Multiple sequence alignment - TraesCS7D01G223000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G223000 chr7D 100.000 7231 0 0 1 7231 184188716 184195946 0.000000e+00 13354.0
1 TraesCS7D01G223000 chr7B 96.729 7032 173 33 3 7009 153439751 153446750 0.000000e+00 11659.0
2 TraesCS7D01G223000 chr7B 96.250 80 3 0 7152 7231 153446884 153446963 1.640000e-26 132.0
3 TraesCS7D01G223000 chr7B 96.825 63 1 1 5928 5989 717614943 717614881 3.570000e-18 104.0
4 TraesCS7D01G223000 chr7A 96.427 4730 120 28 2286 6987 186527685 186522977 0.000000e+00 7753.0
5 TraesCS7D01G223000 chr7A 95.296 2296 62 23 3 2293 186529980 186527726 0.000000e+00 3600.0
6 TraesCS7D01G223000 chr7A 98.750 80 1 0 7152 7231 186522867 186522788 7.560000e-30 143.0
7 TraesCS7D01G223000 chr5A 97.619 42 1 0 7156 7197 139934777 139934736 1.010000e-08 73.1
8 TraesCS7D01G223000 chr4B 97.619 42 1 0 7153 7194 327520108 327520149 1.010000e-08 73.1
9 TraesCS7D01G223000 chr3A 97.619 42 1 0 7153 7194 462326728 462326769 1.010000e-08 73.1
10 TraesCS7D01G223000 chr1A 97.619 42 1 0 7156 7197 188135688 188135647 1.010000e-08 73.1
11 TraesCS7D01G223000 chr2D 93.750 48 2 1 7153 7200 242327400 242327446 3.620000e-08 71.3
12 TraesCS7D01G223000 chr6D 93.333 45 3 0 7153 7197 87119935 87119979 4.680000e-07 67.6
13 TraesCS7D01G223000 chr6D 97.436 39 1 0 7153 7191 200872165 200872203 4.680000e-07 67.6
14 TraesCS7D01G223000 chr6D 100.000 35 0 0 7197 7231 429502681 429502647 1.680000e-06 65.8
15 TraesCS7D01G223000 chr2B 87.500 48 4 2 7185 7231 339114454 339114500 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G223000 chr7D 184188716 184195946 7230 False 13354.0 13354 100.000000 1 7231 1 chr7D.!!$F1 7230
1 TraesCS7D01G223000 chr7B 153439751 153446963 7212 False 5895.5 11659 96.489500 3 7231 2 chr7B.!!$F1 7228
2 TraesCS7D01G223000 chr7A 186522788 186529980 7192 True 3832.0 7753 96.824333 3 7231 3 chr7A.!!$R1 7228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 2.867109 AACTGTGAGCTATGGTGCTT 57.133 45.000 0.00 0.0 44.17 3.91 F
165 166 3.719871 ACTGAACCCTTCCTTGGTTTTT 58.280 40.909 0.00 0.0 45.93 1.94 F
1014 1020 1.600058 AGATCATGGGCTGGGAGAAA 58.400 50.000 0.00 0.0 0.00 2.52 F
1987 1997 0.388907 CATGTTTTGCCTTGCTCGGG 60.389 55.000 0.00 0.0 0.00 5.14 F
2670 2729 3.136443 TCATTGGCCGATATCCTTTGTCT 59.864 43.478 4.75 0.0 0.00 3.41 F
4020 4084 2.203788 TTGGGCCTCGAGGTCAGT 60.204 61.111 35.49 0.0 42.93 3.41 F
5649 5724 0.394899 GCCCAGCTGCCAAGTATCTT 60.395 55.000 8.66 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1020 0.111253 CAACTTGCTCCAGGGAGGTT 59.889 55.000 16.70 9.53 42.19 3.50 R
1967 1977 0.597568 CCGAGCAAGGCAAAACATGA 59.402 50.000 0.00 0.00 0.00 3.07 R
2670 2729 1.332375 GCCGCTAACTGTTTGTGACAA 59.668 47.619 15.33 0.00 37.93 3.18 R
3372 3431 1.030488 AGACATGCATGCCAGTCTGC 61.030 55.000 30.01 12.75 39.67 4.26 R
4087 4151 0.753262 ATTGAGTACCCTGGCTAGCG 59.247 55.000 9.00 0.00 0.00 4.26 R
5654 5729 1.002134 CCGGGCTTCACAGAATGGT 60.002 57.895 0.00 0.00 43.62 3.55 R
7060 7147 0.179132 TGTTGCTGTTGCTGTTGCTG 60.179 50.000 0.00 0.00 40.48 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.867109 AACTGTGAGCTATGGTGCTT 57.133 45.000 0.00 0.00 44.17 3.91
139 140 8.181573 TGTCAAACACTGAACTTCTAAAATCAC 58.818 33.333 0.00 0.00 35.22 3.06
165 166 3.719871 ACTGAACCCTTCCTTGGTTTTT 58.280 40.909 0.00 0.00 45.93 1.94
352 355 7.322664 TGAAAATTTGCAGTTTCTCAGTCTTT 58.677 30.769 16.06 0.00 37.77 2.52
417 420 5.194942 ACCCTAAATATTGTGGGAAGGCTTA 59.805 40.000 24.64 0.00 42.11 3.09
457 460 7.418378 TCCAAGGGTTACCAATAATCTGAAAT 58.582 34.615 2.98 0.00 40.13 2.17
589 594 7.639113 TTGTCTTTTCACTTTTACACAGGAT 57.361 32.000 0.00 0.00 0.00 3.24
859 865 4.216257 TGTCAAAGCTGCATTTAGGAACTC 59.784 41.667 1.02 0.00 41.75 3.01
951 957 3.994392 GTGTTCTTCTTGAATCTGCGGTA 59.006 43.478 0.00 0.00 36.99 4.02
1014 1020 1.600058 AGATCATGGGCTGGGAGAAA 58.400 50.000 0.00 0.00 0.00 2.52
1340 1350 6.663944 ATACAGTTCCGTATTTCTGCTTTC 57.336 37.500 0.00 0.00 0.00 2.62
