Multiple sequence alignment - TraesCS7D01G224500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G224500 chr7D 100.000 3340 0 0 1 3340 184938606 184935267 0.000000e+00 6168.0
1 TraesCS7D01G224500 chr7D 92.593 486 34 2 1 486 517274375 517273892 0.000000e+00 697.0
2 TraesCS7D01G224500 chr7D 85.294 68 9 1 1142 1209 163568127 163568061 5.980000e-08 69.4
3 TraesCS7D01G224500 chr7A 91.270 2394 143 33 989 3340 191909853 191907484 0.000000e+00 3203.0
4 TraesCS7D01G224500 chr7A 85.938 64 4 5 1148 1209 164789567 164789507 2.780000e-06 63.9
5 TraesCS7D01G224500 chr7B 92.217 1619 85 17 1755 3340 154772227 154770617 0.000000e+00 2254.0
6 TraesCS7D01G224500 chr7B 94.480 779 37 2 987 1759 154773028 154772250 0.000000e+00 1195.0
7 TraesCS7D01G224500 chr7B 95.710 373 16 0 489 861 154773960 154773588 4.770000e-168 601.0
8 TraesCS7D01G224500 chr7B 86.364 66 4 5 1148 1211 125769691 125769629 2.150000e-07 67.6
9 TraesCS7D01G224500 chr7B 100.000 28 0 0 963 990 154773238 154773211 6.000000e-03 52.8
10 TraesCS7D01G224500 chr5D 94.824 483 25 0 4 486 461928598 461928116 0.000000e+00 754.0
11 TraesCS7D01G224500 chr5D 94.770 478 25 0 9 486 461934400 461933923 0.000000e+00 745.0
12 TraesCS7D01G224500 chr5D 92.813 487 35 0 1 487 195727041 195727527 0.000000e+00 706.0
13 TraesCS7D01G224500 chr5D 92.798 486 34 1 1 486 158210095 158209611 0.000000e+00 702.0
14 TraesCS7D01G224500 chr5D 93.277 476 31 1 9 484 169912582 169912108 0.000000e+00 701.0
15 TraesCS7D01G224500 chr2D 93.018 487 30 4 1 486 572090096 572089613 0.000000e+00 708.0
16 TraesCS7D01G224500 chr3D 92.261 491 38 0 1 491 415830407 415830897 0.000000e+00 697.0
17 TraesCS7D01G224500 chr3D 92.276 492 37 1 1 491 415964698 415965189 0.000000e+00 697.0
18 TraesCS7D01G224500 chr3D 88.235 68 8 0 856 923 416298115 416298048 7.680000e-12 82.4
19 TraesCS7D01G224500 chr5B 81.343 134 23 2 489 622 333923992 333923861 1.270000e-19 108.0
20 TraesCS7D01G224500 chr6A 86.765 68 9 0 856 923 271798020 271798087 3.570000e-10 76.8
21 TraesCS7D01G224500 chr6A 84.286 70 6 5 1140 1207 506399394 506399460 2.780000e-06 63.9
22 TraesCS7D01G224500 chr2B 85.294 68 10 0 856 923 671911790 671911857 1.660000e-08 71.3
23 TraesCS7D01G224500 chr2B 84.058 69 9 2 856 923 410436249 410436182 7.730000e-07 65.8
24 TraesCS7D01G224500 chr6D 84.722 72 6 5 1140 1209 365441589 365441657 2.150000e-07 67.6
25 TraesCS7D01G224500 chr6B 84.286 70 6 5 1142 1209 550201665 550201731 2.780000e-06 63.9
26 TraesCS7D01G224500 chr5A 100.000 28 0 0 2399 2426 575907410 575907383 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G224500 chr7D 184935267 184938606 3339 True 6168.0 6168 100.00000 1 3340 1 chr7D.!!$R2 3339
1 TraesCS7D01G224500 chr7A 191907484 191909853 2369 True 3203.0 3203 91.27000 989 3340 1 chr7A.!!$R2 2351
2 TraesCS7D01G224500 chr7B 154770617 154773960 3343 True 1025.7 2254 95.60175 489 3340 4 chr7B.!!$R2 2851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.105607 AGATCTCGGTTAGGGGGTCC 60.106 60.0 0.00 0.00 0.00 4.46 F
100 101 0.107557 AAACGAGGGACACGGTGTTT 60.108 50.0 15.94 4.47 44.58 2.83 F
122 123 0.118346 TCAGGTTTGGGCCCTCTCTA 59.882 55.0 25.70 0.00 0.00 2.43 F
463 464 0.167689 GGAGACGACGTGGTGAGTAC 59.832 60.0 8.32 0.00 0.00 2.73 F
613 614 0.178301 GAAGAACTCCGGTGATCCCC 59.822 60.0 11.17 0.00 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2439 0.394488 TCTACAGAGCTGGAGGGACG 60.394 60.000 9.73 0.00 41.86 4.79 R
2035 2572 0.678048 GACACCCTGGCATCTTGACC 60.678 60.000 0.00 0.00 0.00 4.02 R
2184 2721 1.897615 GCCATGGCCATGCTCTCTC 60.898 63.158 36.08 17.42 37.49 3.20 R
2208 2745 0.530744 TCCTGAACCGGTCGATTGAG 59.469 55.000 8.04 0.00 0.00 3.02 R
2490 3061 0.823356 TGCAGACAGAAGGGTTTGCC 60.823 55.000 6.40 0.00 45.38 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.679153 ACCATTGTCGGTGTCAAAACC 59.321 47.619 0.00 0.00 38.07 3.27
29 30 4.150994 GGTGTCAAAACCGGCAGA 57.849 55.556 0.00 0.00 0.00 4.26
30 31 2.641197 GGTGTCAAAACCGGCAGAT 58.359 52.632 0.00 0.00 0.00 2.90
31 32 0.521735 GGTGTCAAAACCGGCAGATC 59.478 55.000 0.00 0.00 0.00 2.75
32 33 1.523758 GTGTCAAAACCGGCAGATCT 58.476 50.000 0.00 0.00 0.00 2.75
33 34 1.464997 GTGTCAAAACCGGCAGATCTC 59.535 52.381 0.00 0.00 0.00 2.75
34 35 0.721718 GTCAAAACCGGCAGATCTCG 59.278 55.000 0.00 0.00 0.00 4.04
40 41 1.364171 CCGGCAGATCTCGGTTAGG 59.636 63.158 13.39 0.00 41.23 2.69
41 42 1.364171 CGGCAGATCTCGGTTAGGG 59.636 63.158 0.00 0.00 0.00 3.53
42 43 1.749033 GGCAGATCTCGGTTAGGGG 59.251 63.158 0.00 0.00 0.00 4.79
43 44 1.749033 GCAGATCTCGGTTAGGGGG 59.251 63.158 0.00 0.00 0.00 5.40
44 45 1.049289 GCAGATCTCGGTTAGGGGGT 61.049 60.000 0.00 0.00 0.00 4.95
45 46 1.041437 CAGATCTCGGTTAGGGGGTC 58.959 60.000 0.00 0.00 0.00 4.46
46 47 0.105607 AGATCTCGGTTAGGGGGTCC 60.106 60.000 0.00 0.00 0.00 4.46
47 48 1.074699 ATCTCGGTTAGGGGGTCCC 60.075 63.158 0.00 0.00 45.90 4.46
57 58 4.394712 GGGGTCCCGAGCTGTGTG 62.395 72.222 0.48 0.00 0.00 3.82
58 59 3.626924 GGGTCCCGAGCTGTGTGT 61.627 66.667 0.00 0.00 0.00 3.72
59 60 2.048127 GGTCCCGAGCTGTGTGTC 60.048 66.667 0.00 0.00 0.00 3.67
60 61 2.574955 GGTCCCGAGCTGTGTGTCT 61.575 63.158 0.00 0.00 0.00 3.41
61 62 1.367840 GTCCCGAGCTGTGTGTCTT 59.632 57.895 0.00 0.00 0.00 3.01
62 63 0.601558 GTCCCGAGCTGTGTGTCTTA 59.398 55.000 0.00 0.00 0.00 2.10
63 64 0.888619 TCCCGAGCTGTGTGTCTTAG 59.111 55.000 0.00 0.00 0.00 2.18
64 65 0.108615 CCCGAGCTGTGTGTCTTAGG 60.109 60.000 0.00 0.00 0.00 2.69
65 66 0.888619 CCGAGCTGTGTGTCTTAGGA 59.111 55.000 0.00 0.00 0.00 2.94
66 67 1.478510 CCGAGCTGTGTGTCTTAGGAT 59.521 52.381 0.00 0.00 0.00 3.24
67 68 2.480416 CCGAGCTGTGTGTCTTAGGATC 60.480 54.545 0.00 0.00 0.00 3.36
68 69 2.792890 CGAGCTGTGTGTCTTAGGATCG 60.793 54.545 0.00 0.00 0.00 3.69
69 70 2.423892 GAGCTGTGTGTCTTAGGATCGA 59.576 50.000 0.00 0.00 0.00 3.59
70 71 3.027412 AGCTGTGTGTCTTAGGATCGAT 58.973 45.455 0.00 0.00 0.00 3.59
71 72 3.119291 GCTGTGTGTCTTAGGATCGATG 58.881 50.000 0.54 0.00 0.00 3.84
72 73 3.711086 CTGTGTGTCTTAGGATCGATGG 58.289 50.000 0.54 0.00 0.00 3.51
73 74 2.430694 TGTGTGTCTTAGGATCGATGGG 59.569 50.000 0.54 0.00 0.00 4.00
74 75 2.431057 GTGTGTCTTAGGATCGATGGGT 59.569 50.000 0.54 0.00 0.00 4.51
75 76 3.635373 GTGTGTCTTAGGATCGATGGGTA 59.365 47.826 0.54 0.00 0.00 3.69
76 77 4.098960 GTGTGTCTTAGGATCGATGGGTAA 59.901 45.833 0.54 0.00 0.00 2.85
77 78 4.098960 TGTGTCTTAGGATCGATGGGTAAC 59.901 45.833 0.54 0.00 0.00 2.50
78 79 4.098960 GTGTCTTAGGATCGATGGGTAACA 59.901 45.833 0.54 0.00 39.74 2.41
79 80 4.341235 TGTCTTAGGATCGATGGGTAACAG 59.659 45.833 0.54 0.00 39.74 3.16
80 81 3.895656 TCTTAGGATCGATGGGTAACAGG 59.104 47.826 0.54 0.00 39.74 4.00
81 82 2.471815 AGGATCGATGGGTAACAGGA 57.528 50.000 0.54 0.00 39.74 3.86
82 83 2.759355 AGGATCGATGGGTAACAGGAA 58.241 47.619 0.54 0.00 39.74 3.36
83 84 3.112263 AGGATCGATGGGTAACAGGAAA 58.888 45.455 0.54 0.00 39.74 3.13
84 85 3.118371 AGGATCGATGGGTAACAGGAAAC 60.118 47.826 0.54 0.00 39.74 2.78
85 86 2.373540 TCGATGGGTAACAGGAAACG 57.626 50.000 0.00 0.00 39.74 3.60
86 87 1.894466 TCGATGGGTAACAGGAAACGA 59.106 47.619 0.00 0.00 39.74 3.85
87 88 2.094390 TCGATGGGTAACAGGAAACGAG 60.094 50.000 0.00 0.00 39.74 4.18
88 89 2.629051 GATGGGTAACAGGAAACGAGG 58.371 52.381 0.00 0.00 39.74 4.63
89 90 0.688487 TGGGTAACAGGAAACGAGGG 59.312 55.000 0.00 0.00 39.74 4.30
90 91 0.978907 GGGTAACAGGAAACGAGGGA 59.021 55.000 0.00 0.00 39.74 4.20
91 92 1.338484 GGGTAACAGGAAACGAGGGAC 60.338 57.143 0.00 0.00 39.74 4.46
92 93 1.345415 GGTAACAGGAAACGAGGGACA 59.655 52.381 0.00 0.00 0.00 4.02
93 94 2.410939 GTAACAGGAAACGAGGGACAC 58.589 52.381 0.00 0.00 0.00 3.67
97 98 1.666872 GGAAACGAGGGACACGGTG 60.667 63.158 6.58 6.58 44.58 4.94
98 99 1.068585 GAAACGAGGGACACGGTGT 59.931 57.895 14.66 14.66 44.58 4.16
99 100 0.531311 GAAACGAGGGACACGGTGTT 60.531 55.000 15.94 0.00 44.58 3.32
100 101 0.107557 AAACGAGGGACACGGTGTTT 60.108 50.000 15.94 4.47 44.58 2.83
101 102 0.752054 AACGAGGGACACGGTGTTTA 59.248 50.000 15.94 0.00 43.10 2.01
102 103 1.538849 AACGAGGGACACGGTGTTTAC 60.539 52.381 15.94 8.88 43.10 2.01
