 0.00 2.77
2241 2412 8.766000 TTTTAGTTAGATACATGCGACTTTGA 57.234 30.769 0.00 0.00 0.00 2.69
2242 2413 8.942338 TTTAGTTAGATACATGCGACTTTGAT 57.058 30.769 0.00 0.00 0.00 2.57
2243 2414 6.834959 AGTTAGATACATGCGACTTTGATG 57.165 37.500 0.00 0.00 0.00 3.07
2244 2415 6.573434 AGTTAGATACATGCGACTTTGATGA 58.427 36.000 0.00 0.00 0.00 2.92
2245 2416 7.212976 AGTTAGATACATGCGACTTTGATGAT 58.787 34.615 0.00 0.00 0.00 2.45
2246 2417 7.712639 AGTTAGATACATGCGACTTTGATGATT 59.287 33.333 0.00 0.00 0.00 2.57
2247 2418 6.932356 AGATACATGCGACTTTGATGATTT 57.068 33.333 0.00 0.00 0.00 2.17
2248 2419 7.325660 AGATACATGCGACTTTGATGATTTT 57.674 32.000 0.00 0.00 0.00 1.82
2249 2420 7.765307 AGATACATGCGACTTTGATGATTTTT 58.235 30.769 0.00 0.00 0.00 1.94
2250 2421 8.892723 AGATACATGCGACTTTGATGATTTTTA 58.107 29.630 0.00 0.00 0.00 1.52
2251 2422 9.669353 GATACATGCGACTTTGATGATTTTTAT 57.331 29.630 0.00 0.00 0.00 1.40
2254 2425 9.853555 ACATGCGACTTTGATGATTTTTATAAA 57.146 25.926 0.00 0.00 0.00 1.40
2296 2467 5.745312 ACATATGACCTTTCACTGAGTCA 57.255 39.130 10.38 2.93 42.95 3.41
2297 2468 5.482908 ACATATGACCTTTCACTGAGTCAC 58.517 41.667 10.38 0.00 41.69 3.67
2298 2469 5.247110 ACATATGACCTTTCACTGAGTCACT 59.753 40.000 10.38 0.00 41.69 3.41
2299 2470 6.437477 ACATATGACCTTTCACTGAGTCACTA 59.563 38.462 10.38 0.00 41.69 2.74
2300 2471 7.124901 ACATATGACCTTTCACTGAGTCACTAT 59.875 37.037 10.38 1.51 41.69 2.12
2301 2472 5.139435 TGACCTTTCACTGAGTCACTATG 57.861 43.478 0.00 0.00 34.44 2.23
2302 2473 4.588951 TGACCTTTCACTGAGTCACTATGT 59.411 41.667 0.00 0.00 34.44 2.29
2303 2474 5.140747 ACCTTTCACTGAGTCACTATGTC 57.859 43.478 0.00 0.00 0.00 3.06
2304 2475 4.588951 ACCTTTCACTGAGTCACTATGTCA 59.411 41.667 0.00 0.00 0.00 3.58
2305 2476 5.247110 ACCTTTCACTGAGTCACTATGTCAT 59.753 40.000 0.00 0.00 0.00 3.06
2306 2477 6.437477 ACCTTTCACTGAGTCACTATGTCATA 59.563 38.462 0.00 0.00 0.00 2.15
2307 2478 6.754209 CCTTTCACTGAGTCACTATGTCATAC 59.246 42.308 0.00 0.00 0.00 2.39
2308 2479 7.363355 CCTTTCACTGAGTCACTATGTCATACT 60.363 40.741 0.00 0.00 0.00 2.12
2309 2480 8.575649 TTTCACTGAGTCACTATGTCATACTA 57.424 34.615 0.00 0.00 0.00 1.82
2310 2481 7.793927 TCACTGAGTCACTATGTCATACTAG 57.206 40.000 0.00 0.00 0.00 2.57
2311 2482 7.339482 TCACTGAGTCACTATGTCATACTAGT 58.661 38.462 0.00 0.00 0.00 2.57
2312 2483 8.483758 TCACTGAGTCACTATGTCATACTAGTA 58.516 37.037 4.77 4.77 0.00 1.82
2313 2484 8.552865 CACTGAGTCACTATGTCATACTAGTAC 58.447 40.741 4.31 0.00 0.00 2.73
2314 2485 8.265764 ACTGAGTCACTATGTCATACTAGTACA 58.734 37.037 4.31 1.67 0.00 2.90
2315 2486 9.110502 CTGAGTCACTATGTCATACTAGTACAA 57.889 37.037 4.31 0.00 0.00 2.41
2316 2487 9.628500 TGAGTCACTATGTCATACTAGTACAAT 57.372 33.333 4.31 0.00 0.00 2.71
2317 2488 9.885934 GAGTCACTATGTCATACTAGTACAATG 57.114 37.037 4.31 0.98 0.00 2.82
2318 2489 8.353684 AGTCACTATGTCATACTAGTACAATGC 58.646 37.037 4.31 0.00 0.00 3.56
2319 2490 7.595502 GTCACTATGTCATACTAGTACAATGCC 59.404 40.741 4.31 0.00 0.00 4.40
2320 2491 6.868864 CACTATGTCATACTAGTACAATGCCC 59.131 42.308 4.31 0.00 0.00 5.36
2321 2492 4.316205 TGTCATACTAGTACAATGCCCG 57.684 45.455 4.31 0.00 0.00 6.13
2322 2493 3.702548 TGTCATACTAGTACAATGCCCGT 59.297 43.478 4.31 0.00 0.00 5.28
2323 2494 4.049186 GTCATACTAGTACAATGCCCGTG 58.951 47.826 4.31 0.00 0.00 4.94
2324 2495 2.589798 TACTAGTACAATGCCCGTGC 57.410 50.000 0.00 0.00 38.26 5.34
2325 2496 0.459585 ACTAGTACAATGCCCGTGCG 60.460 55.000 0.00 0.00 41.78 5.34
2326 2497 0.459585 CTAGTACAATGCCCGTGCGT 60.460 55.000 0.00 0.00 41.78 5.24
2345 2516 4.002797 GCCACGGGCTCTTGAAAT 57.997 55.556 7.58 0.00 46.69 2.17
2346 2517 3.168773 GCCACGGGCTCTTGAAATA 57.831 52.632 7.58 0.00 46.69 1.40
2347 2518 1.017387 GCCACGGGCTCTTGAAATAG 58.983 55.000 7.58 0.00 46.69 1.73
2348 2519 1.679032 GCCACGGGCTCTTGAAATAGT 60.679 52.381 7.58 0.00 46.69 2.12
2349 2520 2.711542 CCACGGGCTCTTGAAATAGTT 58.288 47.619 0.00 0.00 0.00 2.24
2350 2521 3.081804 CCACGGGCTCTTGAAATAGTTT 58.918 45.455 0.00 0.00 0.00 2.66
2351 2522 3.119849 CCACGGGCTCTTGAAATAGTTTG 60.120 47.826 0.00 0.00 0.00 2.93
2352 2523 2.488153 ACGGGCTCTTGAAATAGTTTGC 59.512 45.455 0.00 0.00 0.00 3.68
2353 2524 2.487762 CGGGCTCTTGAAATAGTTTGCA 59.512 45.455 0.00 0.00 0.00 4.08
2354 2525 3.057596 CGGGCTCTTGAAATAGTTTGCAA 60.058 43.478 0.00 0.00 0.00 4.08
2355 2526 4.488879 GGGCTCTTGAAATAGTTTGCAAG 58.511 43.478 0.00 0.00 39.17 4.01
2356 2527 4.218417 GGGCTCTTGAAATAGTTTGCAAGA 59.782 41.667 8.47 8.47 43.00 3.02
2394 2565 7.754069 AATGCATGTTAAATTTCACATACGG 57.246 32.000 15.75 7.15 32.16 4.02
2395 2566 6.502136 TGCATGTTAAATTTCACATACGGA 57.498 33.333 15.75 5.57 32.16 4.69
2396 2567 6.318628 TGCATGTTAAATTTCACATACGGAC 58.681 36.000 15.75 6.31 32.16 4.79
2397 2568 6.072452 TGCATGTTAAATTTCACATACGGACA 60.072 34.615 15.75 8.26 32.16 4.02
2398 2569 6.804295 GCATGTTAAATTTCACATACGGACAA 59.196 34.615 15.75 0.00 32.16 3.18
2399 2570 7.487829 GCATGTTAAATTTCACATACGGACAAT 59.512 33.333 15.75 0.00 32.16 2.71