1654 1664 4.043596 ACAGAGATGGCCTTCTTTATCCT 58.956 43.478 21.27 11.08 0.00 3.24
1761 1771 2.401967 CAGCTATGCTTGGTCAGGC 58.598 57.895 0.00 0.00 36.40 4.85
1783 1793 4.312443 CACATGCTCAAATTCTTTTGGCT 58.688 39.130 0.00 0.00 42.10 4.75
1856 1866 3.708563 TTTGCCTGTTTCTTGTGCTAC 57.291 42.857 0.00 0.00 0.00 3.58
1886 1896 3.791973 TTGAAACAATTTGTCGCAGGT 57.208 38.095 1.83 0.00 0.00 4.00
1967 1977 1.119684 GGTGCAAGGACCCTGTTTTT 58.880 50.000 0.00 0.00 0.00 1.94
1985 1995 2.420628 TTCATGTTTTGCCTTGCTCG 57.579 45.000 0.00 0.00 0.00 5.03
1987 1997 0.388907 CATGTTTTGCCTTGCTCGGG 60.389 55.000 0.00 0.00 0.00 5.14
2065 2075 3.941483 GCATGATTGTTACTACAGCAGGT 59.059 43.478 0.00 0.00 35.28 4.00
2176 2187 3.583966 ACATGGTGGCCATTTGATTCTTT 59.416 39.130 9.72 0.00 42.23 2.52
2193 2204 5.376854 TTCTTTGCAAAGATAGTGCCTTC 57.623 39.130 35.66 0.00 43.92 3.46
2269 2280 4.842531 TTATTTGATCAGGAGCACAGGA 57.157 40.909 0.00 0.00 0.00 3.86
2376 2435 4.695396 TGCTGCAGTTTTGATGAACATTT 58.305 34.783 16.64 0.00 31.94 2.32
2377 2436 5.117584 TGCTGCAGTTTTGATGAACATTTT 58.882 33.333 16.64 0.00 31.94 1.82
2438 2497 7.108847 ACATGAGAACAAAATTTTCCCACAAA 58.891 30.769 0.00 0.00 0.00 2.83
2575 2634 4.281941 ACAGCAACTGATCTAGTTCTCACA 59.718 41.667 0.78 0.00 46.55 3.58
2656 2715 8.515414 GGTATTTTATTGTCTAGATCATTGGCC 58.485 37.037 0.00 0.00 0.00 5.36
2670 2729 3.136443 TCATTGGCCGATATCCTTTGTCT 59.864 43.478 4.75 0.00 0.00 3.41
2920 2979 9.844790 TCTTTCAAAATGACTTTGCTACATATG 57.155 29.630 0.00 0.00 43.60 1.78
2958 3017 4.512571 GCAGATGCTGTTTGGAACAAAAAT 59.487 37.500 0.00 0.00 41.61 1.82
2992 3051 6.770286 ATATCCATGTCCTGATGGTTAACT 57.230 37.500 5.42 0.00 43.20 2.24
3001 3060 8.934023 TGTCCTGATGGTTAACTTAATTTCTT 57.066 30.769 5.42 0.00 34.23 2.52
3213 3272 8.648097 CCTAAAATAGAACCGACATATTCATCG 58.352 37.037 0.00 0.00 38.08 3.84
3278 3337 4.102054 TGGTCCGAAGAGGTAATTTATCCC 59.898 45.833 0.00 0.00 41.99 3.85
3284 3343 7.451255 TCCGAAGAGGTAATTTATCCCGTTATA 59.549 37.037 0.00 0.00 41.99 0.98
3315 3374 8.867097 GGTATACTTCCATTCTCTTACATGGTA 58.133 37.037 2.25 0.00 40.90 3.25
3372 3431 5.120830 CGAGTCACCTTAAAAGACATGAAGG 59.879 44.000 0.00 3.12 43.49 3.46
3418 3477 6.875948 AAATAAAATTGGTTTCAAGGTGCC 57.124 33.333 0.00 0.00 36.19 5.01
3709 3773 5.419788 TGCTCATTTTCCAATAGCTTCATGT 59.580 36.000 0.00 0.00 34.28 3.21
3801 3865 7.775053 ACTATTCTCTTGAGAAGACAGAAGT 57.225 36.000 16.66 10.44 33.12 3.01
3887 3951 4.100653 TGTGAAGTTTGATTTTCATGGGCA 59.899 37.500 0.00 0.00 35.91 5.36
4020 4084 2.203788 TTGGGCCTCGAGGTCAGT 60.204 61.111 35.49 0.00 42.93 3.41
4031 4095 5.105997 GCCTCGAGGTCAGTACTTAGTTAAA 60.106 44.000 31.43 0.00 37.57 1.52
4087 4151 3.425162 TCTTCCTTCTCTGCCCTTTTC 57.575 47.619 0.00 0.00 0.00 2.29
4157 4221 5.304101 ACCATGGATTAAAACAAGTCTTGCA 59.696 36.000 21.47 0.46 0.00 4.08
4200 4264 7.394144 ACCAAATATCTGCTTAGGAGGTATT 57.606 36.000 12.52 12.52 29.54 1.89
4240 4304 5.927281 ATTCATCATATGCCCCTTATTGC 57.073 39.130 0.00 0.00 0.00 3.56
4337 4405 5.284861 TCAGTGGTTTGCTGAAGTACTTA 57.715 39.130 8.42 0.00 39.70 2.24
4379 4447 3.721021 AGTTGGGTATGGCTGTACTACT 58.279 45.455 0.00 0.00 0.00 2.57
4423 4491 3.409851 TGATCAAATCGTTGCAGATGC 57.590 42.857 0.00 0.00 42.50 3.91
4958 5027 0.761187 GGACATCTGGCCATCTAGCA 59.239 55.000 5.51 0.00 44.76 3.49
4961 5030 2.103771 GACATCTGGCCATCTAGCAAGA 59.896 50.000 5.51 0.00 46.76 3.02
5077 5146 7.755591 TGCTCAAACTAGATTCAATTTAGCAG 58.244 34.615 0.00 0.00 31.92 4.24
5179 5248 9.191479 GGTGCTACCCTGGCTATATATATATAG 57.809 40.741 26.01 26.01 37.98 1.31
5217 5286 8.506168 AATACCACAAATATCCTAACACACAG 57.494 34.615 0.00 0.00 0.00 3.66
5280 5355 2.269241 GGTACTGCCCTCACTGCC 59.731 66.667 0.00 0.00 0.00 4.85
5283 5358 1.079256 TACTGCCCTCACTGCCTCT 59.921 57.895 0.00 0.00 0.00 3.69
5306 5381 6.421501 TCTTAACACAAACGACGTACATGAAT 59.578 34.615 0.00 0.00 0.00 2.57
5405 5480 9.109393 TGATATGTTCAAAAGTACTTATGAGGC 57.891 33.333 8.92 0.00 0.00 4.70
5451 5526 3.199290 CCAACTGGTGGTTCCAACA 57.801 52.632 9.33 9.33 46.59 3.33