103 104 0.316204 CGAGGGACACGGTGTTTACT 59.684 55.000 15.94 13.25 39.10 2.24
104 105 1.668047 CGAGGGACACGGTGTTTACTC 60.668 57.143 15.94 19.19 39.10 2.59
105 106 1.342174 GAGGGACACGGTGTTTACTCA 59.658 52.381 23.67 0.00 30.44 3.41
106 107 1.343465 AGGGACACGGTGTTTACTCAG 59.657 52.381 15.94 0.00 0.00 3.35
107 108 1.607251 GGGACACGGTGTTTACTCAGG 60.607 57.143 15.94 0.00 0.00 3.86
108 109 1.069668 GGACACGGTGTTTACTCAGGT 59.930 52.381 15.94 0.00 0.00 4.00
109 110 2.484241 GGACACGGTGTTTACTCAGGTT 60.484 50.000 15.94 0.00 0.00 3.50
110 111 3.200483 GACACGGTGTTTACTCAGGTTT 58.800 45.455 15.94 0.00 0.00 3.27
111 112 2.940410 ACACGGTGTTTACTCAGGTTTG 59.060 45.455 8.21 0.00 0.00 2.93
112 113 2.289547 CACGGTGTTTACTCAGGTTTGG 59.710 50.000 0.00 0.00 0.00 3.28
113 114 1.877443 CGGTGTTTACTCAGGTTTGGG 59.123 52.381 0.00 0.00 0.00 4.12
114 115 1.611977 GGTGTTTACTCAGGTTTGGGC 59.388 52.381 0.00 0.00 0.00 5.36
115 116 1.611977 GTGTTTACTCAGGTTTGGGCC 59.388 52.381 0.00 0.00 0.00 5.80
116 117 1.254026 GTTTACTCAGGTTTGGGCCC 58.746 55.000 17.59 17.59 0.00 5.80
117 118 1.154430 TTTACTCAGGTTTGGGCCCT 58.846 50.000 25.70 0.00 0.00 5.19
118 119 0.696501 TTACTCAGGTTTGGGCCCTC 59.303 55.000 25.70 13.35 0.00 4.30
119 120 0.178873 TACTCAGGTTTGGGCCCTCT 60.179 55.000 25.70 12.37 0.00 3.69
120 121 1.301293 CTCAGGTTTGGGCCCTCTC 59.699 63.158 25.70 12.58 0.00 3.20
121 122 1.151810 TCAGGTTTGGGCCCTCTCT 60.152 57.895 25.70 12.36 0.00 3.10
122 123 0.118346 TCAGGTTTGGGCCCTCTCTA 59.882 55.000 25.70 0.00 0.00 2.43
123 124 0.991920 CAGGTTTGGGCCCTCTCTAA 59.008 55.000 25.70 5.13 0.00 2.10
124 125 1.065126 CAGGTTTGGGCCCTCTCTAAG 60.065 57.143 25.70 3.62 0.00 2.18
125 126 1.203440 AGGTTTGGGCCCTCTCTAAGA 60.203 52.381 25.70 0.00 0.00 2.10
126 127 1.210722 GGTTTGGGCCCTCTCTAAGAG 59.789 57.143 25.70 0.00 41.96 2.85
140 141 7.337480 CTCTCTAAGAGGTAAAACCCTACTC 57.663 44.000 0.83 0.00 39.75 2.59
141 142 6.193504 TCTCTAAGAGGTAAAACCCTACTCC 58.806 44.000 0.00 0.00 39.75 3.85
142 143 6.010918 TCTCTAAGAGGTAAAACCCTACTCCT 60.011 42.308 0.00 0.00 39.75 3.69
143 144 5.956563 TCTAAGAGGTAAAACCCTACTCCTG 59.043 44.000 0.00 0.00 39.75 3.86
144 145 2.838813 AGAGGTAAAACCCTACTCCTGC 59.161 50.000 0.00 0.00 39.75 4.85
145 146 2.838813 GAGGTAAAACCCTACTCCTGCT 59.161 50.000 0.00 0.00 39.75 4.24
146 147 2.838813 AGGTAAAACCCTACTCCTGCTC 59.161 50.000 0.00 0.00 39.75 4.26
147 148 2.418334 GGTAAAACCCTACTCCTGCTCG 60.418 54.545 0.00 0.00 30.04 5.03
148 149 1.640917 AAAACCCTACTCCTGCTCGA 58.359 50.000 0.00 0.00 0.00 4.04
149 150 1.867363 AAACCCTACTCCTGCTCGAT 58.133 50.000 0.00 0.00 0.00 3.59
150 151 1.867363 AACCCTACTCCTGCTCGATT 58.133 50.000 0.00 0.00 0.00 3.34
151 152 2.750141 ACCCTACTCCTGCTCGATTA 57.250 50.000 0.00 0.00 0.00 1.75
152 153 3.246416 ACCCTACTCCTGCTCGATTAT 57.754 47.619 0.00 0.00 0.00 1.28
153 154 4.383931 ACCCTACTCCTGCTCGATTATA 57.616 45.455 0.00 0.00 0.00 0.98
154 155 4.936802 ACCCTACTCCTGCTCGATTATAT 58.063 43.478 0.00 0.00 0.00 0.86
155 156 5.334421 ACCCTACTCCTGCTCGATTATATT 58.666 41.667 0.00 0.00 0.00 1.28
156 157 5.419471 ACCCTACTCCTGCTCGATTATATTC 59.581 44.000 0.00 0.00 0.00 1.75
157 158 5.449314 CCCTACTCCTGCTCGATTATATTCG 60.449 48.000 10.12 10.12 40.46 3.34
158 159 5.354513 CCTACTCCTGCTCGATTATATTCGA 59.645 44.000 16.44 16.44 45.27 3.71
159 160 5.906113 ACTCCTGCTCGATTATATTCGAT 57.094 39.130 17.38 1.80 46.16 3.59
160 161 5.645624 ACTCCTGCTCGATTATATTCGATG 58.354 41.667 17.38 13.11 46.16 3.84
161 162 5.184096 ACTCCTGCTCGATTATATTCGATGT 59.816 40.000 17.38 8.94 46.16 3.06
162 163 5.402398 TCCTGCTCGATTATATTCGATGTG 58.598 41.667 17.38 9.36 46.16 3.21
163 164 5.048013 TCCTGCTCGATTATATTCGATGTGT 60.048 40.000 17.38 0.00 46.16 3.72
164 165 6.150474 TCCTGCTCGATTATATTCGATGTGTA 59.850 38.462 17.38 7.47 46.16 2.90
165 166 6.975197 CCTGCTCGATTATATTCGATGTGTAT 59.025 38.462 17.38 0.00 46.16 2.29
166 167 7.043788 CCTGCTCGATTATATTCGATGTGTATG 60.044 40.741 17.38 7.64 46.16 2.39
167 168 7.535139 TGCTCGATTATATTCGATGTGTATGA 58.465 34.615 17.38 0.00 46.16 2.15
168 169 8.190784 TGCTCGATTATATTCGATGTGTATGAT 58.809 33.333 17.38 0.00 46.16 2.45
169 170 9.025020 GCTCGATTATATTCGATGTGTATGATT 57.975 33.333 17.38 0.00 46.16 2.57
178 179 7.755582 TTCGATGTGTATGATTACAGAGTTG 57.244 36.000 0.00 0.00 38.98 3.16
179 180 7.095695 TCGATGTGTATGATTACAGAGTTGA 57.904 36.000 0.00 0.00 38.98 3.18
180 181 7.716612 TCGATGTGTATGATTACAGAGTTGAT 58.283 34.615 0.00 0.00 38.98 2.57
181 182 7.862873 TCGATGTGTATGATTACAGAGTTGATC 59.137 37.037 0.00 0.00 38.98 2.92
182 183 7.864882 CGATGTGTATGATTACAGAGTTGATCT 59.135 37.037 0.00 0.00 38.98 2.75
184 185 9.973450 ATGTGTATGATTACAGAGTTGATCTAC 57.027 33.333 0.00 0.00 38.98 2.59
185 186 8.414003 TGTGTATGATTACAGAGTTGATCTACC 58.586 37.037 3.54 0.00 38.98 3.18
186 187 8.634444 GTGTATGATTACAGAGTTGATCTACCT 58.366 37.037 3.54 0.00 38.98 3.08
187 188 8.851145 TGTATGATTACAGAGTTGATCTACCTC 58.149 37.037 3.54 1.73 36.10 3.85
188 189 6.378710 TGATTACAGAGTTGATCTACCTCG 57.621 41.667 3.54 0.00 36.10 4.63
189 190 6.120220 TGATTACAGAGTTGATCTACCTCGA 58.880 40.000 3.54 0.00 36.10 4.04
190 191 6.261158 TGATTACAGAGTTGATCTACCTCGAG 59.739 42.308 5.13 5.13 36.10 4.04
191 192 4.223556 ACAGAGTTGATCTACCTCGAGA 57.776 45.455 15.71 0.00 36.10 4.04
192 193 4.787551 ACAGAGTTGATCTACCTCGAGAT 58.212 43.478 15.71 0.00 38.94 2.75
203 204 6.319141 TCTACCTCGAGATCATATGTTGTG 57.681 41.667 15.71 0.00 0.00 3.33
204 205 4.327982 ACCTCGAGATCATATGTTGTGG 57.672 45.455 15.71 1.17 0.00 4.17
205 206 3.706594 ACCTCGAGATCATATGTTGTGGT 59.293 43.478 15.71 1.77 31.23 4.16
206 207 4.202161 ACCTCGAGATCATATGTTGTGGTC 60.202 45.833 15.71 0.00 30.52 4.02
207 208 4.038522 CCTCGAGATCATATGTTGTGGTCT 59.961 45.833 15.71 0.00 0.00 3.85
208 209 5.241728 CCTCGAGATCATATGTTGTGGTCTA 59.758 44.000 15.71 0.00 0.00 2.59
209 210 6.239036 CCTCGAGATCATATGTTGTGGTCTAA 60.239 42.308 15.71 0.00 0.00 2.10
210 211 7.107639 TCGAGATCATATGTTGTGGTCTAAA 57.892 36.000 1.90 0.00 0.00 1.85
211 212 7.552459 TCGAGATCATATGTTGTGGTCTAAAA 58.448 34.615 1.90 0.00 0.00 1.52
212 213 7.491372 TCGAGATCATATGTTGTGGTCTAAAAC 59.509 37.037 1.90 0.00 0.00 2.43
227 228 7.133133 GGTCTAAAACCTAAGGGTATGATGA 57.867 40.000 0.00 0.00 46.67 2.92
228 229 7.571025 GGTCTAAAACCTAAGGGTATGATGAA 58.429 38.462 0.00 0.00 46.67 2.57
229 230 8.218488 GGTCTAAAACCTAAGGGTATGATGAAT 58.782 37.037 0.00 0.00 46.67 2.57
234 235 9.936329 AAAACCTAAGGGTATGATGAATAATGT 57.064 29.630 0.00 0.00 46.67 2.71
235 236 9.574516 AAACCTAAGGGTATGATGAATAATGTC 57.425 33.333 0.00 0.00 46.67 3.06
236 237 8.275187 ACCTAAGGGTATGATGAATAATGTCA 57.725 34.615 0.00 0.00 45.32 3.58
237 238 8.894592 ACCTAAGGGTATGATGAATAATGTCAT 58.105 33.333 0.00 0.00 45.32 3.06
256 257 7.147143 TGTCATAATTCTCTATCGACTAGCC 57.853 40.000 0.00 0.00 0.00 3.93
257 258 6.943146 TGTCATAATTCTCTATCGACTAGCCT 59.057 38.462 0.00 0.00 0.00 4.58
258 259 7.094592 TGTCATAATTCTCTATCGACTAGCCTG 60.095 40.741 0.00 0.00 0.00 4.85
259 260 6.375736 TCATAATTCTCTATCGACTAGCCTGG 59.624 42.308 0.00 0.00 0.00 4.45
260 261 1.898902 TCTCTATCGACTAGCCTGGC 58.101 55.000 11.65 11.65 0.00 4.85
261 262 0.885196 CTCTATCGACTAGCCTGGCC 59.115 60.000 16.57 0.00 0.00 5.36
262 263 0.539901 TCTATCGACTAGCCTGGCCC 60.540 60.000 16.57 1.37 0.00 5.80
263 264 0.540830 CTATCGACTAGCCTGGCCCT 60.541 60.000 16.57 0.00 0.00 5.19
264 265 0.827925 TATCGACTAGCCTGGCCCTG 60.828 60.000 16.57 8.33 0.00 4.45
265 266 3.854669 CGACTAGCCTGGCCCTGG 61.855 72.222 16.57 1.51 0.00 4.45
266 267 4.182433 GACTAGCCTGGCCCTGGC 62.182 72.222 23.14 23.14 46.61 4.85
271 272 3.250847 GCCTGGCCCTGGCTTATA 58.749 61.111 23.29 0.00 43.62 0.98
272 273 1.770324 GCCTGGCCCTGGCTTATAT 59.230 57.895 23.29 0.00 43.62 0.86
273 274 0.991920 GCCTGGCCCTGGCTTATATA 59.008 55.000 23.29 0.00 43.62 0.86
274 275 1.354368 GCCTGGCCCTGGCTTATATAA 59.646 52.381 23.29 0.00 43.62 0.98
275 276 2.024941 GCCTGGCCCTGGCTTATATAAT 60.025 50.000 23.29 0.00 43.62 1.28
276 277 3.624777 CCTGGCCCTGGCTTATATAATG 58.375 50.000 8.29 0.00 41.60 1.90
