Multiple sequence alignment - TraesCS7D01G223900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G223900 chr7D 100.000 3090 0 0 1 3090 184575628 184572539 0.000000e+00 5707.0
1 TraesCS7D01G223900 chr7D 82.680 1097 155 24 1000 2090 151791450 151790383 0.000000e+00 941.0
2 TraesCS7D01G223900 chr7D 91.040 346 30 1 1789 2134 184582214 184582558 1.680000e-127 466.0
3 TraesCS7D01G223900 chr7D 82.808 349 39 16 2307 2640 574916543 574916201 3.010000e-75 292.0
4 TraesCS7D01G223900 chr7D 85.185 216 29 2 1000 1212 151779519 151779304 5.190000e-53 219.0
5 TraesCS7D01G223900 chr7D 94.118 85 3 2 2193 2276 184573353 184573436 8.990000e-26 128.0
6 TraesCS7D01G223900 chr7B 96.219 1719 53 7 486 2200 154162471 154160761 0.000000e+00 2804.0
7 TraesCS7D01G223900 chr7B 81.769 1119 151 36 994 2090 113922550 113923637 0.000000e+00 887.0
8 TraesCS7D01G223900 chr7B 96.078 204 8 0 283 486 154162860 154162657 1.780000e-87 333.0
9 TraesCS7D01G223900 chr7B 80.745 322 54 8 2308 2624 33069336 33069018 8.560000e-61 244.0
10 TraesCS7D01G223900 chr7B 91.525 177 15 0 87 263 154163020 154162844 8.560000e-61 244.0
11 TraesCS7D01G223900 chr7B 86.175 217 24 4 1000 1210 113802830 113802614 2.400000e-56 230.0
12 TraesCS7D01G223900 chr7B 80.864 324 32 18 2691 2994 154160762 154160449 8.620000e-56 228.0
13 TraesCS7D01G223900 chr7B 85.185 216 29 2 1000 1212 113539831 113539616 5.190000e-53 219.0
14 TraesCS7D01G223900 chr7B 96.154 78 2 1 2199 2275 566639148 566639071 3.230000e-25 126.0
15 TraesCS7D01G223900 chr7B 87.129 101 9 2 2994 3090 154160406 154160306 9.060000e-21 111.0
16 TraesCS7D01G223900 chr7A 94.228 1230 62 7 977 2200 191665204 191663978 0.000000e+00 1869.0
17 TraesCS7D01G223900 chr7A 91.207 671 23 13 283 939 191666023 191665375 0.000000e+00 880.0
18 TraesCS7D01G223900 chr7A 81.149 1114 159 35 1000 2090 151961549 151960464 0.000000e+00 846.0
19 TraesCS7D01G223900 chr7A 86.026 780 106 1 1314 2090 152507428 152508207 0.000000e+00 833.0
20 TraesCS7D01G223900 chr7A 88.462 702 48 12 1126 1820 191693785 191694460 0.000000e+00 817.0
21 TraesCS7D01G223900 chr7A 79.907 1080 173 30 1023 2092 151874318 151875363 0.000000e+00 752.0
22 TraesCS7D01G223900 chr7A 96.066 305 10 2 2691 2994 191663944 191663641 2.140000e-136 496.0
23 TraesCS7D01G223900 chr7A 93.916 263 12 1 1 263 191666265 191666007 8.030000e-106 394.0
24 TraesCS7D01G223900 chr7A 85.581 215 28 2 1001 1212 152084470 152084684 4.010000e-54 222.0
25 TraesCS7D01G223900 chr1A 87.532 770 91 3 1318 2086 539323508 539324273 0.000000e+00 885.0
26 TraesCS7D01G223900 chr1D 86.581 775 95 6 1319 2090 439414977 439414209 0.000000e+00 846.0
27 TraesCS7D01G223900 chr1D 91.469 422 21 8 2280 2689 203869900 203869482 1.610000e-157 566.0
28 TraesCS7D01G223900 chr1D 93.548 93 4 2 2186 2277 5514444 5514353 1.490000e-28 137.0
29 TraesCS7D01G223900 chr1B 86.546 773 99 3 1319 2090 596248280 596247512 0.000000e+00 846.0
30 TraesCS7D01G223900 chr1B 86.385 213 26 2 1001 1210 596248584 596248372 2.400000e-56 230.0
31 TraesCS7D01G223900 chr1B 94.253 87 3 2 2192 2278 332084540 332084456 6.950000e-27 132.0
32 TraesCS7D01G223900 chr6D 91.529 425 24 5 2277 2689 3319633 3319209 2.670000e-160 575.0
33 TraesCS7D01G223900 chr2D 91.449 421 25 5 2280 2689 39438915 39439335 4.470000e-158 568.0
34 TraesCS7D01G223900 chr2D 89.549 421 32 9 2281 2689 49894804 49894384 9.820000e-145 523.0
35 TraesCS7D01G223900 chr3A 90.509 432 22 14 2274 2689 727176525 727176953 1.250000e-153 553.0
36 TraesCS7D01G223900 chr3A 90.698 43 4 0 1445 1487 655994548 655994506 1.200000e-04 58.4
37 TraesCS7D01G223900 chr4B 90.588 425 25 11 2281 2690 117181799 117182223 1.620000e-152 549.0
38 TraesCS7D01G223900 chr4B 89.731 409 29 10 2281 2678 91750350 91749944 7.640000e-141 510.0
39 TraesCS7D01G223900 chr2B 88.626 422 36 5 2280 2689 223099789 223099368 1.280000e-138 503.0
40 TraesCS7D01G223900 chr2B 97.436 78 1 1 2195 2271 417500841 417500764 6.950000e-27 132.0
41 TraesCS7D01G223900 chr2B 89.583 48 3 2 1659 1705 263812023 263811977 3.330000e-05 60.2
42 TraesCS7D01G223900 chr4A 85.432 405 43 14 2293 2687 60660452 60660850 1.030000e-109 407.0
43 TraesCS7D01G223900 chr6A 80.102 392 57 18 2307 2689 609113117 609113496 3.930000e-69 272.0
44 TraesCS7D01G223900 chr5D 94.318 88 2 2 2191 2278 63616066 63615982 6.950000e-27 132.0
45 TraesCS7D01G223900 chr5D 96.250 80 3 0 2199 2278 498669830 498669751 6.950000e-27 132.0
46 TraesCS7D01G223900 chr3D 96.296 81 2 1 2199 2278 110398389 110398469 6.950000e-27 132.0
47 TraesCS7D01G223900 chr4D 96.203 79 3 0 2193 2271 15786192 15786270 2.500000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G223900 chr7D 184572539 184575628 3089 True 5707.00 5707 100.00000 1 3090 1 chr7D.!!$R3 3089
1 TraesCS7D01G223900 chr7D 151790383 151791450 1067 True 941.00 941 82.68000 1000 2090 1 chr7D.!!$R2 1090
2 TraesCS7D01G223900 chr7B 113922550 113923637 1087 False 887.00 887 81.76900 994 2090 1 chr7B.!!$F1 1096
3 TraesCS7D01G223900 chr7B 154160306 154163020 2714 True 744.00 2804 90.36300 87 3090 5 chr7B.!!$R5 3003
4 TraesCS7D01G223900 chr7A 191663641 191666265 2624 True 909.75 1869 93.85425 1 2994 4 chr7A.!!$R2 2993
5 TraesCS7D01G223900 chr7A 151960464 151961549 1085 True 846.00 846 81.14900 1000 2090 1 chr7A.!!$R1 1090
6 TraesCS7D01G223900 chr7A 152507428 152508207 779 False 833.00 833 86.02600 1314 2090 1 chr7A.!!$F3 776
7 TraesCS7D01G223900 chr7A 191693785 191694460 675 False 817.00 817 88.46200 1126 1820 1 chr7A.!!$F4 694
8 TraesCS7D01G223900 chr7A 151874318 151875363 1045 False 752.00 752 79.90700 1023 2092 1 chr7A.!!$F1 1069
9 TraesCS7D01G223900 chr1A 539323508 539324273 765 False 885.00 885 87.53200 1318 2086 1 chr1A.!!$F1 768
10 TraesCS7D01G223900 chr1D 439414209 439414977 768 True 846.00 846 86.58100 1319 2090 1 chr1D.!!$R3 771
11 TraesCS7D01G223900 chr1B 596247512 596248584 1072 True 538.00 846 86.46550 1001 2090 2 chr1B.!!$R2 1089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.903454 TCACCCCTTCGTCCTTCCTC 60.903 60.0 0.0 0.0 0.0 3.71 F
129 130 1.196012 CTCCTCCAGACACTTACCCC 58.804 60.0 0.0 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1113 1461 1.073444 ACCATCTCCTCGCGGACTATA 59.927 52.381 6.13 0.0 34.92 1.31 R
2110 2495 0.591236 CAAACACTTGTTCCACGGCG 60.591 55.000 4.80 4.8 37.25 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 1.295746 GGTCACCCCTTCGTCCTTC 59.704 63.158 0.00 0.00 0.00 3.46
99 100 1.295746 GTCACCCCTTCGTCCTTCC 59.704 63.158 0.00 0.00 0.00 3.46
100 101 1.157751 TCACCCCTTCGTCCTTCCT 59.842 57.895 0.00 0.00 0.00 3.36
101 102 0.903454 TCACCCCTTCGTCCTTCCTC 60.903 60.000 0.00 0.00 0.00 3.71