2400 2571 9.995957 CATGTTAAATTTCACATACGGACAATA 57.004 29.630 15.75 0.00 32.16 1.90
2406 2577 9.997482 AAATTTCACATACGGACAATATAACAC 57.003 29.630 0.00 0.00 0.00 3.32
2407 2578 8.725405 ATTTCACATACGGACAATATAACACA 57.275 30.769 0.00 0.00 0.00 3.72
2408 2579 7.764695 TTCACATACGGACAATATAACACAG 57.235 36.000 0.00 0.00 0.00 3.66
2409 2580 7.102847 TCACATACGGACAATATAACACAGA 57.897 36.000 0.00 0.00 0.00 3.41
2410 2581 6.976349 TCACATACGGACAATATAACACAGAC 59.024 38.462 0.00 0.00 0.00 3.51
2411 2582 6.754675 CACATACGGACAATATAACACAGACA 59.245 38.462 0.00 0.00 0.00 3.41
2412 2583 7.438160 CACATACGGACAATATAACACAGACAT 59.562 37.037 0.00 0.00 0.00 3.06
2413 2584 8.635328 ACATACGGACAATATAACACAGACATA 58.365 33.333 0.00 0.00 0.00 2.29
2414 2585 9.471084 CATACGGACAATATAACACAGACATAA 57.529 33.333 0.00 0.00 0.00 1.90
2416 2587 8.958119 ACGGACAATATAACACAGACATAATT 57.042 30.769 0.00 0.00 0.00 1.40
2473 2644 8.848948 AAATTGCCAAAAAGAAAAATTAACGG 57.151 26.923 0.00 0.00 0.00 4.44
2474 2645 5.411083 TGCCAAAAAGAAAAATTAACGGC 57.589 34.783 0.00 0.00 36.35 5.68
2475 2646 4.876107 TGCCAAAAAGAAAAATTAACGGCA 59.124 33.333 0.00 0.00 43.16 5.69
2476 2647 5.529060 TGCCAAAAAGAAAAATTAACGGCAT 59.471 32.000 0.00 0.00 40.68 4.40
2477 2648 5.850653 GCCAAAAAGAAAAATTAACGGCATG 59.149 36.000 0.00 0.00 35.86 4.06
2478 2649 6.512578 GCCAAAAAGAAAAATTAACGGCATGT 60.513 34.615 0.00 0.00 35.86 3.21
2479 2650 7.068955 CCAAAAAGAAAAATTAACGGCATGTC 58.931 34.615 0.00 0.00 0.00 3.06
2480 2651 6.779115 AAAAGAAAAATTAACGGCATGTCC 57.221 33.333 0.00 0.00 0.00 4.02
2481 2652 5.461032 AAGAAAAATTAACGGCATGTCCA 57.539 34.783 6.92 0.00 34.01 4.02
2482 2653 5.659440 AGAAAAATTAACGGCATGTCCAT 57.341 34.783 6.92 0.00 34.01 3.41
2483 2654 5.410067 AGAAAAATTAACGGCATGTCCATG 58.590 37.500 2.86 2.86 41.60 3.66
2484 2655 4.799564 AAAATTAACGGCATGTCCATGT 57.200 36.364 8.91 0.00 40.80 3.21
2485 2656 5.906113 AAAATTAACGGCATGTCCATGTA 57.094 34.783 8.91 0.00 40.80 2.29
2486 2657 5.906113 AAATTAACGGCATGTCCATGTAA 57.094 34.783 8.91 0.94 40.80 2.41
2487 2658 4.893424 ATTAACGGCATGTCCATGTAAC 57.107 40.909 8.91 0.26 40.80 2.50
2488 2659 2.192664 AACGGCATGTCCATGTAACA 57.807 45.000 8.91 1.12 40.80 2.41
2489 2660 2.192664 ACGGCATGTCCATGTAACAA 57.807 45.000 8.91 0.00 40.80 2.83
2490 2661 2.509569 ACGGCATGTCCATGTAACAAA 58.490 42.857 8.91 0.00 40.80 2.83
2491 2662 2.227865 ACGGCATGTCCATGTAACAAAC 59.772 45.455 8.91 0.00 40.80 2.93
2492 2663 2.487762 CGGCATGTCCATGTAACAAACT 59.512 45.455 8.91 0.00 40.80 2.66
2493 2664 3.057596 CGGCATGTCCATGTAACAAACTT 60.058 43.478 8.91 0.00 40.80 2.66
2494 2665 4.155099 CGGCATGTCCATGTAACAAACTTA 59.845 41.667 8.91 0.00 40.80 2.24
2495 2666 5.335269 CGGCATGTCCATGTAACAAACTTAA 60.335 40.000 8.91 0.00 40.80 1.85
2496 2667 6.624861 CGGCATGTCCATGTAACAAACTTAAT 60.625 38.462 8.91 0.00 40.80 1.40
2497 2668 6.531240 GGCATGTCCATGTAACAAACTTAATG 59.469 38.462 8.91 0.00 40.80 1.90
2498 2669 6.531240 GCATGTCCATGTAACAAACTTAATGG 59.469 38.462 8.91 0.00 40.80 3.16
2499 2670 7.576666 GCATGTCCATGTAACAAACTTAATGGA 60.577 37.037 8.91 0.00 40.89 3.41
2500 2671 7.447374 TGTCCATGTAACAAACTTAATGGAG 57.553 36.000 2.51 0.00 43.09 3.86
2501 2672 7.001674 TGTCCATGTAACAAACTTAATGGAGT 58.998 34.615 2.51 0.00 43.09 3.85
2502 2673 7.504238 TGTCCATGTAACAAACTTAATGGAGTT 59.496 33.333 2.51 0.00 43.09 3.01
2503 2674 8.021396 GTCCATGTAACAAACTTAATGGAGTTC 58.979 37.037 2.51 0.00 43.09 3.01
2504 2675 7.175990 TCCATGTAACAAACTTAATGGAGTTCC 59.824 37.037 0.00 0.00 38.86 3.62
2564 2735 9.444600 AGGTTATACGCTTAAGAAATTCTTTCA 57.555 29.630 13.89 0.71 42.10 2.69
2565 2736 9.486857 GGTTATACGCTTAAGAAATTCTTTCAC 57.513 33.333 13.89 2.97 42.10 3.18
2581 2752 9.840427 AATTCTTTCACAATATACGGAAAGTTG 57.160 29.630 16.26 0.00 44.01 3.16
2582 2753 7.972832 TCTTTCACAATATACGGAAAGTTGT 57.027 32.000 16.26 0.00 44.01 3.32
2583 2754 8.025243 TCTTTCACAATATACGGAAAGTTGTC 57.975 34.615 16.26 0.00 44.01 3.18
2584 2755 7.876068 TCTTTCACAATATACGGAAAGTTGTCT 59.124 33.333 16.26 0.00 44.01 3.41
2585 2756 7.972832 TTCACAATATACGGAAAGTTGTCTT 57.027 32.000 0.00 0.00 31.19 3.01
2586 2757 7.972832 TCACAATATACGGAAAGTTGTCTTT 57.027 32.000 0.00 0.00 45.24 2.52
2587 2758 9.491675 TTCACAATATACGGAAAGTTGTCTTTA 57.508 29.630 0.00 0.00 42.99 1.85
2588 2759 9.146984 TCACAATATACGGAAAGTTGTCTTTAG 57.853 33.333 0.00 0.00 42.99 1.85
2589 2760 7.903431 CACAATATACGGAAAGTTGTCTTTAGC 59.097 37.037 0.00 0.00 42.99 3.09
2590 2761 7.822822 ACAATATACGGAAAGTTGTCTTTAGCT 59.177 33.333 0.00 0.00 42.99 3.32
2591 2762 8.665685 CAATATACGGAAAGTTGTCTTTAGCTT 58.334 33.333 0.00 0.00 42.99 3.74
2592 2763 6.723131 ATACGGAAAGTTGTCTTTAGCTTC 57.277 37.500 0.00 0.00 42.99 3.86
2593 2764 4.448210 ACGGAAAGTTGTCTTTAGCTTCA 58.552 39.130 0.00 0.00 42.99 3.02
2594 2765 5.063880 ACGGAAAGTTGTCTTTAGCTTCAT 58.936 37.500 0.00 0.00 42.99 2.57
2595 2766 5.531287 ACGGAAAGTTGTCTTTAGCTTCATT 59.469 36.000 0.00 0.00 42.99 2.57