277 278 3.019564 CTGGCCCTGGCTTATATAATGC 58.980 50.000 8.29 2.51 41.60 3.56
278 279 2.378208 TGGCCCTGGCTTATATAATGCA 59.622 45.455 8.29 0.00 41.60 3.96
279 280 2.755103 GGCCCTGGCTTATATAATGCAC 59.245 50.000 8.29 7.97 41.60 4.57
280 281 2.755103 GCCCTGGCTTATATAATGCACC 59.245 50.000 14.68 7.65 38.26 5.01
281 282 3.813957 GCCCTGGCTTATATAATGCACCA 60.814 47.826 14.68 10.69 38.26 4.17
282 283 4.012374 CCCTGGCTTATATAATGCACCAG 58.988 47.826 18.30 18.30 42.28 4.00
283 284 4.263462 CCCTGGCTTATATAATGCACCAGA 60.263 45.833 22.90 0.00 44.80 3.86
284 285 4.940046 CCTGGCTTATATAATGCACCAGAG 59.060 45.833 22.90 14.83 44.80 3.35
285 286 4.910195 TGGCTTATATAATGCACCAGAGG 58.090 43.478 14.68 0.00 0.00 3.69
286 287 3.691609 GGCTTATATAATGCACCAGAGGC 59.308 47.826 14.68 4.26 0.00 4.70
287 288 3.691609 GCTTATATAATGCACCAGAGGCC 59.308 47.826 0.00 0.00 0.00 5.19
288 289 4.566488 GCTTATATAATGCACCAGAGGCCT 60.566 45.833 3.86 3.86 0.00 5.19
289 290 5.338381 GCTTATATAATGCACCAGAGGCCTA 60.338 44.000 4.42 0.00 0.00 3.93
290 291 4.833478 ATATAATGCACCAGAGGCCTAG 57.167 45.455 4.42 0.20 0.00 3.02
291 292 1.131638 TAATGCACCAGAGGCCTAGG 58.868 55.000 19.66 19.66 0.00 3.02
292 293 0.621571 AATGCACCAGAGGCCTAGGA 60.622 55.000 26.29 8.15 0.00 2.94
293 294 0.401105 ATGCACCAGAGGCCTAGGAT 60.401 55.000 26.29 9.94 0.00 3.24
294 295 0.264657 TGCACCAGAGGCCTAGGATA 59.735 55.000 26.29 11.47 0.00 2.59
295 296 1.343985 TGCACCAGAGGCCTAGGATAA 60.344 52.381 26.29 10.64 0.00 1.75
296 297 1.070914 GCACCAGAGGCCTAGGATAAC 59.929 57.143 26.29 11.03 0.00 1.89
297 298 2.398588 CACCAGAGGCCTAGGATAACA 58.601 52.381 26.29 0.00 0.00 2.41
298 299 2.771943 CACCAGAGGCCTAGGATAACAA 59.228 50.000 26.29 0.00 0.00 2.83
299 300 3.041946 ACCAGAGGCCTAGGATAACAAG 58.958 50.000 26.29 2.53 0.00 3.16
300 301 3.309296 CCAGAGGCCTAGGATAACAAGA 58.691 50.000 14.75 0.00 0.00 3.02
301 302 3.323403 CCAGAGGCCTAGGATAACAAGAG 59.677 52.174 14.75 0.00 0.00 2.85
302 303 3.964031 CAGAGGCCTAGGATAACAAGAGT 59.036 47.826 14.75 0.00 0.00 3.24
303 304 4.038642 CAGAGGCCTAGGATAACAAGAGTC 59.961 50.000 14.75 0.00 0.00 3.36
304 305 3.310193 AGGCCTAGGATAACAAGAGTCC 58.690 50.000 14.75 0.00 0.00 3.85
305 306 3.051727 AGGCCTAGGATAACAAGAGTCCT 60.052 47.826 14.75 1.21 44.31 3.85
306 307 4.170251 AGGCCTAGGATAACAAGAGTCCTA 59.830 45.833 14.75 0.00 42.24 2.94
311 312 5.113446 AGGATAACAAGAGTCCTAGTCGA 57.887 43.478 0.00 0.00 40.49 4.20
312 313 5.507637 AGGATAACAAGAGTCCTAGTCGAA 58.492 41.667 0.00 0.00 40.49 3.71
313 314 6.130569 AGGATAACAAGAGTCCTAGTCGAAT 58.869 40.000 0.00 0.00 40.49 3.34
314 315 7.288560 AGGATAACAAGAGTCCTAGTCGAATA 58.711 38.462 0.00 0.00 40.49 1.75
315 316 7.229106 AGGATAACAAGAGTCCTAGTCGAATAC 59.771 40.741 0.00 0.00 40.49 1.89
316 317 7.013083 GGATAACAAGAGTCCTAGTCGAATACA 59.987 40.741 0.00 0.00 0.00 2.29
317 318 6.777213 AACAAGAGTCCTAGTCGAATACAT 57.223 37.500 0.00 0.00 0.00 2.29
318 319 6.777213 ACAAGAGTCCTAGTCGAATACATT 57.223 37.500 0.00 0.00 0.00 2.71
319 320 6.565234 ACAAGAGTCCTAGTCGAATACATTG 58.435 40.000 0.00 0.00 0.00 2.82
320 321 5.776173 AGAGTCCTAGTCGAATACATTGG 57.224 43.478 0.00 0.00 0.00 3.16
321 322 5.202004 AGAGTCCTAGTCGAATACATTGGT 58.798 41.667 0.00 0.00 0.00 3.67
322 323 5.067936 AGAGTCCTAGTCGAATACATTGGTG 59.932 44.000 0.00 0.00 0.00 4.17
323 324 4.099573 AGTCCTAGTCGAATACATTGGTGG 59.900 45.833 0.00 0.00 0.00 4.61
324 325 4.098960 GTCCTAGTCGAATACATTGGTGGA 59.901 45.833 0.00 0.00 0.00 4.02
325 326 4.341235 TCCTAGTCGAATACATTGGTGGAG 59.659 45.833 0.00 0.00 0.00 3.86
326 327 4.341235 CCTAGTCGAATACATTGGTGGAGA 59.659 45.833 0.00 0.00 0.00 3.71
327 328 4.392921 AGTCGAATACATTGGTGGAGAG 57.607 45.455 0.00 0.00 0.00 3.20
328 329 3.133003 AGTCGAATACATTGGTGGAGAGG 59.867 47.826 0.00 0.00 0.00 3.69
329 330 3.132289 GTCGAATACATTGGTGGAGAGGA 59.868 47.826 0.00 0.00 0.00 3.71
330 331 3.384789 TCGAATACATTGGTGGAGAGGAG 59.615 47.826 0.00 0.00 0.00 3.69
331 332 3.133003 CGAATACATTGGTGGAGAGGAGT 59.867 47.826 0.00 0.00 0.00 3.85
332 333 4.698575 GAATACATTGGTGGAGAGGAGTC 58.301 47.826 0.00 0.00 0.00 3.36
333 334 1.280457 ACATTGGTGGAGAGGAGTCC 58.720 55.000 0.00 0.00 37.10 3.85
334 335 1.203364 ACATTGGTGGAGAGGAGTCCT 60.203 52.381 12.85 12.85 37.52 3.85
335 336 1.912043 CATTGGTGGAGAGGAGTCCTT 59.088 52.381 14.41 3.20 37.52 3.36
336 337 1.352083 TTGGTGGAGAGGAGTCCTTG 58.648 55.000 14.41 0.00 37.52 3.61
337 338 0.191064 TGGTGGAGAGGAGTCCTTGT 59.809 55.000 14.41 3.63 37.52 3.16
338 339 0.899019 GGTGGAGAGGAGTCCTTGTC 59.101 60.000 14.41 13.10 37.52 3.18
339 340 1.551329 GGTGGAGAGGAGTCCTTGTCT 60.551 57.143 14.41 6.09 37.52 3.41
340 341 2.252714 GTGGAGAGGAGTCCTTGTCTT 58.747 52.381 14.41 0.00 37.52 3.01
341 342 2.028567 GTGGAGAGGAGTCCTTGTCTTG 60.029 54.545 14.41 0.00 37.52 3.02
342 343 2.158310 TGGAGAGGAGTCCTTGTCTTGA 60.158 50.000 14.41 0.15 37.52 3.02
343 344 3.103742 GGAGAGGAGTCCTTGTCTTGAT 58.896 50.000 14.41 0.00 31.76 2.57
344 345 3.132111 GGAGAGGAGTCCTTGTCTTGATC 59.868 52.174 14.41 0.00 31.76 2.92
345 346 3.766591 GAGAGGAGTCCTTGTCTTGATCA 59.233 47.826 14.41 0.00 31.76 2.92
346 347 3.513515 AGAGGAGTCCTTGTCTTGATCAC 59.486 47.826 14.41 0.00 31.76 3.06
347 348 2.569404 AGGAGTCCTTGTCTTGATCACC 59.431 50.000 5.62 0.00 0.00 4.02
348 349 2.303022 GGAGTCCTTGTCTTGATCACCA 59.697 50.000 0.41 0.00 0.00 4.17
349 350 3.244561 GGAGTCCTTGTCTTGATCACCAA 60.245 47.826 0.41 0.00 0.00 3.67
350 351 8.955133 GAGGAGTCCTTGTCTTGATCACCAAG 62.955 50.000 14.41 16.58 43.13 3.61
362 363 7.256756 CTTGATCACCAAGTCTTATGGAATC 57.743 40.000 0.00 3.32 45.52 2.52
363 364 6.566079 TGATCACCAAGTCTTATGGAATCT 57.434 37.500 0.00 0.00 40.56 2.40
364 365 6.962182 TGATCACCAAGTCTTATGGAATCTT 58.038 36.000 0.00 0.00 40.56 2.40
365 366 7.050377 TGATCACCAAGTCTTATGGAATCTTC 58.950 38.462 0.00 0.00 40.56 2.87
375 376 2.373938 GGAATCTTCCTCGTGTGCG 58.626 57.895 1.57 0.00 44.11 5.34
376 377 1.084370 GGAATCTTCCTCGTGTGCGG 61.084 60.000 1.57 0.00 44.11 5.69
377 378 1.696832 GAATCTTCCTCGTGTGCGGC 61.697 60.000 0.00 0.00 38.89 6.53
378 379 2.449031 AATCTTCCTCGTGTGCGGCA 62.449 55.000 0.00 0.00 38.89 5.69
379 380 2.449031 ATCTTCCTCGTGTGCGGCAA 62.449 55.000 3.23 0.00 38.89 4.52
380 381 2.664851 TTCCTCGTGTGCGGCAAG 60.665 61.111 3.23 0.00 38.89 4.01
381 382 4.680237 TCCTCGTGTGCGGCAAGG 62.680 66.667 3.23 8.30 38.89 3.61
402 403 4.424711 GCCCGAAGTGGCCCATGA 62.425 66.667 0.00 0.00 46.11 3.07
403 404 2.124570 CCCGAAGTGGCCCATGAG 60.125 66.667 0.00 0.00 35.87 2.90
404 405 2.671070 CCGAAGTGGCCCATGAGT 59.329 61.111 0.00 0.00 0.00 3.41
405 406 1.746615 CCGAAGTGGCCCATGAGTG 60.747 63.158 0.00 0.00 0.00 3.51
406 407 1.296392 CGAAGTGGCCCATGAGTGA 59.704 57.895 0.00 0.00 0.00 3.41
407 408 0.321564 CGAAGTGGCCCATGAGTGAA 60.322 55.000 0.00 0.00 0.00 3.18
408 409 1.168714 GAAGTGGCCCATGAGTGAAC 58.831 55.000 0.00 0.00 0.00 3.18
409 410 0.251341 AAGTGGCCCATGAGTGAACC 60.251 55.000 0.00 0.00 0.00 3.62
410 411 2.040544 GTGGCCCATGAGTGAACCG 61.041 63.158 0.00 0.00 0.00 4.44
411 412 3.134127 GGCCCATGAGTGAACCGC 61.134 66.667 0.00 0.00 0.00 5.68
412 413 3.134127 GCCCATGAGTGAACCGCC 61.134 66.667 0.00 0.00 0.00 6.13
413 414 2.350895 CCCATGAGTGAACCGCCA 59.649 61.111 0.00 0.00 0.00 5.69
414 415 1.077501 CCCATGAGTGAACCGCCAT 60.078 57.895 0.00 0.00 0.00 4.40
415 416 1.378882 CCCATGAGTGAACCGCCATG 61.379 60.000 0.00 0.00 36.92 3.66
416 417 1.378882 CCATGAGTGAACCGCCATGG 61.379 60.000 7.63 7.63 46.64 3.66
417 418 1.077501 ATGAGTGAACCGCCATGGG 60.078 57.895 15.13 3.37 44.64 4.00
418 419 2.438434 GAGTGAACCGCCATGGGG 60.438 66.667 21.60 21.60 44.64 4.96
436 437 3.917760 GTCCTCGGCCCGATCCAG 61.918 72.222 6.16 0.00 34.61 3.86
439 440 4.598894 CTCGGCCCGATCCAGCTG 62.599 72.222 6.16 6.78 34.61 4.24
441 442 3.933722 CGGCCCGATCCAGCTGAT 61.934 66.667 17.39 6.84 37.58 2.90
442 443 2.512896 GGCCCGATCCAGCTGATT 59.487 61.111 17.39 0.81 32.41 2.57
443 444 1.895707 GGCCCGATCCAGCTGATTG 60.896 63.158 17.39 10.45 32.41 2.67
447 448 3.302375 CGATCCAGCTGATTGGGAG 57.698 57.895 17.39 0.00 38.81 4.30
448 449 0.755079 CGATCCAGCTGATTGGGAGA 59.245 55.000 17.39 1.60 38.81 3.71