129 130 1.196012 CTCCTCCAGACACTTACCCC 58.804 60.000 0.00 0.00 0.00 4.95
142 143 1.278127 CTTACCCCGCCGATGGATATT 59.722 52.381 0.00 0.00 0.00 1.28
237 238 9.461312 TGTTTATCAGGCAATGAGTTATAACTT 57.539 29.630 18.96 1.75 42.53 2.66
263 264 6.995686 TGTCTGTCAAATAACCAGTGTACATT 59.004 34.615 0.00 0.00 0.00 2.71
265 266 8.349983 GTCTGTCAAATAACCAGTGTACATTTT 58.650 33.333 0.00 0.00 0.00 1.82
266 267 8.564574 TCTGTCAAATAACCAGTGTACATTTTC 58.435 33.333 0.00 0.00 0.00 2.29
267 268 8.458573 TGTCAAATAACCAGTGTACATTTTCT 57.541 30.769 0.00 0.00 0.00 2.52
268 269 8.564574 TGTCAAATAACCAGTGTACATTTTCTC 58.435 33.333 0.00 0.00 0.00 2.87
269 270 8.564574 GTCAAATAACCAGTGTACATTTTCTCA 58.435 33.333 0.00 0.00 0.00 3.27
270 271 9.126151 TCAAATAACCAGTGTACATTTTCTCAA 57.874 29.630 0.00 0.00 0.00 3.02
271 272 9.743057 CAAATAACCAGTGTACATTTTCTCAAA 57.257 29.630 0.00 0.00 0.00 2.69
327 328 2.024414 GTCTGCAGGTTGTTCCAAACT 58.976 47.619 15.13 0.00 39.02 2.66
399 400 2.780643 CTGCGGAGAACGTGCATG 59.219 61.111 3.82 3.82 46.52 4.06
600 791 5.673337 TTAAGTCGAGGATAATTGCATGC 57.327 39.130 11.82 11.82 0.00 4.06
636 827 3.760693 CTAGCTAAGCTCGGGCAAA 57.239 52.632 11.40 0.00 40.44 3.68
646 837 2.092968 AGCTCGGGCAAAATGACATAGA 60.093 45.455 11.40 0.00 41.70 1.98
651 842 5.056480 TCGGGCAAAATGACATAGATACAG 58.944 41.667 0.00 0.00 0.00 2.74
652 843 4.319766 CGGGCAAAATGACATAGATACAGC 60.320 45.833 0.00 0.00 0.00 4.40
653 844 4.580167 GGGCAAAATGACATAGATACAGCA 59.420 41.667 0.00 0.00 0.00 4.41
654 845 5.242393 GGGCAAAATGACATAGATACAGCAT 59.758 40.000 0.00 0.00 0.00 3.79
655 846 6.147581 GGCAAAATGACATAGATACAGCATG 58.852 40.000 0.00 0.00 46.00 4.06
742 944 7.020602 TCGTTGCATAATTCTGTGTGTATTTG 58.979 34.615 0.00 0.00 0.00 2.32
746 948 9.838975 TTGCATAATTCTGTGTGTATTTGTTAG 57.161 29.630 0.00 0.00 0.00 2.34
1363 1736 1.303643 GGACTCCACCAAGGGCAAG 60.304 63.158 0.00 0.00 38.24 4.01
1420 1793 2.582436 GGATTCGGCTCCGTGGAA 59.418 61.111 8.28 0.00 40.74 3.53
1492 1865 2.743538 GTGCTCACGCTCATGGCA 60.744 61.111 6.92 0.00 41.91 4.92
1561 1934 1.227205 CAGGAGAGACGGCAGCATC 60.227 63.158 0.00 0.00 0.00 3.91
2127 2512 1.027792 AACGCCGTGGAACAAGTGTT 61.028 50.000 0.00 0.00 44.16 3.32
2141 2526 5.913137 ACAAGTGTTTGTTGAGAATTGGA 57.087 34.783 0.00 0.00 45.01 3.53
2200 2585 4.974275 TGCTCGCGTTCAGAAATATACTAC 59.026 41.667 5.77 0.00 0.00 2.73
2201 2586 5.213675 GCTCGCGTTCAGAAATATACTACT 58.786 41.667 5.77 0.00 0.00 2.57
2202 2587 5.340138 GCTCGCGTTCAGAAATATACTACTC 59.660 44.000 5.77 0.00 0.00 2.59
2203 2588 5.755813 TCGCGTTCAGAAATATACTACTCC 58.244 41.667 5.77 0.00 0.00 3.85
2204 2589 4.916249 CGCGTTCAGAAATATACTACTCCC 59.084 45.833 0.00 0.00 0.00 4.30
2205 2590 5.278364 CGCGTTCAGAAATATACTACTCCCT 60.278 44.000 0.00 0.00 0.00 4.20
2206 2591 6.151004 GCGTTCAGAAATATACTACTCCCTC 58.849 44.000 0.00 0.00 0.00 4.30
2207 2592 6.679843 CGTTCAGAAATATACTACTCCCTCC 58.320 44.000 0.00 0.00 0.00 4.30
2208 2593 6.568081 CGTTCAGAAATATACTACTCCCTCCG 60.568 46.154 0.00 0.00 0.00 4.63
2209 2594 5.950023 TCAGAAATATACTACTCCCTCCGT 58.050 41.667 0.00 0.00 0.00 4.69
2210 2595 6.002704 TCAGAAATATACTACTCCCTCCGTC 58.997 44.000 0.00 0.00 0.00 4.79
2211 2596 5.183522 CAGAAATATACTACTCCCTCCGTCC 59.816 48.000 0.00 0.00 0.00 4.79
2212 2597 3.735720 ATATACTACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
2213 2598 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
2214 2599 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
2215 2600 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2216 2601 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2217 2602 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2218 2603 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2219 2604 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2220 2605 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2221 2606 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2222 2607 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2223 2608 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2224 2609 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2225 2610 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2226 2611 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2227 2612 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2228 2613 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2229 2614 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2230 2615 6.209192 TCCGTCCCATAATATAAGAGCGTTTA 59.791 38.462 0.00 0.00 0.00 2.01
2231 2616 6.530534 CCGTCCCATAATATAAGAGCGTTTAG 59.469 42.308 0.00 0.00 0.00 1.85
2232 2617 7.088905 CGTCCCATAATATAAGAGCGTTTAGT 58.911 38.462 0.00 0.00 0.00 2.24
2233 2618 7.061905 CGTCCCATAATATAAGAGCGTTTAGTG 59.938 40.741 0.00 0.00 0.00 2.74
2234 2619 7.871463 GTCCCATAATATAAGAGCGTTTAGTGT 59.129 37.037 0.00 0.00 0.00 3.55
2235 2620 8.086522 TCCCATAATATAAGAGCGTTTAGTGTC 58.913 37.037 0.00 0.00 0.00 3.67
2236 2621 7.870954 CCCATAATATAAGAGCGTTTAGTGTCA 59.129 37.037 0.00 0.00 0.00 3.58
2237 2622 9.256477 CCATAATATAAGAGCGTTTAGTGTCAA 57.744 33.333 0.00 0.00 0.00 3.18
2241 2626 9.821662 AATATAAGAGCGTTTAGTGTCAAAAAC 57.178 29.630 3.12 3.12 33.26 2.43
2246 2631 4.191662 CGTTTAGTGTCAAAAACGCTCT 57.808 40.909 16.81 0.00 45.69 4.09
2247 2632 4.584394 CGTTTAGTGTCAAAAACGCTCTT 58.416 39.130 16.81 0.00 45.69 2.85
2248 2633 5.730269 CGTTTAGTGTCAAAAACGCTCTTA 58.270 37.500 16.81 0.00 45.69 2.10
2249 2634 6.360329 CGTTTAGTGTCAAAAACGCTCTTAT 58.640 36.000 16.81 0.00 45.69 1.73
2250 2635 7.503991 CGTTTAGTGTCAAAAACGCTCTTATA 58.496 34.615 16.81 0.00 45.69 0.98
2251 2636 8.166706 CGTTTAGTGTCAAAAACGCTCTTATAT 58.833 33.333 16.81 0.00 45.69 0.86
2252 2637 9.821662 GTTTAGTGTCAAAAACGCTCTTATATT 57.178 29.630 0.00 0.00 45.69 1.28
2256 2641 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
2257 2642 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2258 2643 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
2259 2644 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2260 2645 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2261 2646 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2262 2647 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2263 2648 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2264 2649 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2265 2650 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2266 2651 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2267 2652 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2268 2653 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2269 2654 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2280 2665 6.056884 GGACGGAGGGAGTAGTATATATGAG 58.943 48.000 0.00 0.00 0.00 2.90
