Multiple sequence alignment - TraesCS7D01G222800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G222800 chr7D 100.000 4695 0 0 1 4695 184163268 184167962 0.000000e+00 8671.0
1 TraesCS7D01G222800 chr7D 92.000 300 14 2 338 627 444357224 444356925 3.380000e-111 412.0
2 TraesCS7D01G222800 chr7A 93.357 1656 65 15 668 2314 186544570 186542951 0.000000e+00 2407.0
3 TraesCS7D01G222800 chr7A 93.555 1505 72 10 2365 3844 186542562 186541058 0.000000e+00 2218.0
4 TraesCS7D01G222800 chr7A 93.460 367 18 3 4329 4695 186540732 186540372 1.490000e-149 540.0
5 TraesCS7D01G222800 chr7A 90.087 343 25 1 2 335 186546186 186545844 2.010000e-118 436.0
6 TraesCS7D01G222800 chr7A 91.139 316 14 9 3839 4145 186541036 186540726 2.610000e-112 416.0
7 TraesCS7D01G222800 chr7A 93.401 197 10 1 4138 4331 47442107 47442303 5.940000e-74 289.0
8 TraesCS7D01G222800 chr7B 94.196 1499 67 10 2366 3844 153424982 153426480 0.000000e+00 2268.0
9 TraesCS7D01G222800 chr7B 89.820 776 49 10 1448 2223 153424033 153424778 0.000000e+00 968.0
10 TraesCS7D01G222800 chr7B 89.507 629 23 9 749 1343 153423111 153423730 0.000000e+00 756.0
11 TraesCS7D01G222800 chr7B 93.770 305 19 0 3841 4145 153426504 153426808 4.280000e-125 459.0
12 TraesCS7D01G222800 chr7B 94.636 261 13 1 335 594 518385459 518385719 2.030000e-108 403.0
13 TraesCS7D01G222800 chr7B 93.939 264 11 3 4326 4584 153426799 153427062 1.220000e-105 394.0
14 TraesCS7D01G222800 chr7B 91.129 124 6 3 628 751 153422797 153422915 3.760000e-36 163.0
15 TraesCS7D01G222800 chr7B 90.435 115 11 0 4329 4443 427397819 427397933 8.140000e-33 152.0
16 TraesCS7D01G222800 chr7B 87.013 77 5 4 2273 2345 153424778 153424853 1.080000e-11 82.4
17 TraesCS7D01G222800 chr2D 92.079 303 14 2 335 627 76640440 76640742 7.270000e-113 418.0
18 TraesCS7D01G222800 chr2D 95.455 44 2 0 4102 4145 380077606 380077649 2.340000e-08 71.3
19 TraesCS7D01G222800 chr2D 95.455 44 2 0 4102 4145 564446658 564446615 2.340000e-08 71.3
20 TraesCS7D01G222800 chr6D 91.749 303 15 2 335 627 123976414 123976716 3.380000e-111 412.0
21 TraesCS7D01G222800 chr6D 92.611 203 8 5 4136 4333 326567071 326566871 7.690000e-73 285.0
22 TraesCS7D01G222800 chr6D 88.000 125 15 0 4326 4450 65644095 65644219 1.050000e-31 148.0
23 TraesCS7D01G222800 chr3D 91.262 309 16 4 335 632 20892907 20893215 1.220000e-110 411.0
24 TraesCS7D01G222800 chr3D 91.419 303 16 2 335 627 528141541 528141843 1.570000e-109 407.0
25 TraesCS7D01G222800 chr3D 94.554 202 6 3 4138 4335 528183634 528183434 1.640000e-79 307.0
26 TraesCS7D01G222800 chr3D 89.256 121 13 0 4326 4446 441388784 441388664 8.140000e-33 152.0
27 TraesCS7D01G222800 chr3D 82.036 167 22 8 4326 4489 375193875 375193714 8.190000e-28 135.0
28 TraesCS7D01G222800 chr1D 91.419 303 16 2 335 627 205083899 205084201 1.570000e-109 407.0
29 TraesCS7D01G222800 chr1D 91.667 300 15 2 338 627 361354951 361354652 1.570000e-109 407.0
30 TraesCS7D01G222800 chr5B 90.378 291 24 2 338 627 528709234 528708947 3.430000e-101 379.0
31 TraesCS7D01G222800 chr5B 93.182 44 3 0 4102 4145 591709911 591709954 1.090000e-06 65.8
32 TraesCS7D01G222800 chr6A 96.257 187 6 1 4146 4331 479040034 479039848 5.900000e-79 305.0
33 TraesCS7D01G222800 chr5A 95.789 190 4 2 4139 4325 18658581 18658769 2.120000e-78 303.0
34 TraesCS7D01G222800 chr1A 96.175 183 4 1 4146 4325 483658720 483658538 3.550000e-76 296.0
35 TraesCS7D01G222800 chr3A 95.213 188 5 2 4141 4325 68866674 68866488 1.280000e-75 294.0
36 TraesCS7D01G222800 chr3A 94.737 190 6 2 4146 4331 9970333 9970144 4.600000e-75 292.0
37 TraesCS7D01G222800 chr3A 89.256 121 13 0 4326 4446 582283332 582283212 8.140000e-33 152.0
38 TraesCS7D01G222800 chr3A 90.566 53 4 1 4095 4146 637465440 637465388 8.430000e-08 69.4
39 TraesCS7D01G222800 chr2A 92.965 199 11 1 4139 4334 629108415 629108613 2.140000e-73 287.0
40 TraesCS7D01G222800 chr4B 89.831 118 12 0 4326 4443 106227526 106227409 8.140000e-33 152.0
41 TraesCS7D01G222800 chr4B 93.182 44 3 0 4102 4145 576197344 576197301 1.090000e-06 65.8
42 TraesCS7D01G222800 chr2B 89.076 119 13 0 4326 4444 545266820 545266702 1.050000e-31 148.0
43 TraesCS7D01G222800 chr3B 91.489 47 4 0 4099 4145 572268405 572268451 1.090000e-06 65.8
44 TraesCS7D01G222800 chr5D 89.583 48 5 0 4094 4141 506857595 506857548 1.410000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G222800 chr7D 184163268 184167962 4694 False 8671.0 8671 100.000000 1 4695 1 chr7D.!!$F1 4694
1 TraesCS7D01G222800 chr7A 186540372 186546186 5814 True 1203.4 2407 92.319600 2 4695 5 chr7A.!!$R1 4693
2 TraesCS7D01G222800 chr7B 153422797 153427062 4265 False 727.2 2268 91.339143 628 4584 7 chr7B.!!$F3 3956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 614 0.108186 TCTGCTGCGAATCCGTTGAT 60.108 50.0 0.00 0.00 38.24 2.57 F
926 2367 0.248012 ACGAACCACTCACACACACA 59.752 50.0 0.00 0.00 0.00 3.72 F
1664 3348 0.535797 CTCCCTTCCCGTAACTGTCC 59.464 60.0 0.00 0.00 0.00 4.02 F
2269 3964 0.108138 ACCGGTGAGCTAGCAATCAC 60.108 55.0 22.61 22.61 44.10 3.06 F
2270 3965 0.176680 CCGGTGAGCTAGCAATCACT 59.823 55.0 26.92 4.51 44.23 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 3805 0.179108 GGTACGGAGTCATGGTCTGC 60.179 60.000 0.00 0.00 43.93 4.26 R
2211 3906 0.465287 GGCCCCTGCATATTTTGGTG 59.535 55.000 0.00 0.00 40.13 4.17 R
3439 5554 0.037326 TGAAGCACGTGTCCAGGATC 60.037 55.000 18.38 5.99 0.00 3.36 R
3682 5797 0.963856 CCATTCTTCAGCTGCAGCCA 60.964 55.000 34.39 19.42 43.38 4.75 R
4081 6237 1.008538 GCAATTATTGGAGGCGGCG 60.009 57.895 0.51 0.51 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.686052 GGTTTGATGCTTTGGTGTCCA 59.314 47.619 0.00 0.00 0.00 4.02
61 62 2.027625 CAGGTGGAGGCGACGTTTC 61.028 63.158 0.00 0.00 0.00 2.78
89 90 1.961277 CGACTTGCCTGTGGTGACC 60.961 63.158 0.00 0.00 0.00 4.02