449 450 1.539929 CGATCCAGCTGATTGGGAGAC 60.540 57.143 17.39 1.43 38.81 3.36
450 451 0.467384 ATCCAGCTGATTGGGAGACG 59.533 55.000 17.39 0.00 38.81 4.18
451 452 0.614697 TCCAGCTGATTGGGAGACGA 60.615 55.000 17.39 0.00 38.81 4.20
452 453 0.460987 CCAGCTGATTGGGAGACGAC 60.461 60.000 17.39 0.00 34.46 4.34
453 454 0.803768 CAGCTGATTGGGAGACGACG 60.804 60.000 8.42 0.00 0.00 5.12
454 455 1.215647 GCTGATTGGGAGACGACGT 59.784 57.895 0.00 0.00 0.00 4.34
455 456 1.078759 GCTGATTGGGAGACGACGTG 61.079 60.000 4.58 0.00 0.00 4.49
456 457 0.458543 CTGATTGGGAGACGACGTGG 60.459 60.000 4.58 0.00 0.00 4.94
457 458 1.183030 TGATTGGGAGACGACGTGGT 61.183 55.000 4.58 1.66 0.00 4.16
458 459 0.736325 GATTGGGAGACGACGTGGTG 60.736 60.000 8.32 0.00 0.00 4.17
459 460 1.183030 ATTGGGAGACGACGTGGTGA 61.183 55.000 8.32 0.00 0.00 4.02
460 461 1.802337 TTGGGAGACGACGTGGTGAG 61.802 60.000 8.32 0.00 0.00 3.51
461 462 2.266627 GGGAGACGACGTGGTGAGT 61.267 63.158 8.32 0.00 0.00 3.41
462 463 0.957395 GGGAGACGACGTGGTGAGTA 60.957 60.000 8.32 0.00 0.00 2.59
463 464 0.167689 GGAGACGACGTGGTGAGTAC 59.832 60.000 8.32 0.00 0.00 2.73
465 466 1.211190 GACGACGTGGTGAGTACCC 59.789 63.158 8.32 0.00 46.96 3.69
466 467 2.205243 GACGACGTGGTGAGTACCCC 62.205 65.000 8.32 0.00 46.96 4.95
467 468 2.976356 GACGTGGTGAGTACCCCC 59.024 66.667 0.00 0.00 46.96 5.40
468 469 1.608627 GACGTGGTGAGTACCCCCT 60.609 63.158 0.00 0.00 46.96 4.79
469 470 0.323725 GACGTGGTGAGTACCCCCTA 60.324 60.000 0.00 0.00 46.96 3.53
470 471 0.324091 ACGTGGTGAGTACCCCCTAG 60.324 60.000 0.00 0.00 46.96 3.02
471 472 0.324091 CGTGGTGAGTACCCCCTAGT 60.324 60.000 0.00 0.00 46.96 2.57
472 473 1.482954 GTGGTGAGTACCCCCTAGTC 58.517 60.000 0.00 0.00 46.96 2.59
473 474 0.337428 TGGTGAGTACCCCCTAGTCC 59.663 60.000 0.00 0.00 46.96 3.85
474 475 0.337428 GGTGAGTACCCCCTAGTCCA 59.663 60.000 0.00 0.00 41.36 4.02
475 476 1.273438 GGTGAGTACCCCCTAGTCCAA 60.273 57.143 0.00 0.00 41.36 3.53
476 477 2.108970 GTGAGTACCCCCTAGTCCAAG 58.891 57.143 0.00 0.00 0.00 3.61
477 478 2.005350 TGAGTACCCCCTAGTCCAAGA 58.995 52.381 0.00 0.00 0.00 3.02
478 479 2.292061 TGAGTACCCCCTAGTCCAAGAC 60.292 54.545 0.00 0.00 0.00 3.01
479 480 1.720533 AGTACCCCCTAGTCCAAGACA 59.279 52.381 0.00 0.00 34.60 3.41
480 481 1.829849 GTACCCCCTAGTCCAAGACAC 59.170 57.143 0.00 0.00 34.60 3.67
481 482 0.546988 ACCCCCTAGTCCAAGACACC 60.547 60.000 0.00 0.00 34.60 4.16
482 483 1.614241 CCCCCTAGTCCAAGACACCG 61.614 65.000 0.00 0.00 34.60 4.94
483 484 0.903454 CCCCTAGTCCAAGACACCGT 60.903 60.000 0.00 0.00 34.60 4.83
484 485 0.531200 CCCTAGTCCAAGACACCGTC 59.469 60.000 0.00 0.00 34.60 4.79
485 486 1.254026 CCTAGTCCAAGACACCGTCA 58.746 55.000 0.00 0.00 34.60 4.35
486 487 1.616865 CCTAGTCCAAGACACCGTCAA 59.383 52.381 0.00 0.00 34.60 3.18
487 488 2.609737 CCTAGTCCAAGACACCGTCAAC 60.610 54.545 0.00 0.00 34.60 3.18
544 545 2.204090 TCAACCTCCTCCCACCCC 60.204 66.667 0.00 0.00 0.00 4.95
548 549 1.757508 AACCTCCTCCCACCCCTGTA 61.758 60.000 0.00 0.00 0.00 2.74
587 588 4.176752 CCCTCTAAGCCCCGCCAC 62.177 72.222 0.00 0.00 0.00 5.01
602 603 1.197721 CGCCACACCATTGAAGAACTC 59.802 52.381 0.00 0.00 0.00 3.01
613 614 0.178301 GAAGAACTCCGGTGATCCCC 59.822 60.000 11.17 0.00 0.00 4.81
670 671 4.087182 TGGCTTCCCCGTAAGATAGATAG 58.913 47.826 0.00 0.00 43.02 2.08
674 675 5.106078 GCTTCCCCGTAAGATAGATAGTGAG 60.106 48.000 0.00 0.00 43.02 3.51
682 683 6.071896 CGTAAGATAGATAGTGAGGCAATGGA 60.072 42.308 0.00 0.00 43.02 3.41
699 700 9.331466 AGGCAATGGATTCTTCTAAGATAGATA 57.669 33.333 0.00 0.00 34.49 1.98
705 706 9.527157 TGGATTCTTCTAAGATAGATAGTGGAG 57.473 37.037 0.00 0.00 34.49 3.86
707 708 9.243105 GATTCTTCTAAGATAGATAGTGGAGCT 57.757 37.037 0.00 0.00 34.49 4.09
716 717 0.749649 ATAGTGGAGCTGCCTCTTCG 59.250 55.000 1.53 0.00 40.77 3.79
741 742 6.823689 GGATGAACTAGAAAAAGTGGCTGATA 59.176 38.462 0.00 0.00 0.00 2.15
762 763 1.879380 CGAAGACAATTTCCAGGCACA 59.121 47.619 0.00 0.00 0.00 4.57
898 899 9.914131 GATAGGATTATAAAACAAATTGAGCCC 57.086 33.333 0.00 0.00 0.00 5.19
899 900 7.732222 AGGATTATAAAACAAATTGAGCCCA 57.268 32.000 0.00 0.00 0.00 5.36
900 901 8.144862 AGGATTATAAAACAAATTGAGCCCAA 57.855 30.769 0.00 0.00 36.61 4.12
901 902 8.601546 AGGATTATAAAACAAATTGAGCCCAAA 58.398 29.630 0.00 0.00 35.67 3.28
902 903 9.225436 GGATTATAAAACAAATTGAGCCCAAAA 57.775 29.630 0.00 0.00 35.67 2.44
908 909 8.476657 AAAACAAATTGAGCCCAAAATTTTTG 57.523 26.923 13.76 13.76 34.55 2.44
909 910 6.146601 ACAAATTGAGCCCAAAATTTTTGG 57.853 33.333 27.12 27.12 34.94 3.28
921 922 6.826668 CCAAAATTTTTGGGAGAAACTAGGT 58.173 36.000 26.61 0.00 32.71 3.08
922 923 7.958088 CCAAAATTTTTGGGAGAAACTAGGTA 58.042 34.615 26.61 0.00 32.71 3.08
923 924 8.425703 CCAAAATTTTTGGGAGAAACTAGGTAA 58.574 33.333 26.61 0.00 32.71 2.85
924 925 9.476202 CAAAATTTTTGGGAGAAACTAGGTAAG 57.524 33.333 13.04 0.00 0.00 2.34
925 926 9.429109 AAAATTTTTGGGAGAAACTAGGTAAGA 57.571 29.630 0.00 0.00 0.00 2.10
926 927 8.637196 AATTTTTGGGAGAAACTAGGTAAGAG 57.363 34.615 0.00 0.00 0.00 2.85
927 928 5.757099 TTTGGGAGAAACTAGGTAAGAGG 57.243 43.478 0.00 0.00 0.00 3.69
928 929 4.415224 TGGGAGAAACTAGGTAAGAGGT 57.585 45.455 0.00 0.00 0.00 3.85
929 930 5.541258 TGGGAGAAACTAGGTAAGAGGTA 57.459 43.478 0.00 0.00 0.00 3.08
930 931 5.907421 TGGGAGAAACTAGGTAAGAGGTAA 58.093 41.667 0.00 0.00 0.00 2.85
931 932 5.956563 TGGGAGAAACTAGGTAAGAGGTAAG 59.043 44.000 0.00 0.00 0.00 2.34
932 933 5.363292 GGGAGAAACTAGGTAAGAGGTAAGG 59.637 48.000 0.00 0.00 0.00 2.69
933 934 5.363292 GGAGAAACTAGGTAAGAGGTAAGGG 59.637 48.000 0.00 0.00 0.00 3.95
934 935 5.913277 AGAAACTAGGTAAGAGGTAAGGGT 58.087 41.667 0.00 0.00 0.00 4.34
935 936 5.957168 AGAAACTAGGTAAGAGGTAAGGGTC 59.043 44.000 0.00 0.00 0.00 4.46
936 937 3.895998 ACTAGGTAAGAGGTAAGGGTCG 58.104 50.000 0.00 0.00 0.00 4.79
937 938 3.525199 ACTAGGTAAGAGGTAAGGGTCGA 59.475 47.826 0.00 0.00 0.00 4.20
938 939 3.463048 AGGTAAGAGGTAAGGGTCGAA 57.537 47.619 0.00 0.00 0.00 3.71
939 940 3.991683 AGGTAAGAGGTAAGGGTCGAAT 58.008 45.455 0.00 0.00 0.00 3.34
940 941 4.359996 AGGTAAGAGGTAAGGGTCGAATT 58.640 43.478 0.00 0.00 0.00 2.17
941 942 4.161754 AGGTAAGAGGTAAGGGTCGAATTG 59.838 45.833 0.00 0.00 0.00 2.32
942 943 4.081254 GGTAAGAGGTAAGGGTCGAATTGT 60.081 45.833 0.00 0.00 0.00 2.71
943 944 3.611766 AGAGGTAAGGGTCGAATTGTG 57.388 47.619 0.00 0.00 0.00 3.33
944 945 2.236395 AGAGGTAAGGGTCGAATTGTGG 59.764 50.000 0.00 0.00 0.00 4.17
945 946 1.280998 AGGTAAGGGTCGAATTGTGGG 59.719 52.381 0.00 0.00 0.00 4.61
946 947 1.279846 GGTAAGGGTCGAATTGTGGGA 59.720 52.381 0.00 0.00 0.00 4.37
947 948 2.629051 GTAAGGGTCGAATTGTGGGAG 58.371 52.381 0.00 0.00 0.00 4.30
948 949 1.358152 AAGGGTCGAATTGTGGGAGA 58.642 50.000 0.00 0.00 0.00 3.71
949 950 1.358152 AGGGTCGAATTGTGGGAGAA 58.642 50.000 0.00 0.00 0.00 2.87
950 951 1.916181 AGGGTCGAATTGTGGGAGAAT 59.084 47.619 0.00 0.00 0.00 2.40
951 952 2.092914 AGGGTCGAATTGTGGGAGAATC 60.093 50.000 0.00 0.00 0.00 2.52
1110 1614 2.865308 CAGCCGACGACTACGACA 59.135 61.111 0.00 0.00 42.66 4.35
1244 1754 1.815421 CCCACCGCCATTCGAGAAG 60.815 63.158 0.00 0.00 41.67 2.85
1433 1943 4.430765 CCCCTCACCGTCCGTTCG 62.431 72.222 0.00 0.00 0.00 3.95
1502 2012 1.616091 CCATCCAGCCCGGCAAAAAT 61.616 55.000 13.15 0.00 33.14 1.82
1719 2229 3.197790 CGATGCAGGTGGAAGGCG 61.198 66.667 0.00 0.00 0.00 5.52
1793 2330 1.227823 CTTCACCGTCCTGGCACAA 60.228 57.895 0.00 0.00 43.94 3.33
1799 2336 3.050275 GTCCTGGCACAAGACGGC 61.050 66.667 0.00 0.00 40.15 5.68
1902 2439 2.658707 GACGTGCTCAAGGTGCGTC 61.659 63.158 0.00 0.00 43.53 5.19
1967 2504 4.055360 CCACGATGATTTACTTGCGGATA 58.945 43.478 0.00 0.00 0.00 2.59
2003 2540 4.403453 GTGGTTTCAAATGATGAGTACGC 58.597 43.478 0.00 0.00 39.77 4.42
2030 2567 1.681666 AGCACAGGGTGGTGATCAG 59.318 57.895 0.00 0.00 42.86 2.90
2035 2572 0.251354 CAGGGTGGTGATCAGGTCTG 59.749 60.000 0.00 0.00 0.00 3.51
2166 2703 2.030562 CGGGCTTTCACCGTCACT 59.969 61.111 0.00 0.00 46.03 3.41
2208 2745 2.580276 CATGGCCATGGCACCAAC 59.420 61.111 36.56 20.03 41.84 3.77
2211 2748 2.283101 GGCCATGGCACCAACTCA 60.283 61.111 36.56 0.00 44.11 3.41