2281 2666 6.126825 GGACGGAGGGAGTAGTATATATGAGA 60.127 46.154 0.00 0.00 0.00 3.27
2282 2667 6.891388 ACGGAGGGAGTAGTATATATGAGAG 58.109 44.000 0.00 0.00 0.00 3.20
2283 2668 6.673097 ACGGAGGGAGTAGTATATATGAGAGA 59.327 42.308 0.00 0.00 0.00 3.10
2284 2669 7.147620 ACGGAGGGAGTAGTATATATGAGAGAG 60.148 44.444 0.00 0.00 0.00 3.20
2285 2670 6.996282 GGAGGGAGTAGTATATATGAGAGAGC 59.004 46.154 0.00 0.00 0.00 4.09
2286 2671 6.588204 AGGGAGTAGTATATATGAGAGAGCG 58.412 44.000 0.00 0.00 0.00 5.03
2287 2672 5.761234 GGGAGTAGTATATATGAGAGAGCGG 59.239 48.000 0.00 0.00 0.00 5.52
2288 2673 6.408320 GGGAGTAGTATATATGAGAGAGCGGA 60.408 46.154 0.00 0.00 0.00 5.54
2289 2674 7.221450 GGAGTAGTATATATGAGAGAGCGGAT 58.779 42.308 0.00 0.00 0.00 4.18
2290 2675 7.172532 GGAGTAGTATATATGAGAGAGCGGATG 59.827 44.444 0.00 0.00 0.00 3.51
2291 2676 5.766150 AGTATATATGAGAGAGCGGATGC 57.234 43.478 0.00 0.00 43.24 3.91
2301 2686 3.267860 GCGGATGCTTGGCTCTCG 61.268 66.667 0.00 0.00 38.39 4.04
2302 2687 2.587194 CGGATGCTTGGCTCTCGG 60.587 66.667 0.00 0.00 0.00 4.63
2303 2688 2.203126 GGATGCTTGGCTCTCGGG 60.203 66.667 0.00 0.00 0.00 5.14
2304 2689 2.735772 GGATGCTTGGCTCTCGGGA 61.736 63.158 0.00 0.00 0.00 5.14
2305 2690 1.227497 GATGCTTGGCTCTCGGGAG 60.227 63.158 8.32 8.32 42.18 4.30
2313 2698 2.503061 CTCTCGGGAGCCATGGTG 59.497 66.667 14.67 0.00 32.43 4.17
2314 2699 3.083349 TCTCGGGAGCCATGGTGG 61.083 66.667 14.67 0.00 41.55 4.61
2315 2700 3.083349 CTCGGGAGCCATGGTGGA 61.083 66.667 14.67 3.11 40.96 4.02
2316 2701 3.391665 CTCGGGAGCCATGGTGGAC 62.392 68.421 14.67 1.39 40.96 4.02
2317 2702 3.402681 CGGGAGCCATGGTGGACT 61.403 66.667 14.67 0.69 40.96 3.85
2318 2703 2.971598 CGGGAGCCATGGTGGACTT 61.972 63.158 14.67 0.00 40.96 3.01
2319 2704 1.384191 GGGAGCCATGGTGGACTTT 59.616 57.895 14.67 0.00 40.96 2.66
2320 2705 0.251787 GGGAGCCATGGTGGACTTTT 60.252 55.000 14.67 0.00 40.96 2.27
2321 2706 1.632589 GGAGCCATGGTGGACTTTTT 58.367 50.000 14.67 0.00 40.96 1.94
2396 2781 8.940768 AAATTTGTGCAAGTAAACAAGTATGT 57.059 26.923 0.00 0.00 43.14 2.29
2410 2795 6.828502 ACAAGTATGTTATGTCTATGTGCG 57.171 37.500 0.00 0.00 35.91 5.34
2411 2796 6.338146 ACAAGTATGTTATGTCTATGTGCGT 58.662 36.000 0.00 0.00 35.91 5.24
2412 2797 7.485810 ACAAGTATGTTATGTCTATGTGCGTA 58.514 34.615 0.00 0.00 35.91 4.42
2413 2798 7.977293 ACAAGTATGTTATGTCTATGTGCGTAA 59.023 33.333 0.00 0.00 35.91 3.18
2414 2799 8.813282 CAAGTATGTTATGTCTATGTGCGTAAA 58.187 33.333 0.00 0.00 0.00 2.01
2415 2800 8.936070 AGTATGTTATGTCTATGTGCGTAAAA 57.064 30.769 0.00 0.00 0.00 1.52
2416 2801 9.542462 AGTATGTTATGTCTATGTGCGTAAAAT 57.458 29.630 0.00 0.00 0.00 1.82
2419 2804 9.716507 ATGTTATGTCTATGTGCGTAAAATTTC 57.283 29.630 0.00 0.00 0.00 2.17
2420 2805 8.722394 TGTTATGTCTATGTGCGTAAAATTTCA 58.278 29.630 0.00 0.00 0.00 2.69
2421 2806 9.210426 GTTATGTCTATGTGCGTAAAATTTCAG 57.790 33.333 0.00 0.00 0.00 3.02
2422 2807 7.609760 ATGTCTATGTGCGTAAAATTTCAGA 57.390 32.000 0.00 0.00 0.00 3.27
2423 2808 7.428282 TGTCTATGTGCGTAAAATTTCAGAA 57.572 32.000 0.00 0.00 0.00 3.02
2424 2809 7.295201 TGTCTATGTGCGTAAAATTTCAGAAC 58.705 34.615 0.00 0.00 0.00 3.01
2425 2810 6.461698 GTCTATGTGCGTAAAATTTCAGAACG 59.538 38.462 9.60 9.60 36.67 3.95
2426 2811 4.539509 TGTGCGTAAAATTTCAGAACGT 57.460 36.364 13.36 0.00 36.03 3.99
2427 2812 4.911053 TGTGCGTAAAATTTCAGAACGTT 58.089 34.783 0.00 0.00 36.03 3.99
2428 2813 4.731000 TGTGCGTAAAATTTCAGAACGTTG 59.269 37.500 5.00 0.00 36.03 4.10
2429 2814 4.965158 GTGCGTAAAATTTCAGAACGTTGA 59.035 37.500 5.00 0.00 36.03 3.18
2430 2815 5.452944 GTGCGTAAAATTTCAGAACGTTGAA 59.547 36.000 5.00 1.11 36.03 2.69
2438 2823 4.545823 TTCAGAACGTTGAAATGTGACC 57.454 40.909 5.00 0.00 34.32 4.02
2439 2824 3.804036 TCAGAACGTTGAAATGTGACCT 58.196 40.909 5.00 0.00 0.00 3.85
2440 2825 3.559655 TCAGAACGTTGAAATGTGACCTG 59.440 43.478 5.00 2.53 0.00 4.00
2441 2826 3.312421 CAGAACGTTGAAATGTGACCTGT 59.688 43.478 5.00 0.00 0.00 4.00
2467 2852 3.967332 AAAGACAAATTCATGGCCTGG 57.033 42.857 3.32 0.00 0.00 4.45
2468 2853 2.905415 AGACAAATTCATGGCCTGGA 57.095 45.000 3.32 0.00 0.00 3.86
2470 2855 3.094572 AGACAAATTCATGGCCTGGAAG 58.905 45.455 3.32 0.00 0.00 3.46
2487 2872 6.617782 CTGGAAGGATGGATAGTATCATGT 57.382 41.667 12.19 0.00 0.00 3.21
2488 2873 6.364568 TGGAAGGATGGATAGTATCATGTG 57.635 41.667 12.19 0.00 0.00 3.21
2489 2874 5.846164 TGGAAGGATGGATAGTATCATGTGT 59.154 40.000 12.19 0.00 0.00 3.72
2490 2875 6.329986 TGGAAGGATGGATAGTATCATGTGTT 59.670 38.462 12.19 0.08 0.00 3.32
2491 2876 7.512402 TGGAAGGATGGATAGTATCATGTGTTA 59.488 37.037 12.19 0.00 0.00 2.41
2492 2877 8.375506 GGAAGGATGGATAGTATCATGTGTTAA 58.624 37.037 12.19 0.00 0.00 2.01
2493 2878 9.778741 GAAGGATGGATAGTATCATGTGTTAAA 57.221 33.333 12.19 0.00 0.00 1.52
2499 2884 9.391006 TGGATAGTATCATGTGTTAAAAAGTCC 57.609 33.333 12.19 0.00 0.00 3.85
2500 2885 8.837389 GGATAGTATCATGTGTTAAAAAGTCCC 58.163 37.037 12.19 0.00 0.00 4.46
2501 2886 9.391006 GATAGTATCATGTGTTAAAAAGTCCCA 57.609 33.333 5.21 0.00 0.00 4.37
2502 2887 7.687941 AGTATCATGTGTTAAAAAGTCCCAG 57.312 36.000 0.00 0.00 0.00 4.45
2503 2888 7.458397 AGTATCATGTGTTAAAAAGTCCCAGA 58.542 34.615 0.00 0.00 0.00 3.86
2504 2889 8.109634 AGTATCATGTGTTAAAAAGTCCCAGAT 58.890 33.333 0.00 0.00 0.00 2.90
2505 2890 7.781324 ATCATGTGTTAAAAAGTCCCAGATT 57.219 32.000 0.00 0.00 0.00 2.40
2506 2891 7.595819 TCATGTGTTAAAAAGTCCCAGATTT 57.404 32.000 0.00 0.00 0.00 2.17
2507 2892 7.432869 TCATGTGTTAAAAAGTCCCAGATTTG 58.567 34.615 0.00 0.00 0.00 2.32
2508 2893 6.783708 TGTGTTAAAAAGTCCCAGATTTGT 57.216 33.333 0.00 0.00 0.00 2.83
2509 2894 6.801575 TGTGTTAAAAAGTCCCAGATTTGTC 58.198 36.000 0.00 0.00 0.00 3.18
2510 2895 6.605594 TGTGTTAAAAAGTCCCAGATTTGTCT 59.394 34.615 0.00 0.00 0.00 3.41
2511 2896 7.123547 TGTGTTAAAAAGTCCCAGATTTGTCTT 59.876 33.333 0.00 0.00 0.00 3.01
2512 2897 7.979537 GTGTTAAAAAGTCCCAGATTTGTCTTT 59.020 33.333 0.00 0.00 0.00 2.52
2513 2898 8.536175 TGTTAAAAAGTCCCAGATTTGTCTTTT 58.464 29.630 0.00 0.00 36.92 2.27
2514 2899 9.378551 GTTAAAAAGTCCCAGATTTGTCTTTTT 57.621 29.630 18.14 18.14 43.03 1.94
2515 2900 7.848223 AAAAAGTCCCAGATTTGTCTTTTTG 57.152 32.000 15.69 0.00 40.82 2.44
2516 2901 4.590850 AGTCCCAGATTTGTCTTTTTGC 57.409 40.909 0.00 0.00 0.00 3.68
2517 2902 3.960102 AGTCCCAGATTTGTCTTTTTGCA 59.040 39.130 0.00 0.00 0.00 4.08
2518 2903 4.051237 GTCCCAGATTTGTCTTTTTGCAC 58.949 43.478 0.00 0.00 0.00 4.57
2519 2904 3.703556 TCCCAGATTTGTCTTTTTGCACA 59.296 39.130 0.00 0.00 0.00 4.57
2520 2905 4.161189 TCCCAGATTTGTCTTTTTGCACAA 59.839 37.500 0.00 0.00 0.00 3.33
2521 2906 4.270808 CCCAGATTTGTCTTTTTGCACAAC 59.729 41.667 0.00 0.00 32.19 3.32