5569 5644 1.352352 AGGATGCCTACTGCTTGTTGT 59.648 47.619 0.00 0.00 42.00 3.32
5589 5664 2.032924 GTGCTTTGGTGACTGTGTAACC 59.967 50.000 0.00 0.00 37.57 2.85
5649 5724 0.394899 GCCCAGCTGCCAAGTATCTT 60.395 55.000 8.66 0.00 0.00 2.40
5654 5729 3.076621 CAGCTGCCAAGTATCTTGTTGA 58.923 45.455 0.00 0.00 0.00 3.18
5669 5744 2.229792 TGTTGACCATTCTGTGAAGCC 58.770 47.619 0.00 0.00 0.00 4.35
5671 5746 0.321564 TGACCATTCTGTGAAGCCCG 60.322 55.000 0.00 0.00 0.00 6.13
5794 5869 3.181480 ACCTGGACCAAAAACAATTCACG 60.181 43.478 0.00 0.00 0.00 4.35
5940 6016 3.715628 TCTCCTGCTGCAAAAGTTTTC 57.284 42.857 3.02 0.00 0.00 2.29
5994 6070 6.074005 GTGCTACTCATGTTTCTTCTTTTCG 58.926 40.000 0.00 0.00 0.00 3.46
6007 6083 6.903883 TCTTCTTTTCGCCATACTATTGAC 57.096 37.500 0.00 0.00 0.00 3.18
6094 6170 1.177401 GAGGGACTGGGATGCAAAAC 58.823 55.000 0.00 0.00 41.55 2.43
6122 6198 9.450807 CACTATGTTGCTGGTAAATATTTTAGC 57.549 33.333 17.76 17.76 0.00 3.09
6179 6255 4.508551 AGGCTCATGGAATAATGTGTCA 57.491 40.909 0.00 0.00 0.00 3.58
6228 6304 5.783111 CCAAAAGTTCCGAAAGAATCCATT 58.217 37.500 0.00 0.00 36.69 3.16
6254 6330 3.352648 CAATTTAGTCGGGATGGGTGTT 58.647 45.455 0.00 0.00 0.00 3.32
6985 7072 6.908825 TGTGTGAGAAATTATGCTAACAACC 58.091 36.000 0.00 0.00 27.61 3.77
6986 7073 6.488344 TGTGTGAGAAATTATGCTAACAACCA 59.512 34.615 0.00 0.00 27.61 3.67
6987 7074 7.013750 TGTGTGAGAAATTATGCTAACAACCAA 59.986 33.333 0.00 0.00 27.61 3.67
6988 7075 7.326063 GTGTGAGAAATTATGCTAACAACCAAC 59.674 37.037 0.00 0.00 27.61 3.77
6989 7076 7.013750 TGTGAGAAATTATGCTAACAACCAACA 59.986 33.333 0.00 0.00 0.00 3.33
6990 7077 7.865385 GTGAGAAATTATGCTAACAACCAACAA 59.135 33.333 0.00 0.00 0.00 2.83
6991 7078 7.865385 TGAGAAATTATGCTAACAACCAACAAC 59.135 33.333 0.00 0.00 0.00 3.32
6992 7079 7.151976 AGAAATTATGCTAACAACCAACAACC 58.848 34.615 0.00 0.00 0.00 3.77
6993 7080 6.412362 AATTATGCTAACAACCAACAACCA 57.588 33.333 0.00 0.00 0.00 3.67
6994 7081 3.726291 ATGCTAACAACCAACAACCAC 57.274 42.857 0.00 0.00 0.00 4.16
6995 7082 2.447443 TGCTAACAACCAACAACCACA 58.553 42.857 0.00 0.00 0.00 4.17
6996 7083 2.826128 TGCTAACAACCAACAACCACAA 59.174 40.909 0.00 0.00 0.00 3.33
6997 7084 3.119316 TGCTAACAACCAACAACCACAAG 60.119 43.478 0.00 0.00 0.00 3.16
6998 7085 3.129638 GCTAACAACCAACAACCACAAGA 59.870 43.478 0.00 0.00 0.00 3.02
6999 7086 4.381079 GCTAACAACCAACAACCACAAGAA 60.381 41.667 0.00 0.00 0.00 2.52
7000 7087 3.586100 ACAACCAACAACCACAAGAAC 57.414 42.857 0.00 0.00 0.00 3.01
7001 7088 2.894126 ACAACCAACAACCACAAGAACA 59.106 40.909 0.00 0.00 0.00 3.18
7002 7089 3.322254 ACAACCAACAACCACAAGAACAA 59.678 39.130 0.00 0.00 0.00 2.83
7003 7090 3.586100 ACCAACAACCACAAGAACAAC 57.414 42.857 0.00 0.00 0.00 3.32
7004 7091 2.894126 ACCAACAACCACAAGAACAACA 59.106 40.909 0.00 0.00 0.00 3.33
7005 7092 3.322254 ACCAACAACCACAAGAACAACAA 59.678 39.130 0.00 0.00 0.00 2.83
7006 7093 3.677596 CCAACAACCACAAGAACAACAAC 59.322 43.478 0.00 0.00 0.00 3.32
7007 7094 4.302455 CAACAACCACAAGAACAACAACA 58.698 39.130 0.00 0.00 0.00 3.33
7008 7095 4.592485 ACAACCACAAGAACAACAACAA 57.408 36.364 0.00 0.00 0.00 2.83
7009 7096 4.303282 ACAACCACAAGAACAACAACAAC 58.697 39.130 0.00 0.00 0.00 3.32
7010 7097 4.202161 ACAACCACAAGAACAACAACAACA 60.202 37.500 0.00 0.00 0.00 3.33
7011 7098 4.592485 ACCACAAGAACAACAACAACAA 57.408 36.364 0.00 0.00 0.00 2.83
7012 7099 4.303282 ACCACAAGAACAACAACAACAAC 58.697 39.130 0.00 0.00 0.00 3.32
7013 7100 4.202161 ACCACAAGAACAACAACAACAACA 60.202 37.500 0.00 0.00 0.00 3.33
7014 7101 4.747108 CCACAAGAACAACAACAACAACAA 59.253 37.500 0.00 0.00 0.00 2.83
7015 7102 5.332959 CCACAAGAACAACAACAACAACAAC 60.333 40.000 0.00 0.00 0.00 3.32
7016 7103 5.233050 CACAAGAACAACAACAACAACAACA 59.767 36.000 0.00 0.00 0.00 3.33
7017 7104 5.812642 ACAAGAACAACAACAACAACAACAA 59.187 32.000 0.00 0.00 0.00 2.83
7043 7130 5.352284 ACAACAACAACAACAACAACAAGA 58.648 33.333 0.00 0.00 0.00 3.02
7044 7131 5.812642 ACAACAACAACAACAACAACAAGAA 59.187 32.000 0.00 0.00 0.00 2.52
7046 7133 5.352284 ACAACAACAACAACAACAAGAACA 58.648 33.333 0.00 0.00 0.00 3.18