100 101 3.529533 CTGTGGTGACCTCATCAATCTC 58.470 50.000 6.86 0.00 38.92 2.75
108 109 2.507471 ACCTCATCAATCTCAAGACCCC 59.493 50.000 0.00 0.00 0.00 4.95
136 137 5.082251 TCAGTCTCTTCCAGATGTTCATG 57.918 43.478 0.00 0.00 32.08 3.07
139 140 2.507058 TCTCTTCCAGATGTTCATGGGG 59.493 50.000 0.00 0.00 37.19 4.96
148 149 4.102210 CAGATGTTCATGGGGAGAGTATGT 59.898 45.833 0.00 0.00 0.00 2.29
149 150 3.912496 TGTTCATGGGGAGAGTATGTG 57.088 47.619 0.00 0.00 0.00 3.21
157 158 1.407299 GGGAGAGTATGTGTGCATGCA 60.407 52.381 18.46 18.46 39.68 3.96
164 165 7.194607 AGAGTATGTGTGCATGCATTTATAC 57.805 36.000 25.64 26.35 39.68 1.47
165 166 5.989249 AGTATGTGTGCATGCATTTATACG 58.011 37.500 25.64 0.00 39.68 3.06
180 181 6.872020 GCATTTATACGGGTGAGTGTATGTAT 59.128 38.462 0.00 0.00 33.54 2.29
189 190 6.369340 CGGGTGAGTGTATGTATGTGTTTTTA 59.631 38.462 0.00 0.00 0.00 1.52
198 199 4.283678 TGTATGTGTTTTTAAGCGTGTGC 58.716 39.130 0.00 0.00 43.24 4.57
261 271 6.670695 ATACCATTATCCAATTTTGAGCCC 57.329 37.500 0.00 0.00 0.00 5.19
279 289 4.623863 AGCCCCAATATCAACTTCCAAAT 58.376 39.130 0.00 0.00 0.00 2.32
335 345 2.029728 CGACGAAATGAACTCTGCATCC 59.970 50.000 0.00 0.00 0.00 3.51
336 346 3.002791 GACGAAATGAACTCTGCATCCA 58.997 45.455 0.00 0.00 0.00 3.41
337 347 3.614092 ACGAAATGAACTCTGCATCCAT 58.386 40.909 0.00 0.00 0.00 3.41
338 348 3.376234 ACGAAATGAACTCTGCATCCATG 59.624 43.478 0.00 0.00 0.00 3.66
339 349 3.376234 CGAAATGAACTCTGCATCCATGT 59.624 43.478 0.00 0.00 0.00 3.21
340 350 4.142534 CGAAATGAACTCTGCATCCATGTT 60.143 41.667 0.00 0.00 0.00 2.71
341 351 5.620654 CGAAATGAACTCTGCATCCATGTTT 60.621 40.000 0.00 0.00 0.00 2.83
342 352 4.713824 ATGAACTCTGCATCCATGTTTG 57.286 40.909 0.00 0.00 0.00 2.93
343 353 2.821378 TGAACTCTGCATCCATGTTTGG 59.179 45.455 0.00 0.00 45.15 3.28
344 354 2.592102 ACTCTGCATCCATGTTTGGT 57.408 45.000 0.00 0.00 44.06 3.67
345 355 2.880443 ACTCTGCATCCATGTTTGGTT 58.120 42.857 0.00 0.00 44.06 3.67
346 356 2.821969 ACTCTGCATCCATGTTTGGTTC 59.178 45.455 0.00 0.00 44.06 3.62
347 357 1.811965 TCTGCATCCATGTTTGGTTCG 59.188 47.619 0.00 0.00 44.06 3.95
348 358 1.811965 CTGCATCCATGTTTGGTTCGA 59.188 47.619 0.00 0.00 44.06 3.71
349 359 1.539388 TGCATCCATGTTTGGTTCGAC 59.461 47.619 0.00 0.00 44.06 4.20
350 360 1.812571 GCATCCATGTTTGGTTCGACT 59.187 47.619 0.00 0.00 44.06 4.18
351 361 2.414559 GCATCCATGTTTGGTTCGACTG 60.415 50.000 0.00 0.00 44.06 3.51
352 362 2.631160 TCCATGTTTGGTTCGACTGT 57.369 45.000 0.00 0.00 44.06 3.55
353 363 2.217750 TCCATGTTTGGTTCGACTGTG 58.782 47.619 0.00 0.00 44.06 3.66
354 364 1.266718 CCATGTTTGGTTCGACTGTGG 59.733 52.381 0.00 0.00 38.30 4.17
355 365 2.217750 CATGTTTGGTTCGACTGTGGA 58.782 47.619 0.00 0.00 0.00 4.02
356 366 2.631160 TGTTTGGTTCGACTGTGGAT 57.369 45.000 0.00 0.00 0.00 3.41
357 367 2.925724 TGTTTGGTTCGACTGTGGATT 58.074 42.857 0.00 0.00 0.00 3.01
358 368 3.283751 TGTTTGGTTCGACTGTGGATTT 58.716 40.909 0.00 0.00 0.00 2.17
359 369 3.314080 TGTTTGGTTCGACTGTGGATTTC 59.686 43.478 0.00 0.00 0.00 2.17
360 370 3.485463 TTGGTTCGACTGTGGATTTCT 57.515 42.857 0.00 0.00 0.00 2.52
361 371 4.610605 TTGGTTCGACTGTGGATTTCTA 57.389 40.909 0.00 0.00 0.00 2.10
362 372 4.610605 TGGTTCGACTGTGGATTTCTAA 57.389 40.909 0.00 0.00 0.00 2.10
363 373 4.963373 TGGTTCGACTGTGGATTTCTAAA 58.037 39.130 0.00 0.00 0.00 1.85
364 374 5.369833 TGGTTCGACTGTGGATTTCTAAAA 58.630 37.500 0.00 0.00 0.00 1.52
365 375 5.468746 TGGTTCGACTGTGGATTTCTAAAAG 59.531 40.000 0.00 0.00 0.00 2.27
366 376 5.383130 GTTCGACTGTGGATTTCTAAAAGC 58.617 41.667 0.00 0.00 0.00 3.51
367 377 4.637276 TCGACTGTGGATTTCTAAAAGCA 58.363 39.130 0.00 0.00 0.00 3.91
368 378 4.690748 TCGACTGTGGATTTCTAAAAGCAG 59.309 41.667 0.00 0.00 0.00 4.24
369 379 4.670221 CGACTGTGGATTTCTAAAAGCAGC 60.670 45.833 0.00 0.00 0.00 5.25
370 380 4.401925 ACTGTGGATTTCTAAAAGCAGCT 58.598 39.130 0.00 0.00 0.00 4.24
371 381 4.217118 ACTGTGGATTTCTAAAAGCAGCTG 59.783 41.667 10.11 10.11 0.00 4.24
372 382 4.144297 TGTGGATTTCTAAAAGCAGCTGT 58.856 39.130 16.64 0.00 0.00 4.40
373 383 4.022935 TGTGGATTTCTAAAAGCAGCTGTG 60.023 41.667 16.64 0.00 0.00 3.66
374 384 4.216257 GTGGATTTCTAAAAGCAGCTGTGA 59.784 41.667 16.64 1.92 0.00 3.58
375 385 4.826733 TGGATTTCTAAAAGCAGCTGTGAA 59.173 37.500 16.64 7.75 0.00 3.18
376 386 5.301551 TGGATTTCTAAAAGCAGCTGTGAAA 59.698 36.000 16.64 15.06 0.00 2.69
377 387 6.183360 TGGATTTCTAAAAGCAGCTGTGAAAA 60.183 34.615 16.64 7.20 0.00 2.29
378 388 6.701400 GGATTTCTAAAAGCAGCTGTGAAAAA 59.299 34.615 16.64 7.71 0.00 1.94
379 389 6.885735 TTTCTAAAAGCAGCTGTGAAAAAC 57.114 33.333 16.64 0.00 0.00 2.43
380 390 5.574891 TCTAAAAGCAGCTGTGAAAAACA 57.425 34.783 16.64 0.00 37.22 2.83
391 401 4.527509 TGTGAAAAACAGCTGTGGAAAA 57.472 36.364 22.49 3.76 33.78 2.29
392 402 4.887748 TGTGAAAAACAGCTGTGGAAAAA 58.112 34.783 22.49 1.99 33.78 1.94
393 403 4.688413 TGTGAAAAACAGCTGTGGAAAAAC 59.312 37.500 22.49 14.87 33.78 2.43
394 404 4.688413 GTGAAAAACAGCTGTGGAAAAACA 59.312 37.500 22.49 11.53 0.00 2.83
395 405 5.178438 GTGAAAAACAGCTGTGGAAAAACAA 59.822 36.000 22.49 0.00 0.00 2.83
396 406 5.178438 TGAAAAACAGCTGTGGAAAAACAAC 59.822 36.000 22.49 4.83 0.00 3.32
397 407 4.535526 AAACAGCTGTGGAAAAACAACT 57.464 36.364 22.49 0.00 0.00 3.16
398 408 3.508744 ACAGCTGTGGAAAAACAACTG 57.491 42.857 20.97 6.26 45.55 3.16
399 409 3.508744 CAGCTGTGGAAAAACAACTGT 57.491 42.857 5.25 0.00 38.75 3.55
400 410 3.181397 CAGCTGTGGAAAAACAACTGTG 58.819 45.455 5.25 0.00 38.75 3.66
401 411 2.166254 AGCTGTGGAAAAACAACTGTGG 59.834 45.455 0.00 0.00 0.00 4.17
402 412 2.165437 GCTGTGGAAAAACAACTGTGGA 59.835 45.455 0.00 0.00 0.00 4.02
403 413 3.367910 GCTGTGGAAAAACAACTGTGGAA 60.368 43.478 0.00 0.00 0.00 3.53
404 414 4.815269 CTGTGGAAAAACAACTGTGGAAA 58.185 39.130 0.00 0.00 0.00 3.13