2522 2907 4.270808 CCAGATTTGTCTTTTTGCACAACC 59.729 41.667 0.00 0.00 32.19 3.77
2523 2908 4.270808 CAGATTTGTCTTTTTGCACAACCC 59.729 41.667 0.00 0.00 32.19 4.11
2524 2909 3.971245 TTTGTCTTTTTGCACAACCCT 57.029 38.095 0.00 0.00 32.19 4.34
2525 2910 3.971245 TTGTCTTTTTGCACAACCCTT 57.029 38.095 0.00 0.00 0.00 3.95
2526 2911 5.407407 TTTGTCTTTTTGCACAACCCTTA 57.593 34.783 0.00 0.00 32.19 2.69
2527 2912 5.606348 TTGTCTTTTTGCACAACCCTTAT 57.394 34.783 0.00 0.00 0.00 1.73
2528 2913 5.606348 TGTCTTTTTGCACAACCCTTATT 57.394 34.783 0.00 0.00 0.00 1.40
2529 2914 5.983540 TGTCTTTTTGCACAACCCTTATTT 58.016 33.333 0.00 0.00 0.00 1.40
2530 2915 6.045955 TGTCTTTTTGCACAACCCTTATTTC 58.954 36.000 0.00 0.00 0.00 2.17
2531 2916 6.045955 GTCTTTTTGCACAACCCTTATTTCA 58.954 36.000 0.00 0.00 0.00 2.69
2532 2917 6.536941 GTCTTTTTGCACAACCCTTATTTCAA 59.463 34.615 0.00 0.00 0.00 2.69
2533 2918 6.536941 TCTTTTTGCACAACCCTTATTTCAAC 59.463 34.615 0.00 0.00 0.00 3.18
2534 2919 5.606348 TTTGCACAACCCTTATTTCAACT 57.394 34.783 0.00 0.00 0.00 3.16
2535 2920 5.606348 TTGCACAACCCTTATTTCAACTT 57.394 34.783 0.00 0.00 0.00 2.66
2536 2921 6.716934 TTGCACAACCCTTATTTCAACTTA 57.283 33.333 0.00 0.00 0.00 2.24
2537 2922 6.909550 TGCACAACCCTTATTTCAACTTAT 57.090 33.333 0.00 0.00 0.00 1.73
2538 2923 7.296628 TGCACAACCCTTATTTCAACTTATT 57.703 32.000 0.00 0.00 0.00 1.40
2539 2924 7.731054 TGCACAACCCTTATTTCAACTTATTT 58.269 30.769 0.00 0.00 0.00 1.40
2540 2925 8.207545 TGCACAACCCTTATTTCAACTTATTTT 58.792 29.630 0.00 0.00 0.00 1.82
2541 2926 8.495148 GCACAACCCTTATTTCAACTTATTTTG 58.505 33.333 0.00 0.00 0.00 2.44
2542 2927 8.495148 CACAACCCTTATTTCAACTTATTTTGC 58.505 33.333 0.00 0.00 0.00 3.68
2543 2928 7.659799 ACAACCCTTATTTCAACTTATTTTGCC 59.340 33.333 0.00 0.00 0.00 4.52
2544 2929 6.707290 ACCCTTATTTCAACTTATTTTGCCC 58.293 36.000 0.00 0.00 0.00 5.36
2545 2930 6.500400 ACCCTTATTTCAACTTATTTTGCCCT 59.500 34.615 0.00 0.00 0.00 5.19
2546 2931 6.818142 CCCTTATTTCAACTTATTTTGCCCTG 59.182 38.462 0.00 0.00 0.00 4.45
2547 2932 7.310361 CCCTTATTTCAACTTATTTTGCCCTGA 60.310 37.037 0.00 0.00 0.00 3.86
2548 2933 8.093927 CCTTATTTCAACTTATTTTGCCCTGAA 58.906 33.333 0.00 0.00 0.00 3.02
2549 2934 9.487790 CTTATTTCAACTTATTTTGCCCTGAAA 57.512 29.630 0.00 0.00 36.19 2.69
2550 2935 9.838339 TTATTTCAACTTATTTTGCCCTGAAAA 57.162 25.926 0.00 0.00 35.59 2.29
2551 2936 8.922931 ATTTCAACTTATTTTGCCCTGAAAAT 57.077 26.923 0.00 0.00 38.69 1.82
2552 2937 8.744568 TTTCAACTTATTTTGCCCTGAAAATT 57.255 26.923 0.00 0.00 36.94 1.82
2553 2938 8.744568 TTCAACTTATTTTGCCCTGAAAATTT 57.255 26.923 0.00 0.00 36.94 1.82
2554 2939 8.376889 TCAACTTATTTTGCCCTGAAAATTTC 57.623 30.769 0.00 0.00 36.94 2.17
2555 2940 7.443879 TCAACTTATTTTGCCCTGAAAATTTCC 59.556 33.333 3.00 0.00 36.94 3.13
2556 2941 6.836242 ACTTATTTTGCCCTGAAAATTTCCA 58.164 32.000 3.00 0.00 36.94 3.53
2557 2942 6.710295 ACTTATTTTGCCCTGAAAATTTCCAC 59.290 34.615 3.00 0.00 36.94 4.02
2558 2943 4.494091 TTTTGCCCTGAAAATTTCCACA 57.506 36.364 3.00 0.00 0.00 4.17
2559 2944 4.703379 TTTGCCCTGAAAATTTCCACAT 57.297 36.364 3.00 0.00 0.00 3.21
2560 2945 3.681593 TGCCCTGAAAATTTCCACATG 57.318 42.857 3.00 0.00 0.00 3.21
2561 2946 2.971330 TGCCCTGAAAATTTCCACATGT 59.029 40.909 3.00 0.00 0.00 3.21
2562 2947 3.244146 TGCCCTGAAAATTTCCACATGTG 60.244 43.478 19.31 19.31 0.00 3.21
2563 2948 3.244181 GCCCTGAAAATTTCCACATGTGT 60.244 43.478 23.79 3.74 0.00 3.72
2564 2949 4.309099 CCCTGAAAATTTCCACATGTGTG 58.691 43.478 23.79 15.21 45.23 3.82
2565 2950 4.202243 CCCTGAAAATTTCCACATGTGTGT 60.202 41.667 23.79 0.08 44.21 3.72
2566 2951 5.358922 CCTGAAAATTTCCACATGTGTGTT 58.641 37.500 23.79 7.18 44.21 3.32
2567 2952 6.462207 CCCTGAAAATTTCCACATGTGTGTTA 60.462 38.462 23.79 7.29 44.21 2.41
2568 2953 7.153985 CCTGAAAATTTCCACATGTGTGTTAT 58.846 34.615 23.79 9.19 44.21 1.89
2569 2954 7.116662 CCTGAAAATTTCCACATGTGTGTTATG 59.883 37.037 23.79 8.05 44.21 1.90
2570 2955 6.423302 TGAAAATTTCCACATGTGTGTTATGC 59.577 34.615 23.79 7.98 44.21 3.14
2571 2956 3.932545 TTTCCACATGTGTGTTATGCC 57.067 42.857 23.79 0.00 44.21 4.40
2572 2957 2.877097 TCCACATGTGTGTTATGCCT 57.123 45.000 23.79 0.00 44.21 4.75
2573 2958 3.153369 TCCACATGTGTGTTATGCCTT 57.847 42.857 23.79 0.00 44.21 4.35
2574 2959 3.081061 TCCACATGTGTGTTATGCCTTC 58.919 45.455 23.79 0.00 44.21 3.46
2575 2960 2.819019 CCACATGTGTGTTATGCCTTCA 59.181 45.455 23.79 0.00 44.21 3.02
2576 2961 3.444742 CCACATGTGTGTTATGCCTTCAT 59.555 43.478 23.79 0.00 44.21 2.57
2577 2962 4.417506 CACATGTGTGTTATGCCTTCATG 58.582 43.478 18.03 0.00 40.96 3.07
2578 2963 4.081406 ACATGTGTGTTATGCCTTCATGT 58.919 39.130 0.00 0.00 39.25 3.21
2579 2964 5.123661 CACATGTGTGTTATGCCTTCATGTA 59.876 40.000 18.03 0.00 41.14 2.29
2580 2965 5.887598 ACATGTGTGTTATGCCTTCATGTAT 59.112 36.000 0.00 0.00 41.23 2.29
2581 2966 7.012232 CACATGTGTGTTATGCCTTCATGTATA 59.988 37.037 18.03 0.00 41.14 1.47
2582 2967 7.720957 ACATGTGTGTTATGCCTTCATGTATAT 59.279 33.333 0.00 0.00 41.23 0.86
2583 2968 7.495135 TGTGTGTTATGCCTTCATGTATATG 57.505 36.000 0.00 0.00 34.22 1.78
2584 2969 7.053498 TGTGTGTTATGCCTTCATGTATATGT 58.947 34.615 0.00 0.00 35.73 2.29
2585 2970 7.555914 TGTGTGTTATGCCTTCATGTATATGTT 59.444 33.333 0.00 0.00 35.73 2.71
2586 2971 8.405531 GTGTGTTATGCCTTCATGTATATGTTT 58.594 33.333 0.00 0.00 35.73 2.83
2587 2972 8.404765 TGTGTTATGCCTTCATGTATATGTTTG 58.595 33.333 0.00 0.00 35.73 2.93
2588 2973 8.405531 GTGTTATGCCTTCATGTATATGTTTGT 58.594 33.333 0.00 0.00 35.73 2.83
2589 2974 8.965819 TGTTATGCCTTCATGTATATGTTTGTT 58.034 29.630 0.00 0.00 35.73 2.83
2590 2975 9.801873 GTTATGCCTTCATGTATATGTTTGTTT 57.198 29.630 0.00 0.00 35.73 2.83
2652 3037 9.548208 TCGACAAAATTCAAAATTTTCAAAACC 57.452 25.926 0.00 0.00 0.00 3.27
2653 3038 8.511505 CGACAAAATTCAAAATTTTCAAAACCG 58.488 29.630 0.00 0.00 0.00 4.44
2654 3039 9.548208 GACAAAATTCAAAATTTTCAAAACCGA 57.452 25.926 0.00 0.00 0.00 4.69
2655 3040 9.553418 ACAAAATTCAAAATTTTCAAAACCGAG 57.447 25.926 0.00 0.00 0.00 4.63
2656 3041 8.522661 CAAAATTCAAAATTTTCAAAACCGAGC 58.477 29.630 0.00 0.00 0.00 5.03
2657 3042 7.552458 AATTCAAAATTTTCAAAACCGAGCT 57.448 28.000 0.00 0.00 0.00 4.09
2658 3043 6.976636 TTCAAAATTTTCAAAACCGAGCTT 57.023 29.167 0.00 0.00 0.00 3.74
2659 3044 6.582437 TCAAAATTTTCAAAACCGAGCTTC 57.418 33.333 0.00 0.00 0.00 3.86
2660 3045 6.102663 TCAAAATTTTCAAAACCGAGCTTCA 58.897 32.000 0.00 0.00 0.00 3.02
2661 3046 6.760770 TCAAAATTTTCAAAACCGAGCTTCAT 59.239 30.769 0.00 0.00 0.00 2.57
2662 3047 6.529463 AAATTTTCAAAACCGAGCTTCATG 57.471 33.333 0.00 0.00 0.00 3.07
2663 3048 3.641437 TTTCAAAACCGAGCTTCATGG 57.359 42.857 0.00 0.00 0.00 3.66
2664 3049 2.559698 TCAAAACCGAGCTTCATGGA 57.440 45.000 0.00 0.00 0.00 3.41