7048 7135 5.898630 ACAACAACAACAACAAGAACAAC 57.101 34.783 0.00 0.00 0.00 3.32
7049 7136 5.352284 ACAACAACAACAACAAGAACAACA 58.648 33.333 0.00 0.00 0.00 3.33
7050 7137 5.812642 ACAACAACAACAACAAGAACAACAA 59.187 32.000 0.00 0.00 0.00 2.83
7053 7140 5.812642 ACAACAACAACAAGAACAACAACAA 59.187 32.000 0.00 0.00 0.00 2.83
7054 7141 6.019156 ACAACAACAACAAGAACAACAACAAG 60.019 34.615 0.00 0.00 0.00 3.16
7060 7147 6.200097 ACAACAAGAACAACAACAAGAACAAC 59.800 34.615 0.00 0.00 0.00 3.32
7061 7148 5.837437 ACAAGAACAACAACAAGAACAACA 58.163 33.333 0.00 0.00 0.00 3.33
7062 7149 5.920273 ACAAGAACAACAACAAGAACAACAG 59.080 36.000 0.00 0.00 0.00 3.16
7063 7150 4.485163 AGAACAACAACAAGAACAACAGC 58.515 39.130 0.00 0.00 0.00 4.40
7064 7151 3.932545 ACAACAACAAGAACAACAGCA 57.067 38.095 0.00 0.00 0.00 4.41
7065 7152 4.250116 ACAACAACAAGAACAACAGCAA 57.750 36.364 0.00 0.00 0.00 3.91
7066 7153 3.987220 ACAACAACAAGAACAACAGCAAC 59.013 39.130 0.00 0.00 0.00 4.17
7067 7154 3.932545 ACAACAAGAACAACAGCAACA 57.067 38.095 0.00 0.00 0.00 3.33
7072 7159 2.566952 AGAACAACAGCAACAGCAAC 57.433 45.000 0.00 0.00 0.00 4.17
7073 7160 1.818060 AGAACAACAGCAACAGCAACA 59.182 42.857 0.00 0.00 0.00 3.33
7074 7161 2.159338 AGAACAACAGCAACAGCAACAG 60.159 45.455 0.00 0.00 0.00 3.16
7075 7162 0.179129 ACAACAGCAACAGCAACAGC 60.179 50.000 0.00 0.00 0.00 4.40
7078 7165 0.179129 ACAGCAACAGCAACAGCAAC 60.179 50.000 0.00 0.00 0.00 4.17
7080 7167 0.531657 AGCAACAGCAACAGCAACAA 59.468 45.000 0.00 0.00 0.00 2.83
7081 7168 0.646895 GCAACAGCAACAGCAACAAC 59.353 50.000 0.00 0.00 0.00 3.32
7082 7169 1.993542 CAACAGCAACAGCAACAACA 58.006 45.000 0.00 0.00 0.00 3.33
7083 7170 2.335752 CAACAGCAACAGCAACAACAA 58.664 42.857 0.00 0.00 0.00 2.83
7084 7171 1.994916 ACAGCAACAGCAACAACAAC 58.005 45.000 0.00 0.00 0.00 3.32
7086 7173 0.894141 AGCAACAGCAACAACAACCA 59.106 45.000 0.00 0.00 0.00 3.67
7087 7174 0.998669 GCAACAGCAACAACAACCAC 59.001 50.000 0.00 0.00 0.00 4.16
7091 7178 1.615883 ACAGCAACAACAACCACAACA 59.384 42.857 0.00 0.00 0.00 3.33
7092 7179 2.036475 ACAGCAACAACAACCACAACAA 59.964 40.909 0.00 0.00 0.00 2.83
7093 7180 2.411409 CAGCAACAACAACCACAACAAC 59.589 45.455 0.00 0.00 0.00 3.32
7094 7181 1.729517 GCAACAACAACCACAACAACC 59.270 47.619 0.00 0.00 0.00 3.77
7095 7182 2.868044 GCAACAACAACCACAACAACCA 60.868 45.455 0.00 0.00 0.00 3.67
7097 7184 1.273886 ACAACAACCACAACAACCACC 59.726 47.619 0.00 0.00 0.00 4.61
7098 7185 1.273606 CAACAACCACAACAACCACCA 59.726 47.619 0.00 0.00 0.00 4.17
7099 7186 0.892063 ACAACCACAACAACCACCAC 59.108 50.000 0.00 0.00 0.00 4.16
7100 7187 0.891373 CAACCACAACAACCACCACA 59.109 50.000 0.00 0.00 0.00 4.17
7101 7188 1.273606 CAACCACAACAACCACCACAA 59.726 47.619 0.00 0.00 0.00 3.33
7102 7189 0.892063 ACCACAACAACCACCACAAC 59.108 50.000 0.00 0.00 0.00 3.32
7103 7190 0.891373 CCACAACAACCACCACAACA 59.109 50.000 0.00 0.00 0.00 3.33
7104 7191 1.273606 CCACAACAACCACCACAACAA 59.726 47.619 0.00 0.00 0.00 2.83
7105 7192 2.333014 CACAACAACCACCACAACAAC 58.667 47.619 0.00 0.00 0.00 3.32
7106 7193 1.273886 ACAACAACCACCACAACAACC 59.726 47.619 0.00 0.00 0.00 3.77
7107 7194 1.273606 CAACAACCACCACAACAACCA 59.726 47.619 0.00 0.00 0.00 3.67
7108 7195 0.892063 ACAACCACCACAACAACCAC 59.108 50.000 0.00 0.00 0.00 4.16
7110 7197 0.251832 AACCACCACAACAACCACCA 60.252 50.000 0.00 0.00 0.00 4.17
7111 7198 0.968393 ACCACCACAACAACCACCAC 60.968 55.000 0.00 0.00 0.00 4.16
7112 7199 1.671901 CCACCACAACAACCACCACC 61.672 60.000 0.00 0.00 0.00 4.61
7113 7200 0.967887 CACCACAACAACCACCACCA 60.968 55.000 0.00 0.00 0.00 4.17
7114 7201 0.968393 ACCACAACAACCACCACCAC 60.968 55.000 0.00 0.00 0.00 4.16
7115 7202 1.671901 CCACAACAACCACCACCACC 61.672 60.000 0.00 0.00 0.00 4.61
7117 7204 0.968393 ACAACAACCACCACCACCAC 60.968 55.000 0.00 0.00 0.00 4.16
7119 7206 2.156496 AACAACCACCACCACCACCA 62.156 55.000 0.00 0.00 0.00 4.17
7120 7207 2.124693 CAACCACCACCACCACCAC 61.125 63.158 0.00 0.00 0.00 4.16
7121 7208 3.367907 AACCACCACCACCACCACC 62.368 63.158 0.00 0.00 0.00 4.61
