Multiple sequence alignment - TraesCS7D01G223500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G223500 chr7D 100.000 3296 0 0 1 3296 184513660 184516955 0.000000e+00 6087.0
1 TraesCS7D01G223500 chr7D 87.474 1445 142 20 1039 2465 184559868 184561291 0.000000e+00 1629.0
2 TraesCS7D01G223500 chr7D 86.636 217 13 7 803 1013 184559537 184559743 3.310000e-55 226.0
3 TraesCS7D01G223500 chr7B 95.238 1869 65 13 611 2472 153594280 153596131 0.000000e+00 2937.0
4 TraesCS7D01G223500 chr7B 88.147 1392 143 11 1040 2426 154144357 154145731 0.000000e+00 1637.0
5 TraesCS7D01G223500 chr7B 90.415 626 35 6 1 620 153593225 153593831 0.000000e+00 800.0
6 TraesCS7D01G223500 chr7B 94.595 185 7 3 3114 3296 64971362 64971179 1.940000e-72 283.0
7 TraesCS7D01G223500 chr7B 85.664 286 19 9 750 1013 154143946 154144231 6.960000e-72 281.0
8 TraesCS7D01G223500 chr7B 81.319 182 18 6 2471 2638 70071409 70071588 2.060000e-27 134.0
9 TraesCS7D01G223500 chr7A 94.536 1885 93 5 505 2382 185983143 185981262 0.000000e+00 2902.0
10 TraesCS7D01G223500 chr7A 87.384 1395 146 17 1039 2424 191660439 191661812 0.000000e+00 1574.0
11 TraesCS7D01G223500 chr7A 93.947 413 24 1 2578 2989 185979628 185979216 1.000000e-174 623.0
12 TraesCS7D01G223500 chr7A 92.355 327 14 4 1 325 185983565 185983248 3.880000e-124 455.0
13 TraesCS7D01G223500 chr7A 83.217 286 26 8 750 1013 191660029 191660314 3.290000e-60 243.0
14 TraesCS7D01G223500 chr7A 88.177 203 16 2 2379 2580 185981182 185980987 5.500000e-58 235.0
15 TraesCS7D01G223500 chr7A 91.589 107 3 1 3009 3109 185979163 185979057 3.430000e-30 143.0
16 TraesCS7D01G223500 chr7A 89.691 97 4 1 424 514 185983255 185983159 5.780000e-23 119.0
17 TraesCS7D01G223500 chr7A 77.622 143 28 2 2494 2632 725164722 725164580 2.110000e-12 84.2
18 TraesCS7D01G223500 chr7A 78.195 133 21 4 2471 2595 663369985 663369853 9.810000e-11 78.7
19 TraesCS7D01G223500 chr6D 99.465 187 1 0 3110 3296 460766366 460766180 1.130000e-89 340.0
20 TraesCS7D01G223500 chr6D 81.879 149 16 2 2501 2638 331963551 331963403 7.470000e-22 115.0
21 TraesCS7D01G223500 chr3D 99.465 187 1 0 3110 3296 375225202 375225388 1.130000e-89 340.0
22 TraesCS7D01G223500 chr3D 93.011 186 13 0 3111 3296 363070732 363070547 4.190000e-69 272.0
23 TraesCS7D01G223500 chr1D 99.465 187 1 0 3110 3296 267388387 267388573 1.130000e-89 340.0
24 TraesCS7D01G223500 chr1D 87.912 91 11 0 2464 2554 34809371 34809281 1.250000e-19 108.0
25 TraesCS7D01G223500 chr1D 78.333 180 23 4 2471 2634 252487337 252487516 5.820000e-18 102.0
26 TraesCS7D01G223500 chr1D 84.783 92 14 0 2471 2562 108819242 108819151 3.500000e-15 93.5
27 TraesCS7D01G223500 chr4D 98.396 187 3 0 3110 3296 85734242 85734056 2.450000e-86 329.0
28 TraesCS7D01G223500 chr3A 97.312 186 5 0 3111 3296 701759766 701759951 1.910000e-82 316.0
29 TraesCS7D01G223500 chr5B 96.791 187 6 0 3110 3296 485815623 485815809 2.470000e-81 313.0
30 TraesCS7D01G223500 chr5B 83.146 89 12 1 1326 1414 440288551 440288466 9.810000e-11 78.7
31 TraesCS7D01G223500 chr6B 94.086 186 11 0 3111 3296 331340686 331340501 1.940000e-72 283.0
32 TraesCS7D01G223500 chr5A 80.108 186 22 5 2468 2638 487808314 487808129 1.240000e-24 124.0
33 TraesCS7D01G223500 chr2D 80.814 172 21 5 2475 2634 36445771 36445942 1.240000e-24 124.0
34 TraesCS7D01G223500 chr2D 78.571 182 24 4 2468 2634 223550658 223550839 4.500000e-19 106.0
35 TraesCS7D01G223500 chr3B 91.139 79 6 1 2557 2634 193885570 193885648 4.500000e-19 106.0
36 TraesCS7D01G223500 chr4B 91.026 78 6 1 2557 2634 522439454 522439378 1.620000e-18 104.0
37 TraesCS7D01G223500 chr4B 90.000 70 7 0 2478 2547 41557635 41557566 1.260000e-14 91.6
38 TraesCS7D01G223500 chr4B 77.095 179 27 8 2467 2633 373979873 373979697 1.260000e-14 91.6
39 TraesCS7D01G223500 chr4A 78.409 176 24 9 2467 2631 182222299 182222471 5.820000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G223500 chr7D 184513660 184516955 3295 False 6087.000000 6087 100.000000 1 3296 1 chr7D.!!$F1 3295