405 415 5.215252 TGTGGAAAAACAACTGTGGAAAA 57.785 34.783 0.00 0.00 0.00 2.29
406 416 5.799213 TGTGGAAAAACAACTGTGGAAAAT 58.201 33.333 0.00 0.00 0.00 1.82
407 417 5.872070 TGTGGAAAAACAACTGTGGAAAATC 59.128 36.000 0.00 0.00 0.00 2.17
408 418 6.106003 GTGGAAAAACAACTGTGGAAAATCT 58.894 36.000 0.00 0.00 0.00 2.40
409 419 7.093727 TGTGGAAAAACAACTGTGGAAAATCTA 60.094 33.333 0.00 0.00 0.00 1.98
410 420 7.762159 GTGGAAAAACAACTGTGGAAAATCTAA 59.238 33.333 0.00 0.00 0.00 2.10
411 421 8.482128 TGGAAAAACAACTGTGGAAAATCTAAT 58.518 29.630 0.00 0.00 0.00 1.73
412 422 8.764287 GGAAAAACAACTGTGGAAAATCTAATG 58.236 33.333 0.00 0.00 0.00 1.90
413 423 9.313118 GAAAAACAACTGTGGAAAATCTAATGT 57.687 29.630 0.00 0.00 0.00 2.71
414 424 8.647143 AAAACAACTGTGGAAAATCTAATGTG 57.353 30.769 0.00 0.00 0.00 3.21
415 425 7.581213 AACAACTGTGGAAAATCTAATGTGA 57.419 32.000 0.00 0.00 0.00 3.58
416 426 7.581213 ACAACTGTGGAAAATCTAATGTGAA 57.419 32.000 0.00 0.00 0.00 3.18
417 427 8.006298 ACAACTGTGGAAAATCTAATGTGAAA 57.994 30.769 0.00 0.00 0.00 2.69
418 428 8.474025 ACAACTGTGGAAAATCTAATGTGAAAA 58.526 29.630 0.00 0.00 0.00 2.29
419 429 9.311916 CAACTGTGGAAAATCTAATGTGAAAAA 57.688 29.630 0.00 0.00 0.00 1.94
420 430 9.533253 AACTGTGGAAAATCTAATGTGAAAAAG 57.467 29.630 0.00 0.00 0.00 2.27
421 431 8.912988 ACTGTGGAAAATCTAATGTGAAAAAGA 58.087 29.630 0.00 0.00 0.00 2.52
422 432 9.918630 CTGTGGAAAATCTAATGTGAAAAAGAT 57.081 29.630 0.00 0.00 0.00 2.40
423 433 9.695526 TGTGGAAAATCTAATGTGAAAAAGATG 57.304 29.630 0.00 0.00 0.00 2.90
424 434 9.696917 GTGGAAAATCTAATGTGAAAAAGATGT 57.303 29.630 0.00 0.00 0.00 3.06
430 440 9.739276 AATCTAATGTGAAAAAGATGTAGGTCA 57.261 29.630 0.00 0.00 0.00 4.02
431 441 9.911788 ATCTAATGTGAAAAAGATGTAGGTCAT 57.088 29.630 0.00 0.00 39.77 3.06
432 442 9.739276 TCTAATGTGAAAAAGATGTAGGTCATT 57.261 29.630 0.00 0.00 36.83 2.57
435 445 6.980593 TGTGAAAAAGATGTAGGTCATTTGG 58.019 36.000 0.00 0.00 36.83 3.28
436 446 5.863935 GTGAAAAAGATGTAGGTCATTTGGC 59.136 40.000 0.00 0.00 36.83 4.52
437 447 5.538053 TGAAAAAGATGTAGGTCATTTGGCA 59.462 36.000 0.00 0.00 36.83 4.92
438 448 6.041409 TGAAAAAGATGTAGGTCATTTGGCAA 59.959 34.615 0.00 0.00 36.83 4.52
439 449 6.418057 AAAAGATGTAGGTCATTTGGCAAA 57.582 33.333 16.01 16.01 36.83 3.68
440 450 5.391312 AAGATGTAGGTCATTTGGCAAAC 57.609 39.130 16.00 3.12 36.83 2.93
441 451 3.763897 AGATGTAGGTCATTTGGCAAACC 59.236 43.478 16.00 13.12 36.83 3.27
442 452 3.509575 GATGTAGGTCATTTGGCAAACCA 59.490 43.478 16.00 1.33 39.74 3.67
443 453 4.380867 GATGTAGGTCATTTGGCAAACCAG 60.381 45.833 16.00 8.58 41.40 4.00
444 454 7.845340 GATGTAGGTCATTTGGCAAACCAGC 62.845 48.000 16.00 13.65 41.40 4.85
452 462 1.825090 TGGCAAACCAGCTGATACAG 58.175 50.000 17.39 0.00 42.67 2.74
468 478 7.807687 CTGATACAGCTTTTTCAGATTTTGG 57.192 36.000 13.26 0.00 38.25 3.28
469 479 6.158598 TGATACAGCTTTTTCAGATTTTGGC 58.841 36.000 0.00 0.00 0.00 4.52
470 480 4.677673 ACAGCTTTTTCAGATTTTGGCT 57.322 36.364 0.00 0.00 0.00 4.75
471 481 4.625028 ACAGCTTTTTCAGATTTTGGCTC 58.375 39.130 0.00 0.00 0.00 4.70
472 482 3.671928 CAGCTTTTTCAGATTTTGGCTCG 59.328 43.478 0.00 0.00 0.00 5.03
473 483 2.409715 GCTTTTTCAGATTTTGGCTCGC 59.590 45.455 0.00 0.00 0.00 5.03
474 484 3.641648 CTTTTTCAGATTTTGGCTCGCA 58.358 40.909 0.00 0.00 0.00 5.10
475 485 2.995466 TTTCAGATTTTGGCTCGCAG 57.005 45.000 0.00 0.00 0.00 5.18
476 486 0.523072 TTCAGATTTTGGCTCGCAGC 59.477 50.000 0.11 0.11 41.46 5.25
477 487 1.226211 CAGATTTTGGCTCGCAGCG 60.226 57.895 9.06 9.06 43.62 5.18
478 488 2.100991 GATTTTGGCTCGCAGCGG 59.899 61.111 16.42 6.95 43.62 5.52
479 489 2.359850 ATTTTGGCTCGCAGCGGA 60.360 55.556 16.42 0.47 43.62 5.54
480 490 1.922135 GATTTTGGCTCGCAGCGGAA 61.922 55.000 16.42 0.00 43.62 4.30
481 491 1.315257 ATTTTGGCTCGCAGCGGAAT 61.315 50.000 16.42 3.62 43.62 3.01
482 492 1.922135 TTTTGGCTCGCAGCGGAATC 61.922 55.000 16.42 3.25 43.62 2.52
483 493 3.604129 TTGGCTCGCAGCGGAATCA 62.604 57.895 16.42 5.97 43.62 2.57
484 494 3.267860 GGCTCGCAGCGGAATCAG 61.268 66.667 16.42 5.44 43.62 2.90
485 495 2.202797 GCTCGCAGCGGAATCAGA 60.203 61.111 16.42 0.00 0.00 3.27
486 496 1.593750 GCTCGCAGCGGAATCAGAT 60.594 57.895 16.42 0.00 0.00 2.90
487 497 1.156645 GCTCGCAGCGGAATCAGATT 61.157 55.000 16.42 0.00 0.00 2.40
488 498 1.293924 CTCGCAGCGGAATCAGATTT 58.706 50.000 16.42 0.00 0.00 2.17
489 499 1.667724 CTCGCAGCGGAATCAGATTTT 59.332 47.619 16.42 0.00 0.00 1.82
490 500 1.398041 TCGCAGCGGAATCAGATTTTG 59.602 47.619 16.42 0.00 0.00 2.44
491 501 1.532505 CGCAGCGGAATCAGATTTTGG 60.533 52.381 7.00 0.00 0.00 3.28
492 502 1.745087 GCAGCGGAATCAGATTTTGGA 59.255 47.619 0.00 0.00 0.00 3.53
493 503 2.164219 GCAGCGGAATCAGATTTTGGAA 59.836 45.455 0.00 0.00 0.00 3.53
494 504 3.367292 GCAGCGGAATCAGATTTTGGAAA 60.367 43.478 0.00 0.00 0.00 3.13
495 505 4.418392 CAGCGGAATCAGATTTTGGAAAG 58.582 43.478 0.00 0.00 0.00 2.62
496 506 3.119352 AGCGGAATCAGATTTTGGAAAGC 60.119 43.478 0.00 0.00 0.00 3.51
497 507 3.367292 GCGGAATCAGATTTTGGAAAGCA 60.367 43.478 0.00 0.00 0.00 3.91
498 508 4.168760 CGGAATCAGATTTTGGAAAGCAC 58.831 43.478 0.00 0.00 0.00 4.40
499 509 4.168760 GGAATCAGATTTTGGAAAGCACG 58.831 43.478 0.00 0.00 0.00 5.34
500 510 4.321230 GGAATCAGATTTTGGAAAGCACGT 60.321 41.667 0.00 0.00 0.00 4.49
501 511 3.896648 TCAGATTTTGGAAAGCACGTC 57.103 42.857 0.00 0.00 0.00 4.34
502 512 2.552315 TCAGATTTTGGAAAGCACGTCC 59.448 45.455 0.00 0.00 35.55 4.79
503 513 2.554032 CAGATTTTGGAAAGCACGTCCT 59.446 45.455 0.00 0.00 36.03 3.85
504 514 2.554032 AGATTTTGGAAAGCACGTCCTG 59.446 45.455 0.00 0.00 36.03 3.86
505 515 1.028905 TTTTGGAAAGCACGTCCTGG 58.971 50.000 0.00 0.00 36.03 4.45
506 516 0.821711 TTTGGAAAGCACGTCCTGGG 60.822 55.000 0.00 0.00 36.03 4.45
507 517 3.056328 GGAAAGCACGTCCTGGGC 61.056 66.667 0.00 0.00 31.94 5.36
508 518 2.032681 GAAAGCACGTCCTGGGCT 59.967 61.111 0.00 0.00 40.14 5.19