2596 2767 6.080406 CGGAAAGTTGTCTTTAGCTTCATTC 58.920 40.000 0.00 0.00 42.99 2.67
2597 2768 6.382608 GGAAAGTTGTCTTTAGCTTCATTCC 58.617 40.000 0.00 0.00 42.99 3.01
2598 2769 5.966742 AAGTTGTCTTTAGCTTCATTCCC 57.033 39.130 0.00 0.00 0.00 3.97
2599 2770 4.985538 AGTTGTCTTTAGCTTCATTCCCA 58.014 39.130 0.00 0.00 0.00 4.37
2600 2771 4.762251 AGTTGTCTTTAGCTTCATTCCCAC 59.238 41.667 0.00 0.00 0.00 4.61
2601 2772 3.334691 TGTCTTTAGCTTCATTCCCACG 58.665 45.455 0.00 0.00 0.00 4.94
2602 2773 3.007506 TGTCTTTAGCTTCATTCCCACGA 59.992 43.478 0.00 0.00 0.00 4.35
2603 2774 4.192317 GTCTTTAGCTTCATTCCCACGAT 58.808 43.478 0.00 0.00 0.00 3.73
2604 2775 4.034510 GTCTTTAGCTTCATTCCCACGATG 59.965 45.833 0.00 0.00 0.00 3.84
2605 2776 3.627395 TTAGCTTCATTCCCACGATGT 57.373 42.857 0.00 0.00 0.00 3.06
2606 2777 2.496899 AGCTTCATTCCCACGATGTT 57.503 45.000 0.00 0.00 0.00 2.71
2607 2778 2.795329 AGCTTCATTCCCACGATGTTT 58.205 42.857 0.00 0.00 0.00 2.83
2608 2779 3.157087 AGCTTCATTCCCACGATGTTTT 58.843 40.909 0.00 0.00 0.00 2.43
2609 2780 4.331968 AGCTTCATTCCCACGATGTTTTA 58.668 39.130 0.00 0.00 0.00 1.52
2610 2781 4.396166 AGCTTCATTCCCACGATGTTTTAG 59.604 41.667 0.00 0.00 0.00 1.85
2611 2782 4.662145 CTTCATTCCCACGATGTTTTAGC 58.338 43.478 0.00 0.00 0.00 3.09
2612 2783 3.680490 TCATTCCCACGATGTTTTAGCA 58.320 40.909 0.00 0.00 0.00 3.49
2613 2784 4.075682 TCATTCCCACGATGTTTTAGCAA 58.924 39.130 0.00 0.00 0.00 3.91
2614 2785 4.155826 TCATTCCCACGATGTTTTAGCAAG 59.844 41.667 0.00 0.00 0.00 4.01
2615 2786 3.134574 TCCCACGATGTTTTAGCAAGT 57.865 42.857 0.00 0.00 0.00 3.16
2616 2787 4.274602 TCCCACGATGTTTTAGCAAGTA 57.725 40.909 0.00 0.00 0.00 2.24
2617 2788 4.839121 TCCCACGATGTTTTAGCAAGTAT 58.161 39.130 0.00 0.00 0.00 2.12
2618 2789 5.979993 TCCCACGATGTTTTAGCAAGTATA 58.020 37.500 0.00 0.00 0.00 1.47
2619 2790 6.408035 TCCCACGATGTTTTAGCAAGTATAA 58.592 36.000 0.00 0.00 0.00 0.98
2620 2791 7.051623 TCCCACGATGTTTTAGCAAGTATAAT 58.948 34.615 0.00 0.00 0.00 1.28
2621 2792 8.205512 TCCCACGATGTTTTAGCAAGTATAATA 58.794 33.333 0.00 0.00 0.00 0.98
2622 2793 8.832521 CCCACGATGTTTTAGCAAGTATAATAA 58.167 33.333 0.00 0.00 0.00 1.40
2636 2807 9.840427 GCAAGTATAATAAAAACTGCTTTCTCA 57.160 29.630 0.00 0.00 0.00 3.27
2646 2817 6.749923 AAACTGCTTTCTCAACTCATATCC 57.250 37.500 0.00 0.00 0.00 2.59
2647 2818 5.426689 ACTGCTTTCTCAACTCATATCCA 57.573 39.130 0.00 0.00 0.00 3.41
2648 2819 5.999044 ACTGCTTTCTCAACTCATATCCAT 58.001 37.500 0.00 0.00 0.00 3.41
2649 2820 6.054295 ACTGCTTTCTCAACTCATATCCATC 58.946 40.000 0.00 0.00 0.00 3.51
2650 2821 5.371526 TGCTTTCTCAACTCATATCCATCC 58.628 41.667 0.00 0.00 0.00 3.51
2651 2822 5.131642 TGCTTTCTCAACTCATATCCATCCT 59.868 40.000 0.00 0.00 0.00 3.24
2652 2823 5.469421 GCTTTCTCAACTCATATCCATCCTG 59.531 44.000 0.00 0.00 0.00 3.86
2653 2824 4.613925 TCTCAACTCATATCCATCCTGC 57.386 45.455 0.00 0.00 0.00 4.85
2654 2825 3.969312 TCTCAACTCATATCCATCCTGCA 59.031 43.478 0.00 0.00 0.00 4.41
2655 2826 4.063689 CTCAACTCATATCCATCCTGCAC 58.936 47.826 0.00 0.00 0.00 4.57
2656 2827 3.455543 TCAACTCATATCCATCCTGCACA 59.544 43.478 0.00 0.00 0.00 4.57
2657 2828 4.080413 TCAACTCATATCCATCCTGCACAA 60.080 41.667 0.00 0.00 0.00 3.33
2658 2829 4.508551 ACTCATATCCATCCTGCACAAA 57.491 40.909 0.00 0.00 0.00 2.83
2659 2830 4.202441 ACTCATATCCATCCTGCACAAAC 58.798 43.478 0.00 0.00 0.00 2.93
2660 2831 4.201657 CTCATATCCATCCTGCACAAACA 58.798 43.478 0.00 0.00 0.00 2.83
2661 2832 4.598022 TCATATCCATCCTGCACAAACAA 58.402 39.130 0.00 0.00 0.00 2.83
2662 2833 5.202765 TCATATCCATCCTGCACAAACAAT 58.797 37.500 0.00 0.00 0.00 2.71
2663 2834 6.363882 TCATATCCATCCTGCACAAACAATA 58.636 36.000 0.00 0.00 0.00 1.90
2664 2835 7.005902 TCATATCCATCCTGCACAAACAATAT 58.994 34.615 0.00 0.00 0.00 1.28
2665 2836 8.162746 TCATATCCATCCTGCACAAACAATATA 58.837 33.333 0.00 0.00 0.00 0.86
2666 2837 8.963725 CATATCCATCCTGCACAAACAATATAT 58.036 33.333 0.00 0.00 0.00 0.86
2667 2838 6.638096 TCCATCCTGCACAAACAATATATG 57.362 37.500 0.00 0.00 0.00 1.78
2668 2839 6.128486 TCCATCCTGCACAAACAATATATGT 58.872 36.000 0.00 0.00 46.82 2.29
2669 2840 7.286313 TCCATCCTGCACAAACAATATATGTA 58.714 34.615 0.00 0.00 42.99 2.29
2670 2841 7.445096 TCCATCCTGCACAAACAATATATGTAG 59.555 37.037 0.00 0.00 42.99 2.74
2671 2842 7.229306 CCATCCTGCACAAACAATATATGTAGT 59.771 37.037 0.00 0.00 42.99 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.541588 GCGGCAAAGAGGATTGTTCTT 59.458 47.619 0.00 0.00 36.49 2.52
8 9 1.577328 CGTGCGGCAAAGAGGATTGT 61.577 55.000 3.23 0.00 32.80 2.71
9 10 1.135315 CGTGCGGCAAAGAGGATTG 59.865 57.895 3.23 0.00 0.00 2.67
67 68 2.813908 GGATGGTCGCGCGAGTTT 60.814 61.111 35.75 20.46 0.00 2.66
207 210 3.900892 CGGTAGGCGGCTCGATGT 61.901 66.667 17.67 0.00 0.00 3.06
272 275 4.394712 CCTCCCAGGCGTGTGGAC 62.395 72.222 11.19 0.00 40.44 4.02
273 276 4.631740 TCCTCCCAGGCGTGTGGA 62.632 66.667 13.63 13.63 40.44 4.02
274 277 4.087892 CTCCTCCCAGGCGTGTGG 62.088 72.222 5.57 6.62 34.61 4.17