1 TraesCS7D01G223500 chr7D 184559537 184561291 1754 False 927.500000 1629 87.055000 803 2465 2 chr7D.!!$F2 1662
2 TraesCS7D01G223500 chr7B 153593225 153596131 2906 False 1868.500000 2937 92.826500 1 2472 2 chr7B.!!$F2 2471
3 TraesCS7D01G223500 chr7B 154143946 154145731 1785 False 959.000000 1637 86.905500 750 2426 2 chr7B.!!$F3 1676
4 TraesCS7D01G223500 chr7A 191660029 191661812 1783 False 908.500000 1574 85.300500 750 2424 2 chr7A.!!$F1 1674
5 TraesCS7D01G223500 chr7A 185979057 185983565 4508 True 746.166667 2902 91.715833 1 3109 6 chr7A.!!$R3 3108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.167251 CGGGTGTGAAATTGCCGTAC 59.833 55.0 0.0 0.0 0.0 3.67 F
1428 2046 1.052124 ACCCGACCAAGTCTTCCACA 61.052 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 2109 1.760613 CCGATTTGGTAGAGGCAGGTA 59.239 52.381 0.0 0.0 0.0 3.08 R
3116 5236 0.108662 GCAAGCTGGGCAATACAACC 60.109 55.000 5.8 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 2.561419 GGTCAGAGCACTACACCTGTAA 59.439 50.000 4.69 0.00 0.00 2.41
91 92 3.576648 GTCAGAGCACTACACCTGTAAC 58.423 50.000 0.00 0.00 0.00 2.50
92 93 2.561419 TCAGAGCACTACACCTGTAACC 59.439 50.000 0.00 0.00 0.00 2.85
93 94 2.299013 CAGAGCACTACACCTGTAACCA 59.701 50.000 0.00 0.00 0.00 3.67
94 95 2.969950 AGAGCACTACACCTGTAACCAA 59.030 45.455 0.00 0.00 0.00 3.67
95 96 3.389983 AGAGCACTACACCTGTAACCAAA 59.610 43.478 0.00 0.00 0.00 3.28
96 97 4.131596 GAGCACTACACCTGTAACCAAAA 58.868 43.478 0.00 0.00 0.00 2.44
97 98 4.528920 AGCACTACACCTGTAACCAAAAA 58.471 39.130 0.00 0.00 0.00 1.94
147 148 3.930848 GGAGTACTACGGGTGTGAAATTG 59.069 47.826 0.00 0.00 0.00 2.32
153 154 0.167251 CGGGTGTGAAATTGCCGTAC 59.833 55.000 0.00 0.00 0.00 3.67
174 175 5.248870 ACAAACTTCTGATGCTTCGTTTT 57.751 34.783 0.00 0.00 0.00 2.43
371 373 8.331742 CAAAGTTTATTGCCGTGTTTTATTGTT 58.668 29.630 0.00 0.00 0.00 2.83
396 398 3.629398 CCAGCAAATTCGCTAGGAAAGAT 59.371 43.478 0.00 0.00 41.38 2.40
397 399 4.497006 CCAGCAAATTCGCTAGGAAAGATG 60.497 45.833 0.00 0.00 41.38 2.90
417 419 4.359434 TGGCACTCTTATTTGTGGTACA 57.641 40.909 0.00 0.00 34.99 2.90
437 439 7.114920 GGTACACAACGAAATATTATGACACG 58.885 38.462 0.00 0.00 0.00 4.49
450 452 9.840427 AATATTATGACACGTTTTGAAAGAAGG 57.160 29.630 0.00 0.00 0.00 3.46
451 453 4.568152 ATGACACGTTTTGAAAGAAGGG 57.432 40.909 0.00 0.00 0.00 3.95
533 568 5.521372 CGTGTGATATGAATCTCAAAGCAGA 59.479 40.000 0.00 0.00 37.36 4.26
534 569 6.292221 CGTGTGATATGAATCTCAAAGCAGAG 60.292 42.308 0.00 0.00 37.36 3.35
563 598 7.973944 AGAAATAATTTCCATACTTTTCACGCC 59.026 33.333 0.00 0.00 40.54 5.68
668 1161 9.411801 AGTGTGAAGCAAATCTATACATATACG 57.588 33.333 0.00 0.00 0.00 3.06
723 1217 7.452813 ACAGCTATATTCATCCACTAGATCACA 59.547 37.037 0.00 0.00 30.59 3.58
728 1222 2.495669 TCATCCACTAGATCACAACGCA 59.504 45.455 0.00 0.00 30.59 5.24
1428 2046 1.052124 ACCCGACCAAGTCTTCCACA 61.052 55.000 0.00 0.00 0.00 4.17
1584 2202 0.957395 TCTCCTCGTCGCGTACCTTT 60.957 55.000 5.77 0.00 0.00 3.11
1749 2367 1.763120 TCACAACATGAGCAGGCCT 59.237 52.632 0.00 0.00 31.91 5.19
1902 2520 3.487202 CCGCCATCCGTGTTCACG 61.487 66.667 16.87 16.87 34.38 4.35
2334 2958 1.831106 AGAAGTGACCCATGCGTATCA 59.169 47.619 0.00 0.00 0.00 2.15
2375 3001 1.867233 CGGCTGCATGTGTTAGTATCC 59.133 52.381 0.50 0.00 0.00 2.59
2426 3145 3.324108 GGGTTGAGGCGGTGGGTA 61.324 66.667 0.00 0.00 0.00 3.69
2478 3197 6.094603 AGCTGATTTGAGAACAATTTCGCTAT 59.905 34.615 0.00 0.00 36.78 2.97
2483 3202 6.408858 TTGAGAACAATTTCGCTATGTCTC 57.591 37.500 0.00 0.00 36.78 3.36
2484 3203 5.478407 TGAGAACAATTTCGCTATGTCTCA 58.522 37.500 0.00 0.00 36.78 3.27
2485 3204 5.578336 TGAGAACAATTTCGCTATGTCTCAG 59.422 40.000 0.00 0.00 36.78 3.35
2486 3205 5.482908 AGAACAATTTCGCTATGTCTCAGT 58.517 37.500 0.00 0.00 36.78 3.41
2487 3206 5.578727 AGAACAATTTCGCTATGTCTCAGTC 59.421 40.000 0.00 0.00 36.78 3.51
2488 3207 3.859961 ACAATTTCGCTATGTCTCAGTCG 59.140 43.478 0.00 0.00 0.00 4.18
2489 3208 4.105486 CAATTTCGCTATGTCTCAGTCGA 58.895 43.478 0.00 0.00 0.00 4.20
2547 3266 8.857694 ATTTCTTGGATTTTGCATTGAGATTT 57.142 26.923 0.00 0.00 0.00 2.17