509 519 2.281761 AAAGCACGTCCTGGGCTG 60.282 61.111 0.00 0.00 38.04 4.85
513 523 2.743928 CACGTCCTGGGCTGCTTC 60.744 66.667 0.00 0.00 0.00 3.86
514 524 4.021925 ACGTCCTGGGCTGCTTCC 62.022 66.667 0.00 0.00 0.00 3.46
518 528 4.729918 CCTGGGCTGCTTCCGCTT 62.730 66.667 0.00 0.00 36.97 4.68
519 529 2.674380 CTGGGCTGCTTCCGCTTT 60.674 61.111 0.00 0.00 36.97 3.51
520 530 2.203480 TGGGCTGCTTCCGCTTTT 60.203 55.556 0.00 0.00 36.97 2.27
521 531 2.259511 GGGCTGCTTCCGCTTTTG 59.740 61.111 0.00 0.00 36.97 2.44
522 532 2.259511 GGCTGCTTCCGCTTTTGG 59.740 61.111 0.00 0.00 36.97 3.28
523 533 2.564721 GGCTGCTTCCGCTTTTGGT 61.565 57.895 0.00 0.00 36.97 3.67
524 534 1.363807 GCTGCTTCCGCTTTTGGTT 59.636 52.632 0.00 0.00 36.97 3.67
525 535 0.664466 GCTGCTTCCGCTTTTGGTTC 60.664 55.000 0.00 0.00 36.97 3.62
526 536 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
527 537 0.667993 TGCTTCCGCTTTTGGTTCAG 59.332 50.000 0.00 0.00 36.97 3.02
528 538 0.951558 GCTTCCGCTTTTGGTTCAGA 59.048 50.000 0.00 0.00 0.00 3.27
529 539 1.541588 GCTTCCGCTTTTGGTTCAGAT 59.458 47.619 0.00 0.00 0.00 2.90
530 540 2.029918 GCTTCCGCTTTTGGTTCAGATT 60.030 45.455 0.00 0.00 0.00 2.40
531 541 3.552890 GCTTCCGCTTTTGGTTCAGATTT 60.553 43.478 0.00 0.00 0.00 2.17
532 542 4.620982 CTTCCGCTTTTGGTTCAGATTTT 58.379 39.130 0.00 0.00 0.00 1.82
533 543 3.976169 TCCGCTTTTGGTTCAGATTTTG 58.024 40.909 0.00 0.00 0.00 2.44
534 544 3.634448 TCCGCTTTTGGTTCAGATTTTGA 59.366 39.130 0.00 0.00 0.00 2.69
535 545 3.735746 CCGCTTTTGGTTCAGATTTTGAC 59.264 43.478 0.00 0.00 34.94 3.18
536 546 4.358851 CGCTTTTGGTTCAGATTTTGACA 58.641 39.130 0.00 0.00 34.94 3.58
537 547 4.803088 CGCTTTTGGTTCAGATTTTGACAA 59.197 37.500 0.00 0.00 34.94 3.18
538 548 5.276348 CGCTTTTGGTTCAGATTTTGACAAC 60.276 40.000 0.00 0.00 34.94 3.32
539 549 5.276348 GCTTTTGGTTCAGATTTTGACAACG 60.276 40.000 0.00 0.00 34.94 4.10
540 550 5.568685 TTTGGTTCAGATTTTGACAACGA 57.431 34.783 0.00 0.00 34.94 3.85
541 551 5.568685 TTGGTTCAGATTTTGACAACGAA 57.431 34.783 0.00 0.00 34.94 3.85
542 552 5.766150 TGGTTCAGATTTTGACAACGAAT 57.234 34.783 0.00 0.00 34.94 3.34
543 553 6.142818 TGGTTCAGATTTTGACAACGAATT 57.857 33.333 0.00 0.00 34.94 2.17
544 554 6.568869 TGGTTCAGATTTTGACAACGAATTT 58.431 32.000 0.00 0.00 34.94 1.82
545 555 6.695278 TGGTTCAGATTTTGACAACGAATTTC 59.305 34.615 0.00 0.00 34.94 2.17
546 556 6.918022 GGTTCAGATTTTGACAACGAATTTCT 59.082 34.615 0.00 0.00 34.94 2.52
547 557 8.073768 GGTTCAGATTTTGACAACGAATTTCTA 58.926 33.333 0.00 0.00 34.94 2.10
548 558 9.107367 GTTCAGATTTTGACAACGAATTTCTAG 57.893 33.333 0.00 0.00 34.94 2.43
549 559 8.601845 TCAGATTTTGACAACGAATTTCTAGA 57.398 30.769 0.00 0.00 0.00 2.43
550 560 9.051679 TCAGATTTTGACAACGAATTTCTAGAA 57.948 29.630 0.00 0.00 0.00 2.10
551 561 9.831737 CAGATTTTGACAACGAATTTCTAGAAT 57.168 29.630 5.89 0.00 0.00 2.40
553 563 8.880768 ATTTTGACAACGAATTTCTAGAATCG 57.119 30.769 21.30 21.30 40.90 3.34
554 564 6.403333 TTGACAACGAATTTCTAGAATCGG 57.597 37.500 24.75 14.55 39.49 4.18
555 565 5.716094 TGACAACGAATTTCTAGAATCGGA 58.284 37.500 24.75 5.42 39.49 4.55
556 566 6.338146 TGACAACGAATTTCTAGAATCGGAT 58.662 36.000 24.75 14.63 39.49 4.18
557 567 6.816640 TGACAACGAATTTCTAGAATCGGATT 59.183 34.615 24.75 14.25 39.49 3.01
558 568 7.010183 TGACAACGAATTTCTAGAATCGGATTC 59.990 37.037 24.75 20.48 39.49 2.52
566 576 3.788672 GAATCGGATTCTGCTGGGT 57.211 52.632 20.70 0.00 36.37 4.51
567 577 2.044123 GAATCGGATTCTGCTGGGTT 57.956 50.000 20.70 0.00 36.37 4.11
568 578 1.943340 GAATCGGATTCTGCTGGGTTC 59.057 52.381 20.70 0.00 36.37 3.62
569 579 0.179073 ATCGGATTCTGCTGGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
570 580 2.464459 CGGATTCTGCTGGGTTCGC 61.464 63.158 0.00 0.00 0.00 4.70
571 581 2.115291 GGATTCTGCTGGGTTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
583 593 2.467566 GGTTCGCCCTTTAGTTCAGA 57.532 50.000 0.00 0.00 0.00 3.27
584 594 2.987232 GGTTCGCCCTTTAGTTCAGAT 58.013 47.619 0.00 0.00 0.00 2.90
585 595 3.344515 GGTTCGCCCTTTAGTTCAGATT 58.655 45.455 0.00 0.00 0.00 2.40
586 596 3.374367 GGTTCGCCCTTTAGTTCAGATTC 59.626 47.826 0.00 0.00 0.00 2.52
587 597 4.254492 GTTCGCCCTTTAGTTCAGATTCT 58.746 43.478 0.00 0.00 0.00 2.40
588 598 3.861840 TCGCCCTTTAGTTCAGATTCTG 58.138 45.455 7.38 7.38 0.00 3.02
589 599 2.352960 CGCCCTTTAGTTCAGATTCTGC 59.647 50.000 8.89 0.00 0.00 4.26
590 600 3.615155 GCCCTTTAGTTCAGATTCTGCT 58.385 45.455 8.89 4.15 0.00 4.24
591 601 3.376546 GCCCTTTAGTTCAGATTCTGCTG 59.623 47.826 8.89 0.00 37.24 4.41
592 602 3.376546 CCCTTTAGTTCAGATTCTGCTGC 59.623 47.826 8.89 0.00 35.86 5.25
593 603 3.063180 CCTTTAGTTCAGATTCTGCTGCG 59.937 47.826 8.89 0.00 35.86 5.18
594 604 3.592898 TTAGTTCAGATTCTGCTGCGA 57.407 42.857 8.89 0.00 35.86 5.10
595 605 2.462456 AGTTCAGATTCTGCTGCGAA 57.538 45.000 8.89 8.80 35.86 4.70
596 606 2.983229 AGTTCAGATTCTGCTGCGAAT 58.017 42.857 15.81 15.81 36.38 3.34
597 607 2.935201 AGTTCAGATTCTGCTGCGAATC 59.065 45.455 25.54 25.54 46.07 2.52
598 608 1.945387 TCAGATTCTGCTGCGAATCC 58.055 50.000 27.40 17.41 46.61 3.01
599 609 0.580578 CAGATTCTGCTGCGAATCCG 59.419 55.000 27.40 20.30 46.61 4.18
600 610 0.176680 AGATTCTGCTGCGAATCCGT 59.823 50.000 27.40 16.53 46.61 4.69
601 611 1.009829 GATTCTGCTGCGAATCCGTT 58.990 50.000 23.93 6.51 42.07 4.44
602 612 0.729116 ATTCTGCTGCGAATCCGTTG 59.271 50.000 11.89 0.00 38.24 4.10
603 613 0.320334 TTCTGCTGCGAATCCGTTGA 60.320 50.000 0.00 0.00 38.24 3.18
604 614 0.108186 TCTGCTGCGAATCCGTTGAT 60.108 50.000 0.00 0.00 38.24 2.57
605 615 1.136110 TCTGCTGCGAATCCGTTGATA 59.864 47.619 0.00 0.00 38.24 2.15
606 616 1.933181 CTGCTGCGAATCCGTTGATAA 59.067 47.619 0.00 0.00 38.24 1.75
607 617 2.351418 CTGCTGCGAATCCGTTGATAAA 59.649 45.455 0.00 0.00 38.24 1.40
608 618 2.744741 TGCTGCGAATCCGTTGATAAAA 59.255 40.909 0.00 0.00 38.24 1.52