2282 2819 0.239347 GGACTATCGCCATTGCATGC 59.761 55.000 11.82 11.82 37.32 4.06
2314 2872 2.584835 ACTTGGCTATGTCTTGGCAA 57.415 45.000 0.00 0.00 44.48 4.52
2322 2880 4.141869 GGCTATGTCTTGGCAAAAATGGAT 60.142 41.667 0.00 0.00 0.00 3.41
2373 2936 0.976641 TGGATGTCCACTCCTCACAC 59.023 55.000 0.00 0.00 42.01 3.82
2523 3094 1.886542 GTCTGCAAAACCAAGGTAGGG 59.113 52.381 0.00 0.00 0.00 3.53
2721 3292 2.425538 TTTTCCAGCCATGGGAACAAGA 60.426 45.455 15.13 0.00 44.30 3.02
2723 3294 5.776452 TTTTCCAGCCATGGGAACAAGAAG 61.776 45.833 15.13 0.00 44.30 2.85
2751 3324 5.143369 AGGGAGATAATTTCCTTGGCATTC 58.857 41.667 0.00 0.00 35.01 2.67
2752 3325 5.103344 AGGGAGATAATTTCCTTGGCATTCT 60.103 40.000 0.00 0.00 35.01 2.40
2780 3356 8.771521 TGGTTCACTTAATACTACTAGGCATA 57.228 34.615 0.00 0.00 0.00 3.14
2782 3358 8.858094 GGTTCACTTAATACTACTAGGCATAGT 58.142 37.037 16.24 16.24 44.57 2.12
2828 3404 7.963532 TCTGTGGGGATTTAACTATCATCTAC 58.036 38.462 0.00 0.00 0.00 2.59
2829 3405 7.567250 TCTGTGGGGATTTAACTATCATCTACA 59.433 37.037 0.00 0.00 0.00 2.74
2830 3406 7.506114 TGTGGGGATTTAACTATCATCTACAC 58.494 38.462 0.00 0.00 0.00 2.90
2831 3407 6.645415 GTGGGGATTTAACTATCATCTACACG 59.355 42.308 0.00 0.00 0.00 4.49
3051 3633 0.881796 TGGTCTGTCGAGTACTGCAG 59.118 55.000 13.48 13.48 0.00 4.41
3074 3656 6.584942 CAGGATGATATGTTGTTAATGCATGC 59.415 38.462 11.82 11.82 39.69 4.06
3078 3660 9.628746 GATGATATGTTGTTAATGCATGCATAA 57.371 29.630 32.36 20.12 35.31 1.90
3079 3661 9.634163 ATGATATGTTGTTAATGCATGCATAAG 57.366 29.630 32.36 0.00 35.31 1.73
3095 3677 4.586421 TGCATAAGAAAAATGTGTGGACCA 59.414 37.500 0.00 0.00 0.00 4.02
3116 3701 4.524714 CCAGAAGTCAGAAGTAGAGGTTCA 59.475 45.833 0.00 0.00 0.00 3.18
3128 3713 5.655488 AGTAGAGGTTCAATCACTCGAATG 58.345 41.667 0.00 0.00 36.40 2.67
3138 3723 6.834876 TCAATCACTCGAATGACAAATGAAG 58.165 36.000 0.00 0.00 0.00 3.02
3235 3820 3.108376 AGTAATGTTCTCCCTCTCACCC 58.892 50.000 0.00 0.00 0.00 4.61
3262 3847 4.510038 GTACTCCTGTACCGACTTTTCA 57.490 45.455 0.00 0.00 42.25 2.69
3280 3865 4.640771 TTCACTTGAAAGGGATGCTAGT 57.359 40.909 0.00 0.00 38.45 2.57
3292 3877 3.559171 GGGATGCTAGTTGGTCTTTGTCA 60.559 47.826 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.679153 GGTTTTGACACCGACAATGGT 59.321 47.619 0.00 0.00 45.21 3.55
4 5 2.415697 GGTTTTGACACCGACAATGG 57.584 50.000 0.00 0.00 0.00 3.16
12 13 0.521735 GATCTGCCGGTTTTGACACC 59.478 55.000 1.90 0.00 0.00 4.16
13 14 1.464997 GAGATCTGCCGGTTTTGACAC 59.535 52.381 0.00 0.00 0.00 3.67
14 15 1.808411 GAGATCTGCCGGTTTTGACA 58.192 50.000 0.00 0.00 0.00 3.58
15 16 0.721718 CGAGATCTGCCGGTTTTGAC 59.278 55.000 0.00 0.00 0.00 3.18
16 17 0.391130 CCGAGATCTGCCGGTTTTGA 60.391 55.000 13.39 0.00 40.78 2.69
17 18 2.089854 CCGAGATCTGCCGGTTTTG 58.910 57.895 13.39 0.00 40.78 2.44
18 19 4.617875 CCGAGATCTGCCGGTTTT 57.382 55.556 13.39 0.00 40.78 2.43
23 24 1.364171 CCCTAACCGAGATCTGCCG 59.636 63.158 0.00 0.00 0.00 5.69
24 25 1.749033 CCCCTAACCGAGATCTGCC 59.251 63.158 0.00 0.00 0.00 4.85
25 26 1.049289 ACCCCCTAACCGAGATCTGC 61.049 60.000 0.00 0.00 0.00 4.26
26 27 1.041437 GACCCCCTAACCGAGATCTG 58.959 60.000 0.00 0.00 0.00 2.90
27 28 0.105607 GGACCCCCTAACCGAGATCT 60.106 60.000 0.00 0.00 0.00 2.75
28 29 1.120184 GGGACCCCCTAACCGAGATC 61.120 65.000 0.00 0.00 41.34 2.75
29 30 1.074699 GGGACCCCCTAACCGAGAT 60.075 63.158 0.00 0.00 41.34 2.75
30 31 2.365764 GGGACCCCCTAACCGAGA 59.634 66.667 0.00 0.00 41.34 4.04
34 35 3.477346 GCTCGGGACCCCCTAACC 61.477 72.222 4.46 0.00 42.67 2.85
35 36 2.365237 AGCTCGGGACCCCCTAAC 60.365 66.667 4.46 0.00 42.67 2.34
36 37 2.365105 CAGCTCGGGACCCCCTAA 60.365 66.667 4.46 0.00 42.67 2.69
37 38 3.680196 ACAGCTCGGGACCCCCTA 61.680 66.667 4.46 0.00 42.67 3.53
40 41 4.394712 CACACAGCTCGGGACCCC 62.395 72.222 4.46 0.00 0.00 4.95
41 42 3.591254 GACACACAGCTCGGGACCC 62.591 68.421 0.00 0.00 0.00 4.46
42 43 2.048127 GACACACAGCTCGGGACC 60.048 66.667 0.00 0.00 0.00 4.46
43 44 0.601558 TAAGACACACAGCTCGGGAC 59.398 55.000 0.00 0.00 0.00 4.46
44 45 0.888619 CTAAGACACACAGCTCGGGA 59.111 55.000 0.00 0.00 0.00 5.14
45 46 0.108615 CCTAAGACACACAGCTCGGG 60.109 60.000 0.00 0.00 0.00 5.14
46 47 0.888619 TCCTAAGACACACAGCTCGG 59.111 55.000 0.00 0.00 0.00 4.63
47 48 2.792890 CGATCCTAAGACACACAGCTCG 60.793 54.545 0.00 0.00 0.00 5.03
48 49 2.423892 TCGATCCTAAGACACACAGCTC 59.576 50.000 0.00 0.00 0.00 4.09
49 50 2.447443 TCGATCCTAAGACACACAGCT 58.553 47.619 0.00 0.00 0.00 4.24
50 51 2.941453 TCGATCCTAAGACACACAGC 57.059 50.000 0.00 0.00 0.00 4.40
51 52 3.491619 CCCATCGATCCTAAGACACACAG 60.492 52.174 0.00 0.00 0.00 3.66
52 53 2.430694 CCCATCGATCCTAAGACACACA 59.569 50.000 0.00 0.00 0.00 3.72
53 54 2.431057 ACCCATCGATCCTAAGACACAC 59.569 50.000 0.00 0.00 0.00 3.82
54 55 2.747177 ACCCATCGATCCTAAGACACA 58.253 47.619 0.00 0.00 0.00 3.72
55 56 4.098960 TGTTACCCATCGATCCTAAGACAC 59.901 45.833 0.00 0.00 0.00 3.67
56 57 4.283337 TGTTACCCATCGATCCTAAGACA 58.717 43.478 0.00 0.00 0.00 3.41
57 58 4.262079 CCTGTTACCCATCGATCCTAAGAC 60.262 50.000 0.00 0.00 0.00 3.01
58 59 3.895656 CCTGTTACCCATCGATCCTAAGA 59.104 47.826 0.00 0.00 0.00 2.10
59 60 3.895656 TCCTGTTACCCATCGATCCTAAG 59.104 47.826 0.00 0.00 0.00 2.18
60 61 3.918566 TCCTGTTACCCATCGATCCTAA 58.081 45.455 0.00 0.00 0.00 2.69
61 62 3.605726 TCCTGTTACCCATCGATCCTA 57.394 47.619 0.00 0.00 0.00 2.94
62 63 2.471815 TCCTGTTACCCATCGATCCT 57.528 50.000 0.00 0.00 0.00 3.24
63 64 3.203716 GTTTCCTGTTACCCATCGATCC 58.796 50.000 0.00 0.00 0.00 3.36
64 65 2.864343 CGTTTCCTGTTACCCATCGATC 59.136 50.000 0.00 0.00 0.00 3.69
65 66 2.498481 TCGTTTCCTGTTACCCATCGAT 59.502 45.455 0.00 0.00 0.00 3.59
66 67 1.894466 TCGTTTCCTGTTACCCATCGA 59.106 47.619 0.00 0.00 0.00 3.59
67 68 2.268298 CTCGTTTCCTGTTACCCATCG 58.732 52.381 0.00 0.00 0.00 3.84
68 69 2.629051 CCTCGTTTCCTGTTACCCATC 58.371 52.381 0.00 0.00 0.00 3.51
69 70 1.280998 CCCTCGTTTCCTGTTACCCAT 59.719 52.381 0.00 0.00 0.00 4.00
70 71 0.688487 CCCTCGTTTCCTGTTACCCA 59.312 55.000 0.00 0.00 0.00 4.51
71 72 0.978907 TCCCTCGTTTCCTGTTACCC 59.021 55.000 0.00 0.00 0.00 3.69
72 73 1.345415 TGTCCCTCGTTTCCTGTTACC 59.655 52.381 0.00 0.00 0.00 2.85
73 74 2.410939 GTGTCCCTCGTTTCCTGTTAC 58.589 52.381 0.00 0.00 0.00 2.50
74 75 1.000060 CGTGTCCCTCGTTTCCTGTTA 60.000 52.381 0.00 0.00 0.00 2.41
75 76 0.249741 CGTGTCCCTCGTTTCCTGTT 60.250 55.000 0.00 0.00 0.00 3.16
76 77 1.366366 CGTGTCCCTCGTTTCCTGT 59.634 57.895 0.00 0.00 0.00 4.00
77 78 1.374252 CCGTGTCCCTCGTTTCCTG 60.374 63.158 0.00 0.00 0.00 3.86
78 79 1.835712 ACCGTGTCCCTCGTTTCCT 60.836 57.895 0.00 0.00 0.00 3.36
79 80 1.666872 CACCGTGTCCCTCGTTTCC 60.667 63.158 0.00 0.00 0.00 3.13
80 81 0.531311 AACACCGTGTCCCTCGTTTC 60.531 55.000 4.23 0.00 0.00 2.78
81 82 0.107557 AAACACCGTGTCCCTCGTTT 60.108 50.000 4.23 0.00 0.00 3.60
82 83 0.752054 TAAACACCGTGTCCCTCGTT 59.248 50.000 4.23 0.00 0.00 3.85
83 84 0.032540 GTAAACACCGTGTCCCTCGT 59.967 55.000 4.23 0.00 0.00 4.18
84 85 0.316204 AGTAAACACCGTGTCCCTCG 59.684 55.000 4.23 0.00 0.00 4.63
85 86 1.342174 TGAGTAAACACCGTGTCCCTC 59.658 52.381 4.23 10.62 0.00 4.30
86 87 1.343465 CTGAGTAAACACCGTGTCCCT 59.657 52.381 4.23 1.15 0.00 4.20
87 88 1.607251 CCTGAGTAAACACCGTGTCCC 60.607 57.143 4.23 0.00 0.00 4.46
88 89 1.069668 ACCTGAGTAAACACCGTGTCC 59.930 52.381 4.23 0.00 0.00 4.02
89 90 2.521105 ACCTGAGTAAACACCGTGTC 57.479 50.000 4.23 0.00 0.00 3.67
90 91 2.940410 CAAACCTGAGTAAACACCGTGT 59.060 45.455 0.00 0.00 0.00 4.49
91 92 2.289547 CCAAACCTGAGTAAACACCGTG 59.710 50.000 0.00 0.00 0.00 4.94
92 93 2.567985 CCAAACCTGAGTAAACACCGT 58.432 47.619 0.00 0.00 0.00 4.83
93 94 1.877443 CCCAAACCTGAGTAAACACCG 59.123 52.381 0.00 0.00 0.00 4.94
94 95 1.611977 GCCCAAACCTGAGTAAACACC 59.388 52.381 0.00 0.00 0.00 4.16
95 96 1.611977 GGCCCAAACCTGAGTAAACAC 59.388 52.381 0.00 0.00 0.00 3.32
96 97 1.479757 GGGCCCAAACCTGAGTAAACA 60.480 52.381 19.95 0.00 0.00 2.83
97 98 1.203013 AGGGCCCAAACCTGAGTAAAC 60.203 52.381 27.56 0.00 36.85 2.01
98 99 1.074889 GAGGGCCCAAACCTGAGTAAA 59.925 52.381 27.56 0.00 38.79 2.01