2548 3267 7.661127 TTCTTGGATTTTGCATTGAGATTTG 57.339 32.000 0.00 0.00 0.00 2.32
2551 3270 7.814107 TCTTGGATTTTGCATTGAGATTTGTAC 59.186 33.333 0.00 0.00 0.00 2.90
2559 3278 8.659925 TTGCATTGAGATTTGTACAATGTTTT 57.340 26.923 9.56 0.00 46.82 2.43
2604 4684 6.903883 TCACTTGACTGAGACTTGTTTAAC 57.096 37.500 0.00 0.00 0.00 2.01
2608 4688 6.981559 ACTTGACTGAGACTTGTTTAACTCTC 59.018 38.462 6.06 6.06 0.00 3.20
2609 4689 5.844004 TGACTGAGACTTGTTTAACTCTCC 58.156 41.667 9.37 0.00 29.69 3.71
2659 4739 0.810426 GAAGAATTCTCCGTCGCCCC 60.810 60.000 8.78 0.00 43.23 5.80
2682 4762 1.056660 AACCGACCATGTCTCCTGTT 58.943 50.000 0.00 0.00 0.00 3.16
2772 4852 4.142315 CCATGGCCTCACAGAAAACTTATG 60.142 45.833 3.32 0.00 0.00 1.90
2784 4864 8.621286 CACAGAAAACTTATGTACTCAAACCTT 58.379 33.333 0.00 0.00 0.00 3.50
2814 4895 5.474545 CGCATTGATATGAAAAACTTTGCG 58.525 37.500 4.41 4.41 42.34 4.85
2819 4900 8.649841 CATTGATATGAAAAACTTTGCGTTCAT 58.350 29.630 0.00 0.00 42.05 2.57
2829 4910 3.189287 ACTTTGCGTTCATCCAACTGATC 59.811 43.478 0.00 0.00 32.09 2.92
2836 4917 5.114780 CGTTCATCCAACTGATCTGAGAAT 58.885 41.667 6.60 0.00 32.09 2.40
2893 4974 3.879295 CCGTCCTATCATGCATCTTGTTT 59.121 43.478 0.00 0.00 0.00 2.83
2903 4984 7.692460 TCATGCATCTTGTTTCAAGAGTTAT 57.308 32.000 15.59 8.16 0.00 1.89
2959 5040 1.285962 ACTTAAGTGCATCCATGGCCT 59.714 47.619 7.48 0.00 0.00 5.19
2960 5041 1.952296 CTTAAGTGCATCCATGGCCTC 59.048 52.381 6.96 0.00 0.00 4.70
2961 5042 0.183492 TAAGTGCATCCATGGCCTCC 59.817 55.000 6.96 0.00 0.00 4.30
2963 5044 1.527844 GTGCATCCATGGCCTCCTC 60.528 63.158 6.96 0.00 0.00 3.71
2964 5045 2.281345 GCATCCATGGCCTCCTCG 60.281 66.667 6.96 0.00 0.00 4.63
2989 5070 6.771188 AAATTTATATGCTCGTCTCTTCCG 57.229 37.500 0.00 0.00 0.00 4.30
3102 5222 1.724654 CGTTGTCGCCACTAACATTGC 60.725 52.381 0.00 0.00 0.00 3.56
3105 5225 2.158559 TGTCGCCACTAACATTGCATT 58.841 42.857 0.00 0.00 0.00 3.56
3109 5229 2.094803 CGCCACTAACATTGCATTCCAA 60.095 45.455 0.00 0.00 37.94 3.53
3110 5230 3.514645 GCCACTAACATTGCATTCCAAG 58.485 45.455 0.00 0.00 36.76 3.61
3111 5231 3.514645 CCACTAACATTGCATTCCAAGC 58.485 45.455 0.00 0.00 36.76 4.01
3112 5232 3.173599 CACTAACATTGCATTCCAAGCG 58.826 45.455 0.00 0.00 36.76 4.68
3113 5233 2.819608 ACTAACATTGCATTCCAAGCGT 59.180 40.909 0.00 0.00 36.76 5.07
3114 5234 2.818130 AACATTGCATTCCAAGCGTT 57.182 40.000 0.00 0.00 36.76 4.84
3115 5235 2.818130 ACATTGCATTCCAAGCGTTT 57.182 40.000 0.00 0.00 36.76 3.60
3116 5236 2.406130 ACATTGCATTCCAAGCGTTTG 58.594 42.857 4.84 4.84 36.76 2.93
3127 5247 2.058057 CAAGCGTTTGGTTGTATTGCC 58.942 47.619 3.77 0.00 46.05 4.52
3128 5248 0.601057 AGCGTTTGGTTGTATTGCCC 59.399 50.000 0.00 0.00 0.00 5.36
3129 5249 0.315568 GCGTTTGGTTGTATTGCCCA 59.684 50.000 0.00 0.00 0.00 5.36
3130 5250 1.668628 GCGTTTGGTTGTATTGCCCAG 60.669 52.381 0.00 0.00 0.00 4.45
3131 5251 1.668628 CGTTTGGTTGTATTGCCCAGC 60.669 52.381 0.00 0.00 0.00 4.85
3132 5252 1.618343 GTTTGGTTGTATTGCCCAGCT 59.382 47.619 0.00 0.00 0.00 4.24
3133 5253 2.008242 TTGGTTGTATTGCCCAGCTT 57.992 45.000 0.00 0.00 0.00 3.74
3134 5254 1.255882 TGGTTGTATTGCCCAGCTTG 58.744 50.000 0.00 0.00 0.00 4.01
3135 5255 0.108662 GGTTGTATTGCCCAGCTTGC 60.109 55.000 0.00 0.00 0.00 4.01
3136 5256 0.108662 GTTGTATTGCCCAGCTTGCC 60.109 55.000 2.68 0.00 0.00 4.52
3137 5257 1.257055 TTGTATTGCCCAGCTTGCCC 61.257 55.000 2.68 0.00 0.00 5.36
3138 5258 1.682005 GTATTGCCCAGCTTGCCCA 60.682 57.895 2.68 0.00 0.00 5.36
3139 5259 1.044790 GTATTGCCCAGCTTGCCCAT 61.045 55.000 2.68 0.00 0.00 4.00
3140 5260 0.555280 TATTGCCCAGCTTGCCCATA 59.445 50.000 2.68 0.00 0.00 2.74
3141 5261 0.757935 ATTGCCCAGCTTGCCCATAG 60.758 55.000 2.68 0.00 0.00 2.23
3142 5262 3.222121 GCCCAGCTTGCCCATAGC 61.222 66.667 0.00 0.00 44.14 2.97
3147 5267 1.153005 AGCTTGCCCATAGCTGAGC 60.153 57.895 0.00 0.00 46.71 4.26
3148 5268 1.153005 GCTTGCCCATAGCTGAGCT 60.153 57.895 13.25 13.25 43.57 4.09
3149 5269 0.107456 GCTTGCCCATAGCTGAGCTA 59.893 55.000 17.49 17.49 45.55 3.32