2665 3050 2.426522 TCAAAACCGAGCTTCATGGAG 58.573 47.619 0.00 0.00 0.00 3.86
2666 3051 1.135575 CAAAACCGAGCTTCATGGAGC 60.136 52.381 19.03 19.03 43.02 4.70
2672 3057 2.899339 GCTTCATGGAGCTCGGCC 60.899 66.667 19.38 0.00 39.57 6.13
2673 3058 2.906458 CTTCATGGAGCTCGGCCT 59.094 61.111 7.83 0.00 0.00 5.19
2674 3059 1.227497 CTTCATGGAGCTCGGCCTC 60.227 63.158 7.83 0.00 0.00 4.70
2680 3065 2.982130 GAGCTCGGCCTCCAAAGA 59.018 61.111 0.00 0.00 0.00 2.52
2681 3066 1.448717 GAGCTCGGCCTCCAAAGAC 60.449 63.158 0.00 0.00 0.00 3.01
2682 3067 2.172483 GAGCTCGGCCTCCAAAGACA 62.172 60.000 0.00 0.00 0.00 3.41
2683 3068 1.302511 GCTCGGCCTCCAAAGACAA 60.303 57.895 0.00 0.00 0.00 3.18
2684 3069 0.678048 GCTCGGCCTCCAAAGACAAT 60.678 55.000 0.00 0.00 0.00 2.71
2685 3070 1.406887 GCTCGGCCTCCAAAGACAATA 60.407 52.381 0.00 0.00 0.00 1.90
2686 3071 2.746472 GCTCGGCCTCCAAAGACAATAT 60.746 50.000 0.00 0.00 0.00 1.28
2687 3072 3.134458 CTCGGCCTCCAAAGACAATATC 58.866 50.000 0.00 0.00 0.00 1.63
2688 3073 2.158813 TCGGCCTCCAAAGACAATATCC 60.159 50.000 0.00 0.00 0.00 2.59
2689 3074 2.421388 CGGCCTCCAAAGACAATATCCA 60.421 50.000 0.00 0.00 0.00 3.41
2690 3075 3.748668 CGGCCTCCAAAGACAATATCCAT 60.749 47.826 0.00 0.00 0.00 3.41
2691 3076 4.504864 CGGCCTCCAAAGACAATATCCATA 60.505 45.833 0.00 0.00 0.00 2.74
2692 3077 5.574188 GGCCTCCAAAGACAATATCCATAT 58.426 41.667 0.00 0.00 0.00 1.78
2693 3078 6.576244 CGGCCTCCAAAGACAATATCCATATA 60.576 42.308 0.00 0.00 0.00 0.86
2694 3079 7.349598 GGCCTCCAAAGACAATATCCATATAT 58.650 38.462 0.00 0.00 0.00 0.86
2695 3080 7.284034 GGCCTCCAAAGACAATATCCATATATG 59.716 40.741 5.68 5.68 0.00 1.78
2696 3081 8.049117 GCCTCCAAAGACAATATCCATATATGA 58.951 37.037 14.54 1.10 0.00 2.15
2988 3396 3.207265 TCTTGTTTAGCTCCTTGTGCA 57.793 42.857 0.00 0.00 0.00 4.57
3009 3460 4.909880 GCAAATCCGTCAAAAGTGAACTAC 59.090 41.667 0.00 0.00 34.87 2.73
3015 3466 3.460103 GTCAAAAGTGAACTACGGGACA 58.540 45.455 0.00 0.00 34.87 4.02
3022 3477 1.695242 TGAACTACGGGACAACCATGT 59.305 47.619 0.00 0.00 44.25 3.21
3052 3507 4.442706 ACTATTGGTAAGCACGATCCAAG 58.557 43.478 0.00 0.00 42.09 3.61
3053 3508 2.107950 TTGGTAAGCACGATCCAAGG 57.892 50.000 0.00 0.00 35.42 3.61
3057 3512 2.429610 GGTAAGCACGATCCAAGGTCTA 59.570 50.000 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.963515 CCATATTTTGGGCTAGGGTGC 59.036 52.381 0.00 0.00 42.33 5.01
98 99 1.152839 GGAGGAGACGAGAGGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
99 100 0.465460 CTGGAGGAGACGAGAGGGAG 60.465 65.000 0.00 0.00 0.00 4.30
100 101 0.914902 TCTGGAGGAGACGAGAGGGA 60.915 60.000 0.00 0.00 0.00 4.20
101 102 0.750182 GTCTGGAGGAGACGAGAGGG 60.750 65.000 0.00 0.00 41.91 4.30
126 127 0.108138 GAGAATATCCATCGGCGGGG 60.108 60.000 7.21 9.82 0.00 5.73
129 130 2.733552 CAGTTGAGAATATCCATCGGCG 59.266 50.000 0.00 0.00 0.00 6.46
142 143 6.522625 TGAAACCACAAATTTCAGTTGAGA 57.477 33.333 0.00 0.00 40.32 3.27
237 238 6.350103 TGTACACTGGTTATTTGACAGACAA 58.650 36.000 0.00 0.00 36.17 3.18
281 282 8.946085 CCGATATATATGTGCACTGGTTATTTT 58.054 33.333 19.41 4.80 0.00 1.82
282 283 8.100791 ACCGATATATATGTGCACTGGTTATTT 58.899 33.333 19.41 7.82 0.00 1.40
283 284 7.620880 ACCGATATATATGTGCACTGGTTATT 58.379 34.615 19.41 0.00 0.00 1.40
284 285 7.124298 AGACCGATATATATGTGCACTGGTTAT 59.876 37.037 19.41 11.83 0.00 1.89
285 286 6.436218 AGACCGATATATATGTGCACTGGTTA 59.564 38.462 19.41 5.21 0.00 2.85
286 287 5.246203 AGACCGATATATATGTGCACTGGTT 59.754 40.000 19.41 2.99 0.00 3.67
287 288 4.772624 AGACCGATATATATGTGCACTGGT 59.227 41.667 19.41 10.95 0.00 4.00
288 289 5.105063 CAGACCGATATATATGTGCACTGG 58.895 45.833 19.41 8.02 0.00 4.00
289 290 4.564372 GCAGACCGATATATATGTGCACTG 59.436 45.833 19.41 3.48 0.00 3.66
290 291 4.220602 TGCAGACCGATATATATGTGCACT 59.779 41.667 19.41 6.22 34.87 4.40
291 292 4.494484 TGCAGACCGATATATATGTGCAC 58.506 43.478 10.75 10.75 34.87 4.57
292 293 4.381932 CCTGCAGACCGATATATATGTGCA 60.382 45.833 17.39 12.55 37.34 4.57
293 294 4.115516 CCTGCAGACCGATATATATGTGC 58.884 47.826 17.39 0.00 0.00 4.57
294 295 5.330455 ACCTGCAGACCGATATATATGTG 57.670 43.478 17.39 0.00 0.00 3.21
295 296 5.246203 ACAACCTGCAGACCGATATATATGT 59.754 40.000 17.39 0.00 0.00 2.29
296 297 5.724328 ACAACCTGCAGACCGATATATATG 58.276 41.667 17.39 0.00 0.00 1.78
297 298 6.360370 AACAACCTGCAGACCGATATATAT 57.640 37.500 17.39 0.00 0.00 0.86
298 299 5.279306 GGAACAACCTGCAGACCGATATATA 60.279 44.000 17.39 0.00 35.41 0.86
299 300 4.503296 GGAACAACCTGCAGACCGATATAT 60.503 45.833 17.39 0.00 35.41 0.86
300 301 3.181469 GGAACAACCTGCAGACCGATATA 60.181 47.826 17.39 0.00 35.41 0.86
327 328 4.695993 TGCGCGCCAACATGGAGA 62.696 61.111 30.77 1.61 39.92 3.71
399 400 3.042887 ACGTACGTGAAGGTTACGAAAC 58.957 45.455 22.14 1.98 43.82 2.78
597 788 4.473520 CAGCGGACGGGAAGGCAT 62.474 66.667 0.00 0.00 0.00 4.40
599 790 4.388499 TTCAGCGGACGGGAAGGC 62.388 66.667 0.00 0.00 0.00 4.35
600 791 2.125512 CTTCAGCGGACGGGAAGG 60.126 66.667 0.00 0.00 35.53 3.46
646 837 5.653330 TCCATCACAAAATGACATGCTGTAT 59.347 36.000 0.00 0.00 41.24 2.29
651 842 3.173599 CGTCCATCACAAAATGACATGC 58.826 45.455 0.00 0.00 41.24 4.06
652 843 3.173599 GCGTCCATCACAAAATGACATG 58.826 45.455 0.00 0.00 41.24 3.21
653 844 2.159531 CGCGTCCATCACAAAATGACAT 60.160 45.455 0.00 0.00 41.24 3.06
654 845 1.196581 CGCGTCCATCACAAAATGACA 59.803 47.619 0.00 0.00 41.24 3.58
655 846 1.465689 CCGCGTCCATCACAAAATGAC 60.466 52.381 4.92 0.00 41.24 3.06
658 849 0.802494 GACCGCGTCCATCACAAAAT 59.198 50.000 4.92 0.00 0.00 1.82
660 851 1.069935 TGACCGCGTCCATCACAAA 59.930 52.632 4.92 0.00 0.00 2.83
661 852 1.666553 GTGACCGCGTCCATCACAA 60.667 57.895 19.11 0.00 41.94 3.33
742 944 2.159142 ACCAGCTATGTACGTGGCTAAC 60.159 50.000 23.64 0.00 33.86 2.34
746 948 0.810031 CCACCAGCTATGTACGTGGC 60.810 60.000 15.10 15.10 37.75 5.01
1113 1461 1.073444 ACCATCTCCTCGCGGACTATA 59.927 52.381 6.13 0.00 34.92 1.31
1363 1736 4.828925 GCGTCCCTCTCTGCCAGC 62.829 72.222 0.00 0.00 0.00 4.85
1420 1793 3.553095 GAGCTTGGCCTTCACCCGT 62.553 63.158 3.32 0.00 0.00 5.28
2058 2443 4.024809 GGACGTAGCATTTCTTCCTTATGC 60.025 45.833 0.00 0.00 43.78 3.14
2110 2495 0.591236 CAAACACTTGTTCCACGGCG 60.591 55.000 4.80 4.80 37.25 6.46
2127 2512 5.010922 CCATCTGGTTTCCAATTCTCAACAA 59.989 40.000 0.00 0.00 30.80 2.83
2200 2585 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2201 2586 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2202 2587 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2203 2588 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2204 2589 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2205 2590 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2206 2591 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2207 2592 7.061905 CACTAAACGCTCTTATATTATGGGACG 59.938 40.741 0.00 0.00 0.00 4.79