275 278 4.767255 GCTCCTCCCAGGCGTGTG 62.767 72.222 5.57 0.00 34.61 3.82
277 280 4.767255 GTGCTCCTCCCAGGCGTG 62.767 72.222 0.00 0.00 34.61 5.34
378 381 1.301677 CGAAGCCCTCCTTTGTGAGC 61.302 60.000 0.00 0.00 32.78 4.26
434 444 1.006102 CGTCGCAAACTGGAGGAGT 60.006 57.895 0.00 0.00 35.94 3.85
593 603 4.821589 CTGCGCCTCCCTTCCGTC 62.822 72.222 4.18 0.00 0.00 4.79
710 720 4.392921 TCATGTCTTCTTCCTTCGATCC 57.607 45.455 0.00 0.00 0.00 3.36
749 759 4.202151 GCCTCACAATAATCCCCAATGAAC 60.202 45.833 0.00 0.00 0.00 3.18
861 871 1.201414 CGTTTTATGACAACCAGGGCC 59.799 52.381 0.00 0.00 0.00 5.80
943 960 9.719355 AAAAACTACCACAAATTTGTTTCTCTT 57.281 25.926 21.10 7.62 39.91 2.85
1010 1027 0.907486 TGCCATCTTCCTCACCTGAG 59.093 55.000 0.00 0.00 41.71 3.35
1011 1028 1.280133 CTTGCCATCTTCCTCACCTGA 59.720 52.381 0.00 0.00 0.00 3.86
1012 1029 1.681166 CCTTGCCATCTTCCTCACCTG 60.681 57.143 0.00 0.00 0.00 4.00
1149 1195 6.599244 GGATAGATGTGTCCATGAAGAACAAA 59.401 38.462 0.26 0.00 34.08 2.83
1200 1246 3.260884 AGACTTCTTCACGGGCAAGATTA 59.739 43.478 1.27 0.00 29.89 1.75
1294 1376 4.881440 GATGCCTCCCATGCCGCA 62.881 66.667 0.00 0.00 33.29 5.69
1479 1579 3.219198 GACATTCCGCCCATGCCC 61.219 66.667 0.00 0.00 0.00 5.36
1584 1699 6.448369 TTTTCCTCCTCCTCTTCATTGTTA 57.552 37.500 0.00 0.00 0.00 2.41
1606 1729 1.751924 CTCCTCCTCCGAAGACGATTT 59.248 52.381 0.00 0.00 42.66 2.17
1633 1756 1.709578 TCATCCTCATCTTCCTCCGG 58.290 55.000 0.00 0.00 0.00 5.14
1686 1828 2.914214 CACAAAAGTTCACACCAACGTG 59.086 45.455 0.00 0.00 46.11 4.49
1687 1829 2.554893 ACACAAAAGTTCACACCAACGT 59.445 40.909 0.00 0.00 0.00 3.99
1824 1971 6.601741 TTCAAACATCAAAACAAAGGCATC 57.398 33.333 0.00 0.00 0.00 3.91
1828 1975 8.235905 ACACAAATTCAAACATCAAAACAAAGG 58.764 29.630 0.00 0.00 0.00 3.11
1842 1993 6.149973 TGTTGCATTTTGGACACAAATTCAAA 59.850 30.769 0.00 0.00 45.31 2.69
1844 1995 5.181009 TGTTGCATTTTGGACACAAATTCA 58.819 33.333 0.00 0.00 45.31 2.57
1845 1996 5.731599 TGTTGCATTTTGGACACAAATTC 57.268 34.783 0.00 0.00 45.31 2.17
1846 1997 7.094720 CCATATGTTGCATTTTGGACACAAATT 60.095 33.333 1.24 0.00 45.31 1.82
1847 1998 6.372103 CCATATGTTGCATTTTGGACACAAAT 59.628 34.615 1.24 0.00 45.31 2.32
1997 2166 1.062440 GGCGCTAAAAATGCATTTGCC 59.938 47.619 25.70 25.70 41.18 4.52
2040 2211 4.664150 TTTTGGGCTTTTGAGTAACAGG 57.336 40.909 0.00 0.00 0.00 4.00
2041 2212 7.174946 TCTCTATTTTGGGCTTTTGAGTAACAG 59.825 37.037 0.00 0.00 0.00 3.16
2042 2213 7.001674 TCTCTATTTTGGGCTTTTGAGTAACA 58.998 34.615 0.00 0.00 0.00 2.41
2043 2214 7.448748 TCTCTATTTTGGGCTTTTGAGTAAC 57.551 36.000 0.00 0.00 0.00 2.50
2044 2215 7.362920 GCATCTCTATTTTGGGCTTTTGAGTAA 60.363 37.037 0.00 0.00 0.00 2.24
2045 2216 6.095440 GCATCTCTATTTTGGGCTTTTGAGTA 59.905 38.462 0.00 0.00 0.00 2.59
2046 2217 5.105595 GCATCTCTATTTTGGGCTTTTGAGT 60.106 40.000 0.00 0.00 0.00 3.41
2047 2218 5.105635 TGCATCTCTATTTTGGGCTTTTGAG 60.106 40.000 0.00 0.00 0.00 3.02
2048 2219 4.771577 TGCATCTCTATTTTGGGCTTTTGA 59.228 37.500 0.00 0.00 0.00 2.69
2049 2220 5.075858 TGCATCTCTATTTTGGGCTTTTG 57.924 39.130 0.00 0.00 0.00 2.44
2050 2221 4.161001 CCTGCATCTCTATTTTGGGCTTTT 59.839 41.667 0.00 0.00 0.00 2.27
2051 2222 3.703052 CCTGCATCTCTATTTTGGGCTTT 59.297 43.478 0.00 0.00 0.00 3.51
2052 2223 3.294214 CCTGCATCTCTATTTTGGGCTT 58.706 45.455 0.00 0.00 0.00 4.35
2053 2224 2.941480 CCTGCATCTCTATTTTGGGCT 58.059 47.619 0.00 0.00 0.00 5.19
2054 2225 1.339291 GCCTGCATCTCTATTTTGGGC 59.661 52.381 0.00 0.00 0.00 5.36
2055 2226 2.658285 TGCCTGCATCTCTATTTTGGG 58.342 47.619 0.00 0.00 0.00 4.12
2056 2227 4.082081 TGTTTGCCTGCATCTCTATTTTGG 60.082 41.667 0.00 0.00 0.00 3.28
2057 2228 5.063180 TGTTTGCCTGCATCTCTATTTTG 57.937 39.130 0.00 0.00 0.00 2.44
2058 2229 4.159135 CCTGTTTGCCTGCATCTCTATTTT 59.841 41.667 0.00 0.00 0.00 1.82
2059 2230 3.698040 CCTGTTTGCCTGCATCTCTATTT 59.302 43.478 0.00 0.00 0.00 1.40
2060 2231 3.054139 TCCTGTTTGCCTGCATCTCTATT 60.054 43.478 0.00 0.00 0.00 1.73
2061 2232 2.507058 TCCTGTTTGCCTGCATCTCTAT 59.493 45.455 0.00 0.00 0.00 1.98
2062 2233 1.908619 TCCTGTTTGCCTGCATCTCTA 59.091 47.619 0.00 0.00 0.00 2.43
2063 2234 0.694771 TCCTGTTTGCCTGCATCTCT 59.305 50.000 0.00 0.00 0.00 3.10
2064 2235 1.200948 GTTCCTGTTTGCCTGCATCTC 59.799 52.381 0.00 0.00 0.00 2.75
2065 2236 1.251251 GTTCCTGTTTGCCTGCATCT 58.749 50.000 0.00 0.00 0.00 2.90
2066 2237 0.961019 TGTTCCTGTTTGCCTGCATC 59.039 50.000 0.00 0.00 0.00 3.91
2067 2238 1.274167 CATGTTCCTGTTTGCCTGCAT 59.726 47.619 0.00 0.00 0.00 3.96
2068 2239 0.675083 CATGTTCCTGTTTGCCTGCA 59.325 50.000 0.00 0.00 0.00 4.41
2069 2240 0.037975 CCATGTTCCTGTTTGCCTGC 60.038 55.000 0.00 0.00 0.00 4.85
2070 2241 1.331214 ACCATGTTCCTGTTTGCCTG 58.669 50.000 0.00 0.00 0.00 4.85
2071 2242 1.688197 CAACCATGTTCCTGTTTGCCT 59.312 47.619 0.00 0.00 0.00 4.75
2072 2243 1.686052 TCAACCATGTTCCTGTTTGCC 59.314 47.619 0.00 0.00 0.00 4.52
2073 2244 3.181476 ACTTCAACCATGTTCCTGTTTGC 60.181 43.478 0.00 0.00 0.00 3.68