3150 5270 1.877258 GCTTGCCCATAGCTGAGCTAG 60.877 57.143 19.89 11.32 44.66 3.42
3175 5295 2.425578 CTAGCTTAGCTCGGTTAGGC 57.574 55.000 11.09 0.00 40.44 3.93
3176 5296 1.957877 CTAGCTTAGCTCGGTTAGGCT 59.042 52.381 11.09 8.70 40.44 4.58
3177 5297 2.068834 AGCTTAGCTCGGTTAGGCTA 57.931 50.000 0.00 0.00 39.65 3.93
3178 5298 1.682323 AGCTTAGCTCGGTTAGGCTAC 59.318 52.381 0.00 0.00 40.21 3.58
3179 5299 1.269673 GCTTAGCTCGGTTAGGCTACC 60.270 57.143 0.00 0.00 40.21 3.18
3180 5300 2.308690 CTTAGCTCGGTTAGGCTACCT 58.691 52.381 0.00 0.00 40.21 3.08
3181 5301 2.449137 TAGCTCGGTTAGGCTACCTT 57.551 50.000 0.00 0.00 39.65 3.50
3182 5302 1.569653 AGCTCGGTTAGGCTACCTTT 58.430 50.000 0.00 0.00 37.00 3.11
3183 5303 1.207329 AGCTCGGTTAGGCTACCTTTG 59.793 52.381 0.00 0.00 37.00 2.77
3184 5304 1.653151 CTCGGTTAGGCTACCTTTGC 58.347 55.000 0.00 0.00 35.97 3.68
3191 5311 3.884226 GGCTACCTTTGCCTTAGCT 57.116 52.632 0.00 0.00 46.38 3.32
3192 5312 1.383523 GGCTACCTTTGCCTTAGCTG 58.616 55.000 0.00 0.00 46.38 4.24
3193 5313 0.735471 GCTACCTTTGCCTTAGCTGC 59.265 55.000 0.00 0.00 40.80 5.25
3194 5314 1.950484 GCTACCTTTGCCTTAGCTGCA 60.950 52.381 1.02 0.00 40.80 4.41
3195 5315 1.740025 CTACCTTTGCCTTAGCTGCAC 59.260 52.381 1.02 0.00 38.72 4.57
3196 5316 1.237285 ACCTTTGCCTTAGCTGCACG 61.237 55.000 1.02 0.00 38.72 5.34
3197 5317 1.237285 CCTTTGCCTTAGCTGCACGT 61.237 55.000 1.02 0.00 38.72 4.49
3198 5318 0.593128 CTTTGCCTTAGCTGCACGTT 59.407 50.000 1.02 0.00 38.72 3.99
3199 5319 1.001378 CTTTGCCTTAGCTGCACGTTT 60.001 47.619 1.02 0.00 38.72 3.60
3200 5320 0.310543 TTGCCTTAGCTGCACGTTTG 59.689 50.000 1.02 0.00 38.72 2.93
3201 5321 1.210155 GCCTTAGCTGCACGTTTGG 59.790 57.895 1.02 0.00 35.50 3.28
3202 5322 1.515521 GCCTTAGCTGCACGTTTGGT 61.516 55.000 1.02 0.00 35.50 3.67
3203 5323 0.951558 CCTTAGCTGCACGTTTGGTT 59.048 50.000 1.02 0.00 0.00 3.67
3204 5324 1.069227 CCTTAGCTGCACGTTTGGTTC 60.069 52.381 1.02 0.00 0.00 3.62
3205 5325 1.601903 CTTAGCTGCACGTTTGGTTCA 59.398 47.619 1.02 0.00 0.00 3.18
3206 5326 1.669604 TAGCTGCACGTTTGGTTCAA 58.330 45.000 1.02 0.00 0.00 2.69
3207 5327 1.032014 AGCTGCACGTTTGGTTCAAT 58.968 45.000 1.02 0.00 0.00 2.57
3208 5328 1.130955 GCTGCACGTTTGGTTCAATG 58.869 50.000 0.00 0.00 0.00 2.82
3209 5329 1.130955 CTGCACGTTTGGTTCAATGC 58.869 50.000 0.00 0.00 30.47 3.56
3210 5330 0.249238 TGCACGTTTGGTTCAATGCC 60.249 50.000 0.00 0.00 29.20 4.40
3211 5331 0.943835 GCACGTTTGGTTCAATGCCC 60.944 55.000 0.00 0.00 0.00 5.36
3212 5332 0.673437 CACGTTTGGTTCAATGCCCT 59.327 50.000 0.00 0.00 0.00 5.19
3213 5333 1.068434 CACGTTTGGTTCAATGCCCTT 59.932 47.619 0.00 0.00 0.00 3.95
3214 5334 1.068434 ACGTTTGGTTCAATGCCCTTG 59.932 47.619 0.00 0.00 36.09 3.61
3215 5335 1.511850 GTTTGGTTCAATGCCCTTGC 58.488 50.000 0.00 0.00 34.66 4.01
3216 5336 1.070601 GTTTGGTTCAATGCCCTTGCT 59.929 47.619 0.00 0.00 38.71 3.91
3217 5337 2.298729 GTTTGGTTCAATGCCCTTGCTA 59.701 45.455 0.00 0.00 38.71 3.49
3218 5338 1.838112 TGGTTCAATGCCCTTGCTAG 58.162 50.000 0.00 0.00 38.71 3.42
3219 5339 0.457443 GGTTCAATGCCCTTGCTAGC 59.543 55.000 8.10 8.10 38.71 3.42
3220 5340 1.176527 GTTCAATGCCCTTGCTAGCA 58.823 50.000 14.93 14.93 44.45 3.49
3221 5341 1.545582 GTTCAATGCCCTTGCTAGCAA 59.454 47.619 27.67 27.67 43.36 3.91
3222 5342 1.176527 TCAATGCCCTTGCTAGCAAC 58.823 50.000 26.06 16.78 43.36 4.17
3223 5343 0.889994 CAATGCCCTTGCTAGCAACA 59.110 50.000 26.06 21.67 43.36 3.33
3224 5344 1.135199 CAATGCCCTTGCTAGCAACAG 60.135 52.381 26.06 19.65 43.36 3.16
3225 5345 1.318158 ATGCCCTTGCTAGCAACAGC 61.318 55.000 28.21 28.21 43.36 4.40
3226 5346 2.704808 GCCCTTGCTAGCAACAGCC 61.705 63.158 26.06 10.86 41.04 4.85
3227 5347 1.303561 CCCTTGCTAGCAACAGCCA 60.304 57.895 26.06 5.13 41.04 4.75
3228 5348 0.682209 CCCTTGCTAGCAACAGCCAT 60.682 55.000 26.06 0.00 41.04 4.40
3229 5349 0.737219 CCTTGCTAGCAACAGCCATC 59.263 55.000 26.06 0.00 41.04 3.51
3230 5350 1.456296 CTTGCTAGCAACAGCCATCA 58.544 50.000 26.06 2.76 41.04 3.07
3231 5351 1.400846 CTTGCTAGCAACAGCCATCAG 59.599 52.381 26.06 9.40 41.04 2.90