609 619 3.181511 TGCTGCGAATCCGTTGATAAAAG 60.182 43.478 0.00 0.00 38.24 2.27
610 620 3.354397 CTGCGAATCCGTTGATAAAAGC 58.646 45.455 0.00 0.00 38.24 3.51
611 621 2.744741 TGCGAATCCGTTGATAAAAGCA 59.255 40.909 0.00 0.00 38.24 3.91
612 622 3.181511 TGCGAATCCGTTGATAAAAGCAG 60.182 43.478 0.00 0.00 38.24 4.24
613 623 3.063452 GCGAATCCGTTGATAAAAGCAGA 59.937 43.478 0.00 0.00 38.24 4.26
614 624 4.436852 GCGAATCCGTTGATAAAAGCAGAA 60.437 41.667 0.00 0.00 38.24 3.02
615 625 5.022021 CGAATCCGTTGATAAAAGCAGAAC 58.978 41.667 0.00 0.00 0.00 3.01
616 626 4.965119 ATCCGTTGATAAAAGCAGAACC 57.035 40.909 0.00 0.00 0.00 3.62
617 627 3.745799 TCCGTTGATAAAAGCAGAACCA 58.254 40.909 0.00 0.00 0.00 3.67
618 628 4.138290 TCCGTTGATAAAAGCAGAACCAA 58.862 39.130 0.00 0.00 0.00 3.67
619 629 4.580995 TCCGTTGATAAAAGCAGAACCAAA 59.419 37.500 0.00 0.00 0.00 3.28
620 630 4.679654 CCGTTGATAAAAGCAGAACCAAAC 59.320 41.667 0.00 0.00 0.00 2.93
621 631 5.277825 CGTTGATAAAAGCAGAACCAAACA 58.722 37.500 0.00 0.00 0.00 2.83
622 632 5.399301 CGTTGATAAAAGCAGAACCAAACAG 59.601 40.000 0.00 0.00 0.00 3.16
623 633 5.452078 TGATAAAAGCAGAACCAAACAGG 57.548 39.130 0.00 0.00 45.67 4.00
624 634 4.280677 TGATAAAAGCAGAACCAAACAGGG 59.719 41.667 0.00 0.00 43.89 4.45
625 635 0.752658 AAAGCAGAACCAAACAGGGC 59.247 50.000 0.00 0.00 43.89 5.19
626 636 1.115326 AAGCAGAACCAAACAGGGCC 61.115 55.000 0.00 0.00 43.89 5.80
687 1929 7.069455 ACAAGTTAAATTTTGTGCTCCCTAAGT 59.931 33.333 0.00 0.00 36.26 2.24
880 2321 3.247411 TGTGACAAACTATGTGCGTTGAG 59.753 43.478 0.00 0.00 44.12 3.02
881 2322 3.493129 GTGACAAACTATGTGCGTTGAGA 59.507 43.478 0.00 0.00 44.12 3.27
882 2323 3.493129 TGACAAACTATGTGCGTTGAGAC 59.507 43.478 0.00 0.00 44.12 3.36
883 2324 3.728845 ACAAACTATGTGCGTTGAGACT 58.271 40.909 0.00 0.00 41.93 3.24
884 2325 4.127171 ACAAACTATGTGCGTTGAGACTT 58.873 39.130 0.00 0.00 41.93 3.01
885 2326 4.024893 ACAAACTATGTGCGTTGAGACTTG 60.025 41.667 0.00 0.00 41.93 3.16
886 2327 3.660501 ACTATGTGCGTTGAGACTTGA 57.339 42.857 0.00 0.00 0.00 3.02
887 2328 3.579709 ACTATGTGCGTTGAGACTTGAG 58.420 45.455 0.00 0.00 0.00 3.02
926 2367 0.248012 ACGAACCACTCACACACACA 59.752 50.000 0.00 0.00 0.00 3.72
927 2368 0.650512 CGAACCACTCACACACACAC 59.349 55.000 0.00 0.00 0.00 3.82
1056 2512 4.082523 TTCCCTCTTGCCGCTCCG 62.083 66.667 0.00 0.00 0.00 4.63
1125 2590 6.759272 TCCCATGATACTTAGCAGTGTATTC 58.241 40.000 0.00 0.00 34.06 1.75
1149 2614 3.977999 TCTCTTCCCCAGTTAGTTTTCCA 59.022 43.478 0.00 0.00 0.00 3.53
1208 2673 2.095853 CGTCAGATACCATGTTGTTGCC 59.904 50.000 0.00 0.00 0.00 4.52
1284 2757 2.378038 TGGCTTATGGTTGAATCAGGC 58.622 47.619 0.00 0.00 0.00 4.85
1299 2773 3.619900 TCAGGCCTGGATACTATGTCT 57.380 47.619 32.23 0.00 37.61 3.41
1355 2966 6.213397 AGGCAGCATGTGGTGATAACTATATA 59.787 38.462 15.69 0.00 45.66 0.86
1395 3079 1.474077 GGATCGCAGATGCCAAGTTTT 59.526 47.619 0.00 0.00 45.12 2.43
1515 3199 3.004752 AGCCAGCGAACCAGATAATTT 57.995 42.857 0.00 0.00 0.00 1.82
1548 3232 4.859245 GCAACCATTAAGCTACAAGAAAGC 59.141 41.667 0.00 0.00 40.40 3.51
1551 3235 6.648879 ACCATTAAGCTACAAGAAAGCAAA 57.351 33.333 0.00 0.00 42.62 3.68
1557 3241 4.672409 AGCTACAAGAAAGCAAACAACAC 58.328 39.130 0.00 0.00 42.62 3.32
1664 3348 0.535797 CTCCCTTCCCGTAACTGTCC 59.464 60.000 0.00 0.00 0.00 4.02
1837 3521 1.848400 CCATGGGATGGGAGCATCA 59.152 57.895 2.85 0.00 46.86 3.07
1875 3559 3.184628 TGAGACCCCATTGATGAGAAGT 58.815 45.455 0.00 0.00 0.00 3.01
1876 3560 3.588842 TGAGACCCCATTGATGAGAAGTT 59.411 43.478 0.00 0.00 0.00 2.66
1877 3561 3.944015 GAGACCCCATTGATGAGAAGTTG 59.056 47.826 0.00 0.00 0.00 3.16
1878 3562 3.588842 AGACCCCATTGATGAGAAGTTGA 59.411 43.478 0.00 0.00 0.00 3.18
1879 3563 3.944015 GACCCCATTGATGAGAAGTTGAG 59.056 47.826 0.00 0.00 0.00 3.02
1882 3566 5.012239 CCCCATTGATGAGAAGTTGAGAAA 58.988 41.667 0.00 0.00 0.00 2.52
1884 3568 6.015180 CCCCATTGATGAGAAGTTGAGAAAAA 60.015 38.462 0.00 0.00 0.00 1.94
1934 3629 1.482278 GCGACAAATTTCGGTTGCAA 58.518 45.000 13.43 0.00 42.67 4.08
1946 3641 1.797348 CGGTTGCAACTGGTGACAAAC 60.797 52.381 27.61 7.67 42.06 2.93
1951 3646 1.065551 GCAACTGGTGACAAACTGGAC 59.934 52.381 0.00 0.00 42.06 4.02
1973 3668 6.888088 GGACAGGGTTTTAGTTACATGGTTAT 59.112 38.462 0.00 0.00 0.00 1.89
1975 3670 7.463431 ACAGGGTTTTAGTTACATGGTTATGA 58.537 34.615 0.00 0.00 37.73 2.15
1976 3671 8.113462 ACAGGGTTTTAGTTACATGGTTATGAT 58.887 33.333 0.00 0.00 37.73 2.45
1977 3672 8.966868 CAGGGTTTTAGTTACATGGTTATGATT 58.033 33.333 0.00 0.00 37.73 2.57
1978 3673 9.541884 AGGGTTTTAGTTACATGGTTATGATTT 57.458 29.630 0.00 0.00 37.73 2.17
1986 3681 9.920946 AGTTACATGGTTATGATTTATGAAGGT 57.079 29.630 0.00 0.00 37.73 3.50
1990 3685 6.449635 TGGTTATGATTTATGAAGGTGTGC 57.550 37.500 0.00 0.00 0.00 4.57
2009 3704 6.701400 GGTGTGCATAATTGATAAAATGGGTC 59.299 38.462 0.00 0.00 0.00 4.46
2049 3744 6.753913 TCATAGAATGTTAGGCCAGATTCT 57.246 37.500 16.67 16.67 38.43 2.40
2050 3745 6.763355 TCATAGAATGTTAGGCCAGATTCTC 58.237 40.000 16.13 1.91 36.69 2.87
2051 3746 4.429854 AGAATGTTAGGCCAGATTCTCC 57.570 45.455 5.01 0.00 30.91 3.71
2052 3747 2.918712 ATGTTAGGCCAGATTCTCCG 57.081 50.000 5.01 0.00 0.00 4.63
2053 3748 1.860641 TGTTAGGCCAGATTCTCCGA 58.139 50.000 5.01 0.00 0.00 4.55
2110 3805 5.666969 TTTGTAATTCTCCACGTCAACAG 57.333 39.130 0.00 0.00 0.00 3.16
2117 3812 1.227527 CCACGTCAACAGCAGACCA 60.228 57.895 0.00 0.00 32.41 4.02
2174 3869 0.733566 TGAATAACCCGACGCGTCAC 60.734 55.000 35.71 14.00 0.00 3.67
2187 3882 3.392440 GTCACGGTCGTGTGCGTC 61.392 66.667 20.63 6.54 45.55 5.19
2269 3964 0.108138 ACCGGTGAGCTAGCAATCAC 60.108 55.000 22.61 22.61 44.10 3.06
2270 3965 0.176680 CCGGTGAGCTAGCAATCACT 59.823 55.000 26.92 4.51 44.23 3.41
2284 3979 1.183030 ATCACTGGTTGGACGGACGA 61.183 55.000 0.00 0.00 0.00 4.20