2208 2593 7.871463 ACACTAAACGCTCTTATATTATGGGAC 59.129 37.037 0.00 0.00 0.00 4.46
2209 2594 7.959175 ACACTAAACGCTCTTATATTATGGGA 58.041 34.615 0.00 0.00 0.00 4.37
2210 2595 7.870954 TGACACTAAACGCTCTTATATTATGGG 59.129 37.037 0.00 0.00 0.00 4.00
2211 2596 8.812147 TGACACTAAACGCTCTTATATTATGG 57.188 34.615 0.00 0.00 0.00 2.74
2215 2600 9.821662 GTTTTTGACACTAAACGCTCTTATATT 57.178 29.630 0.00 0.00 0.00 1.28
2216 2601 8.166706 CGTTTTTGACACTAAACGCTCTTATAT 58.833 33.333 16.95 0.00 46.45 0.86
2217 2602 7.503991 CGTTTTTGACACTAAACGCTCTTATA 58.496 34.615 16.95 0.00 46.45 0.98
2218 2603 6.360329 CGTTTTTGACACTAAACGCTCTTAT 58.640 36.000 16.95 0.00 46.45 1.73
2219 2604 5.730269 CGTTTTTGACACTAAACGCTCTTA 58.270 37.500 16.95 0.00 46.45 2.10
2220 2605 4.584394 CGTTTTTGACACTAAACGCTCTT 58.416 39.130 16.95 0.00 46.45 2.85
2221 2606 4.191662 CGTTTTTGACACTAAACGCTCT 57.808 40.909 16.95 0.00 46.45 4.09
2226 2611 9.821662 AATATAAGAGCGTTTTTGACACTAAAC 57.178 29.630 3.38 3.38 0.00 2.01
2230 2615 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
2231 2616 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2232 2617 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2233 2618 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2234 2619 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
2235 2620 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2236 2621 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2237 2622 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2238 2623 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2239 2624 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2240 2625 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2241 2626 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2242 2627 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2243 2628 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2244 2629 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2245 2630 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2246 2631 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2247 2632 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2248 2633 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2249 2634 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2250 2635 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2251 2636 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2252 2637 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2253 2638 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
2254 2639 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
2255 2640 3.735720 ATATACTACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
2256 2641 5.999044 TCATATATACTACTCCCTCCGTCC 58.001 45.833 0.00 0.00 0.00 4.79
2257 2642 6.887013 TCTCATATATACTACTCCCTCCGTC 58.113 44.000 0.00 0.00 0.00 4.79
2258 2643 6.673097 TCTCTCATATATACTACTCCCTCCGT 59.327 42.308 0.00 0.00 0.00 4.69
2259 2644 7.127012 TCTCTCATATATACTACTCCCTCCG 57.873 44.000 0.00 0.00 0.00 4.63
2260 2645 6.996282 GCTCTCTCATATATACTACTCCCTCC 59.004 46.154 0.00 0.00 0.00 4.30
2261 2646 6.704493 CGCTCTCTCATATATACTACTCCCTC 59.296 46.154 0.00 0.00 0.00 4.30
2262 2647 6.408776 CCGCTCTCTCATATATACTACTCCCT 60.409 46.154 0.00 0.00 0.00 4.20
2263 2648 5.761234 CCGCTCTCTCATATATACTACTCCC 59.239 48.000 0.00 0.00 0.00 4.30
2264 2649 6.584488 TCCGCTCTCTCATATATACTACTCC 58.416 44.000 0.00 0.00 0.00 3.85
2265 2650 7.307751 GCATCCGCTCTCTCATATATACTACTC 60.308 44.444 0.00 0.00 34.30 2.59
2266 2651 6.485313 GCATCCGCTCTCTCATATATACTACT 59.515 42.308 0.00 0.00 34.30 2.57
2267 2652 6.664515 GCATCCGCTCTCTCATATATACTAC 58.335 44.000 0.00 0.00 34.30 2.73
2268 2653 6.869315 GCATCCGCTCTCTCATATATACTA 57.131 41.667 0.00 0.00 34.30 1.82
2269 2654 5.766150 GCATCCGCTCTCTCATATATACT 57.234 43.478 0.00 0.00 34.30 2.12
2284 2669 3.267860 CGAGAGCCAAGCATCCGC 61.268 66.667 0.00 0.00 38.99 5.54
2285 2670 2.587194 CCGAGAGCCAAGCATCCG 60.587 66.667 0.00 0.00 0.00 4.18
2286 2671 2.203126 CCCGAGAGCCAAGCATCC 60.203 66.667 0.00 0.00 0.00 3.51
2287 2672 1.227497 CTCCCGAGAGCCAAGCATC 60.227 63.158 0.00 0.00 32.13 3.91
2288 2673 2.906458 CTCCCGAGAGCCAAGCAT 59.094 61.111 0.00 0.00 32.13 3.79
2296 2681 2.503061 CACCATGGCTCCCGAGAG 59.497 66.667 13.04 0.00 43.57 3.20
2297 2682 3.083349 CCACCATGGCTCCCGAGA 61.083 66.667 13.04 0.00 0.00 4.04
2298 2683 3.083349 TCCACCATGGCTCCCGAG 61.083 66.667 13.04 0.00 37.47 4.63
2299 2684 3.399181 GTCCACCATGGCTCCCGA 61.399 66.667 13.04 0.00 37.47 5.14
2300 2685 2.484287 AAAGTCCACCATGGCTCCCG 62.484 60.000 13.04 0.00 37.47 5.14
2301 2686 0.251787 AAAAGTCCACCATGGCTCCC 60.252 55.000 13.04 0.00 37.47 4.30
2302 2687 1.632589 AAAAAGTCCACCATGGCTCC 58.367 50.000 13.04 0.00 37.47 4.70
2370 2755 9.377312 ACATACTTGTTTACTTGCACAAATTTT 57.623 25.926 0.00 0.00 32.53 1.82
2371 2756 8.940768 ACATACTTGTTTACTTGCACAAATTT 57.059 26.923 0.00 0.00 32.53 1.82
2372 2757 8.940768 AACATACTTGTTTACTTGCACAAATT 57.059 26.923 0.00 0.00 43.57 1.82
2374 2759 9.457110 CATAACATACTTGTTTACTTGCACAAA 57.543 29.630 0.00 0.00 43.57 2.83
2375 2760 8.625651 ACATAACATACTTGTTTACTTGCACAA 58.374 29.630 0.00 0.00 43.57 3.33
2376 2761 8.160521 ACATAACATACTTGTTTACTTGCACA 57.839 30.769 0.00 0.00 43.57 4.57
2377 2762 8.504005 AGACATAACATACTTGTTTACTTGCAC 58.496 33.333 0.00 0.00 43.57 4.57
2378 2763 8.615878 AGACATAACATACTTGTTTACTTGCA 57.384 30.769 0.00 0.00 43.57 4.08
2383 2768 9.916397 GCACATAGACATAACATACTTGTTTAC 57.084 33.333 0.00 0.00 43.57 2.01
2384 2769 8.813282 CGCACATAGACATAACATACTTGTTTA 58.187 33.333 0.00 0.00 43.57 2.01
2385 2770 7.333423 ACGCACATAGACATAACATACTTGTTT 59.667 33.333 0.00 0.00 43.57 2.83
2387 2772 6.338146 ACGCACATAGACATAACATACTTGT 58.662 36.000 0.00 0.00 37.82 3.16
2388 2773 6.828502 ACGCACATAGACATAACATACTTG 57.171 37.500 0.00 0.00 0.00 3.16
2389 2774 8.936070 TTTACGCACATAGACATAACATACTT 57.064 30.769 0.00 0.00 0.00 2.24
2390 2775 8.936070 TTTTACGCACATAGACATAACATACT 57.064 30.769 0.00 0.00 0.00 2.12
2393 2778 9.716507 GAAATTTTACGCACATAGACATAACAT 57.283 29.630 0.00 0.00 0.00 2.71
2394 2779 8.722394 TGAAATTTTACGCACATAGACATAACA 58.278 29.630 0.00 0.00 0.00 2.41
2395 2780 9.210426 CTGAAATTTTACGCACATAGACATAAC 57.790 33.333 0.00 0.00 0.00 1.89
2396 2781 9.157104 TCTGAAATTTTACGCACATAGACATAA 57.843 29.630 0.00 0.00 0.00 1.90
2397 2782 8.710835 TCTGAAATTTTACGCACATAGACATA 57.289 30.769 0.00 0.00 0.00 2.29
2398 2783 7.609760 TCTGAAATTTTACGCACATAGACAT 57.390 32.000 0.00 0.00 0.00 3.06
2399 2784 7.295201 GTTCTGAAATTTTACGCACATAGACA 58.705 34.615 0.00 0.00 0.00 3.41