99 100 0.696501 GAGGGCCCAAACCTGAGTAA 59.303 55.000 27.56 0.00 38.79 2.24
100 101 0.178873 AGAGGGCCCAAACCTGAGTA 60.179 55.000 27.56 0.00 38.79 2.59
101 102 1.464198 AGAGGGCCCAAACCTGAGT 60.464 57.895 27.56 0.00 38.79 3.41
102 103 1.204113 AGAGAGGGCCCAAACCTGAG 61.204 60.000 27.56 0.00 38.79 3.35
103 104 0.118346 TAGAGAGGGCCCAAACCTGA 59.882 55.000 27.56 0.00 38.79 3.86
104 105 0.991920 TTAGAGAGGGCCCAAACCTG 59.008 55.000 27.56 0.00 38.79 4.00
105 106 1.203440 TCTTAGAGAGGGCCCAAACCT 60.203 52.381 27.56 17.20 42.18 3.50
106 107 1.210722 CTCTTAGAGAGGGCCCAAACC 59.789 57.143 27.56 10.11 38.67 3.27
107 108 2.700722 CTCTTAGAGAGGGCCCAAAC 57.299 55.000 27.56 15.15 38.67 2.93
116 117 6.321945 GGAGTAGGGTTTTACCTCTTAGAGAG 59.678 46.154 11.32 3.61 42.09 3.20
117 118 6.010918 AGGAGTAGGGTTTTACCTCTTAGAGA 60.011 42.308 11.32 0.00 42.09 3.10
118 119 6.097129 CAGGAGTAGGGTTTTACCTCTTAGAG 59.903 46.154 1.56 1.56 42.09 2.43
119 120 5.956563 CAGGAGTAGGGTTTTACCTCTTAGA 59.043 44.000 0.00 0.00 42.09 2.10
120 121 5.395435 GCAGGAGTAGGGTTTTACCTCTTAG 60.395 48.000 0.00 0.00 42.09 2.18
121 122 4.468868 GCAGGAGTAGGGTTTTACCTCTTA 59.531 45.833 0.00 0.00 42.09 2.10
122 123 3.263681 GCAGGAGTAGGGTTTTACCTCTT 59.736 47.826 0.00 0.00 42.09 2.85
123 124 2.838813 GCAGGAGTAGGGTTTTACCTCT 59.161 50.000 0.00 0.00 42.09 3.69
124 125 2.838813 AGCAGGAGTAGGGTTTTACCTC 59.161 50.000 0.00 0.00 42.09 3.85
125 126 2.838813 GAGCAGGAGTAGGGTTTTACCT 59.161 50.000 0.00 0.00 44.75 3.08
126 127 2.418334 CGAGCAGGAGTAGGGTTTTACC 60.418 54.545 0.00 0.00 37.60 2.85
127 128 2.494870 TCGAGCAGGAGTAGGGTTTTAC 59.505 50.000 0.00 0.00 0.00 2.01
128 129 2.811410 TCGAGCAGGAGTAGGGTTTTA 58.189 47.619 0.00 0.00 0.00 1.52
129 130 1.640917 TCGAGCAGGAGTAGGGTTTT 58.359 50.000 0.00 0.00 0.00 2.43
130 131 1.867363 ATCGAGCAGGAGTAGGGTTT 58.133 50.000 0.00 0.00 0.00 3.27
131 132 1.867363 AATCGAGCAGGAGTAGGGTT 58.133 50.000 0.00 0.00 0.00 4.11
132 133 2.750141 TAATCGAGCAGGAGTAGGGT 57.250 50.000 0.00 0.00 0.00 4.34
133 134 5.449314 CGAATATAATCGAGCAGGAGTAGGG 60.449 48.000 4.08 0.00 45.48 3.53
134 135 5.354513 TCGAATATAATCGAGCAGGAGTAGG 59.645 44.000 8.81 0.00 46.12 3.18
135 136 6.424176 TCGAATATAATCGAGCAGGAGTAG 57.576 41.667 8.81 0.00 46.12 2.57
152 153 9.463443 CAACTCTGTAATCATACACATCGAATA 57.537 33.333 0.00 0.00 37.11 1.75
153 154 8.197439 TCAACTCTGTAATCATACACATCGAAT 58.803 33.333 0.00 0.00 37.11 3.34
154 155 7.543756 TCAACTCTGTAATCATACACATCGAA 58.456 34.615 0.00 0.00 37.11 3.71
155 156 7.095695 TCAACTCTGTAATCATACACATCGA 57.904 36.000 0.00 0.00 37.11 3.59
156 157 7.864882 AGATCAACTCTGTAATCATACACATCG 59.135 37.037 0.00 0.00 37.11 3.84
158 159 9.973450 GTAGATCAACTCTGTAATCATACACAT 57.027 33.333 0.00 0.00 37.11 3.21
159 160 8.414003 GGTAGATCAACTCTGTAATCATACACA 58.586 37.037 0.00 0.00 37.11 3.72
160 161 8.634444 AGGTAGATCAACTCTGTAATCATACAC 58.366 37.037 0.00 0.00 37.11 2.90
161 162 8.768501 AGGTAGATCAACTCTGTAATCATACA 57.231 34.615 0.00 0.00 39.70 2.29
162 163 8.018520 CGAGGTAGATCAACTCTGTAATCATAC 58.981 40.741 0.00 0.00 35.28 2.39
163 164 7.937394 TCGAGGTAGATCAACTCTGTAATCATA 59.063 37.037 0.00 0.00 35.28 2.15
164 165 6.773200 TCGAGGTAGATCAACTCTGTAATCAT 59.227 38.462 0.00 0.00 35.28 2.45
165 166 6.120220 TCGAGGTAGATCAACTCTGTAATCA 58.880 40.000 0.00 0.00 35.28 2.57
166 167 6.483974 TCTCGAGGTAGATCAACTCTGTAATC 59.516 42.308 13.56 0.00 35.28 1.75
167 168 6.358178 TCTCGAGGTAGATCAACTCTGTAAT 58.642 40.000 13.56 0.00 35.28 1.89
168 169 5.742063 TCTCGAGGTAGATCAACTCTGTAA 58.258 41.667 13.56 0.00 35.28 2.41
169 170 5.354842 TCTCGAGGTAGATCAACTCTGTA 57.645 43.478 13.56 0.00 35.28 2.74
170 171 4.223556 TCTCGAGGTAGATCAACTCTGT 57.776 45.455 13.56 0.00 35.28 3.41
179 180 6.071672 CCACAACATATGATCTCGAGGTAGAT 60.072 42.308 13.56 3.72 38.95 1.98
180 181 5.241728 CCACAACATATGATCTCGAGGTAGA 59.758 44.000 13.56 0.00 0.00 2.59
181 182 5.010112 ACCACAACATATGATCTCGAGGTAG 59.990 44.000 13.56 0.00 0.00 3.18
182 183 4.893524 ACCACAACATATGATCTCGAGGTA 59.106 41.667 13.56 0.00 0.00 3.08
183 184 3.706594 ACCACAACATATGATCTCGAGGT 59.293 43.478 13.56 4.76 0.00 3.85
184 185 4.038522 AGACCACAACATATGATCTCGAGG 59.961 45.833 13.56 4.48 0.00 4.63
185 186 5.193663 AGACCACAACATATGATCTCGAG 57.806 43.478 10.38 5.93 0.00 4.04
186 187 6.709018 TTAGACCACAACATATGATCTCGA 57.291 37.500 10.38 0.00 0.00 4.04
187 188 7.621991 GTTTTAGACCACAACATATGATCTCG 58.378 38.462 10.38 0.00 0.00 4.04
211 212 8.894592 ATGACATTATTCATCATACCCTTAGGT 58.105 33.333 0.00 0.00 40.05 3.08
244 245 0.540830 AGGGCCAGGCTAGTCGATAG 60.541 60.000 12.43 0.00 34.31 2.08
245 246 0.827925 CAGGGCCAGGCTAGTCGATA 60.828 60.000 12.43 0.00 0.00 2.92
246 247 2.136878 CAGGGCCAGGCTAGTCGAT 61.137 63.158 12.43 0.00 0.00 3.59
247 248 2.759973 CAGGGCCAGGCTAGTCGA 60.760 66.667 12.43 0.00 0.00 4.20
248 249 3.854669 CCAGGGCCAGGCTAGTCG 61.855 72.222 12.43 0.00 0.00 4.18
255 256 3.624777 CATTATATAAGCCAGGGCCAGG 58.375 50.000 11.26 11.26 43.17 4.45
256 257 3.019564 GCATTATATAAGCCAGGGCCAG 58.980 50.000 6.18 0.00 43.17 4.85
257 258 2.378208 TGCATTATATAAGCCAGGGCCA 59.622 45.455 6.18 0.00 43.17 5.36
258 259 2.755103 GTGCATTATATAAGCCAGGGCC 59.245 50.000 6.70 0.00 43.17 5.80
259 260 2.755103 GGTGCATTATATAAGCCAGGGC 59.245 50.000 0.97 0.97 42.33 5.19
260 261 4.012374 CTGGTGCATTATATAAGCCAGGG 58.988 47.826 19.72 6.63 38.56 4.45
261 262 4.910195 TCTGGTGCATTATATAAGCCAGG 58.090 43.478 23.32 13.54 41.49 4.45
262 263 4.940046 CCTCTGGTGCATTATATAAGCCAG 59.060 45.833 20.60 20.60 42.26 4.85
263 264 4.807303 GCCTCTGGTGCATTATATAAGCCA 60.807 45.833 1.02 6.13 0.00 4.75
264 265 3.691609 GCCTCTGGTGCATTATATAAGCC 59.308 47.826 1.02 2.14 0.00 4.35
265 266 3.691609 GGCCTCTGGTGCATTATATAAGC 59.308 47.826 0.00 5.80 0.00 3.09
266 267 5.171339 AGGCCTCTGGTGCATTATATAAG 57.829 43.478 0.00 0.00 0.00 1.73
267 268 5.189736 CCTAGGCCTCTGGTGCATTATATAA 59.810 44.000 9.68 0.00 0.00 0.98
268 269 4.716784 CCTAGGCCTCTGGTGCATTATATA 59.283 45.833 9.68 0.00 0.00 0.86
269 270 3.521126 CCTAGGCCTCTGGTGCATTATAT 59.479 47.826 9.68 0.00 0.00 0.86
270 271 2.906389 CCTAGGCCTCTGGTGCATTATA 59.094 50.000 9.68 0.00 0.00 0.98
271 272 1.701847 CCTAGGCCTCTGGTGCATTAT 59.298 52.381 9.68 0.00 0.00 1.28
272 273 1.131638 CCTAGGCCTCTGGTGCATTA 58.868 55.000 9.68 0.00 0.00 1.90
273 274 0.621571 TCCTAGGCCTCTGGTGCATT 60.622 55.000 9.68 0.00 0.00 3.56
274 275 0.401105 ATCCTAGGCCTCTGGTGCAT 60.401 55.000 9.68 0.00 0.00 3.96
275 276 0.264657 TATCCTAGGCCTCTGGTGCA 59.735 55.000 9.68 0.00 0.00 4.57
276 277 1.070914 GTTATCCTAGGCCTCTGGTGC 59.929 57.143 9.68 2.12 0.00 5.01
277 278 2.398588 TGTTATCCTAGGCCTCTGGTG 58.601 52.381 9.68 0.00 0.00 4.17
278 279 2.868964 TGTTATCCTAGGCCTCTGGT 57.131 50.000 9.68 0.00 0.00 4.00
279 280 3.309296 TCTTGTTATCCTAGGCCTCTGG 58.691 50.000 9.68 14.09 0.00 3.86
280 281 3.964031 ACTCTTGTTATCCTAGGCCTCTG 59.036 47.826 9.68 3.03 0.00 3.35
281 282 4.219919 GACTCTTGTTATCCTAGGCCTCT 58.780 47.826 9.68 0.00 0.00 3.69
282 283 3.322541 GGACTCTTGTTATCCTAGGCCTC 59.677 52.174 9.68 0.00 32.21 4.70
283 284 3.051727 AGGACTCTTGTTATCCTAGGCCT 60.052 47.826 11.78 11.78 41.22 5.19
284 285 3.310193 AGGACTCTTGTTATCCTAGGCC 58.690 50.000 2.96 0.00 41.22 5.19
288 289 6.244552 TCGACTAGGACTCTTGTTATCCTA 57.755 41.667 0.00 0.00 42.92 2.94
289 290 5.113446 TCGACTAGGACTCTTGTTATCCT 57.887 43.478 0.00 0.00 45.12 3.24
290 291 5.831702 TTCGACTAGGACTCTTGTTATCC 57.168 43.478 0.00 0.00 0.00 2.59
291 292 7.928103 TGTATTCGACTAGGACTCTTGTTATC 58.072 38.462 0.00 0.00 0.00 1.75
292 293 7.876936 TGTATTCGACTAGGACTCTTGTTAT 57.123 36.000 0.00 0.00 0.00 1.89
293 294 7.876936 ATGTATTCGACTAGGACTCTTGTTA 57.123 36.000 0.00 0.00 0.00 2.41
294 295 6.777213 ATGTATTCGACTAGGACTCTTGTT 57.223 37.500 0.00 0.00 0.00 2.83
295 296 6.405953 CCAATGTATTCGACTAGGACTCTTGT 60.406 42.308 0.00 0.00 0.00 3.16
296 297 5.980116 CCAATGTATTCGACTAGGACTCTTG 59.020 44.000 0.00 0.00 0.00 3.02
297 298 5.657302 ACCAATGTATTCGACTAGGACTCTT 59.343 40.000 0.00 0.00 0.00 2.85
298 299 5.067936 CACCAATGTATTCGACTAGGACTCT 59.932 44.000 0.00 0.00 0.00 3.24