3232 5352 1.028330 TGCTAGCAACAGCCATCAGC 61.028 55.000 16.84 0.00 41.04 4.26
3243 5363 1.009829 GCCATCAGCTAGTCGTTTGG 58.990 55.000 0.00 0.00 38.99 3.28
3244 5364 1.676014 GCCATCAGCTAGTCGTTTGGT 60.676 52.381 0.00 0.00 38.99 3.67
3245 5365 2.699954 CCATCAGCTAGTCGTTTGGTT 58.300 47.619 0.00 0.00 0.00 3.67
3246 5366 2.416547 CCATCAGCTAGTCGTTTGGTTG 59.583 50.000 0.00 0.00 0.00 3.77
3247 5367 2.902705 TCAGCTAGTCGTTTGGTTGT 57.097 45.000 0.00 0.00 0.00 3.32
3248 5368 2.479837 TCAGCTAGTCGTTTGGTTGTG 58.520 47.619 0.00 0.00 0.00 3.33
3249 5369 1.069906 CAGCTAGTCGTTTGGTTGTGC 60.070 52.381 0.00 0.00 0.00 4.57
3250 5370 1.202651 AGCTAGTCGTTTGGTTGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
3251 5371 1.069906 GCTAGTCGTTTGGTTGTGCTG 60.070 52.381 0.00 0.00 0.00 4.41
3252 5372 0.941542 TAGTCGTTTGGTTGTGCTGC 59.058 50.000 0.00 0.00 0.00 5.25
3253 5373 1.654137 GTCGTTTGGTTGTGCTGCG 60.654 57.895 0.00 0.00 0.00 5.18
3254 5374 2.353376 CGTTTGGTTGTGCTGCGG 60.353 61.111 0.00 0.00 0.00 5.69
3255 5375 2.027460 GTTTGGTTGTGCTGCGGG 59.973 61.111 0.00 0.00 0.00 6.13
3256 5376 3.910490 TTTGGTTGTGCTGCGGGC 61.910 61.111 0.00 0.00 42.22 6.13
3265 5385 4.785453 GCTGCGGGCAAGGTAGCT 62.785 66.667 0.00 0.00 39.61 3.32
3266 5386 2.512515 CTGCGGGCAAGGTAGCTC 60.513 66.667 0.00 0.00 34.17 4.09
3270 5390 4.716003 GGGCAAGGTAGCTCGTTT 57.284 55.556 0.00 0.00 34.17 3.60
3271 5391 2.942641 GGGCAAGGTAGCTCGTTTT 58.057 52.632 0.00 0.00 34.17 2.43
3272 5392 0.803117 GGGCAAGGTAGCTCGTTTTC 59.197 55.000 0.00 0.00 34.17 2.29
3273 5393 1.519408 GGCAAGGTAGCTCGTTTTCA 58.481 50.000 0.00 0.00 34.17 2.69
3274 5394 1.197036 GGCAAGGTAGCTCGTTTTCAC 59.803 52.381 0.00 0.00 34.17 3.18
3275 5395 1.871039 GCAAGGTAGCTCGTTTTCACA 59.129 47.619 0.00 0.00 0.00 3.58
3276 5396 2.096218 GCAAGGTAGCTCGTTTTCACAG 60.096 50.000 0.00 0.00 0.00 3.66
3277 5397 3.131396 CAAGGTAGCTCGTTTTCACAGT 58.869 45.455 0.00 0.00 0.00 3.55
3278 5398 4.304110 CAAGGTAGCTCGTTTTCACAGTA 58.696 43.478 0.00 0.00 0.00 2.74
3279 5399 4.803098 AGGTAGCTCGTTTTCACAGTAT 57.197 40.909 0.00 0.00 0.00 2.12
3280 5400 4.745649 AGGTAGCTCGTTTTCACAGTATC 58.254 43.478 0.00 0.00 0.00 2.24
3281 5401 3.864003 GGTAGCTCGTTTTCACAGTATCC 59.136 47.826 0.00 0.00 0.00 2.59
3282 5402 3.678056 AGCTCGTTTTCACAGTATCCA 57.322 42.857 0.00 0.00 0.00 3.41
3283 5403 4.002906 AGCTCGTTTTCACAGTATCCAA 57.997 40.909 0.00 0.00 0.00 3.53
3284 5404 4.385825 AGCTCGTTTTCACAGTATCCAAA 58.614 39.130 0.00 0.00 0.00 3.28
3285 5405 5.003804 AGCTCGTTTTCACAGTATCCAAAT 58.996 37.500 0.00 0.00 0.00 2.32
3286 5406 6.170506 AGCTCGTTTTCACAGTATCCAAATA 58.829 36.000 0.00 0.00 0.00 1.40
3287 5407 6.092259 AGCTCGTTTTCACAGTATCCAAATAC 59.908 38.462 0.00 0.00 38.45 1.89
3288 5408 6.128391 GCTCGTTTTCACAGTATCCAAATACA 60.128 38.462 0.00 0.00 40.28 2.29
3289 5409 7.572353 GCTCGTTTTCACAGTATCCAAATACAA 60.572 37.037 0.00 0.00 40.28 2.41
3290 5410 7.802738 TCGTTTTCACAGTATCCAAATACAAG 58.197 34.615 0.00 0.00 40.28 3.16
3291 5411 7.442969 TCGTTTTCACAGTATCCAAATACAAGT 59.557 33.333 0.00 0.00 40.28 3.16
3292 5412 8.714179 CGTTTTCACAGTATCCAAATACAAGTA 58.286 33.333 0.00 0.00 40.28 2.24
3294 5414 7.843490 TTCACAGTATCCAAATACAAGTAGC 57.157 36.000 0.00 0.00 40.28 3.58
3295 5415 7.182817 TCACAGTATCCAAATACAAGTAGCT 57.817 36.000 0.00 0.00 40.28 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.471676 CCTGAAAACGAGGAGGGATCG 60.472 57.143 0.00 0.00 45.54 3.69
106 107 5.454966 ACTCCATACCTTTTCTTTGGTGTT 58.545 37.500 0.00 0.00 37.74 3.32
147 148 2.076863 AGCATCAGAAGTTTGTACGGC 58.923 47.619 0.00 0.00 0.00 5.68
153 154 5.273170 TCAAAACGAAGCATCAGAAGTTTG 58.727 37.500 0.00 0.00 32.94 2.93
357 359 4.861210 TGCTGGTAAACAATAAAACACGG 58.139 39.130 0.00 0.00 0.00 4.94
371 373 3.620427 TCCTAGCGAATTTGCTGGTAA 57.380 42.857 27.38 13.46 46.70 2.85
396 398 4.069304 GTGTACCACAAATAAGAGTGCCA 58.931 43.478 0.00 0.00 34.08 4.92
397 399 4.069304 TGTGTACCACAAATAAGAGTGCC 58.931 43.478 0.00 0.00 41.69 5.01
417 419 8.283992 TCAAAACGTGTCATAATATTTCGTTGT 58.716 29.630 0.00 0.00 39.36 3.32