2400 2785 6.461698 CGTTCTGAAATTTTACGCACATAGAC 59.538 38.462 0.00 0.00 0.00 2.59
2401 2786 6.146510 ACGTTCTGAAATTTTACGCACATAGA 59.853 34.615 12.75 0.00 35.77 1.98
2402 2787 6.304126 ACGTTCTGAAATTTTACGCACATAG 58.696 36.000 12.75 0.00 35.77 2.23
2403 2788 6.230849 ACGTTCTGAAATTTTACGCACATA 57.769 33.333 12.75 0.00 35.77 2.29
2404 2789 5.103290 ACGTTCTGAAATTTTACGCACAT 57.897 34.783 12.75 0.00 35.77 3.21
2405 2790 4.539509 ACGTTCTGAAATTTTACGCACA 57.460 36.364 12.75 0.00 35.77 4.57
2406 2791 4.965158 TCAACGTTCTGAAATTTTACGCAC 59.035 37.500 0.00 0.00 35.77 5.34
2407 2792 5.158101 TCAACGTTCTGAAATTTTACGCA 57.842 34.783 0.00 0.00 35.77 5.24
2408 2793 6.485253 TTTCAACGTTCTGAAATTTTACGC 57.515 33.333 10.60 0.00 39.74 4.42
2416 2801 4.638421 AGGTCACATTTCAACGTTCTGAAA 59.362 37.500 15.66 15.66 46.45 2.69
2417 2802 4.035091 CAGGTCACATTTCAACGTTCTGAA 59.965 41.667 0.00 0.00 33.48 3.02
2418 2803 3.559655 CAGGTCACATTTCAACGTTCTGA 59.440 43.478 0.00 0.00 0.00 3.27
2419 2804 3.312421 ACAGGTCACATTTCAACGTTCTG 59.688 43.478 0.00 1.05 0.00 3.02
2420 2805 3.541632 ACAGGTCACATTTCAACGTTCT 58.458 40.909 0.00 0.00 0.00 3.01
2421 2806 3.963383 ACAGGTCACATTTCAACGTTC 57.037 42.857 0.00 0.00 0.00 3.95
2422 2807 4.193090 TGTACAGGTCACATTTCAACGTT 58.807 39.130 0.00 0.00 0.00 3.99
2423 2808 3.799366 TGTACAGGTCACATTTCAACGT 58.201 40.909 0.00 0.00 0.00 3.99
2424 2809 4.804608 TTGTACAGGTCACATTTCAACG 57.195 40.909 0.00 0.00 0.00 4.10
2450 2835 2.167075 CCTTCCAGGCCATGAATTTGTC 59.833 50.000 5.01 0.00 0.00 3.18
2452 2837 2.459644 TCCTTCCAGGCCATGAATTTG 58.540 47.619 5.01 0.00 34.61 2.32
2457 2842 0.624206 TCCATCCTTCCAGGCCATGA 60.624 55.000 5.01 0.00 34.61 3.07
2458 2843 0.481567 ATCCATCCTTCCAGGCCATG 59.518 55.000 5.01 0.00 34.61 3.66
2460 2845 1.345422 ACTATCCATCCTTCCAGGCCA 60.345 52.381 5.01 0.00 34.61 5.36
2461 2846 1.439543 ACTATCCATCCTTCCAGGCC 58.560 55.000 0.00 0.00 34.61 5.19
2463 2848 5.486775 ACATGATACTATCCATCCTTCCAGG 59.513 44.000 0.00 0.00 36.46 4.45
2464 2849 6.013898 ACACATGATACTATCCATCCTTCCAG 60.014 42.308 0.00 0.00 0.00 3.86
2465 2850 5.846164 ACACATGATACTATCCATCCTTCCA 59.154 40.000 0.00 0.00 0.00 3.53
2466 2851 6.365970 ACACATGATACTATCCATCCTTCC 57.634 41.667 0.00 0.00 0.00 3.46
2467 2852 9.778741 TTTAACACATGATACTATCCATCCTTC 57.221 33.333 0.00 0.00 0.00 3.46
2473 2858 9.391006 GGACTTTTTAACACATGATACTATCCA 57.609 33.333 0.00 0.00 0.00 3.41
2474 2859 8.837389 GGGACTTTTTAACACATGATACTATCC 58.163 37.037 0.00 0.00 0.00 2.59
2475 2860 9.391006 TGGGACTTTTTAACACATGATACTATC 57.609 33.333 0.00 0.00 0.00 2.08
2476 2861 9.396022 CTGGGACTTTTTAACACATGATACTAT 57.604 33.333 0.00 0.00 0.00 2.12
2477 2862 8.598916 TCTGGGACTTTTTAACACATGATACTA 58.401 33.333 0.00 0.00 0.00 1.82
2478 2863 7.458397 TCTGGGACTTTTTAACACATGATACT 58.542 34.615 0.00 0.00 0.00 2.12
2479 2864 7.681939 TCTGGGACTTTTTAACACATGATAC 57.318 36.000 0.00 0.00 0.00 2.24
2480 2865 8.877864 AATCTGGGACTTTTTAACACATGATA 57.122 30.769 0.00 0.00 0.00 2.15
2481 2866 7.781324 AATCTGGGACTTTTTAACACATGAT 57.219 32.000 0.00 0.00 0.00 2.45
2482 2867 7.069331 ACAAATCTGGGACTTTTTAACACATGA 59.931 33.333 0.00 0.00 0.00 3.07
2483 2868 7.209475 ACAAATCTGGGACTTTTTAACACATG 58.791 34.615 0.00 0.00 0.00 3.21
2484 2869 7.287696 AGACAAATCTGGGACTTTTTAACACAT 59.712 33.333 0.00 0.00 32.29 3.21
2485 2870 6.605594 AGACAAATCTGGGACTTTTTAACACA 59.394 34.615 0.00 0.00 32.29 3.72
2486 2871 7.039313 AGACAAATCTGGGACTTTTTAACAC 57.961 36.000 0.00 0.00 32.29 3.32
2487 2872 7.654022 AAGACAAATCTGGGACTTTTTAACA 57.346 32.000 0.00 0.00 34.48 2.41
2488 2873 8.942338 AAAAGACAAATCTGGGACTTTTTAAC 57.058 30.769 0.00 0.00 34.29 2.01
2489 2874 9.377312 CAAAAAGACAAATCTGGGACTTTTTAA 57.623 29.630 0.00 0.00 39.49 1.52
2490 2875 7.494298 GCAAAAAGACAAATCTGGGACTTTTTA 59.506 33.333 0.00 0.00 39.49 1.52
2491 2876 6.316140 GCAAAAAGACAAATCTGGGACTTTTT 59.684 34.615 0.00 0.00 40.59 1.94
2492 2877 5.817296 GCAAAAAGACAAATCTGGGACTTTT 59.183 36.000 0.00 0.00 36.76 2.27
2493 2878 5.104982 TGCAAAAAGACAAATCTGGGACTTT 60.105 36.000 0.00 0.00 34.48 2.66
2494 2879 4.405358 TGCAAAAAGACAAATCTGGGACTT 59.595 37.500 0.00 0.00 34.48 3.01
2495 2880 3.960102 TGCAAAAAGACAAATCTGGGACT 59.040 39.130 0.00 0.00 34.48 3.85
2496 2881 4.051237 GTGCAAAAAGACAAATCTGGGAC 58.949 43.478 0.00 0.00 34.48 4.46
2497 2882 3.703556 TGTGCAAAAAGACAAATCTGGGA 59.296 39.130 0.00 0.00 34.48 4.37
2498 2883 4.057406 TGTGCAAAAAGACAAATCTGGG 57.943 40.909 0.00 0.00 34.48 4.45
2499 2884 4.270808 GGTTGTGCAAAAAGACAAATCTGG 59.729 41.667 0.00 0.00 34.48 3.86
2500 2885 4.270808 GGGTTGTGCAAAAAGACAAATCTG 59.729 41.667 0.00 0.00 34.48 2.90
2501 2886 4.162131 AGGGTTGTGCAAAAAGACAAATCT 59.838 37.500 0.00 0.00 36.42 2.40
2502 2887 4.441792 AGGGTTGTGCAAAAAGACAAATC 58.558 39.130 0.00 0.00 0.00 2.17
2503 2888 4.486125 AGGGTTGTGCAAAAAGACAAAT 57.514 36.364 0.00 0.00 0.00 2.32
2504 2889 3.971245 AGGGTTGTGCAAAAAGACAAA 57.029 38.095 0.00 0.00 0.00 2.83
2505 2890 3.971245 AAGGGTTGTGCAAAAAGACAA 57.029 38.095 0.00 0.00 0.00 3.18
2506 2891 5.606348 AATAAGGGTTGTGCAAAAAGACA 57.394 34.783 0.00 0.00 0.00 3.41
2507 2892 6.045955 TGAAATAAGGGTTGTGCAAAAAGAC 58.954 36.000 0.00 0.00 0.00 3.01
2508 2893 6.227298 TGAAATAAGGGTTGTGCAAAAAGA 57.773 33.333 0.00 0.00 0.00 2.52
2509 2894 6.538381 AGTTGAAATAAGGGTTGTGCAAAAAG 59.462 34.615 0.00 0.00 0.00 2.27
2510 2895 6.410540 AGTTGAAATAAGGGTTGTGCAAAAA 58.589 32.000 0.00 0.00 0.00 1.94
2511 2896 5.983540 AGTTGAAATAAGGGTTGTGCAAAA 58.016 33.333 0.00 0.00 0.00 2.44
2512 2897 5.606348 AGTTGAAATAAGGGTTGTGCAAA 57.394 34.783 0.00 0.00 0.00 3.68
2513 2898 5.606348 AAGTTGAAATAAGGGTTGTGCAA 57.394 34.783 0.00 0.00 0.00 4.08
2514 2899 6.909550 ATAAGTTGAAATAAGGGTTGTGCA 57.090 33.333 0.00 0.00 0.00 4.57
2515 2900 8.495148 CAAAATAAGTTGAAATAAGGGTTGTGC 58.505 33.333 0.00 0.00 0.00 4.57
2516 2901 8.495148 GCAAAATAAGTTGAAATAAGGGTTGTG 58.505 33.333 0.00 0.00 0.00 3.33
2517 2902 7.659799 GGCAAAATAAGTTGAAATAAGGGTTGT 59.340 33.333 0.00 0.00 0.00 3.32
2518 2903 7.119116 GGGCAAAATAAGTTGAAATAAGGGTTG 59.881 37.037 0.00 0.00 0.00 3.77
2519 2904 7.017155 AGGGCAAAATAAGTTGAAATAAGGGTT 59.983 33.333 0.00 0.00 0.00 4.11
2520 2905 6.500400 AGGGCAAAATAAGTTGAAATAAGGGT 59.500 34.615 0.00 0.00 0.00 4.34
2521 2906 6.818142 CAGGGCAAAATAAGTTGAAATAAGGG 59.182 38.462 0.00 0.00 0.00 3.95
2522 2907 7.610865 TCAGGGCAAAATAAGTTGAAATAAGG 58.389 34.615 0.00 0.00 0.00 2.69
2523 2908 9.487790 TTTCAGGGCAAAATAAGTTGAAATAAG 57.512 29.630 0.00 0.00 30.67 1.73
2524 2909 9.838339 TTTTCAGGGCAAAATAAGTTGAAATAA 57.162 25.926 0.00 0.00 34.31 1.40
2526 2911 8.922931 ATTTTCAGGGCAAAATAAGTTGAAAT 57.077 26.923 0.00 0.00 34.77 2.17