7122 7209 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
7123 7210 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
7124 7211 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
7125 7212 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
7127 7214 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
7128 7215 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
7129 7216 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
7130 7217 3.018193 ACCACCACCACCACCACA 61.018 61.111 0.00 0.00 0.00 4.17
7133 7220 1.379176 CACCACCACCACCACAACA 60.379 57.895 0.00 0.00 0.00 3.33
7134 7221 0.967887 CACCACCACCACCACAACAA 60.968 55.000 0.00 0.00 0.00 2.83
7136 7223 0.967887 CCACCACCACCACAACAACA 60.968 55.000 0.00 0.00 0.00 3.33
7138 7225 0.892063 ACCACCACCACAACAACAAC 59.108 50.000 0.00 0.00 0.00 3.32
7139 7226 0.891373 CCACCACCACAACAACAACA 59.109 50.000 0.00 0.00 0.00 3.33
7140 7227 1.273606 CCACCACCACAACAACAACAA 59.726 47.619 0.00 0.00 0.00 2.83
7141 7228 2.333014 CACCACCACAACAACAACAAC 58.667 47.619 0.00 0.00 0.00 3.32
7142 7229 1.964223 ACCACCACAACAACAACAACA 59.036 42.857 0.00 0.00 0.00 3.33
7143 7230 2.365617 ACCACCACAACAACAACAACAA 59.634 40.909 0.00 0.00 0.00 2.83
7144 7231 2.734079 CCACCACAACAACAACAACAAC 59.266 45.455 0.00 0.00 0.00 3.32
7145 7232 3.384668 CACCACAACAACAACAACAACA 58.615 40.909 0.00 0.00 0.00 3.33
7146 7233 3.804325 CACCACAACAACAACAACAACAA 59.196 39.130 0.00 0.00 0.00 2.83
7147 7234 3.804873 ACCACAACAACAACAACAACAAC 59.195 39.130 0.00 0.00 0.00 3.32
7148 7235 3.804325 CCACAACAACAACAACAACAACA 59.196 39.130 0.00 0.00 0.00 3.33
7149 7236 4.271049 CCACAACAACAACAACAACAACAA 59.729 37.500 0.00 0.00 0.00 2.83
7150 7237 5.220662 CCACAACAACAACAACAACAACAAA 60.221 36.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.905126 ACGGAATTGTTGTCAAAAAGAAAATC 58.095 30.769 0.00 0.00 37.11 2.17
1 2 7.841915 ACGGAATTGTTGTCAAAAAGAAAAT 57.158 28.000 0.00 0.00 37.11 1.82
4 5 6.639671 CAACGGAATTGTTGTCAAAAAGAA 57.360 33.333 0.00 0.00 43.28 2.52
61 62 0.692476 ACCAAGCACCATAGCTCACA 59.308 50.000 0.00 0.00 45.89 3.58
77 78 3.327757 AGTTCAGAGCTTATGTTGGACCA 59.672 43.478 0.00 0.00 0.00 4.02
139 140 4.470602 ACCAAGGAAGGGTTCAGTTTAAG 58.529 43.478 0.00 0.00 34.10 1.85
417 420 0.930726 TTGGAGACCAACCACCCTTT 59.069 50.000 0.00 0.00 38.75 3.11
457 460 5.457686 AGCATTTCCCTTAGGCATGAATTA 58.542 37.500 0.00 0.00 0.00 1.40
561 566 9.150348 CCTGTGTAAAAGTGAAAAGACAAATTT 57.850 29.630 0.00 0.00 0.00 1.82
619 625 5.007039 GTGCTCTGAAATGATAATCTGCGAA 59.993 40.000 0.00 0.00 0.00 4.70
620 626 4.509230 GTGCTCTGAAATGATAATCTGCGA 59.491 41.667 0.00 0.00 0.00 5.10
859 865 9.743057 CTCTAATAAGTGATGTACTTCCTTCAG 57.257 37.037 12.57 10.06 46.55 3.02
951 957 3.374220 TGGAACTCGTCACAATTACGT 57.626 42.857 0.00 0.00 41.08 3.57
1014 1020 0.111253 CAACTTGCTCCAGGGAGGTT 59.889 55.000 16.70 9.53 42.19 3.50
1199 1205 2.276201 CCTAATTCCGACATTGCGTCA 58.724 47.619 0.00 0.00 45.70 4.35
1340 1350 2.486472 ACAAGATCTGCTGGAACCTG 57.514 50.000 0.00 0.00 0.00 4.00
1654 1664 3.184382 TCAGTCCCCAGAACACTATCA 57.816 47.619 0.00 0.00 0.00 2.15
1783 1793 3.513662 GCATATGCAAGCACATGTCAAA 58.486 40.909 22.84 0.00 41.59 2.69
1816 1826 6.425504 GCAAATATCACTCAGCATACTGTTC 58.574 40.000 0.00 0.00 44.77 3.18
1856 1866 7.214263 GCGACAAATTGTTTCAAACTGAAAAAG 59.786 33.333 0.00 0.00 46.53 2.27
1967 1977 0.597568 CCGAGCAAGGCAAAACATGA 59.402 50.000 0.00 0.00 0.00 3.07
1985 1995 8.451908 AAAAGTATGCTGATAACTGAATACCC 57.548 34.615 4.87 0.00 37.25 3.69
2176 2187 2.086869 GCTGAAGGCACTATCTTTGCA 58.913 47.619 0.00 0.00 42.12 4.08
2193 2204 6.190264 CGAACATAACATGAAGAATCAGCTG 58.810 40.000 7.63 7.63 39.39 4.24
2314 2373 2.074547 ACATGTTCCCGACAACTACG 57.925 50.000 0.00 0.00 42.62 3.51
2323 2382 4.199310 ACAGGATCATTTACATGTTCCCG 58.801 43.478 2.30 7.66 45.37 5.14
2376 2435 3.766151 CTCGGTAGTCGCTGAACATTAA 58.234 45.455 0.00 0.00 39.05 1.40
2377 2436 2.479049 GCTCGGTAGTCGCTGAACATTA 60.479 50.000 0.00 0.00 39.05 1.90
2656 2715 6.073276 TGTTTGTGACAAGACAAAGGATATCG 60.073 38.462 9.68 0.00 44.47 2.92