437 439 8.661352 TTTCATTGATTCCCTTCTTTCAAAAC 57.339 30.769 0.00 0.00 32.35 2.43
450 452 2.914838 GCCGAACGTTTTCATTGATTCC 59.085 45.455 0.46 0.00 0.00 3.01
451 453 2.588106 CGCCGAACGTTTTCATTGATTC 59.412 45.455 0.46 0.00 36.87 2.52
570 605 6.340522 CGGCAAGGATGGAAATAATTTCTTT 58.659 36.000 0.00 0.00 39.59 2.52
707 1201 2.495669 TGCGTTGTGATCTAGTGGATGA 59.504 45.455 0.00 0.00 34.33 2.92
723 1217 7.065803 AGCTTTCGCCATATTATAATATGCGTT 59.934 33.333 32.47 22.16 44.33 4.84
937 1453 2.742372 GTCGTGGCTGGCGATGTT 60.742 61.111 0.00 0.00 40.59 2.71
1428 2046 2.506217 CAGCGCACCACGTCGTAT 60.506 61.111 11.47 0.00 46.11 3.06
1449 2067 4.057428 ACCGAGCACTCTGGCGTC 62.057 66.667 7.99 0.00 39.27 5.19
1491 2109 1.760613 CCGATTTGGTAGAGGCAGGTA 59.239 52.381 0.00 0.00 0.00 3.08
1534 2152 2.341543 CTGTGAGAGCGCACCAGT 59.658 61.111 11.47 0.00 37.99 4.00
1584 2202 2.211410 TCCGAACGGGAAGCTGGAA 61.211 57.895 13.29 0.00 43.62 3.53
1742 2360 3.635268 CTGAGGAACCCAGGCCTGC 62.635 68.421 28.39 13.49 33.84 4.85
1743 2361 2.673523 CTGAGGAACCCAGGCCTG 59.326 66.667 26.87 26.87 33.84 4.85
1749 2367 2.989639 CCGATGCTGAGGAACCCA 59.010 61.111 0.00 0.00 0.00 4.51
1902 2520 4.357279 AGCAGGGTGCCCTTGCTC 62.357 66.667 20.32 7.56 46.52 4.26
2274 2898 1.532868 CAGCAACTGAAGGGAACGAAG 59.467 52.381 0.00 0.00 32.44 3.79
2277 2901 1.813513 ATCAGCAACTGAAGGGAACG 58.186 50.000 0.74 0.00 44.04 3.95
2334 2958 2.628657 GGTAGGACATAGAGTGGCGATT 59.371 50.000 0.00 0.00 36.36 3.34
2426 3145 4.279671 TGAAGGCAAACGTTTTCCATATGT 59.720 37.500 27.62 7.44 0.00 2.29
2483 3202 6.092944 AGACATAACTAAGTCTCAGTCGACTG 59.907 42.308 34.76 34.76 43.14 3.51
2484 3203 6.174760 AGACATAACTAAGTCTCAGTCGACT 58.825 40.000 13.58 13.58 45.73 4.18
2485 3204 6.425577 AGACATAACTAAGTCTCAGTCGAC 57.574 41.667 7.70 7.70 40.96 4.20
2525 3244 6.761312 ACAAATCTCAATGCAAAATCCAAGA 58.239 32.000 0.00 0.00 0.00 3.02
2529 3248 7.887996 TTGTACAAATCTCAATGCAAAATCC 57.112 32.000 5.64 0.00 0.00 3.01
2534 3253 8.659925 AAAACATTGTACAAATCTCAATGCAA 57.340 26.923 13.23 0.00 46.79 4.08
2580 4660 7.275920 AGTTAAACAAGTCTCAGTCAAGTGAT 58.724 34.615 0.00 0.00 0.00 3.06
2593 4673 3.667726 GTCGACGGAGAGTTAAACAAGTC 59.332 47.826 0.00 0.00 0.00 3.01
2604 4684 0.391927 AGGTCTCAGTCGACGGAGAG 60.392 60.000 37.71 29.36 45.29 3.20
2608 4688 0.745128 AGCTAGGTCTCAGTCGACGG 60.745 60.000 10.46 10.03 34.75 4.79
2609 4689 1.593933 GTAGCTAGGTCTCAGTCGACG 59.406 57.143 10.46 5.48 34.75 5.12
2659 4739 0.673644 GGAGACATGGTCGGTTGTGG 60.674 60.000 0.00 0.00 37.67 4.17
2667 4747 5.295950 CATGATAGAACAGGAGACATGGTC 58.704 45.833 0.00 0.00 34.45 4.02
2682 4762 6.286240 ACTACACAACTCTTGCATGATAGA 57.714 37.500 2.33 0.00 0.00 1.98
2762 4842 9.233232 CAACAAGGTTTGAGTACATAAGTTTTC 57.767 33.333 0.00 0.00 0.00 2.29
2772 4852 3.064271 TGCGAACAACAAGGTTTGAGTAC 59.936 43.478 0.00 0.00 34.67 2.73
2784 4864 7.144661 AGTTTTTCATATCAATGCGAACAACA 58.855 30.769 0.00 0.00 32.76 3.33
2814 4895 8.674263 ATTATTCTCAGATCAGTTGGATGAAC 57.326 34.615 0.00 0.00 36.00 3.18
2861 4942 1.063190 TGATAGGACGGGAGACATGGT 60.063 52.381 0.00 0.00 0.00 3.55
2959 5040 6.513180 AGACGAGCATATAAATTTTCGAGGA 58.487 36.000 13.10 0.00 32.81 3.71
2960 5041 6.642950 AGAGACGAGCATATAAATTTTCGAGG 59.357 38.462 13.10 0.00 32.81 4.63
2961 5042 7.630470 AGAGACGAGCATATAAATTTTCGAG 57.370 36.000 13.10 0.00 32.81 4.04
2963 5044 7.284351 GGAAGAGACGAGCATATAAATTTTCG 58.716 38.462 0.00 0.76 0.00 3.46
2964 5045 7.284351 CGGAAGAGACGAGCATATAAATTTTC 58.716 38.462 0.00 0.00 0.00 2.29
2989 5070 1.654743 CGTAGAGAACGCGCCTAGC 60.655 63.158 5.73 0.00 46.10 3.42
3089 5209 3.514645 CTTGGAATGCAATGTTAGTGGC 58.485 45.455 0.00 0.00 0.00 5.01
3109 5229 0.601057 GGGCAATACAACCAAACGCT 59.399 50.000 0.00 0.00 0.00 5.07
3110 5230 0.315568 TGGGCAATACAACCAAACGC 59.684 50.000 0.00 0.00 0.00 4.84
3111 5231 1.668628 GCTGGGCAATACAACCAAACG 60.669 52.381 0.00 0.00 33.13 3.60
3112 5232 1.618343 AGCTGGGCAATACAACCAAAC 59.382 47.619 0.00 0.00 33.13 2.93
3113 5233 2.008242 AGCTGGGCAATACAACCAAA 57.992 45.000 0.00 0.00 33.13 3.28