2285 3980 1.372997 CACTGGTTGGACGGACGAG 60.373 63.158 0.00 0.00 0.00 4.18
2353 4347 1.362406 GGCGCCACTCTCTTAGCAAC 61.362 60.000 24.80 0.00 0.00 4.17
2354 4348 0.390472 GCGCCACTCTCTTAGCAACT 60.390 55.000 0.00 0.00 0.00 3.16
2355 4349 1.634702 CGCCACTCTCTTAGCAACTC 58.365 55.000 0.00 0.00 0.00 3.01
2358 4352 3.732471 CGCCACTCTCTTAGCAACTCTAC 60.732 52.174 0.00 0.00 0.00 2.59
2363 4357 6.151312 CCACTCTCTTAGCAACTCTACAGTTA 59.849 42.308 0.00 0.00 41.24 2.24
2520 4620 2.490217 CTTCTCCGCCGTGATCGT 59.510 61.111 0.00 0.00 35.01 3.73
2576 4676 2.525629 TCGCCAAGACACCCTCCA 60.526 61.111 0.00 0.00 0.00 3.86
2580 4680 2.046892 CAAGACACCCTCCAGCCG 60.047 66.667 0.00 0.00 0.00 5.52
2600 4715 4.753877 CGACGTCGCTCCGCAAGA 62.754 66.667 26.59 0.00 43.02 3.02
2601 4716 2.876645 GACGTCGCTCCGCAAGAG 60.877 66.667 0.00 0.00 46.29 2.85
2899 5014 3.484547 GCCACGCTTAACCCGTCG 61.485 66.667 0.00 0.00 36.69 5.12
3192 5307 1.268899 CCTATCCATCGGGTCGTACAC 59.731 57.143 0.00 0.00 34.93 2.90
3323 5438 2.109799 CGGAGTATGGCAGCCTGG 59.890 66.667 14.15 0.00 0.00 4.45
3334 5449 1.522355 CAGCCTGGCGACGATCATT 60.522 57.895 13.96 0.00 0.00 2.57
3472 5587 1.672356 CTTCAAGGGCCAGGTGTCG 60.672 63.158 6.18 0.00 0.00 4.35
3474 5589 1.701031 TTCAAGGGCCAGGTGTCGAA 61.701 55.000 6.18 0.00 0.00 3.71
3508 5623 4.147322 GTGGACATGGCGTTCGCG 62.147 66.667 10.94 0.00 44.73 5.87
3532 5647 2.358003 GCGACACTCAAGCTGGCT 60.358 61.111 0.00 0.00 0.00 4.75
3535 5650 1.372683 GACACTCAAGCTGGCTCCA 59.627 57.895 0.00 0.00 0.00 3.86
3658 5773 2.500369 GTCTACGACGTCGCGCAA 60.500 61.111 35.92 18.55 44.43 4.85
3703 5818 0.450983 GCTGCAGCTGAAGAATGGAC 59.549 55.000 31.33 2.11 38.21 4.02
3740 5855 1.527611 ATCGCATGCATGGACCCAG 60.528 57.895 27.34 7.89 0.00 4.45
3897 6044 7.757526 TCAACCACTGTATGTATTGTAAATGC 58.242 34.615 0.00 0.00 0.00 3.56
3938 6094 7.764617 TGGCCTAAAGATTTGGGATATGATAA 58.235 34.615 11.50 0.00 40.88 1.75
4081 6237 8.831715 AAGTATTCAATTGGTTTGGATGTTTC 57.168 30.769 5.42 0.00 34.26 2.78
4100 6256 1.008538 GCCGCCTCCAATAATTGCG 60.009 57.895 0.00 0.00 44.47 4.85
4153 6309 9.644993 GTTTTGGATGTTTTAATACAGTTTTGC 57.355 29.630 5.03 0.00 0.00 3.68
4154 6310 9.606631 TTTTGGATGTTTTAATACAGTTTTGCT 57.393 25.926 5.03 0.00 0.00 3.91
4187 6343 9.144747 CATCTAGATGTGCCATAAGTATTACAC 57.855 37.037 22.42 0.00 31.36 2.90
4188 6344 8.245195 TCTAGATGTGCCATAAGTATTACACA 57.755 34.615 0.00 0.00 41.73 3.72
4194 6350 8.887036 TGTGCCATAAGTATTACACATCTAAG 57.113 34.615 0.00 0.00 33.41 2.18
4195 6351 8.482943 TGTGCCATAAGTATTACACATCTAAGT 58.517 33.333 0.00 0.00 33.41 2.24
4196 6352 8.979574 GTGCCATAAGTATTACACATCTAAGTC 58.020 37.037 0.00 0.00 30.46 3.01
4197 6353 8.148351 TGCCATAAGTATTACACATCTAAGTCC 58.852 37.037 0.00 0.00 30.46 3.85
4198 6354 8.368668 GCCATAAGTATTACACATCTAAGTCCT 58.631 37.037 0.00 0.00 30.46 3.85
4218 6374 9.698309 AAGTCCTATATCATTGATCTTACGTTG 57.302 33.333 1.55 0.00 0.00 4.10
4219 6375 9.078990 AGTCCTATATCATTGATCTTACGTTGA 57.921 33.333 1.55 0.00 0.00 3.18
4220 6376 9.347934 GTCCTATATCATTGATCTTACGTTGAG 57.652 37.037 1.55 0.00 0.00 3.02
4221 6377 9.297037 TCCTATATCATTGATCTTACGTTGAGA 57.703 33.333 1.55 0.00 0.00 3.27
4225 6381 6.812481 TCATTGATCTTACGTTGAGATTCG 57.188 37.500 13.35 5.46 34.13 3.34
4226 6382 6.330278 TCATTGATCTTACGTTGAGATTCGT 58.670 36.000 13.35 0.00 42.82 3.85
4227 6383 6.253512 TCATTGATCTTACGTTGAGATTCGTG 59.746 38.462 13.35 11.92 40.50 4.35
4228 6384 5.055642 TGATCTTACGTTGAGATTCGTGT 57.944 39.130 13.35 0.00 40.50 4.49
4229 6385 4.857037 TGATCTTACGTTGAGATTCGTGTG 59.143 41.667 13.35 0.00 40.50 3.82
4230 6386 3.571571 TCTTACGTTGAGATTCGTGTGG 58.428 45.455 0.00 0.00 40.50 4.17
4231 6387 3.253921 TCTTACGTTGAGATTCGTGTGGA 59.746 43.478 0.00 0.00 40.50 4.02
4232 6388 2.743636 ACGTTGAGATTCGTGTGGAT 57.256 45.000 0.00 0.00 38.85 3.41
4233 6389 3.861276 ACGTTGAGATTCGTGTGGATA 57.139 42.857 0.00 0.00 38.85 2.59
4234 6390 4.386867 ACGTTGAGATTCGTGTGGATAT 57.613 40.909 0.00 0.00 38.85 1.63
4235 6391 4.755411 ACGTTGAGATTCGTGTGGATATT 58.245 39.130 0.00 0.00 38.85 1.28
4236 6392 5.175859 ACGTTGAGATTCGTGTGGATATTT 58.824 37.500 0.00 0.00 38.85 1.40
4237 6393 5.642063 ACGTTGAGATTCGTGTGGATATTTT 59.358 36.000 0.00 0.00 38.85 1.82
4238 6394 6.183360 ACGTTGAGATTCGTGTGGATATTTTC 60.183 38.462 0.00 0.00 38.85 2.29
4239 6395 6.036083 CGTTGAGATTCGTGTGGATATTTTCT 59.964 38.462 0.00 0.00 0.00 2.52
4240 6396 7.413000 CGTTGAGATTCGTGTGGATATTTTCTT 60.413 37.037 0.00 0.00 0.00 2.52
4241 6397 7.921786 TGAGATTCGTGTGGATATTTTCTTT 57.078 32.000 0.00 0.00 0.00 2.52
4242 6398 8.335532 TGAGATTCGTGTGGATATTTTCTTTT 57.664 30.769 0.00 0.00 0.00 2.27
4243 6399 8.792633 TGAGATTCGTGTGGATATTTTCTTTTT 58.207 29.630 0.00 0.00 0.00 1.94
4267 6423 6.713762 TTTTCTTTTCCTCTTCATGCTTGA 57.286 33.333 0.00 0.00 0.00 3.02
4268 6424 6.906157 TTTCTTTTCCTCTTCATGCTTGAT 57.094 33.333 2.75 0.00 0.00 2.57
4269 6425 6.906157 TTCTTTTCCTCTTCATGCTTGATT 57.094 33.333 2.75 0.00 0.00 2.57
4270 6426 6.506500 TCTTTTCCTCTTCATGCTTGATTC 57.493 37.500 2.75 0.00 0.00 2.52
4271 6427 6.005823 TCTTTTCCTCTTCATGCTTGATTCA 58.994 36.000 2.75 0.00 0.00 2.57
4272 6428 5.633830 TTTCCTCTTCATGCTTGATTCAC 57.366 39.130 2.75 0.00 0.00 3.18
4273 6429 4.564782 TCCTCTTCATGCTTGATTCACT 57.435 40.909 2.75 0.00 0.00 3.41
4274 6430 4.511527 TCCTCTTCATGCTTGATTCACTC 58.488 43.478 2.75 0.00 0.00 3.51
4275 6431 4.019950 TCCTCTTCATGCTTGATTCACTCA 60.020 41.667 2.75 0.00 0.00 3.41
4276 6432 4.094590 CCTCTTCATGCTTGATTCACTCAC 59.905 45.833 2.75 0.00 32.17 3.51
4277 6433 4.903054 TCTTCATGCTTGATTCACTCACT 58.097 39.130 2.75 0.00 32.17 3.41
4278 6434 5.311265 TCTTCATGCTTGATTCACTCACTT 58.689 37.500 2.75 0.00 32.17 3.16
4279 6435 6.466812 TCTTCATGCTTGATTCACTCACTTA 58.533 36.000 2.75 0.00 32.17 2.24
4280 6436 6.592994 TCTTCATGCTTGATTCACTCACTTAG 59.407 38.462 2.75 0.00 32.17 2.18