2670 2729 1.332375 GCCGCTAACTGTTTGTGACAA 59.668 47.619 15.33 0.00 37.93 3.18
2958 3017 7.523415 TCAGGACATGGATATACTAGTGTACA 58.477 38.462 5.39 0.00 0.00 2.90
3213 3272 6.672266 TCTCCCAGATCCAATTCTATGTAC 57.328 41.667 0.00 0.00 0.00 2.90
3278 3337 9.706691 AGAATGGAAGTATACCACAATATAACG 57.293 33.333 0.00 0.00 40.36 3.18
3284 3343 8.768397 TGTAAGAGAATGGAAGTATACCACAAT 58.232 33.333 0.00 0.00 40.36 2.71
3372 3431 1.030488 AGACATGCATGCCAGTCTGC 61.030 55.000 30.01 12.75 39.67 4.26
3418 3477 7.910162 ACAAATTTTATTTGTCCGATGATCTCG 59.090 33.333 11.01 7.37 38.10 4.04
3567 3631 4.030913 ACAAGAGGCACACTTATAGGCTA 58.969 43.478 0.00 0.00 37.08 3.93
3709 3773 5.372343 AATACCATGGATGTTAGTCAGCA 57.628 39.130 21.47 0.00 33.66 4.41
3887 3951 3.256631 CCCATGTTTAAGCTCTGCAGTTT 59.743 43.478 14.67 9.55 0.00 2.66
4087 4151 0.753262 ATTGAGTACCCTGGCTAGCG 59.247 55.000 9.00 0.00 0.00 4.26
4240 4304 2.022195 CATCCAGGATTGCAGGAACAG 58.978 52.381 0.00 0.00 34.62 3.16
4337 4405 1.073923 AGATTGAAACCCAGGTCGCTT 59.926 47.619 0.00 0.00 0.00 4.68
4379 4447 5.989477 AGATCACCTGAATTTCCGATACAA 58.011 37.500 0.00 0.00 0.00 2.41
4743 4811 6.266558 ACAAAACAACCACTATGCTTATGGAA 59.733 34.615 12.12 0.00 36.94 3.53
4749 4817 7.996098 ACTATACAAAACAACCACTATGCTT 57.004 32.000 0.00 0.00 0.00 3.91
5061 5130 5.819379 CAGCTCCACTGCTAAATTGAATCTA 59.181 40.000 0.00 0.00 41.98 1.98
5217 5286 4.569943 AGTGTGTCTGGATATGTTGTGTC 58.430 43.478 0.00 0.00 0.00 3.67
5278 5353 1.862827 ACGTCGTTTGTGTTAAGAGGC 59.137 47.619 0.00 0.00 0.00 4.70
5280 5355 5.400188 TCATGTACGTCGTTTGTGTTAAGAG 59.600 40.000 1.78 0.00 0.00 2.85
5283 5358 5.963140 TTCATGTACGTCGTTTGTGTTAA 57.037 34.783 1.78 0.00 0.00 2.01
5405 5480 1.818060 TGGGATTGCCTTTCGTGATTG 59.182 47.619 0.00 0.00 0.00 2.67
5451 5526 4.384647 GGATCCCAAGAGTAAACATCTGCT 60.385 45.833 0.00 0.00 0.00 4.24
5569 5644 2.294074 GGTTACACAGTCACCAAAGCA 58.706 47.619 0.00 0.00 30.87 3.91
5589 5664 4.275196 CCAGCTGGTGAAATATGATCTGTG 59.725 45.833 25.53 0.00 0.00 3.66
5649 5724 2.229792 GGCTTCACAGAATGGTCAACA 58.770 47.619 0.00 0.00 43.62 3.33
5654 5729 1.002134 CCGGGCTTCACAGAATGGT 60.002 57.895 0.00 0.00 43.62 3.55
5669 5744 3.057806 GCCATACGAATTAAAATCCCCGG 60.058 47.826 0.00 0.00 0.00 5.73
5671 5746 4.558697 GCTGCCATACGAATTAAAATCCCC 60.559 45.833 0.00 0.00 0.00 4.81
5794 5869 6.205658 ACATAAAGCTTCTCTCTTGTTGGAAC 59.794 38.462 0.00 0.00 0.00 3.62
5891 5966 6.707608 AGCGAGCAACTAATTCATGAATATCA 59.292 34.615 21.00 8.87 0.00 2.15
5892 5967 7.126726 AGCGAGCAACTAATTCATGAATATC 57.873 36.000 21.00 9.62 0.00 1.63
5911 5986 1.216122 GCAGCAGGAGAAATAGCGAG 58.784 55.000 0.00 0.00 0.00 5.03
5913 5988 1.372582 TTGCAGCAGGAGAAATAGCG 58.627 50.000 0.00 0.00 0.00 4.26
5940 6016 9.086336 TGCTCTTTTTCACAAATAGAAAGTTTG 57.914 29.630 0.00 0.00 41.22 2.93
5994 6070 8.123639 TCTTATACCTCTGTCAATAGTATGGC 57.876 38.462 0.00 0.00 0.00 4.40
6007 6083 5.233083 TGCCCATCATTCTTATACCTCTG 57.767 43.478 0.00 0.00 0.00 3.35
6048 6124 3.736094 TCCAGTCCCATATTCAGAACCT 58.264 45.455 0.00 0.00 0.00 3.50
6179 6255 1.918800 AGCCTTAACTCCCTGCGGT 60.919 57.895 0.00 0.00 0.00 5.68
6214 6290 4.439305 TTGCTTCAATGGATTCTTTCGG 57.561 40.909 0.00 0.00 0.00 4.30
6228 6304 3.278574 CCATCCCGACTAAATTGCTTCA 58.721 45.455 0.00 0.00 0.00 3.02
6254 6330 4.323028 CCAGACTTGAAGCACAGAGGAATA 60.323 45.833 0.00 0.00 0.00 1.75
6565 6641 9.736414 TCTAAGAAGTACTTCACAGTATGTAGT 57.264 33.333 31.80 8.75 43.40 2.73
6572 6648 9.523168 AGTCTATTCTAAGAAGTACTTCACAGT 57.477 33.333 31.80 18.39 41.84 3.55
6573 6649 9.781834 CAGTCTATTCTAAGAAGTACTTCACAG 57.218 37.037 31.80 26.23 41.84 3.66
6574 6650 8.244802 GCAGTCTATTCTAAGAAGTACTTCACA 58.755 37.037 31.80 19.78 41.84 3.58
6575 6651 8.244802 TGCAGTCTATTCTAAGAAGTACTTCAC 58.755 37.037 31.80 19.50 41.84 3.18
6576 6652 8.349568 TGCAGTCTATTCTAAGAAGTACTTCA 57.650 34.615 31.80 15.24 41.84 3.02
6732 6814 7.506114 AGTATTTTCAGTACAGGAACAACTCA 58.494 34.615 0.00 0.00 0.00 3.41
6956 7042 9.448438 TGTTAGCATAATTTCTCACACAATAGT 57.552 29.630 0.00 0.00 0.00 2.12