299 300 5.282510 CACCAATGTATTCGACTAGGACTC 58.717 45.833 0.00 0.00 0.00 3.36
300 301 4.099573 CCACCAATGTATTCGACTAGGACT 59.900 45.833 0.00 0.00 0.00 3.85
301 302 4.098960 TCCACCAATGTATTCGACTAGGAC 59.901 45.833 0.00 0.00 0.00 3.85
302 303 4.283337 TCCACCAATGTATTCGACTAGGA 58.717 43.478 0.00 0.00 0.00 2.94
303 304 4.341235 TCTCCACCAATGTATTCGACTAGG 59.659 45.833 0.00 0.00 0.00 3.02
304 305 5.508153 CCTCTCCACCAATGTATTCGACTAG 60.508 48.000 0.00 0.00 0.00 2.57
305 306 4.341235 CCTCTCCACCAATGTATTCGACTA 59.659 45.833 0.00 0.00 0.00 2.59
306 307 3.133003 CCTCTCCACCAATGTATTCGACT 59.867 47.826 0.00 0.00 0.00 4.18
307 308 3.132289 TCCTCTCCACCAATGTATTCGAC 59.868 47.826 0.00 0.00 0.00 4.20
308 309 3.371034 TCCTCTCCACCAATGTATTCGA 58.629 45.455 0.00 0.00 0.00 3.71
309 310 3.133003 ACTCCTCTCCACCAATGTATTCG 59.867 47.826 0.00 0.00 0.00 3.34
310 311 4.443598 GGACTCCTCTCCACCAATGTATTC 60.444 50.000 0.00 0.00 0.00 1.75
311 312 3.456277 GGACTCCTCTCCACCAATGTATT 59.544 47.826 0.00 0.00 0.00 1.89
312 313 3.041946 GGACTCCTCTCCACCAATGTAT 58.958 50.000 0.00 0.00 0.00 2.29
313 314 2.044492 AGGACTCCTCTCCACCAATGTA 59.956 50.000 0.00 0.00 31.94 2.29
314 315 1.203364 AGGACTCCTCTCCACCAATGT 60.203 52.381 0.00 0.00 31.94 2.71
315 316 1.577736 AGGACTCCTCTCCACCAATG 58.422 55.000 0.00 0.00 31.94 2.82
316 317 1.912043 CAAGGACTCCTCTCCACCAAT 59.088 52.381 0.00 0.00 30.89 3.16
317 318 1.352083 CAAGGACTCCTCTCCACCAA 58.648 55.000 0.00 0.00 30.89 3.67
318 319 0.191064 ACAAGGACTCCTCTCCACCA 59.809 55.000 0.00 0.00 30.89 4.17
319 320 0.899019 GACAAGGACTCCTCTCCACC 59.101 60.000 0.00 0.00 30.89 4.61
320 321 1.931635 AGACAAGGACTCCTCTCCAC 58.068 55.000 0.00 0.00 30.89 4.02
321 322 2.158310 TCAAGACAAGGACTCCTCTCCA 60.158 50.000 0.00 0.00 30.89 3.86
322 323 2.530701 TCAAGACAAGGACTCCTCTCC 58.469 52.381 0.00 0.00 30.89 3.71
323 324 3.766591 TGATCAAGACAAGGACTCCTCTC 59.233 47.826 0.00 0.00 30.89 3.20
324 325 3.513515 GTGATCAAGACAAGGACTCCTCT 59.486 47.826 0.00 0.00 30.89 3.69
325 326 3.368948 GGTGATCAAGACAAGGACTCCTC 60.369 52.174 0.00 0.00 30.89 3.71
326 327 2.569404 GGTGATCAAGACAAGGACTCCT 59.431 50.000 0.00 0.00 33.87 3.69
327 328 2.303022 TGGTGATCAAGACAAGGACTCC 59.697 50.000 0.00 0.00 0.00 3.85
328 329 3.685139 TGGTGATCAAGACAAGGACTC 57.315 47.619 0.00 0.00 0.00 3.36
339 340 6.962182 AGATTCCATAAGACTTGGTGATCAA 58.038 36.000 0.00 0.00 35.64 2.57
340 341 6.566079 AGATTCCATAAGACTTGGTGATCA 57.434 37.500 0.00 0.00 35.64 2.92
341 342 6.484977 GGAAGATTCCATAAGACTTGGTGATC 59.515 42.308 6.74 1.98 46.76 2.92
342 343 6.360618 GGAAGATTCCATAAGACTTGGTGAT 58.639 40.000 6.74 0.00 46.76 3.06
343 344 5.745227 GGAAGATTCCATAAGACTTGGTGA 58.255 41.667 6.74 0.00 46.76 4.02
353 354 6.994257 CCGCACACGAGGAAGATTCCATAA 62.994 50.000 13.90 0.00 44.14 1.90
354 355 5.596934 CCGCACACGAGGAAGATTCCATA 62.597 52.174 13.90 0.00 44.14 2.74
355 356 4.935736 CCGCACACGAGGAAGATTCCAT 62.936 54.545 13.90 0.00 44.14 3.41
356 357 3.693128 CCGCACACGAGGAAGATTCCA 62.693 57.143 13.90 0.00 44.14 3.53
357 358 1.084370 CCGCACACGAGGAAGATTCC 61.084 60.000 3.25 3.25 43.93 3.01
358 359 1.696832 GCCGCACACGAGGAAGATTC 61.697 60.000 0.00 0.00 43.93 2.52
359 360 1.741770 GCCGCACACGAGGAAGATT 60.742 57.895 0.00 0.00 43.93 2.40
360 361 2.125512 GCCGCACACGAGGAAGAT 60.126 61.111 0.00 0.00 43.93 2.40
361 362 3.158537 TTGCCGCACACGAGGAAGA 62.159 57.895 0.00 0.00 43.93 2.87
362 363 2.664851 TTGCCGCACACGAGGAAG 60.665 61.111 0.00 0.00 43.93 3.46
363 364 2.664851 CTTGCCGCACACGAGGAA 60.665 61.111 0.00 0.00 43.93 3.36
364 365 4.680237 CCTTGCCGCACACGAGGA 62.680 66.667 3.05 0.00 43.93 3.71
377 378 3.058160 CACTTCGGGCAGCCCTTG 61.058 66.667 28.80 19.04 42.67 3.61
378 379 4.351054 CCACTTCGGGCAGCCCTT 62.351 66.667 28.80 6.93 42.67 3.95
386 387 2.124570 CTCATGGGCCACTTCGGG 60.125 66.667 9.28 0.00 34.06 5.14
387 388 1.746615 CACTCATGGGCCACTTCGG 60.747 63.158 9.28 0.00 38.11 4.30
388 389 0.321564 TTCACTCATGGGCCACTTCG 60.322 55.000 9.28 0.00 0.00 3.79
389 390 1.168714 GTTCACTCATGGGCCACTTC 58.831 55.000 9.28 0.00 0.00 3.01
390 391 0.251341 GGTTCACTCATGGGCCACTT 60.251 55.000 9.28 0.00 0.00 3.16
391 392 1.380302 GGTTCACTCATGGGCCACT 59.620 57.895 9.28 0.00 0.00 4.00
392 393 2.040544 CGGTTCACTCATGGGCCAC 61.041 63.158 9.28 0.00 0.00 5.01
393 394 2.350895 CGGTTCACTCATGGGCCA 59.649 61.111 9.61 9.61 0.00 5.36
394 395 3.134127 GCGGTTCACTCATGGGCC 61.134 66.667 0.00 0.00 0.00 5.80
395 396 3.134127 GGCGGTTCACTCATGGGC 61.134 66.667 0.00 0.00 0.00 5.36
396 397 1.077501 ATGGCGGTTCACTCATGGG 60.078 57.895 0.00 0.00 0.00 4.00
397 398 1.378882 CCATGGCGGTTCACTCATGG 61.379 60.000 0.00 6.77 46.88 3.66
398 399 1.378882 CCCATGGCGGTTCACTCATG 61.379 60.000 6.09 0.00 37.37 3.07
399 400 1.077501 CCCATGGCGGTTCACTCAT 60.078 57.895 6.09 0.00 0.00 2.90
400 401 2.350895 CCCATGGCGGTTCACTCA 59.649 61.111 6.09 0.00 0.00 3.41
401 402 2.438434 CCCCATGGCGGTTCACTC 60.438 66.667 6.09 0.00 0.00 3.51
402 403 4.047125 CCCCCATGGCGGTTCACT 62.047 66.667 6.09 0.00 0.00 3.41
403 404 4.360405 ACCCCCATGGCGGTTCAC 62.360 66.667 15.80 0.00 37.83 3.18
404 405 4.041762 GACCCCCATGGCGGTTCA 62.042 66.667 22.15 0.00 37.83 3.18
405 406 4.815108 GGACCCCCATGGCGGTTC 62.815 72.222 22.15 16.89 37.83 3.62
419 420 3.917760 CTGGATCGGGCCGAGGAC 61.918 72.222 33.82 24.52 39.91 3.85
422 423 4.598894 CAGCTGGATCGGGCCGAG 62.599 72.222 33.82 20.90 39.91 4.63
424 425 3.466791 AATCAGCTGGATCGGGCCG 62.467 63.158 22.51 22.51 34.28 6.13
425 426 1.895707 CAATCAGCTGGATCGGGCC 60.896 63.158 15.13 0.00 34.28 5.80
426 427 1.895707 CCAATCAGCTGGATCGGGC 60.896 63.158 15.13 0.99 38.96 6.13
427 428 1.228063 CCCAATCAGCTGGATCGGG 60.228 63.158 15.13 14.68 43.79 5.14
428 429 0.250209 CTCCCAATCAGCTGGATCGG 60.250 60.000 15.13 9.46 38.96 4.18
429 430 0.755079 TCTCCCAATCAGCTGGATCG 59.245 55.000 15.13 0.00 38.96 3.69
430 431 1.539929 CGTCTCCCAATCAGCTGGATC 60.540 57.143 15.13 0.00 38.96 3.36
431 432 0.467384 CGTCTCCCAATCAGCTGGAT 59.533 55.000 15.13 3.26 38.96 3.41
432 433 0.614697 TCGTCTCCCAATCAGCTGGA 60.615 55.000 15.13 1.10 38.96 3.86
433 434 0.460987 GTCGTCTCCCAATCAGCTGG 60.461 60.000 15.13 0.00 36.10 4.85
434 435 0.803768 CGTCGTCTCCCAATCAGCTG 60.804 60.000 7.63 7.63 0.00 4.24
435 436 1.251527 ACGTCGTCTCCCAATCAGCT 61.252 55.000 0.00 0.00 0.00 4.24
436 437 1.078759 CACGTCGTCTCCCAATCAGC 61.079 60.000 0.00 0.00 0.00 4.26
437 438 0.458543 CCACGTCGTCTCCCAATCAG 60.459 60.000 0.00 0.00 0.00 2.90
438 439 1.183030 ACCACGTCGTCTCCCAATCA 61.183 55.000 0.00 0.00 0.00 2.57
439 440 0.736325 CACCACGTCGTCTCCCAATC 60.736 60.000 0.00 0.00 0.00 2.67
440 441 1.183030 TCACCACGTCGTCTCCCAAT 61.183 55.000 0.00 0.00 0.00 3.16
441 442 1.802337 CTCACCACGTCGTCTCCCAA 61.802 60.000 0.00 0.00 0.00 4.12
442 443 2.203379 TCACCACGTCGTCTCCCA 60.203 61.111 0.00 0.00 0.00 4.37
443 444 0.957395 TACTCACCACGTCGTCTCCC 60.957 60.000 0.00 0.00 0.00 4.30
444 445 0.167689 GTACTCACCACGTCGTCTCC 59.832 60.000 0.00 0.00 0.00 3.71
445 446 0.167689 GGTACTCACCACGTCGTCTC 59.832 60.000 0.00 0.00 45.04 3.36
446 447 2.251600 GGTACTCACCACGTCGTCT 58.748 57.895 0.00 0.00 45.04 4.18
447 448 4.855596 GGTACTCACCACGTCGTC 57.144 61.111 0.00 0.00 45.04 4.20
455 456 0.337428 TGGACTAGGGGGTACTCACC 59.663 60.000 0.00 0.00 44.96 4.02
456 457 2.108970 CTTGGACTAGGGGGTACTCAC 58.891 57.143 0.00 0.00 0.00 3.51
457 458 2.005350 TCTTGGACTAGGGGGTACTCA 58.995 52.381 0.00 0.00 0.00 3.41
458 459 2.292061 TGTCTTGGACTAGGGGGTACTC 60.292 54.545 0.00 0.00 33.15 2.59
459 460 1.720533 TGTCTTGGACTAGGGGGTACT 59.279 52.381 0.00 0.00 33.15 2.73
460 461 1.829849 GTGTCTTGGACTAGGGGGTAC 59.170 57.143 0.00 0.00 33.15 3.34
461 462 1.273438 GGTGTCTTGGACTAGGGGGTA 60.273 57.143 0.00 0.00 33.15 3.69
462 463 0.546988 GGTGTCTTGGACTAGGGGGT 60.547 60.000 0.00 0.00 33.15 4.95
463 464 1.614241 CGGTGTCTTGGACTAGGGGG 61.614 65.000 0.00 0.00 33.15 5.40
464 465 0.903454 ACGGTGTCTTGGACTAGGGG 60.903 60.000 0.00 0.00 33.15 4.79
465 466 0.531200 GACGGTGTCTTGGACTAGGG 59.469 60.000 0.00 0.00 33.15 3.53