2074 2245 4.654091 ACTTCAACCATGTTCCTGTTTG 57.346 40.909 0.00 0.00 0.00 2.93
2075 2246 4.680440 GCAACTTCAACCATGTTCCTGTTT 60.680 41.667 0.00 0.00 0.00 2.83
2076 2247 3.181476 GCAACTTCAACCATGTTCCTGTT 60.181 43.478 0.00 0.00 0.00 3.16
2077 2248 2.362077 GCAACTTCAACCATGTTCCTGT 59.638 45.455 0.00 0.00 0.00 4.00
2078 2249 2.624838 AGCAACTTCAACCATGTTCCTG 59.375 45.455 0.00 0.00 0.00 3.86
2079 2250 2.887152 GAGCAACTTCAACCATGTTCCT 59.113 45.455 0.00 0.00 0.00 3.36
2080 2251 2.887152 AGAGCAACTTCAACCATGTTCC 59.113 45.455 0.00 0.00 0.00 3.62
2081 2252 4.574599 AAGAGCAACTTCAACCATGTTC 57.425 40.909 0.00 0.00 32.91 3.18
2082 2253 4.887071 TGTAAGAGCAACTTCAACCATGTT 59.113 37.500 0.00 0.00 39.72 2.71
2083 2254 4.460263 TGTAAGAGCAACTTCAACCATGT 58.540 39.130 0.00 0.00 39.72 3.21
2084 2255 4.756642 TCTGTAAGAGCAACTTCAACCATG 59.243 41.667 0.00 0.00 38.67 3.66
2085 2256 4.973168 TCTGTAAGAGCAACTTCAACCAT 58.027 39.130 0.00 0.00 38.67 3.55
2086 2257 4.415881 TCTGTAAGAGCAACTTCAACCA 57.584 40.909 0.00 0.00 38.67 3.67
2110 2281 9.621629 TCTTGAGTTTGGTAAAAGAAGTATGAA 57.378 29.630 0.00 0.00 0.00 2.57
2111 2282 9.793259 ATCTTGAGTTTGGTAAAAGAAGTATGA 57.207 29.630 0.00 0.00 31.14 2.15
2112 2283 9.831737 CATCTTGAGTTTGGTAAAAGAAGTATG 57.168 33.333 0.00 0.00 31.14 2.39
2113 2284 8.515414 GCATCTTGAGTTTGGTAAAAGAAGTAT 58.485 33.333 0.00 0.00 31.14 2.12
2114 2285 7.500892 TGCATCTTGAGTTTGGTAAAAGAAGTA 59.499 33.333 0.00 0.00 31.14 2.24
2115 2286 6.321181 TGCATCTTGAGTTTGGTAAAAGAAGT 59.679 34.615 0.00 0.00 31.14 3.01
2116 2287 6.738114 TGCATCTTGAGTTTGGTAAAAGAAG 58.262 36.000 0.00 0.00 31.14 2.85
2117 2288 6.707440 TGCATCTTGAGTTTGGTAAAAGAA 57.293 33.333 0.00 0.00 31.14 2.52
2118 2289 6.265196 ACATGCATCTTGAGTTTGGTAAAAGA 59.735 34.615 0.00 0.00 0.00 2.52
2119 2290 6.364165 CACATGCATCTTGAGTTTGGTAAAAG 59.636 38.462 0.00 0.00 0.00 2.27
2120 2291 6.183360 ACACATGCATCTTGAGTTTGGTAAAA 60.183 34.615 11.10 0.00 0.00 1.52
2121 2292 5.301551 ACACATGCATCTTGAGTTTGGTAAA 59.698 36.000 11.10 0.00 0.00 2.01
2122 2293 4.826733 ACACATGCATCTTGAGTTTGGTAA 59.173 37.500 11.10 0.00 0.00 2.85
2123 2294 4.397420 ACACATGCATCTTGAGTTTGGTA 58.603 39.130 11.10 0.00 0.00 3.25
2124 2295 3.225104 ACACATGCATCTTGAGTTTGGT 58.775 40.909 11.10 0.00 0.00 3.67
2125 2296 3.928727 ACACATGCATCTTGAGTTTGG 57.071 42.857 11.10 0.00 0.00 3.28
2126 2297 6.005583 ACTAACACATGCATCTTGAGTTTG 57.994 37.500 11.10 9.51 31.71 2.93
2127 2298 6.639632 AACTAACACATGCATCTTGAGTTT 57.360 33.333 11.10 0.00 31.71 2.66
2128 2299 6.639632 AAACTAACACATGCATCTTGAGTT 57.360 33.333 11.10 8.84 33.45 3.01
2129 2300 6.639632 AAAACTAACACATGCATCTTGAGT 57.360 33.333 11.10 3.39 0.00 3.41
2155 2326 9.787435 ACTAACACATATACAGAACCTCAAAAA 57.213 29.630 0.00 0.00 0.00 1.94
2156 2327 9.787435 AACTAACACATATACAGAACCTCAAAA 57.213 29.630 0.00 0.00 0.00 2.44
2187 2358 7.191551 TGCATGTAAGACATAGTACTTCGTAC 58.808 38.462 0.00 6.46 36.53 3.67
2188 2359 7.324354 TGCATGTAAGACATAGTACTTCGTA 57.676 36.000 0.00 0.00 36.53 3.43
2189 2360 6.203808 TGCATGTAAGACATAGTACTTCGT 57.796 37.500 0.00 0.00 36.53 3.85
2190 2361 6.918022 TCATGCATGTAAGACATAGTACTTCG 59.082 38.462 25.43 0.00 36.53 3.79
2191 2362 8.824159 ATCATGCATGTAAGACATAGTACTTC 57.176 34.615 25.43 0.00 36.53 3.01
2192 2363 9.618890 AAATCATGCATGTAAGACATAGTACTT 57.381 29.630 25.43 0.05 36.53 2.24
2193 2364 9.618890 AAAATCATGCATGTAAGACATAGTACT 57.381 29.630 25.43 0.00 36.53 2.73
2196 2367 9.618890 ACTAAAATCATGCATGTAAGACATAGT 57.381 29.630 25.43 19.56 36.53 2.12
2200 2371 9.665719 TCTAACTAAAATCATGCATGTAAGACA 57.334 29.630 25.43 6.27 0.00 3.41
2211 2382 8.982685 AGTCGCATGTATCTAACTAAAATCATG 58.017 33.333 0.00 0.00 35.85 3.07
2212 2383 9.547753 AAGTCGCATGTATCTAACTAAAATCAT 57.452 29.630 0.00 0.00 0.00 2.45
2213 2384 8.942338 AAGTCGCATGTATCTAACTAAAATCA 57.058 30.769 0.00 0.00 0.00 2.57
2214 2385 9.638300 CAAAGTCGCATGTATCTAACTAAAATC 57.362 33.333 0.00 0.00 0.00 2.17
2215 2386 9.378551 TCAAAGTCGCATGTATCTAACTAAAAT 57.621 29.630 0.00 0.00 0.00 1.82
2216 2387 8.766000 TCAAAGTCGCATGTATCTAACTAAAA 57.234 30.769 0.00 0.00 0.00 1.52
2217 2388 8.817100 CATCAAAGTCGCATGTATCTAACTAAA 58.183 33.333 0.00 0.00 0.00 1.85
2218 2389 8.194769 TCATCAAAGTCGCATGTATCTAACTAA 58.805 33.333 0.00 0.00 0.00 2.24
2219 2390 7.712797 TCATCAAAGTCGCATGTATCTAACTA 58.287 34.615 0.00 0.00 0.00 2.24
2220 2391 6.573434 TCATCAAAGTCGCATGTATCTAACT 58.427 36.000 0.00 0.00 0.00 2.24
2221 2392 6.828502 TCATCAAAGTCGCATGTATCTAAC 57.171 37.500 0.00 0.00 0.00 2.34
2222 2393 8.437360 AAATCATCAAAGTCGCATGTATCTAA 57.563 30.769 0.00 0.00 0.00 2.10
2223 2394 8.437360 AAAATCATCAAAGTCGCATGTATCTA 57.563 30.769 0.00 0.00 0.00 1.98
2224 2395 6.932356 AAATCATCAAAGTCGCATGTATCT 57.068 33.333 0.00 0.00 0.00 1.98
2225 2396 7.975866 AAAAATCATCAAAGTCGCATGTATC 57.024 32.000 0.00 0.00 0.00 2.24
2228 2399 9.853555 TTTATAAAAATCATCAAAGTCGCATGT 57.146 25.926 0.00 0.00 0.00 3.21