4281 6437 6.041423 TCATGCTTGATTCACTCACTTAGA 57.959 37.500 0.00 0.00 32.17 2.10
4282 6438 6.647229 TCATGCTTGATTCACTCACTTAGAT 58.353 36.000 0.00 0.00 32.17 1.98
4283 6439 6.537660 TCATGCTTGATTCACTCACTTAGATG 59.462 38.462 0.00 0.00 32.17 2.90
4284 6440 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
4285 6441 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
4286 6442 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
4287 6443 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
4288 6444 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
4289 6445 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
4290 6446 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
4291 6447 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
4292 6448 7.601073 TTCACTCACTTAGATGTGCAATAAG 57.399 36.000 0.00 0.00 37.81 1.73
4293 6449 6.701340 TCACTCACTTAGATGTGCAATAAGT 58.299 36.000 8.35 8.35 39.67 2.24
4294 6450 7.836842 TCACTCACTTAGATGTGCAATAAGTA 58.163 34.615 12.07 4.39 37.59 2.24
4295 6451 7.976175 TCACTCACTTAGATGTGCAATAAGTAG 59.024 37.037 12.07 11.87 37.59 2.57
4296 6452 7.223582 CACTCACTTAGATGTGCAATAAGTAGG 59.776 40.741 12.07 10.62 37.59 3.18
4297 6453 6.582636 TCACTTAGATGTGCAATAAGTAGGG 58.417 40.000 12.07 0.00 37.59 3.53
4298 6454 5.237344 CACTTAGATGTGCAATAAGTAGGGC 59.763 44.000 12.07 0.00 37.59 5.19
4299 6455 3.931907 AGATGTGCAATAAGTAGGGCA 57.068 42.857 0.00 0.00 0.00 5.36
4304 6460 3.931907 TGCAATAAGTAGGGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
4306 6462 4.960938 TGCAATAAGTAGGGCACATCTAG 58.039 43.478 0.00 0.00 0.00 2.43
4307 6463 4.653801 TGCAATAAGTAGGGCACATCTAGA 59.346 41.667 0.00 0.00 0.00 2.43
4308 6464 5.307976 TGCAATAAGTAGGGCACATCTAGAT 59.692 40.000 0.00 0.00 0.00 1.98
4309 6465 6.496911 TGCAATAAGTAGGGCACATCTAGATA 59.503 38.462 4.54 0.00 0.00 1.98
4310 6466 7.180946 TGCAATAAGTAGGGCACATCTAGATAT 59.819 37.037 4.54 0.00 0.00 1.63
4311 6467 7.493971 GCAATAAGTAGGGCACATCTAGATATG 59.506 40.741 6.64 6.64 0.00 1.78
4312 6468 5.413309 AAGTAGGGCACATCTAGATATGC 57.587 43.478 24.83 24.83 40.32 3.14
4319 6475 5.004922 GCACATCTAGATATGCCCTAGAC 57.995 47.826 22.87 0.00 43.57 2.59
4320 6476 4.464244 GCACATCTAGATATGCCCTAGACA 59.536 45.833 22.87 0.00 43.57 3.41
4321 6477 5.128499 GCACATCTAGATATGCCCTAGACAT 59.872 44.000 22.87 0.00 43.57 3.06
4322 6478 6.351711 GCACATCTAGATATGCCCTAGACATT 60.352 42.308 22.87 0.00 43.57 2.71
4323 6479 7.264221 CACATCTAGATATGCCCTAGACATTC 58.736 42.308 4.54 3.10 43.57 2.67
4324 6480 6.382570 ACATCTAGATATGCCCTAGACATTCC 59.617 42.308 4.54 0.00 43.57 3.01
4325 6481 6.159172 TCTAGATATGCCCTAGACATTCCT 57.841 41.667 3.89 4.88 38.08 3.36
4381 6537 6.745450 CGAGTGAACAAACACACTAAAACATT 59.255 34.615 0.00 0.00 45.54 2.71
4439 6597 7.782049 ACATCTTATATTTGTGAACGGAGAGA 58.218 34.615 0.00 0.00 0.00 3.10
4440 6598 7.923344 ACATCTTATATTTGTGAACGGAGAGAG 59.077 37.037 0.00 0.00 0.00 3.20
4447 6605 3.418047 TGTGAACGGAGAGAGTACATGA 58.582 45.455 0.00 0.00 0.00 3.07
4457 6615 5.193663 AGAGAGTACATGAATGGATGACG 57.806 43.478 0.00 0.00 0.00 4.35
4495 6658 1.228228 GGAGCTGCCCATGATGGAA 59.772 57.895 14.26 0.00 40.96 3.53
4607 6770 7.951347 AGAATTGCAATCTTCTTGATAAGGT 57.049 32.000 13.38 0.00 34.45 3.50
4622 6785 9.550406 TCTTGATAAGGTTTCGTAGAAGAAAAA 57.450 29.630 0.00 0.00 45.90 1.94
4624 6787 8.319143 TGATAAGGTTTCGTAGAAGAAAAAGG 57.681 34.615 0.00 0.00 45.90 3.11
4625 6788 7.389607 TGATAAGGTTTCGTAGAAGAAAAAGGG 59.610 37.037 0.00 0.00 45.90 3.95
4630 6793 6.039047 GGTTTCGTAGAAGAAAAAGGGAAACT 59.961 38.462 11.56 0.00 45.90 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.288395 GGACACCAAAGCATCAAACCAG 60.288 50.000 0.00 0.00 0.00 4.00
39 40 1.301401 CGTCGCCTCCACCTGAAAA 60.301 57.895 0.00 0.00 0.00 2.29
74 75 0.037303 ATGAGGTCACCACAGGCAAG 59.963 55.000 0.00 0.00 0.00 4.01
75 76 0.036732 GATGAGGTCACCACAGGCAA 59.963 55.000 0.00 0.00 0.00 4.52
89 90 3.492309 CGAGGGGTCTTGAGATTGATGAG 60.492 52.174 0.00 0.00 0.00 2.90
108 109 0.455410 CTGGAAGAGACTGAGCCGAG 59.545 60.000 0.00 0.00 34.07 4.63
136 137 1.959042 CATGCACACATACTCTCCCC 58.041 55.000 0.00 0.00 33.67 4.81
139 140 4.627611 AAATGCATGCACACATACTCTC 57.372 40.909 25.37 0.00 33.67 3.20
148 149 2.357323 CACCCGTATAAATGCATGCACA 59.643 45.455 25.37 11.91 0.00 4.57
149 150 2.616376 TCACCCGTATAAATGCATGCAC 59.384 45.455 25.37 8.20 0.00 4.57
157 158 7.870954 CACATACATACACTCACCCGTATAAAT 59.129 37.037 0.00 0.00 0.00 1.40
164 165 3.520290 ACACATACATACACTCACCCG 57.480 47.619 0.00 0.00 0.00 5.28
165 166 6.569179 AAAAACACATACATACACTCACCC 57.431 37.500 0.00 0.00 0.00 4.61
180 181 2.921634 TGCACACGCTTAAAAACACA 57.078 40.000 0.00 0.00 39.64 3.72
189 190 5.559427 TTTTGATACATATGCACACGCTT 57.441 34.783 1.58 0.00 39.64 4.68
216 226 5.645056 TTGGGGCTATCTGAATGTTGATA 57.355 39.130 0.00 0.00 0.00 2.15
224 234 6.297010 GGATAATGGTATTGGGGCTATCTGAA 60.297 42.308 0.00 0.00 0.00 3.02
261 271 5.111293 GCACCATTTGGAAGTTGATATTGG 58.889 41.667 3.01 0.00 38.94 3.16
279 289 3.795688 AGAAAGAGAAATCAGGCACCA 57.204 42.857 0.00 0.00 0.00 4.17
318 328 4.978083 ACATGGATGCAGAGTTCATTTC 57.022 40.909 0.00 0.00 0.00 2.17
323 333 2.821969 ACCAAACATGGATGCAGAGTTC 59.178 45.455 8.01 0.00 0.00 3.01
327 337 1.811965 CGAACCAAACATGGATGCAGA 59.188 47.619 1.10 0.00 0.00 4.26
335 345 2.217750 TCCACAGTCGAACCAAACATG 58.782 47.619 0.00 0.00 0.00 3.21
336 346 2.631160 TCCACAGTCGAACCAAACAT 57.369 45.000 0.00 0.00 0.00 2.71
337 347 2.631160 ATCCACAGTCGAACCAAACA 57.369 45.000 0.00 0.00 0.00 2.83
338 348 3.564225 AGAAATCCACAGTCGAACCAAAC 59.436 43.478 0.00 0.00 0.00 2.93
339 349 3.815809 AGAAATCCACAGTCGAACCAAA 58.184 40.909 0.00 0.00 0.00 3.28
340 350 3.485463 AGAAATCCACAGTCGAACCAA 57.515 42.857 0.00 0.00 0.00 3.67