2527 2912 8.744568 AATTTTCAGGGCAAAATAAGTTGAAA 57.255 26.923 0.00 0.00 35.35 2.69
2528 2913 8.744568 AAATTTTCAGGGCAAAATAAGTTGAA 57.255 26.923 0.00 0.00 35.35 2.69
2529 2914 7.443879 GGAAATTTTCAGGGCAAAATAAGTTGA 59.556 33.333 11.09 0.00 35.35 3.18
2530 2915 7.228308 TGGAAATTTTCAGGGCAAAATAAGTTG 59.772 33.333 11.09 0.00 35.35 3.16
2531 2916 7.228507 GTGGAAATTTTCAGGGCAAAATAAGTT 59.771 33.333 11.09 0.00 35.35 2.66
2532 2917 6.710295 GTGGAAATTTTCAGGGCAAAATAAGT 59.290 34.615 11.09 0.00 35.35 2.24
2533 2918 6.709846 TGTGGAAATTTTCAGGGCAAAATAAG 59.290 34.615 11.09 0.00 35.35 1.73
2534 2919 6.595682 TGTGGAAATTTTCAGGGCAAAATAA 58.404 32.000 11.09 0.00 35.35 1.40
2535 2920 6.179906 TGTGGAAATTTTCAGGGCAAAATA 57.820 33.333 11.09 0.00 35.35 1.40
2536 2921 5.046288 TGTGGAAATTTTCAGGGCAAAAT 57.954 34.783 11.09 0.00 37.53 1.82
2537 2922 4.494091 TGTGGAAATTTTCAGGGCAAAA 57.506 36.364 11.09 0.00 0.00 2.44
2538 2923 4.141528 ACATGTGGAAATTTTCAGGGCAAA 60.142 37.500 11.09 0.00 0.00 3.68
2539 2924 3.390639 ACATGTGGAAATTTTCAGGGCAA 59.609 39.130 11.09 0.00 0.00 4.52
2540 2925 2.971330 ACATGTGGAAATTTTCAGGGCA 59.029 40.909 11.09 0.00 0.00 5.36
2541 2926 3.244181 ACACATGTGGAAATTTTCAGGGC 60.244 43.478 28.64 0.00 34.19 5.19
2542 2927 4.309099 CACACATGTGGAAATTTTCAGGG 58.691 43.478 28.64 0.00 42.10 4.45
2550 2935 8.936203 ATGAAGGCATAACACACATGTGGAAAT 61.936 37.037 28.64 13.79 40.65 2.17
2551 2936 7.698512 ATGAAGGCATAACACACATGTGGAAA 61.699 38.462 28.64 12.15 40.65 3.13
2552 2937 6.272223 ATGAAGGCATAACACACATGTGGAA 61.272 40.000 28.64 11.81 40.65 3.53
2553 2938 4.810376 ATGAAGGCATAACACACATGTGGA 60.810 41.667 28.64 11.99 40.65 4.02
2554 2939 3.444742 ATGAAGGCATAACACACATGTGG 59.555 43.478 28.64 19.34 40.65 4.17
2555 2940 4.082625 ACATGAAGGCATAACACACATGTG 60.083 41.667 24.25 24.25 42.90 3.21
2556 2941 4.081406 ACATGAAGGCATAACACACATGT 58.919 39.130 0.00 0.00 40.84 3.21
2557 2942 4.707030 ACATGAAGGCATAACACACATG 57.293 40.909 0.00 0.00 39.27 3.21
2558 2943 7.720957 ACATATACATGAAGGCATAACACACAT 59.279 33.333 0.00 0.00 35.96 3.21
2559 2944 7.053498 ACATATACATGAAGGCATAACACACA 58.947 34.615 0.00 0.00 35.96 3.72
2560 2945 7.496529 ACATATACATGAAGGCATAACACAC 57.503 36.000 0.00 0.00 35.96 3.82
2561 2946 8.404765 CAAACATATACATGAAGGCATAACACA 58.595 33.333 0.00 0.00 35.96 3.72
2562 2947 8.405531 ACAAACATATACATGAAGGCATAACAC 58.594 33.333 0.00 0.00 35.96 3.32
2563 2948 8.518430 ACAAACATATACATGAAGGCATAACA 57.482 30.769 0.00 0.00 35.96 2.41
2564 2949 9.801873 AAACAAACATATACATGAAGGCATAAC 57.198 29.630 0.00 0.00 35.96 1.89
2626 3011 9.548208 GGTTTTGAAAATTTTGAATTTTGTCGA 57.452 25.926 8.47 1.43 32.03 4.20
2627 3012 8.511505 CGGTTTTGAAAATTTTGAATTTTGTCG 58.488 29.630 8.47 2.19 32.03 4.35
2628 3013 9.548208 TCGGTTTTGAAAATTTTGAATTTTGTC 57.452 25.926 8.47 4.23 32.03 3.18
2629 3014 9.553418 CTCGGTTTTGAAAATTTTGAATTTTGT 57.447 25.926 8.47 0.00 32.03 2.83
2630 3015 8.522661 GCTCGGTTTTGAAAATTTTGAATTTTG 58.477 29.630 8.47 0.00 32.03 2.44
2631 3016 8.458052 AGCTCGGTTTTGAAAATTTTGAATTTT 58.542 25.926 8.47 10.24 34.30 1.82
2632 3017 7.984391 AGCTCGGTTTTGAAAATTTTGAATTT 58.016 26.923 8.47 0.00 0.00 1.82
2633 3018 7.552458 AGCTCGGTTTTGAAAATTTTGAATT 57.448 28.000 8.47 0.00 0.00 2.17
2634 3019 7.279758 TGAAGCTCGGTTTTGAAAATTTTGAAT 59.720 29.630 8.47 0.00 0.00 2.57
2635 3020 6.591834 TGAAGCTCGGTTTTGAAAATTTTGAA 59.408 30.769 8.47 3.01 0.00 2.69
2636 3021 6.102663 TGAAGCTCGGTTTTGAAAATTTTGA 58.897 32.000 8.47 0.00 0.00 2.69
2637 3022 6.343226 TGAAGCTCGGTTTTGAAAATTTTG 57.657 33.333 8.47 0.00 0.00 2.44
2638 3023 6.018016 CCATGAAGCTCGGTTTTGAAAATTTT 60.018 34.615 2.28 2.28 0.00 1.82
2639 3024 5.466393 CCATGAAGCTCGGTTTTGAAAATTT 59.534 36.000 0.00 0.00 0.00 1.82
2640 3025 4.990426 CCATGAAGCTCGGTTTTGAAAATT 59.010 37.500 0.00 0.00 0.00 1.82
2641 3026 4.280677 TCCATGAAGCTCGGTTTTGAAAAT 59.719 37.500 0.00 0.00 0.00 1.82
2642 3027 3.634448 TCCATGAAGCTCGGTTTTGAAAA 59.366 39.130 0.00 0.00 0.00 2.29
2643 3028 3.218453 TCCATGAAGCTCGGTTTTGAAA 58.782 40.909 0.00 0.00 0.00 2.69
2644 3029 2.813754 CTCCATGAAGCTCGGTTTTGAA 59.186 45.455 0.00 0.00 0.00 2.69
2645 3030 2.426522 CTCCATGAAGCTCGGTTTTGA 58.573 47.619 0.00 0.00 0.00 2.69
2646 3031 1.135575 GCTCCATGAAGCTCGGTTTTG 60.136 52.381 0.00 0.00 39.27 2.44
2647 3032 1.168714 GCTCCATGAAGCTCGGTTTT 58.831 50.000 0.00 0.00 39.27 2.43
2648 3033 2.859992 GCTCCATGAAGCTCGGTTT 58.140 52.632 0.00 0.00 39.27 3.27
2649 3034 4.625800 GCTCCATGAAGCTCGGTT 57.374 55.556 0.00 0.00 39.27 4.44
2655 3040 2.899339 GGCCGAGCTCCATGAAGC 60.899 66.667 8.47 0.00 42.82 3.86
2656 3041 1.227497 GAGGCCGAGCTCCATGAAG 60.227 63.158 8.47 0.00 0.00 3.02
2657 3042 2.735772 GGAGGCCGAGCTCCATGAA 61.736 63.158 8.47 0.00 39.45 2.57
2658 3043 3.157252 GGAGGCCGAGCTCCATGA 61.157 66.667 8.47 0.00 39.45 3.07
2659 3044 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
2661 3046 2.927856 TTTGGAGGCCGAGCTCCA 60.928 61.111 8.47 7.35 46.84 3.86
2662 3047 2.124942 CTTTGGAGGCCGAGCTCC 60.125 66.667 8.47 0.00 40.05 4.70
2663 3048 1.448717 GTCTTTGGAGGCCGAGCTC 60.449 63.158 2.73 2.73 0.00 4.09
2664 3049 1.768684 TTGTCTTTGGAGGCCGAGCT 61.769 55.000 0.00 0.00 0.00 4.09
2665 3050 0.678048 ATTGTCTTTGGAGGCCGAGC 60.678 55.000 0.00 0.00 0.00 5.03
2666 3051 2.691409 TATTGTCTTTGGAGGCCGAG 57.309 50.000 0.00 0.00 0.00 4.63
2667 3052 2.158813 GGATATTGTCTTTGGAGGCCGA 60.159 50.000 0.00 0.00 0.00 5.54
2668 3053 2.222027 GGATATTGTCTTTGGAGGCCG 58.778 52.381 0.00 0.00 0.00 6.13
2669 3054 3.297134 TGGATATTGTCTTTGGAGGCC 57.703 47.619 0.00 0.00 0.00 5.19
2670 3055 8.049117 TCATATATGGATATTGTCTTTGGAGGC 58.951 37.037 12.78 0.00 0.00 4.70
2671 3056 9.610705 CTCATATATGGATATTGTCTTTGGAGG 57.389 37.037 12.78 0.00 0.00 4.30
2674 3059 9.948964 TGTCTCATATATGGATATTGTCTTTGG 57.051 33.333 12.78 0.00 0.00 3.28
2686 3071 9.813826 TCTCTAAGATTGTGTCTCATATATGGA 57.186 33.333 12.78 6.37 35.67 3.41
2694 3079 9.996554 TGTTTAATTCTCTAAGATTGTGTCTCA 57.003 29.630 0.00 0.00 35.67 3.27
2746 3131 8.911662 CCGTTTCCAAATTAATTTCTGTTACTG 58.088 33.333 10.53 0.00 0.00 2.74
2988 3396 4.212636 CCGTAGTTCACTTTTGACGGATTT 59.787 41.667 11.94 0.00 39.08 2.17
3009 3460 1.372582 CAGATCACATGGTTGTCCCG 58.627 55.000 0.00 0.00 32.34 5.14
3015 3466 4.228210 ACCAATAGTCCAGATCACATGGTT 59.772 41.667 0.00 0.00 39.01 3.67
3022 3477 4.441495 CGTGCTTACCAATAGTCCAGATCA 60.441 45.833 0.00 0.00 0.00 2.92
3052 3507 3.247173 CAGCGATTTCATCTTGCTAGACC 59.753 47.826 0.00 0.00 33.90 3.85
3053 3508 4.115516 TCAGCGATTTCATCTTGCTAGAC 58.884 43.478 0.00 0.00 33.90 2.59
3057 3512 4.771590 TTTTCAGCGATTTCATCTTGCT 57.228 36.364 0.00 0.00 36.05 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.