2270 2441 9.147732 TGACTCAGTGAAAGGTCATATGTATAT 57.852 33.333 9.08 0.00 35.80 0.86
2271 2442 8.414003 GTGACTCAGTGAAAGGTCATATGTATA 58.586 37.037 14.63 0.00 40.16 1.47
2272 2443 7.124901 AGTGACTCAGTGAAAGGTCATATGTAT 59.875 37.037 14.63 0.00 40.16 2.29
2273 2444 6.437477 AGTGACTCAGTGAAAGGTCATATGTA 59.563 38.462 14.63 0.00 40.16 2.29
2274 2445 5.247110 AGTGACTCAGTGAAAGGTCATATGT 59.753 40.000 14.63 0.00 40.16 2.29
2275 2446 5.728471 AGTGACTCAGTGAAAGGTCATATG 58.272 41.667 14.63 0.00 40.16 1.78
2276 2447 7.124901 ACATAGTGACTCAGTGAAAGGTCATAT 59.875 37.037 14.63 10.28 40.16 1.78
2277 2448 6.437477 ACATAGTGACTCAGTGAAAGGTCATA 59.563 38.462 14.63 9.69 40.16 2.15
2278 2449 5.247110 ACATAGTGACTCAGTGAAAGGTCAT 59.753 40.000 14.63 8.27 40.16 3.06
2279 2450 4.588951 ACATAGTGACTCAGTGAAAGGTCA 59.411 41.667 9.08 9.08 36.52 4.02
2280 2451 5.140747 ACATAGTGACTCAGTGAAAGGTC 57.859 43.478 4.47 4.47 0.00 3.85
2281 2452 4.588951 TGACATAGTGACTCAGTGAAAGGT 59.411 41.667 0.00 0.00 0.00 3.50
2282 2453 5.139435 TGACATAGTGACTCAGTGAAAGG 57.861 43.478 0.00 0.00 0.00 3.11
2283 2454 7.542890 AGTATGACATAGTGACTCAGTGAAAG 58.457 38.462 1.83 0.00 0.00 2.62
2284 2455 7.468141 AGTATGACATAGTGACTCAGTGAAA 57.532 36.000 1.83 0.00 0.00 2.69
2285 2456 7.829706 ACTAGTATGACATAGTGACTCAGTGAA 59.170 37.037 12.29 0.00 31.09 3.18
2286 2457 7.339482 ACTAGTATGACATAGTGACTCAGTGA 58.661 38.462 12.29 0.00 31.09 3.41
2287 2458 7.561021 ACTAGTATGACATAGTGACTCAGTG 57.439 40.000 12.29 0.00 31.09 3.66
2288 2459 8.265764 TGTACTAGTATGACATAGTGACTCAGT 58.734 37.037 12.29 9.59 34.21 3.41
2289 2460 8.664211 TGTACTAGTATGACATAGTGACTCAG 57.336 38.462 12.29 4.68 34.21 3.35
2290 2461 9.628500 ATTGTACTAGTATGACATAGTGACTCA 57.372 33.333 12.29 5.04 34.21 3.41
2291 2462 9.885934 CATTGTACTAGTATGACATAGTGACTC 57.114 37.037 12.29 2.93 34.21 3.36
2292 2463 8.353684 GCATTGTACTAGTATGACATAGTGACT 58.646 37.037 12.29 3.78 34.21 3.41
2293 2464 7.595502 GGCATTGTACTAGTATGACATAGTGAC 59.404 40.741 12.29 8.36 34.21 3.67
2294 2465 7.255836 GGGCATTGTACTAGTATGACATAGTGA 60.256 40.741 11.28 0.00 34.21 3.41
2295 2466 6.868864 GGGCATTGTACTAGTATGACATAGTG 59.131 42.308 11.28 6.44 34.21 2.74
2296 2467 6.294564 CGGGCATTGTACTAGTATGACATAGT 60.295 42.308 11.28 7.90 36.28 2.12
2297 2468 6.093404 CGGGCATTGTACTAGTATGACATAG 58.907 44.000 11.28 3.22 0.00 2.23
2298 2469 5.537295 ACGGGCATTGTACTAGTATGACATA 59.463 40.000 11.28 0.00 0.00 2.29
2299 2470 4.344102 ACGGGCATTGTACTAGTATGACAT 59.656 41.667 11.28 0.00 0.00 3.06
2300 2471 3.702548 ACGGGCATTGTACTAGTATGACA 59.297 43.478 11.28 2.91 0.00 3.58
2301 2472 4.049186 CACGGGCATTGTACTAGTATGAC 58.951 47.826 5.75 3.55 0.00 3.06
2302 2473 3.491964 GCACGGGCATTGTACTAGTATGA 60.492 47.826 3.77 0.00 40.72 2.15
2303 2474 2.800544 GCACGGGCATTGTACTAGTATG 59.199 50.000 3.77 2.76 40.72 2.39
2304 2475 2.545113 CGCACGGGCATTGTACTAGTAT 60.545 50.000 11.77 0.00 41.24 2.12
2305 2476 1.202325 CGCACGGGCATTGTACTAGTA 60.202 52.381 11.77 0.00 41.24 1.82
2306 2477 0.459585 CGCACGGGCATTGTACTAGT 60.460 55.000 11.77 0.00 41.24 2.57
2307 2478 0.459585 ACGCACGGGCATTGTACTAG 60.460 55.000 11.77 0.00 41.24 2.57
2308 2479 0.037139 AACGCACGGGCATTGTACTA 60.037 50.000 11.77 0.00 41.24 1.82
2309 2480 1.302192 AACGCACGGGCATTGTACT 60.302 52.632 11.77 0.00 41.24 2.73
2310 2481 1.154301 CAACGCACGGGCATTGTAC 60.154 57.895 10.90 0.00 38.34 2.90
2311 2482 2.972144 GCAACGCACGGGCATTGTA 61.972 57.895 20.63 0.00 44.58 2.41
2312 2483 4.341502 GCAACGCACGGGCATTGT 62.342 61.111 20.63 0.74 44.58 2.71
2329 2500 2.403252 ACTATTTCAAGAGCCCGTGG 57.597 50.000 0.00 0.00 0.00 4.94
2330 2501 3.670627 GCAAACTATTTCAAGAGCCCGTG 60.671 47.826 0.00 0.00 0.00 4.94
2331 2502 2.488153 GCAAACTATTTCAAGAGCCCGT 59.512 45.455 0.00 0.00 0.00 5.28
2332 2503 2.487762 TGCAAACTATTTCAAGAGCCCG 59.512 45.455 0.00 0.00 0.00 6.13
2333 2504 4.218417 TCTTGCAAACTATTTCAAGAGCCC 59.782 41.667 0.00 0.00 39.70 5.19
2334 2505 5.376854 TCTTGCAAACTATTTCAAGAGCC 57.623 39.130 0.00 0.00 39.70 4.70
2368 2539 9.462174 CCGTATGTGAAATTTAACATGCATTAT 57.538 29.630 26.87 8.63 38.76 1.28
2369 2540 8.678199 TCCGTATGTGAAATTTAACATGCATTA 58.322 29.630 26.87 14.29 38.76 1.90
2370 2541 7.487829 GTCCGTATGTGAAATTTAACATGCATT 59.512 33.333 26.87 9.80 38.76 3.56
2371 2542 6.972328 GTCCGTATGTGAAATTTAACATGCAT 59.028 34.615 26.87 10.10 38.76 3.96
2372 2543 6.072452 TGTCCGTATGTGAAATTTAACATGCA 60.072 34.615 26.87 16.55 38.76 3.96
2373 2544 6.318628 TGTCCGTATGTGAAATTTAACATGC 58.681 36.000 25.63 23.28 37.57 4.06
2374 2545 8.909708 ATTGTCCGTATGTGAAATTTAACATG 57.090 30.769 25.63 13.23 37.57 3.21
2380 2551 9.997482 GTGTTATATTGTCCGTATGTGAAATTT 57.003 29.630 0.00 0.00 0.00 1.82
2381 2552 9.168451 TGTGTTATATTGTCCGTATGTGAAATT 57.832 29.630 0.00 0.00 0.00 1.82
2382 2553 8.725405 TGTGTTATATTGTCCGTATGTGAAAT 57.275 30.769 0.00 0.00 0.00 2.17
2383 2554 8.035984 TCTGTGTTATATTGTCCGTATGTGAAA 58.964 33.333 0.00 0.00 0.00 2.69