6961 7048 6.488344 TGGTTGTTAGCATAATTTCTCACACA 59.512 34.615 0.00 0.00 0.00 3.72
6971 7058 5.303078 TGTGGTTGTTGGTTGTTAGCATAAT 59.697 36.000 0.00 0.00 0.00 1.28
6985 7072 4.302455 TGTTGTTGTTCTTGTGGTTGTTG 58.698 39.130 0.00 0.00 0.00 3.33
6986 7073 4.592485 TGTTGTTGTTCTTGTGGTTGTT 57.408 36.364 0.00 0.00 0.00 2.83
6987 7074 4.202161 TGTTGTTGTTGTTCTTGTGGTTGT 60.202 37.500 0.00 0.00 0.00 3.32
6988 7075 4.302455 TGTTGTTGTTGTTCTTGTGGTTG 58.698 39.130 0.00 0.00 0.00 3.77
6989 7076 4.592485 TGTTGTTGTTGTTCTTGTGGTT 57.408 36.364 0.00 0.00 0.00 3.67
6990 7077 4.202161 TGTTGTTGTTGTTGTTCTTGTGGT 60.202 37.500 0.00 0.00 0.00 4.16
6991 7078 4.302455 TGTTGTTGTTGTTGTTCTTGTGG 58.698 39.130 0.00 0.00 0.00 4.17
6992 7079 5.233050 TGTTGTTGTTGTTGTTGTTCTTGTG 59.767 36.000 0.00 0.00 0.00 3.33
6993 7080 5.352284 TGTTGTTGTTGTTGTTGTTCTTGT 58.648 33.333 0.00 0.00 0.00 3.16
6994 7081 5.896922 TGTTGTTGTTGTTGTTGTTCTTG 57.103 34.783 0.00 0.00 0.00 3.02
6995 7082 5.812642 TGTTGTTGTTGTTGTTGTTGTTCTT 59.187 32.000 0.00 0.00 0.00 2.52
6996 7083 5.352284 TGTTGTTGTTGTTGTTGTTGTTCT 58.648 33.333 0.00 0.00 0.00 3.01
6997 7084 5.643339 TGTTGTTGTTGTTGTTGTTGTTC 57.357 34.783 0.00 0.00 0.00 3.18
6998 7085 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
6999 7086 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
7000 7087 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
7001 7088 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
7002 7089 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
7003 7090 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
7004 7091 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
7005 7092 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
7006 7093 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
7007 7094 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
7008 7095 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
7009 7096 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
7010 7097 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
7011 7098 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
7012 7099 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
7013 7100 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
7014 7101 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
7015 7102 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
7016 7103 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
7017 7104 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
7043 7130 4.250116 TGCTGTTGTTCTTGTTGTTGTT 57.750 36.364 0.00 0.00 0.00 2.83
7044 7131 3.932545 TGCTGTTGTTCTTGTTGTTGT 57.067 38.095 0.00 0.00 0.00 3.32
7046 7133 4.236935 CTGTTGCTGTTGTTCTTGTTGTT 58.763 39.130 0.00 0.00 0.00 2.83
7048 7135 2.599973 GCTGTTGCTGTTGTTCTTGTTG 59.400 45.455 0.00 0.00 36.03 3.33
7049 7136 2.230992 TGCTGTTGCTGTTGTTCTTGTT 59.769 40.909 0.00 0.00 40.48 2.83
7050 7137 1.818060 TGCTGTTGCTGTTGTTCTTGT 59.182 42.857 0.00 0.00 40.48 3.16
7053 7140 1.818060 TGTTGCTGTTGCTGTTGTTCT 59.182 42.857 0.00 0.00 40.48 3.01
7054 7141 2.187707 CTGTTGCTGTTGCTGTTGTTC 58.812 47.619 0.00 0.00 40.48 3.18
7060 7147 0.179132 TGTTGCTGTTGCTGTTGCTG 60.179 50.000 0.00 0.00 40.48 4.41
7061 7148 0.531657 TTGTTGCTGTTGCTGTTGCT 59.468 45.000 0.00 0.00 40.48 3.91
7062 7149 0.646895 GTTGTTGCTGTTGCTGTTGC 59.353 50.000 0.00 0.00 40.48 4.17
7063 7150 1.993542 TGTTGTTGCTGTTGCTGTTG 58.006 45.000 0.00 0.00 40.48 3.33
7064 7151 2.336667 GTTGTTGTTGCTGTTGCTGTT 58.663 42.857 0.00 0.00 40.48 3.16
7065 7152 1.404047 GGTTGTTGTTGCTGTTGCTGT 60.404 47.619 0.00 0.00 40.48 4.40
7066 7153 1.280066 GGTTGTTGTTGCTGTTGCTG 58.720 50.000 0.00 0.00 40.48 4.41
7067 7154 0.894141 TGGTTGTTGTTGCTGTTGCT 59.106 45.000 0.00 0.00 40.48 3.91
7072 7159 2.360553 TGTTGTGGTTGTTGTTGCTG 57.639 45.000 0.00 0.00 0.00 4.41
7073 7160 2.611722 GGTTGTTGTGGTTGTTGTTGCT 60.612 45.455 0.00 0.00 0.00 3.91
7074 7161 1.729517 GGTTGTTGTGGTTGTTGTTGC 59.270 47.619 0.00 0.00 0.00 4.17