3114 5234 1.617850 CAAGCTGGGCAATACAACCAA 59.382 47.619 0.00 0.00 33.13 3.67
3115 5235 1.255882 CAAGCTGGGCAATACAACCA 58.744 50.000 0.00 0.00 0.00 3.67
3116 5236 0.108662 GCAAGCTGGGCAATACAACC 60.109 55.000 5.80 0.00 0.00 3.77
3117 5237 0.108662 GGCAAGCTGGGCAATACAAC 60.109 55.000 10.38 0.00 0.00 3.32
3118 5238 1.257055 GGGCAAGCTGGGCAATACAA 61.257 55.000 17.71 0.00 34.52 2.41
3119 5239 1.682005 GGGCAAGCTGGGCAATACA 60.682 57.895 17.71 0.00 34.52 2.29
3120 5240 1.044790 ATGGGCAAGCTGGGCAATAC 61.045 55.000 17.71 0.00 34.52 1.89
3121 5241 0.555280 TATGGGCAAGCTGGGCAATA 59.445 50.000 17.71 12.60 34.52 1.90
3122 5242 0.757935 CTATGGGCAAGCTGGGCAAT 60.758 55.000 17.71 13.78 34.52 3.56
3123 5243 1.380246 CTATGGGCAAGCTGGGCAA 60.380 57.895 17.71 5.35 34.52 4.52
3124 5244 2.276409 CTATGGGCAAGCTGGGCA 59.724 61.111 17.71 3.04 34.52 5.36
3125 5245 3.222121 GCTATGGGCAAGCTGGGC 61.222 66.667 5.99 5.99 41.35 5.36
3156 5276 1.957877 AGCCTAACCGAGCTAAGCTAG 59.042 52.381 0.00 0.00 39.88 3.42
3157 5277 2.068834 AGCCTAACCGAGCTAAGCTA 57.931 50.000 0.00 0.00 39.88 3.32
3158 5278 1.682323 GTAGCCTAACCGAGCTAAGCT 59.318 52.381 0.00 0.00 42.92 3.74
3159 5279 1.269673 GGTAGCCTAACCGAGCTAAGC 60.270 57.143 0.00 0.00 42.92 3.09
3160 5280 2.308690 AGGTAGCCTAACCGAGCTAAG 58.691 52.381 0.00 0.00 42.92 2.18
3161 5281 2.449137 AGGTAGCCTAACCGAGCTAA 57.551 50.000 0.00 0.00 42.92 3.09
3162 5282 2.429610 CAAAGGTAGCCTAACCGAGCTA 59.570 50.000 0.00 0.00 44.77 3.32
3163 5283 1.207329 CAAAGGTAGCCTAACCGAGCT 59.793 52.381 0.00 0.00 44.77 4.09
3164 5284 1.653151 CAAAGGTAGCCTAACCGAGC 58.347 55.000 0.00 0.00 44.77 5.03
3165 5285 1.653151 GCAAAGGTAGCCTAACCGAG 58.347 55.000 0.00 0.00 44.77 4.63
3166 5286 3.846955 GCAAAGGTAGCCTAACCGA 57.153 52.632 0.00 0.00 44.77 4.69
3174 5294 0.735471 GCAGCTAAGGCAAAGGTAGC 59.265 55.000 0.00 0.00 41.70 3.58
3175 5295 1.740025 GTGCAGCTAAGGCAAAGGTAG 59.260 52.381 0.00 0.00 43.91 3.18
3176 5296 1.821216 GTGCAGCTAAGGCAAAGGTA 58.179 50.000 0.00 0.00 43.91 3.08
3177 5297 1.237285 CGTGCAGCTAAGGCAAAGGT 61.237 55.000 0.00 0.00 43.91 3.50
3178 5298 1.237285 ACGTGCAGCTAAGGCAAAGG 61.237 55.000 0.00 0.00 43.91 3.11
3179 5299 0.593128 AACGTGCAGCTAAGGCAAAG 59.407 50.000 0.00 0.00 43.91 2.77
3180 5300 1.028905 AAACGTGCAGCTAAGGCAAA 58.971 45.000 0.00 0.00 43.91 3.68
3181 5301 0.310543 CAAACGTGCAGCTAAGGCAA 59.689 50.000 0.00 0.00 43.91 4.52
3182 5302 1.514678 CCAAACGTGCAGCTAAGGCA 61.515 55.000 0.00 0.00 41.70 4.75
3183 5303 1.210155 CCAAACGTGCAGCTAAGGC 59.790 57.895 0.00 0.00 39.06 4.35
3184 5304 0.951558 AACCAAACGTGCAGCTAAGG 59.048 50.000 0.00 0.00 0.00 2.69
3185 5305 1.601903 TGAACCAAACGTGCAGCTAAG 59.398 47.619 0.00 0.00 0.00 2.18
3186 5306 1.669604 TGAACCAAACGTGCAGCTAA 58.330 45.000 0.00 0.00 0.00 3.09
3187 5307 1.669604 TTGAACCAAACGTGCAGCTA 58.330 45.000 0.00 0.00 29.06 3.32
3188 5308 1.032014 ATTGAACCAAACGTGCAGCT 58.968 45.000 0.00 0.00 29.06 4.24
3189 5309 1.130955 CATTGAACCAAACGTGCAGC 58.869 50.000 0.00 0.00 29.06 5.25
3190 5310 1.130955 GCATTGAACCAAACGTGCAG 58.869 50.000 0.00 0.00 29.06 4.41
3191 5311 0.249238 GGCATTGAACCAAACGTGCA 60.249 50.000 0.00 0.00 34.45 4.57
3192 5312 0.943835 GGGCATTGAACCAAACGTGC 60.944 55.000 0.00 0.00 0.00 5.34
3193 5313 0.673437 AGGGCATTGAACCAAACGTG 59.327 50.000 0.00 0.00 0.00 4.49
3194 5314 1.068434 CAAGGGCATTGAACCAAACGT 59.932 47.619 5.89 0.00 41.83 3.99
3195 5315 1.782044 CAAGGGCATTGAACCAAACG 58.218 50.000 5.89 0.00 41.83 3.60
3196 5316 1.070601 AGCAAGGGCATTGAACCAAAC 59.929 47.619 17.10 0.00 44.61 2.93
3197 5317 1.422531 AGCAAGGGCATTGAACCAAA 58.577 45.000 17.10 0.00 44.61 3.28
3198 5318 2.170166 CTAGCAAGGGCATTGAACCAA 58.830 47.619 17.10 0.00 44.61 3.67
3199 5319 1.838112 CTAGCAAGGGCATTGAACCA 58.162 50.000 17.10 0.00 44.61 3.67
3200 5320 0.457443 GCTAGCAAGGGCATTGAACC 59.543 55.000 17.10 0.00 44.61 3.62
3201 5321 1.176527 TGCTAGCAAGGGCATTGAAC 58.823 50.000 16.84 0.00 44.61 3.18
3202 5322 1.545582 GTTGCTAGCAAGGGCATTGAA 59.454 47.619 29.99 1.96 44.61 2.69