466 467 1.254026 TGACGGTGTCTTGGACTAGG 58.746 55.000 0.00 0.00 33.15 3.02
467 468 2.673833 GTTGACGGTGTCTTGGACTAG 58.326 52.381 0.00 0.00 33.15 2.57
468 469 1.001048 CGTTGACGGTGTCTTGGACTA 60.001 52.381 0.00 0.00 33.15 2.59
469 470 0.249322 CGTTGACGGTGTCTTGGACT 60.249 55.000 0.00 0.00 33.15 3.85
470 471 2.222592 CGTTGACGGTGTCTTGGAC 58.777 57.895 0.00 0.00 33.15 4.02
471 472 4.742274 CGTTGACGGTGTCTTGGA 57.258 55.556 0.00 0.00 33.15 3.53
544 545 2.202623 GGCGACGACCAGCTACAG 60.203 66.667 0.00 0.00 0.00 2.74
587 588 1.806542 CACCGGAGTTCTTCAATGGTG 59.193 52.381 9.46 0.00 38.16 4.17
602 603 4.489771 GGTGCAGGGGATCACCGG 62.490 72.222 10.18 10.18 42.67 5.28
613 614 2.677228 CTTAGGGGTGGGGTGCAG 59.323 66.667 0.00 0.00 0.00 4.41
670 671 5.431765 TCTTAGAAGAATCCATTGCCTCAC 58.568 41.667 0.00 0.00 30.73 3.51
674 675 9.598517 CTATCTATCTTAGAAGAATCCATTGCC 57.401 37.037 0.00 0.00 38.77 4.52
682 683 9.023962 CAGCTCCACTATCTATCTTAGAAGAAT 57.976 37.037 0.00 0.00 38.77 2.40
699 700 2.654079 CCGAAGAGGCAGCTCCACT 61.654 63.158 5.21 1.57 37.37 4.00
704 705 0.107945 GTTCATCCGAAGAGGCAGCT 60.108 55.000 0.00 0.00 40.77 4.24
705 706 0.107945 AGTTCATCCGAAGAGGCAGC 60.108 55.000 0.00 0.00 40.77 5.25
707 708 2.735151 TCTAGTTCATCCGAAGAGGCA 58.265 47.619 0.00 0.00 40.77 4.75
716 717 5.003804 TCAGCCACTTTTTCTAGTTCATCC 58.996 41.667 0.00 0.00 0.00 3.51
741 742 1.880027 GTGCCTGGAAATTGTCTTCGT 59.120 47.619 0.00 0.00 0.00 3.85
872 873 9.914131 GGGCTCAATTTGTTTTATAATCCTATC 57.086 33.333 0.00 0.00 0.00 2.08
873 874 9.432982 TGGGCTCAATTTGTTTTATAATCCTAT 57.567 29.630 0.00 0.00 0.00 2.57
874 875 8.830915 TGGGCTCAATTTGTTTTATAATCCTA 57.169 30.769 0.00 0.00 0.00 2.94
876 877 8.785329 TTTGGGCTCAATTTGTTTTATAATCC 57.215 30.769 0.00 0.00 32.28 3.01
883 884 7.548427 CCAAAAATTTTGGGCTCAATTTGTTTT 59.452 29.630 25.54 11.46 33.73 2.43
884 885 7.040494 CCAAAAATTTTGGGCTCAATTTGTTT 58.960 30.769 25.54 6.80 33.73 2.83
897 898 6.826668 ACCTAGTTTCTCCCAAAAATTTTGG 58.173 36.000 26.11 26.11 39.25 3.28
898 899 9.476202 CTTACCTAGTTTCTCCCAAAAATTTTG 57.524 33.333 11.24 11.24 0.00 2.44
899 900 9.429109 TCTTACCTAGTTTCTCCCAAAAATTTT 57.571 29.630 0.00 0.00 0.00 1.82
900 901 9.078990 CTCTTACCTAGTTTCTCCCAAAAATTT 57.921 33.333 0.00 0.00 0.00 1.82
901 902 7.670140 CCTCTTACCTAGTTTCTCCCAAAAATT 59.330 37.037 0.00 0.00 0.00 1.82
902 903 7.175797 CCTCTTACCTAGTTTCTCCCAAAAAT 58.824 38.462 0.00 0.00 0.00 1.82
903 904 6.102174 ACCTCTTACCTAGTTTCTCCCAAAAA 59.898 38.462 0.00 0.00 0.00 1.94
904 905 5.609708 ACCTCTTACCTAGTTTCTCCCAAAA 59.390 40.000 0.00 0.00 0.00 2.44
905 906 5.160386 ACCTCTTACCTAGTTTCTCCCAAA 58.840 41.667 0.00 0.00 0.00 3.28
906 907 4.759953 ACCTCTTACCTAGTTTCTCCCAA 58.240 43.478 0.00 0.00 0.00 4.12
907 908 4.415224 ACCTCTTACCTAGTTTCTCCCA 57.585 45.455 0.00 0.00 0.00 4.37
908 909 5.363292 CCTTACCTCTTACCTAGTTTCTCCC 59.637 48.000 0.00 0.00 0.00 4.30
909 910 5.363292 CCCTTACCTCTTACCTAGTTTCTCC 59.637 48.000 0.00 0.00 0.00 3.71
910 911 5.957168 ACCCTTACCTCTTACCTAGTTTCTC 59.043 44.000 0.00 0.00 0.00 2.87
911 912 5.913277 ACCCTTACCTCTTACCTAGTTTCT 58.087 41.667 0.00 0.00 0.00 2.52
912 913 5.163571 CGACCCTTACCTCTTACCTAGTTTC 60.164 48.000 0.00 0.00 0.00 2.78
913 914 4.708909 CGACCCTTACCTCTTACCTAGTTT 59.291 45.833 0.00 0.00 0.00 2.66
914 915 4.018050 TCGACCCTTACCTCTTACCTAGTT 60.018 45.833 0.00 0.00 0.00 2.24
915 916 3.525199 TCGACCCTTACCTCTTACCTAGT 59.475 47.826 0.00 0.00 0.00 2.57
916 917 4.162040 TCGACCCTTACCTCTTACCTAG 57.838 50.000 0.00 0.00 0.00 3.02
917 918 4.591321 TTCGACCCTTACCTCTTACCTA 57.409 45.455 0.00 0.00 0.00 3.08
918 919 3.463048 TTCGACCCTTACCTCTTACCT 57.537 47.619 0.00 0.00 0.00 3.08
919 920 4.081254 ACAATTCGACCCTTACCTCTTACC 60.081 45.833 0.00 0.00 0.00 2.85
920 921 4.868734 CACAATTCGACCCTTACCTCTTAC 59.131 45.833 0.00 0.00 0.00 2.34
921 922 4.081309 CCACAATTCGACCCTTACCTCTTA 60.081 45.833 0.00 0.00 0.00 2.10
922 923 3.307480 CCACAATTCGACCCTTACCTCTT 60.307 47.826 0.00 0.00 0.00 2.85
923 924 2.236395 CCACAATTCGACCCTTACCTCT 59.764 50.000 0.00 0.00 0.00 3.69
924 925 2.629051 CCACAATTCGACCCTTACCTC 58.371 52.381 0.00 0.00 0.00 3.85
925 926 1.280998 CCCACAATTCGACCCTTACCT 59.719 52.381 0.00 0.00 0.00 3.08
926 927 1.279846 TCCCACAATTCGACCCTTACC 59.720 52.381 0.00 0.00 0.00 2.85
927 928 2.235402 TCTCCCACAATTCGACCCTTAC 59.765 50.000 0.00 0.00 0.00 2.34
928 929 2.542550 TCTCCCACAATTCGACCCTTA 58.457 47.619 0.00 0.00 0.00 2.69
929 930 1.358152 TCTCCCACAATTCGACCCTT 58.642 50.000 0.00 0.00 0.00 3.95
930 931 1.358152 TTCTCCCACAATTCGACCCT 58.642 50.000 0.00 0.00 0.00 4.34
931 932 2.289565 GATTCTCCCACAATTCGACCC 58.710 52.381 0.00 0.00 0.00 4.46
932 933 2.289565 GGATTCTCCCACAATTCGACC 58.710 52.381 0.00 0.00 0.00 4.79
944 945 3.558033 AGTTACTCTCTCGGGATTCTCC 58.442 50.000 0.00 0.00 35.23 3.71
945 946 6.674066 CATTAGTTACTCTCTCGGGATTCTC 58.326 44.000 0.00 0.00 0.00 2.87
946 947 5.010213 GCATTAGTTACTCTCTCGGGATTCT 59.990 44.000 0.00 0.00 0.00 2.40
947 948 5.221263 TGCATTAGTTACTCTCTCGGGATTC 60.221 44.000 0.00 0.00 0.00 2.52
948 949 4.649674 TGCATTAGTTACTCTCTCGGGATT 59.350 41.667 0.00 0.00 0.00 3.01
949 950 4.215908 TGCATTAGTTACTCTCTCGGGAT 58.784 43.478 0.00 0.00 0.00 3.85
950 951 3.628008 TGCATTAGTTACTCTCTCGGGA 58.372 45.455 0.00 0.00 0.00 5.14
951 952 3.797184 GCTGCATTAGTTACTCTCTCGGG 60.797 52.174 0.00 0.00 0.00 5.14
1281 1791 4.554036 GCTGGATGAGGGCGGGAC 62.554 72.222 0.00 0.00 0.00 4.46
1502 2012 4.377760 AGGAGAGGACCGGCGGAA 62.378 66.667 35.78 0.00 34.73 4.30
1568 2078 4.899239 GGCAGATGGGCGAGGTCG 62.899 72.222 0.00 0.00 43.27 4.79
1638 2148 3.049080 GCCCGGCCATCTTCTTCCT 62.049 63.158 2.24 0.00 0.00 3.36
1763 2300 1.920835 GGTGAAGAGGCTGGGGTCT 60.921 63.158 0.00 0.00 0.00 3.85
1799 2336 3.382832 ACCTGAAGCCCTCCGACG 61.383 66.667 0.00 0.00 0.00 5.12
1902 2439 0.394488 TCTACAGAGCTGGAGGGACG 60.394 60.000 9.73 0.00 41.86 4.79
2035 2572 0.678048 GACACCCTGGCATCTTGACC 60.678 60.000 0.00 0.00 0.00 4.02
2184 2721 1.897615 GCCATGGCCATGCTCTCTC 60.898 63.158 36.08 17.42 37.49 3.20
2208 2745 0.530744 TCCTGAACCGGTCGATTGAG 59.469 55.000 8.04 0.00 0.00 3.02
2211 2748 2.012051 GCAATCCTGAACCGGTCGATT 61.012 52.381 8.04 10.30 0.00 3.34
2282 2819 0.868406 GCCAAGTTCGTCCTGACAAG 59.132 55.000 0.00 0.00 0.00 3.16
2359 2917 5.599999 ACTATATTGTGTGAGGAGTGGAC 57.400 43.478 0.00 0.00 0.00 4.02
2490 3061 0.823356 TGCAGACAGAAGGGTTTGCC 60.823 55.000 6.40 0.00 45.38 4.52
2523 3094 1.905922 GCGTGCAAACTCTCTCTGCC 61.906 60.000 0.00 0.00 35.13 4.85
2673 3244 2.325484 TCTTTGTCTGCTGTGGGACTA 58.675 47.619 0.00 0.00 34.01 2.59
2675 3246 1.967319 TTCTTTGTCTGCTGTGGGAC 58.033 50.000 0.00 0.00 0.00 4.46
2721 3292 6.101881 CCAAGGAAATTATCTCCCTACCTCTT 59.898 42.308 0.00 0.00 32.95 2.85
2723 3294 5.746361 GCCAAGGAAATTATCTCCCTACCTC 60.746 48.000 0.00 0.00 32.95 3.85
2751 3324 7.921745 GCCTAGTAGTATTAAGTGAACCAAGAG 59.078 40.741 0.00 0.00 0.00 2.85
2752 3325 7.398047 TGCCTAGTAGTATTAAGTGAACCAAGA 59.602 37.037 0.00 0.00 0.00 3.02
2860 3439 4.219115 TGGCAACACCCTTTTGATCTTAA 58.781 39.130 0.00 0.00 46.17 1.85
3051 3633 6.448852 TGCATGCATTAACAACATATCATCC 58.551 36.000 18.46 0.00 0.00 3.51
3074 3656 6.573664 TCTGGTCCACACATTTTTCTTATG 57.426 37.500 0.00 0.00 0.00 1.90
3078 3660 4.536765 ACTTCTGGTCCACACATTTTTCT 58.463 39.130 0.00 0.00 0.00 2.52
3079 3661 4.338118 TGACTTCTGGTCCACACATTTTTC 59.662 41.667 0.00 0.00 43.89 2.29
3095 3677 6.495181 TGATTGAACCTCTACTTCTGACTTCT 59.505 38.462 0.00 0.00 0.00 2.85
3103 3688 5.312120 TCGAGTGATTGAACCTCTACTTC 57.688 43.478 0.00 0.00 0.00 3.01
3116 3701 7.041167 TGTTCTTCATTTGTCATTCGAGTGATT 60.041 33.333 14.12 0.00 0.00 2.57
3138 3723 8.755696 TTTGCAGGTAAATAACATGATTGTTC 57.244 30.769 0.00 0.00 42.43 3.18
3250 3835 4.131596 CCCTTTCAAGTGAAAAGTCGGTA 58.868 43.478 7.80 0.00 42.72 4.02
3262 3847 3.074538 ACCAACTAGCATCCCTTTCAAGT 59.925 43.478 0.00 0.00 0.00 3.16
3280 3865 3.297134 AGGAAGCTTGACAAAGACCAA 57.703 42.857 2.10 0.00 35.19 3.67
3292 3877 2.512705 CTTCAGGCAGAAAGGAAGCTT 58.487 47.619 0.00 0.00 35.40 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.