7075 7162 2.734079 GTGGTTGTTGTGGTTGTTGTTG 59.266 45.455 0.00 0.00 0.00 3.33
7078 7165 1.273606 TGGTGGTTGTTGTGGTTGTTG 59.726 47.619 0.00 0.00 0.00 3.33
7080 7167 0.892063 GTGGTGGTTGTTGTGGTTGT 59.108 50.000 0.00 0.00 0.00 3.32
7081 7168 0.891373 TGTGGTGGTTGTTGTGGTTG 59.109 50.000 0.00 0.00 0.00 3.77
7082 7169 1.273886 GTTGTGGTGGTTGTTGTGGTT 59.726 47.619 0.00 0.00 0.00 3.67
7083 7170 0.892063 GTTGTGGTGGTTGTTGTGGT 59.108 50.000 0.00 0.00 0.00 4.16
7084 7171 0.891373 TGTTGTGGTGGTTGTTGTGG 59.109 50.000 0.00 0.00 0.00 4.17
7086 7173 1.273886 GGTTGTTGTGGTGGTTGTTGT 59.726 47.619 0.00 0.00 0.00 3.32
7087 7174 1.273606 TGGTTGTTGTGGTGGTTGTTG 59.726 47.619 0.00 0.00 0.00 3.33
7091 7178 0.251832 TGGTGGTTGTTGTGGTGGTT 60.252 50.000 0.00 0.00 0.00 3.67
7092 7179 0.968393 GTGGTGGTTGTTGTGGTGGT 60.968 55.000 0.00 0.00 0.00 4.16
7093 7180 1.671901 GGTGGTGGTTGTTGTGGTGG 61.672 60.000 0.00 0.00 0.00 4.61
7094 7181 0.967887 TGGTGGTGGTTGTTGTGGTG 60.968 55.000 0.00 0.00 0.00 4.17
7095 7182 0.968393 GTGGTGGTGGTTGTTGTGGT 60.968 55.000 0.00 0.00 0.00 4.16
7097 7184 0.967887 TGGTGGTGGTGGTTGTTGTG 60.968 55.000 0.00 0.00 0.00 3.33
7098 7185 0.968393 GTGGTGGTGGTGGTTGTTGT 60.968 55.000 0.00 0.00 0.00 3.32
7099 7186 1.671901 GGTGGTGGTGGTGGTTGTTG 61.672 60.000 0.00 0.00 0.00 3.33
7100 7187 1.380650 GGTGGTGGTGGTGGTTGTT 60.381 57.895 0.00 0.00 0.00 2.83
7101 7188 2.277404 GGTGGTGGTGGTGGTTGT 59.723 61.111 0.00 0.00 0.00 3.32
7102 7189 2.124693 GTGGTGGTGGTGGTGGTTG 61.125 63.158 0.00 0.00 0.00 3.77
7103 7190 2.277404 GTGGTGGTGGTGGTGGTT 59.723 61.111 0.00 0.00 0.00 3.67
7104 7191 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
7105 7192 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
7106 7193 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
7107 7194 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
7108 7195 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
7110 7197 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
7111 7198 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
7112 7199 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
7113 7200 2.617453 TTGTGGTGGTGGTGGTGGT 61.617 57.895 0.00 0.00 0.00 4.16
7114 7201 2.124693 GTTGTGGTGGTGGTGGTGG 61.125 63.158 0.00 0.00 0.00 4.61
7115 7202 0.967887 TTGTTGTGGTGGTGGTGGTG 60.968 55.000 0.00 0.00 0.00 4.17
7117 7204 0.967887 TGTTGTTGTGGTGGTGGTGG 60.968 55.000 0.00 0.00 0.00 4.61
7119 7206 0.892063 GTTGTTGTTGTGGTGGTGGT 59.108 50.000 0.00 0.00 0.00 4.16
7120 7207 0.891373 TGTTGTTGTTGTGGTGGTGG 59.109 50.000 0.00 0.00 0.00 4.61
7121 7208 2.288457 TGTTGTTGTTGTTGTGGTGGTG 60.288 45.455 0.00 0.00 0.00 4.17
7122 7209 1.964223 TGTTGTTGTTGTTGTGGTGGT 59.036 42.857 0.00 0.00 0.00 4.16
7123 7210 2.732412 TGTTGTTGTTGTTGTGGTGG 57.268 45.000 0.00 0.00 0.00 4.61
7124 7211 3.384668 TGTTGTTGTTGTTGTTGTGGTG 58.615 40.909 0.00 0.00 0.00 4.17
7125 7212 3.735237 TGTTGTTGTTGTTGTTGTGGT 57.265 38.095 0.00 0.00 0.00 4.16
7127 7214 5.395325 TTGTTGTTGTTGTTGTTGTTGTG 57.605 34.783 0.00 0.00 0.00 3.33
7128 7215 5.582665 ACTTTGTTGTTGTTGTTGTTGTTGT 59.417 32.000 0.00 0.00 0.00 3.32
7129 7216 6.042144 ACTTTGTTGTTGTTGTTGTTGTTG 57.958 33.333 0.00 0.00 0.00 3.33
7130 7217 5.235401 GGACTTTGTTGTTGTTGTTGTTGTT 59.765 36.000 0.00 0.00 0.00 2.83
7133 7220 4.039852 AGGGACTTTGTTGTTGTTGTTGTT 59.960 37.500 0.00 0.00 27.25 2.83
7134 7221 3.576550 AGGGACTTTGTTGTTGTTGTTGT 59.423 39.130 0.00 0.00 27.25 3.32
7136 7223 4.086457 AGAGGGACTTTGTTGTTGTTGTT 58.914 39.130 0.00 0.00 41.55 2.83
7138 7225 4.718940 AAGAGGGACTTTGTTGTTGTTG 57.281 40.909 0.00 0.00 41.55 3.33
7139 7226 6.183360 CCATAAAGAGGGACTTTGTTGTTGTT 60.183 38.462 0.00 0.00 46.62 2.83
7140 7227 5.301805 CCATAAAGAGGGACTTTGTTGTTGT 59.698 40.000 0.00 0.00 46.62 3.32
7141 7228 5.534654 TCCATAAAGAGGGACTTTGTTGTTG 59.465 40.000 0.00 0.00 46.62 3.33
7142 7229 5.701224 TCCATAAAGAGGGACTTTGTTGTT 58.299 37.500 0.00 0.00 46.62 2.83
7143 7230 5.319043 TCCATAAAGAGGGACTTTGTTGT 57.681 39.130 0.00 0.00 46.62 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.