2384 2555 7.490079 GTCTGTGTTATATTGTCCGTATGTGAA 59.510 37.037 0.00 0.00 0.00 3.18
2385 2556 6.976349 GTCTGTGTTATATTGTCCGTATGTGA 59.024 38.462 0.00 0.00 0.00 3.58
2386 2557 6.754675 TGTCTGTGTTATATTGTCCGTATGTG 59.245 38.462 0.00 0.00 0.00 3.21
2387 2558 6.869695 TGTCTGTGTTATATTGTCCGTATGT 58.130 36.000 0.00 0.00 0.00 2.29
2388 2559 7.946655 ATGTCTGTGTTATATTGTCCGTATG 57.053 36.000 0.00 0.00 0.00 2.39
2391 2562 8.958119 AATTATGTCTGTGTTATATTGTCCGT 57.042 30.769 0.00 0.00 0.00 4.69
2447 2618 9.937175 CCGTTAATTTTTCTTTTTGGCAATTTA 57.063 25.926 0.00 0.00 0.00 1.40
2448 2619 7.433719 GCCGTTAATTTTTCTTTTTGGCAATTT 59.566 29.630 0.00 0.00 38.60 1.82
2449 2620 6.915300 GCCGTTAATTTTTCTTTTTGGCAATT 59.085 30.769 0.00 0.00 38.60 2.32
2450 2621 6.038714 TGCCGTTAATTTTTCTTTTTGGCAAT 59.961 30.769 0.00 0.00 44.96 3.56
2451 2622 5.354234 TGCCGTTAATTTTTCTTTTTGGCAA 59.646 32.000 0.00 0.00 44.96 4.52
2452 2623 4.876107 TGCCGTTAATTTTTCTTTTTGGCA 59.124 33.333 0.00 0.00 45.67 4.92
2453 2624 5.411083 TGCCGTTAATTTTTCTTTTTGGC 57.589 34.783 0.00 0.00 39.18 4.52
2454 2625 6.953843 ACATGCCGTTAATTTTTCTTTTTGG 58.046 32.000 0.00 0.00 0.00 3.28
2455 2626 7.068955 GGACATGCCGTTAATTTTTCTTTTTG 58.931 34.615 0.00 0.00 0.00 2.44
2456 2627 6.763610 TGGACATGCCGTTAATTTTTCTTTTT 59.236 30.769 0.00 0.00 40.66 1.94
2457 2628 6.284459 TGGACATGCCGTTAATTTTTCTTTT 58.716 32.000 0.00 0.00 40.66 2.27
2458 2629 5.848406 TGGACATGCCGTTAATTTTTCTTT 58.152 33.333 0.00 0.00 40.66 2.52
2459 2630 5.461032 TGGACATGCCGTTAATTTTTCTT 57.539 34.783 0.00 0.00 40.66 2.52
2460 2631 5.047377 ACATGGACATGCCGTTAATTTTTCT 60.047 36.000 11.96 0.00 42.39 2.52
2461 2632 5.167845 ACATGGACATGCCGTTAATTTTTC 58.832 37.500 11.96 0.00 42.39 2.29
2462 2633 5.146010 ACATGGACATGCCGTTAATTTTT 57.854 34.783 11.96 0.00 42.39 1.94
2463 2634 4.799564 ACATGGACATGCCGTTAATTTT 57.200 36.364 11.96 0.00 42.39 1.82
2464 2635 5.184096 TGTTACATGGACATGCCGTTAATTT 59.816 36.000 11.96 0.00 42.39 1.82
2465 2636 4.702612 TGTTACATGGACATGCCGTTAATT 59.297 37.500 11.96 0.00 42.39 1.40
2466 2637 4.265893 TGTTACATGGACATGCCGTTAAT 58.734 39.130 11.96 0.00 42.39 1.40
2467 2638 3.676093 TGTTACATGGACATGCCGTTAA 58.324 40.909 11.96 1.39 42.39 2.01
2468 2639 3.336138 TGTTACATGGACATGCCGTTA 57.664 42.857 11.96 0.00 42.39 3.18
2469 2640 2.192664 TGTTACATGGACATGCCGTT 57.807 45.000 11.96 0.00 42.39 4.44
2470 2641 2.192664 TTGTTACATGGACATGCCGT 57.807 45.000 11.96 0.00 42.39 5.68
2471 2642 2.487762 AGTTTGTTACATGGACATGCCG 59.512 45.455 11.96 0.00 42.39 5.69
2472 2643 4.519540 AAGTTTGTTACATGGACATGCC 57.480 40.909 11.96 0.00 42.39 4.40
2473 2644 6.531240 CCATTAAGTTTGTTACATGGACATGC 59.469 38.462 11.96 0.00 42.39 4.06
2474 2645 7.825681 TCCATTAAGTTTGTTACATGGACATG 58.174 34.615 10.57 10.57 44.15 3.21
2475 2646 7.669722 ACTCCATTAAGTTTGTTACATGGACAT 59.330 33.333 0.00 0.00 36.16 3.06
2476 2647 7.001674 ACTCCATTAAGTTTGTTACATGGACA 58.998 34.615 0.00 0.00 36.16 4.02
2477 2648 7.448748 ACTCCATTAAGTTTGTTACATGGAC 57.551 36.000 0.00 0.00 36.16 4.02
2478 2649 7.175990 GGAACTCCATTAAGTTTGTTACATGGA 59.824 37.037 0.00 2.27 39.55 3.41
2479 2650 7.040062 TGGAACTCCATTAAGTTTGTTACATGG 60.040 37.037 0.00 0.00 42.01 3.66
2480 2651 7.881142 TGGAACTCCATTAAGTTTGTTACATG 58.119 34.615 0.00 0.00 42.01 3.21
2481 2652 8.357402 GTTGGAACTCCATTAAGTTTGTTACAT 58.643 33.333 0.00 0.00 46.97 2.29
2482 2653 7.558444 AGTTGGAACTCCATTAAGTTTGTTACA 59.442 33.333 0.00 0.00 46.97 2.41
2483 2654 7.937649 AGTTGGAACTCCATTAAGTTTGTTAC 58.062 34.615 0.00 0.00 46.97 2.50
2484 2655 9.629878 TTAGTTGGAACTCCATTAAGTTTGTTA 57.370 29.630 0.00 0.00 46.97 2.41
2485 2656 8.528044 TTAGTTGGAACTCCATTAAGTTTGTT 57.472 30.769 0.00 0.00 46.97 2.83
2486 2657 8.410912 GTTTAGTTGGAACTCCATTAAGTTTGT 58.589 33.333 0.00 0.00 46.97 2.83
2487 2658 8.410141 TGTTTAGTTGGAACTCCATTAAGTTTG 58.590 33.333 0.00 0.00 46.97 2.93
2488 2659 8.528044 TGTTTAGTTGGAACTCCATTAAGTTT 57.472 30.769 0.00 0.00 46.97 2.66
2489 2660 8.706322 ATGTTTAGTTGGAACTCCATTAAGTT 57.294 30.769 0.00 0.00 46.97 2.66
2490 2661 8.164070 AGATGTTTAGTTGGAACTCCATTAAGT 58.836 33.333 0.00 0.00 46.97 2.24
2491 2662 8.567285 AGATGTTTAGTTGGAACTCCATTAAG 57.433 34.615 0.00 0.00 46.97 1.85
2555 2726 9.840427 CAACTTTCCGTATATTGTGAAAGAATT 57.160 29.630 19.22 8.09 43.96 2.17
2556 2727 9.010029 ACAACTTTCCGTATATTGTGAAAGAAT 57.990 29.630 19.22 10.13 43.96 2.40
2557 2728 8.385898 ACAACTTTCCGTATATTGTGAAAGAA 57.614 30.769 19.22 0.00 43.96 2.52
2558 2729 7.876068 AGACAACTTTCCGTATATTGTGAAAGA 59.124 33.333 19.22 0.00 43.96 2.52
2559 2730 8.029642 AGACAACTTTCCGTATATTGTGAAAG 57.970 34.615 14.22 14.22 45.70 2.62
2560 2731 7.972832 AGACAACTTTCCGTATATTGTGAAA 57.027 32.000 0.00 0.00 33.76 2.69
2561 2732 7.972832 AAGACAACTTTCCGTATATTGTGAA 57.027 32.000 0.00 0.00 33.76 3.18
2562 2733 7.972832 AAAGACAACTTTCCGTATATTGTGA 57.027 32.000 0.00 0.00 41.80 3.58
2563 2734 7.903431 GCTAAAGACAACTTTCCGTATATTGTG 59.097 37.037 0.00 0.00 44.02 3.33