3203 5323 1.176527 GTTGCTAGCAAGGGCATTGA 58.823 50.000 29.99 2.79 44.61 2.57
3204 5324 0.889994 TGTTGCTAGCAAGGGCATTG 59.110 50.000 29.99 7.66 44.61 2.82
3205 5325 1.180029 CTGTTGCTAGCAAGGGCATT 58.820 50.000 29.99 0.00 44.61 3.56
3206 5326 1.318158 GCTGTTGCTAGCAAGGGCAT 61.318 55.000 32.10 0.00 43.17 4.40
3207 5327 1.973281 GCTGTTGCTAGCAAGGGCA 60.973 57.895 32.10 24.94 43.17 5.36
3208 5328 2.704808 GGCTGTTGCTAGCAAGGGC 61.705 63.158 30.60 30.60 45.46 5.19
3209 5329 0.682209 ATGGCTGTTGCTAGCAAGGG 60.682 55.000 29.99 23.75 45.46 3.95
3210 5330 0.737219 GATGGCTGTTGCTAGCAAGG 59.263 55.000 29.99 24.08 45.46 3.61
3211 5331 1.400846 CTGATGGCTGTTGCTAGCAAG 59.599 52.381 29.99 20.19 44.88 4.01
3212 5332 1.456296 CTGATGGCTGTTGCTAGCAA 58.544 50.000 26.06 26.06 44.88 3.91
3213 5333 1.028330 GCTGATGGCTGTTGCTAGCA 61.028 55.000 14.93 14.93 43.48 3.49
3214 5334 1.726265 GCTGATGGCTGTTGCTAGC 59.274 57.895 8.10 8.10 42.94 3.42
3224 5344 1.009829 CCAAACGACTAGCTGATGGC 58.990 55.000 0.00 0.00 42.19 4.40
3225 5345 2.386661 ACCAAACGACTAGCTGATGG 57.613 50.000 0.00 0.29 0.00 3.51
3226 5346 3.067106 ACAACCAAACGACTAGCTGATG 58.933 45.455 0.00 0.00 0.00 3.07
3227 5347 3.067106 CACAACCAAACGACTAGCTGAT 58.933 45.455 0.00 0.00 0.00 2.90
3228 5348 2.479837 CACAACCAAACGACTAGCTGA 58.520 47.619 0.00 0.00 0.00 4.26
3229 5349 1.069906 GCACAACCAAACGACTAGCTG 60.070 52.381 0.00 0.00 0.00 4.24
3230 5350 1.202651 AGCACAACCAAACGACTAGCT 60.203 47.619 0.00 0.00 0.00 3.32
3231 5351 1.069906 CAGCACAACCAAACGACTAGC 60.070 52.381 0.00 0.00 0.00 3.42
3232 5352 1.069906 GCAGCACAACCAAACGACTAG 60.070 52.381 0.00 0.00 0.00 2.57
3233 5353 0.941542 GCAGCACAACCAAACGACTA 59.058 50.000 0.00 0.00 0.00 2.59
3234 5354 1.727467 GCAGCACAACCAAACGACT 59.273 52.632 0.00 0.00 0.00 4.18
3235 5355 1.654137 CGCAGCACAACCAAACGAC 60.654 57.895 0.00 0.00 0.00 4.34
3236 5356 2.712539 CGCAGCACAACCAAACGA 59.287 55.556 0.00 0.00 0.00 3.85
3237 5357 2.353376 CCGCAGCACAACCAAACG 60.353 61.111 0.00 0.00 0.00 3.60
3238 5358 2.027460 CCCGCAGCACAACCAAAC 59.973 61.111 0.00 0.00 0.00 2.93
3239 5359 3.910490 GCCCGCAGCACAACCAAA 61.910 61.111 0.00 0.00 42.97 3.28
3248 5368 4.785453 AGCTACCTTGCCCGCAGC 62.785 66.667 0.00 0.00 44.14 5.25
3249 5369 2.512515 GAGCTACCTTGCCCGCAG 60.513 66.667 0.00 0.00 0.00 5.18
3250 5370 4.451150 CGAGCTACCTTGCCCGCA 62.451 66.667 0.00 0.00 0.00 5.69
3251 5371 3.952628 AACGAGCTACCTTGCCCGC 62.953 63.158 0.00 0.00 37.70 6.13
3252 5372 0.953960 AAAACGAGCTACCTTGCCCG 60.954 55.000 0.00 0.00 40.00 6.13
3253 5373 0.803117 GAAAACGAGCTACCTTGCCC 59.197 55.000 0.00 0.00 0.00 5.36
3254 5374 1.197036 GTGAAAACGAGCTACCTTGCC 59.803 52.381 0.00 0.00 0.00 4.52
3255 5375 1.871039 TGTGAAAACGAGCTACCTTGC 59.129 47.619 0.00 0.00 0.00 4.01
3256 5376 3.131396 ACTGTGAAAACGAGCTACCTTG 58.869 45.455 0.00 0.00 0.00 3.61
3257 5377 3.470645 ACTGTGAAAACGAGCTACCTT 57.529 42.857 0.00 0.00 0.00 3.50
3258 5378 4.381718 GGATACTGTGAAAACGAGCTACCT 60.382 45.833 0.00 0.00 0.00 3.08
3259 5379 3.864003 GGATACTGTGAAAACGAGCTACC 59.136 47.826 0.00 0.00 0.00 3.18
3260 5380 4.491676 TGGATACTGTGAAAACGAGCTAC 58.508 43.478 0.00 0.00 37.61 3.58
3261 5381 4.794278 TGGATACTGTGAAAACGAGCTA 57.206 40.909 0.00 0.00 37.61 3.32
3262 5382 3.678056 TGGATACTGTGAAAACGAGCT 57.322 42.857 0.00 0.00 37.61 4.09
3263 5383 4.742438 TTTGGATACTGTGAAAACGAGC 57.258 40.909 0.00 0.00 37.61 5.03
3264 5384 7.359262 TGTATTTGGATACTGTGAAAACGAG 57.641 36.000 0.00 0.00 39.12 4.18
3265 5385 7.442969 ACTTGTATTTGGATACTGTGAAAACGA 59.557 33.333 0.00 0.00 39.12 3.85
3266 5386 7.581476 ACTTGTATTTGGATACTGTGAAAACG 58.419 34.615 0.00 0.00 39.12 3.60
3268 5388 8.726988 GCTACTTGTATTTGGATACTGTGAAAA 58.273 33.333 0.00 0.00 39.12 2.29
3269 5389 8.100791 AGCTACTTGTATTTGGATACTGTGAAA 58.899 33.333 0.00 0.00 39.12 2.69
3270 5390 7.620880 AGCTACTTGTATTTGGATACTGTGAA 58.379 34.615 0.00 0.00 39.12 3.18
3271 5391 7.182817 AGCTACTTGTATTTGGATACTGTGA 57.817 36.000 0.00 0.00 39.12 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.