2564 2735 7.822822 AGCTAAAGACAACTTTCCGTATATTGT 59.177 33.333 0.00 0.00 44.02 2.71
2565 2736 8.197988 AGCTAAAGACAACTTTCCGTATATTG 57.802 34.615 0.00 0.00 44.02 1.90
2566 2737 8.788325 AAGCTAAAGACAACTTTCCGTATATT 57.212 30.769 0.00 0.00 44.02 1.28
2567 2738 8.038944 TGAAGCTAAAGACAACTTTCCGTATAT 58.961 33.333 0.00 0.00 44.02 0.86
2568 2739 7.380536 TGAAGCTAAAGACAACTTTCCGTATA 58.619 34.615 0.00 0.00 44.02 1.47
2569 2740 6.228258 TGAAGCTAAAGACAACTTTCCGTAT 58.772 36.000 0.00 0.00 44.02 3.06
2570 2741 5.603596 TGAAGCTAAAGACAACTTTCCGTA 58.396 37.500 0.00 0.00 44.02 4.02
2571 2742 4.448210 TGAAGCTAAAGACAACTTTCCGT 58.552 39.130 0.00 0.00 44.02 4.69
2572 2743 5.613358 ATGAAGCTAAAGACAACTTTCCG 57.387 39.130 0.00 0.00 44.02 4.30
2573 2744 6.382608 GGAATGAAGCTAAAGACAACTTTCC 58.617 40.000 0.00 0.00 44.02 3.13
2574 2745 6.016276 TGGGAATGAAGCTAAAGACAACTTTC 60.016 38.462 0.00 0.00 44.02 2.62
2575 2746 5.833131 TGGGAATGAAGCTAAAGACAACTTT 59.167 36.000 0.00 0.00 46.36 2.66
2576 2747 5.241728 GTGGGAATGAAGCTAAAGACAACTT 59.758 40.000 0.00 0.00 38.05 2.66
2577 2748 4.762251 GTGGGAATGAAGCTAAAGACAACT 59.238 41.667 0.00 0.00 0.00 3.16
2578 2749 4.378459 CGTGGGAATGAAGCTAAAGACAAC 60.378 45.833 0.00 0.00 0.00 3.32
2579 2750 3.751175 CGTGGGAATGAAGCTAAAGACAA 59.249 43.478 0.00 0.00 0.00 3.18
2580 2751 3.007506 TCGTGGGAATGAAGCTAAAGACA 59.992 43.478 0.00 0.00 0.00 3.41
2581 2752 3.596214 TCGTGGGAATGAAGCTAAAGAC 58.404 45.455 0.00 0.00 0.00 3.01
2582 2753 3.973206 TCGTGGGAATGAAGCTAAAGA 57.027 42.857 0.00 0.00 0.00 2.52
2583 2754 3.941483 ACATCGTGGGAATGAAGCTAAAG 59.059 43.478 0.00 0.00 0.00 1.85
2584 2755 3.950397 ACATCGTGGGAATGAAGCTAAA 58.050 40.909 0.00 0.00 0.00 1.85
2585 2756 3.627395 ACATCGTGGGAATGAAGCTAA 57.373 42.857 0.00 0.00 0.00 3.09
2586 2757 3.627395 AACATCGTGGGAATGAAGCTA 57.373 42.857 0.00 0.00 0.00 3.32
2587 2758 2.496899 AACATCGTGGGAATGAAGCT 57.503 45.000 0.00 0.00 0.00 3.74
2588 2759 3.575965 AAAACATCGTGGGAATGAAGC 57.424 42.857 0.00 0.00 0.00 3.86
2589 2760 4.155826 TGCTAAAACATCGTGGGAATGAAG 59.844 41.667 0.00 0.00 0.00 3.02
2590 2761 4.075682 TGCTAAAACATCGTGGGAATGAA 58.924 39.130 0.00 0.00 0.00 2.57
2591 2762 3.680490 TGCTAAAACATCGTGGGAATGA 58.320 40.909 0.00 0.00 0.00 2.57
2592 2763 4.082787 ACTTGCTAAAACATCGTGGGAATG 60.083 41.667 0.00 0.00 0.00 2.67
2593 2764 4.079253 ACTTGCTAAAACATCGTGGGAAT 58.921 39.130 0.00 0.00 0.00 3.01
2594 2765 3.482436 ACTTGCTAAAACATCGTGGGAA 58.518 40.909 0.00 0.00 0.00 3.97
2595 2766 3.134574 ACTTGCTAAAACATCGTGGGA 57.865 42.857 0.00 0.00 0.00 4.37
2596 2767 6.671614 TTATACTTGCTAAAACATCGTGGG 57.328 37.500 0.00 0.00 0.00 4.61
2610 2781 9.840427 TGAGAAAGCAGTTTTTATTATACTTGC 57.160 29.630 0.00 0.00 0.00 4.01
2620 2791 8.730680 GGATATGAGTTGAGAAAGCAGTTTTTA 58.269 33.333 0.00 0.00 0.00 1.52
2621 2792 7.231317 TGGATATGAGTTGAGAAAGCAGTTTTT 59.769 33.333 0.00 0.00 0.00 1.94
2622 2793 6.716628 TGGATATGAGTTGAGAAAGCAGTTTT 59.283 34.615 0.00 0.00 0.00 2.43
2623 2794 6.240894 TGGATATGAGTTGAGAAAGCAGTTT 58.759 36.000 0.00 0.00 0.00 2.66
2624 2795 5.809001 TGGATATGAGTTGAGAAAGCAGTT 58.191 37.500 0.00 0.00 0.00 3.16
2625 2796 5.426689 TGGATATGAGTTGAGAAAGCAGT 57.573 39.130 0.00 0.00 0.00 4.40
2626 2797 5.469421 GGATGGATATGAGTTGAGAAAGCAG 59.531 44.000 0.00 0.00 0.00 4.24
2627 2798 5.131642 AGGATGGATATGAGTTGAGAAAGCA 59.868 40.000 0.00 0.00 0.00 3.91
2628 2799 5.469421 CAGGATGGATATGAGTTGAGAAAGC 59.531 44.000 0.00 0.00 0.00 3.51
2629 2800 5.469421 GCAGGATGGATATGAGTTGAGAAAG 59.531 44.000 0.00 0.00 35.86 2.62
2630 2801 5.104402 TGCAGGATGGATATGAGTTGAGAAA 60.104 40.000 0.00 0.00 35.86 2.52
2631 2802 4.409901 TGCAGGATGGATATGAGTTGAGAA 59.590 41.667 0.00 0.00 35.86 2.87
2632 2803 3.969312 TGCAGGATGGATATGAGTTGAGA 59.031 43.478 0.00 0.00 35.86 3.27
2633 2804 4.063689 GTGCAGGATGGATATGAGTTGAG 58.936 47.826 0.00 0.00 39.99 3.02
2634 2805 3.455543 TGTGCAGGATGGATATGAGTTGA 59.544 43.478 0.00 0.00 39.99 3.18
2635 2806 3.812262 TGTGCAGGATGGATATGAGTTG 58.188 45.455 0.00 0.00 39.99 3.16
2636 2807 4.508551 TTGTGCAGGATGGATATGAGTT 57.491 40.909 0.00 0.00 39.99 3.01
2637 2808 4.202441 GTTTGTGCAGGATGGATATGAGT 58.798 43.478 0.00 0.00 39.99 3.41
2638 2809 4.201657 TGTTTGTGCAGGATGGATATGAG 58.798 43.478 0.00 0.00 39.99 2.90
2639 2810 4.233632 TGTTTGTGCAGGATGGATATGA 57.766 40.909 0.00 0.00 39.99 2.15
2640 2811 4.987408 TTGTTTGTGCAGGATGGATATG 57.013 40.909 0.00 0.00 39.99 1.78
2641 2812 8.963725 CATATATTGTTTGTGCAGGATGGATAT 58.036 33.333 0.00 0.00 39.99 1.63
2642 2813 7.944000 ACATATATTGTTTGTGCAGGATGGATA 59.056 33.333 0.00 0.00 34.46 2.59
2643 2814 6.779049 ACATATATTGTTTGTGCAGGATGGAT 59.221 34.615 0.00 0.00 34.46 3.41
2644 2815 6.128486 ACATATATTGTTTGTGCAGGATGGA 58.872 36.000 0.00 0.00 33.74 3.41
2645 2816 6.395426 ACATATATTGTTTGTGCAGGATGG 57.605 37.500 0.00 0.00 33.74 3.51
2646 2817 8.158169 ACTACATATATTGTTTGTGCAGGATG 57.842 34.615 0.00 0.00 39.87 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.