341 351 4.610605 TTAGAAATCCACAGTCGAACCA 57.389 40.909 0.00 0.00 0.00 3.67
342 352 5.617087 GCTTTTAGAAATCCACAGTCGAACC 60.617 44.000 0.00 0.00 0.00 3.62
343 353 5.049680 TGCTTTTAGAAATCCACAGTCGAAC 60.050 40.000 0.00 0.00 0.00 3.95
344 354 5.060506 TGCTTTTAGAAATCCACAGTCGAA 58.939 37.500 0.00 0.00 0.00 3.71
345 355 4.637276 TGCTTTTAGAAATCCACAGTCGA 58.363 39.130 0.00 0.00 0.00 4.20
346 356 4.670221 GCTGCTTTTAGAAATCCACAGTCG 60.670 45.833 0.00 0.00 0.00 4.18
347 357 4.457257 AGCTGCTTTTAGAAATCCACAGTC 59.543 41.667 0.00 0.00 0.00 3.51
348 358 4.217118 CAGCTGCTTTTAGAAATCCACAGT 59.783 41.667 0.00 0.00 0.00 3.55
349 359 4.217118 ACAGCTGCTTTTAGAAATCCACAG 59.783 41.667 15.27 0.00 0.00 3.66
350 360 4.022935 CACAGCTGCTTTTAGAAATCCACA 60.023 41.667 15.27 0.00 0.00 4.17
351 361 4.216257 TCACAGCTGCTTTTAGAAATCCAC 59.784 41.667 15.27 0.00 0.00 4.02
352 362 4.397420 TCACAGCTGCTTTTAGAAATCCA 58.603 39.130 15.27 0.00 0.00 3.41
353 363 5.376854 TTCACAGCTGCTTTTAGAAATCC 57.623 39.130 15.27 0.00 0.00 3.01
354 364 7.222611 TGTTTTTCACAGCTGCTTTTAGAAATC 59.777 33.333 15.27 10.67 0.00 2.17
355 365 7.041107 TGTTTTTCACAGCTGCTTTTAGAAAT 58.959 30.769 15.27 0.00 0.00 2.17
356 366 6.393990 TGTTTTTCACAGCTGCTTTTAGAAA 58.606 32.000 15.27 11.50 0.00 2.52
357 367 5.960113 TGTTTTTCACAGCTGCTTTTAGAA 58.040 33.333 15.27 5.96 0.00 2.10
358 368 5.574891 TGTTTTTCACAGCTGCTTTTAGA 57.425 34.783 15.27 0.00 0.00 2.10
359 369 5.878261 CTGTTTTTCACAGCTGCTTTTAG 57.122 39.130 15.27 0.00 46.70 1.85
370 380 4.527509 TTTTCCACAGCTGTTTTTCACA 57.472 36.364 18.94 0.00 0.00 3.58
371 381 4.688413 TGTTTTTCCACAGCTGTTTTTCAC 59.312 37.500 18.94 10.45 0.00 3.18
372 382 4.887748 TGTTTTTCCACAGCTGTTTTTCA 58.112 34.783 18.94 7.58 0.00 2.69
373 383 5.408299 AGTTGTTTTTCCACAGCTGTTTTTC 59.592 36.000 18.94 5.01 36.90 2.29
374 384 5.179182 CAGTTGTTTTTCCACAGCTGTTTTT 59.821 36.000 18.94 0.00 45.86 1.94
375 385 4.690280 CAGTTGTTTTTCCACAGCTGTTTT 59.310 37.500 18.94 0.00 45.86 2.43
376 386 4.244862 CAGTTGTTTTTCCACAGCTGTTT 58.755 39.130 18.94 0.00 45.86 2.83
377 387 3.848726 CAGTTGTTTTTCCACAGCTGTT 58.151 40.909 18.94 0.00 45.86 3.16
378 388 3.508744 CAGTTGTTTTTCCACAGCTGT 57.491 42.857 15.25 15.25 45.86 4.40
380 390 2.166254 CCACAGTTGTTTTTCCACAGCT 59.834 45.455 0.00 0.00 38.65 4.24
381 391 2.165437 TCCACAGTTGTTTTTCCACAGC 59.835 45.455 0.00 0.00 0.00 4.40
382 392 4.448537 TTCCACAGTTGTTTTTCCACAG 57.551 40.909 0.00 0.00 0.00 3.66
383 393 4.873746 TTTCCACAGTTGTTTTTCCACA 57.126 36.364 0.00 0.00 0.00 4.17
384 394 6.106003 AGATTTTCCACAGTTGTTTTTCCAC 58.894 36.000 0.00 0.00 0.00 4.02
385 395 6.293004 AGATTTTCCACAGTTGTTTTTCCA 57.707 33.333 0.00 0.00 0.00 3.53
386 396 8.764287 CATTAGATTTTCCACAGTTGTTTTTCC 58.236 33.333 0.00 0.00 0.00 3.13
387 397 9.313118 ACATTAGATTTTCCACAGTTGTTTTTC 57.687 29.630 0.00 0.00 0.00 2.29
388 398 9.097257 CACATTAGATTTTCCACAGTTGTTTTT 57.903 29.630 0.00 0.00 0.00 1.94
389 399 8.474025 TCACATTAGATTTTCCACAGTTGTTTT 58.526 29.630 0.00 0.00 0.00 2.43
390 400 8.006298 TCACATTAGATTTTCCACAGTTGTTT 57.994 30.769 0.00 0.00 0.00 2.83
391 401 7.581213 TCACATTAGATTTTCCACAGTTGTT 57.419 32.000 0.00 0.00 0.00 2.83
392 402 7.581213 TTCACATTAGATTTTCCACAGTTGT 57.419 32.000 0.00 0.00 0.00 3.32
393 403 8.870160 TTTTCACATTAGATTTTCCACAGTTG 57.130 30.769 0.00 0.00 0.00 3.16
394 404 9.533253 CTTTTTCACATTAGATTTTCCACAGTT 57.467 29.630 0.00 0.00 0.00 3.16
395 405 8.912988 TCTTTTTCACATTAGATTTTCCACAGT 58.087 29.630 0.00 0.00 0.00 3.55
396 406 9.918630 ATCTTTTTCACATTAGATTTTCCACAG 57.081 29.630 0.00 0.00 0.00 3.66
397 407 9.695526 CATCTTTTTCACATTAGATTTTCCACA 57.304 29.630 0.00 0.00 0.00 4.17
398 408 9.696917 ACATCTTTTTCACATTAGATTTTCCAC 57.303 29.630 0.00 0.00 0.00 4.02
404 414 9.739276 TGACCTACATCTTTTTCACATTAGATT 57.261 29.630 0.00 0.00 0.00 2.40
405 415 9.911788 ATGACCTACATCTTTTTCACATTAGAT 57.088 29.630 0.00 0.00 33.46 1.98
406 416 9.739276 AATGACCTACATCTTTTTCACATTAGA 57.261 29.630 0.00 0.00 38.38 2.10
409 419 8.090214 CCAAATGACCTACATCTTTTTCACATT 58.910 33.333 0.00 0.00 38.38 2.71
410 420 7.605449 CCAAATGACCTACATCTTTTTCACAT 58.395 34.615 0.00 0.00 38.38 3.21
411 421 6.516527 GCCAAATGACCTACATCTTTTTCACA 60.517 38.462 0.00 0.00 38.38 3.58
412 422 5.863935 GCCAAATGACCTACATCTTTTTCAC 59.136 40.000 0.00 0.00 38.38 3.18
413 423 5.538053 TGCCAAATGACCTACATCTTTTTCA 59.462 36.000 0.00 0.00 38.38 2.69
414 424 6.024552 TGCCAAATGACCTACATCTTTTTC 57.975 37.500 0.00 0.00 38.38 2.29
415 425 6.418057 TTGCCAAATGACCTACATCTTTTT 57.582 33.333 0.00 0.00 38.38 1.94
416 426 6.223120 GTTTGCCAAATGACCTACATCTTTT 58.777 36.000 0.00 0.00 38.38 2.27
417 427 5.279456 GGTTTGCCAAATGACCTACATCTTT 60.279 40.000 0.00 0.00 34.76 2.52
418 428 4.220602 GGTTTGCCAAATGACCTACATCTT 59.779 41.667 0.00 0.00 34.76 2.40
419 429 3.763897 GGTTTGCCAAATGACCTACATCT 59.236 43.478 0.00 0.00 34.76 2.90
420 430 3.509575 TGGTTTGCCAAATGACCTACATC 59.490 43.478 0.00 0.00 42.83 3.06
421 431 3.505386 TGGTTTGCCAAATGACCTACAT 58.495 40.909 0.00 0.00 42.83 2.29
422 432 2.890311 CTGGTTTGCCAAATGACCTACA 59.110 45.455 0.00 0.00 45.51 2.74
423 433 2.352715 GCTGGTTTGCCAAATGACCTAC 60.353 50.000 0.00 0.00 45.51 3.18
424 434 1.892474 GCTGGTTTGCCAAATGACCTA 59.108 47.619 0.00 0.00 45.51 3.08
425 435 0.681175 GCTGGTTTGCCAAATGACCT 59.319 50.000 0.00 0.00 45.51 3.85
426 436 0.681175 AGCTGGTTTGCCAAATGACC 59.319 50.000 0.00 0.00 45.51 4.02
427 437 1.340889 TCAGCTGGTTTGCCAAATGAC 59.659 47.619 15.13 0.00 45.51 3.06
428 438 1.702182 TCAGCTGGTTTGCCAAATGA 58.298 45.000 15.13 0.00 45.51 2.57
429 439 2.754946 ATCAGCTGGTTTGCCAAATG 57.245 45.000 15.13 0.00 45.51 2.32
430 440 3.164268 TGTATCAGCTGGTTTGCCAAAT 58.836 40.909 15.13 0.00 45.51 2.32
431 441 2.557924 CTGTATCAGCTGGTTTGCCAAA 59.442 45.455 15.13 0.00 45.51 3.28
432 442 2.161855 CTGTATCAGCTGGTTTGCCAA 58.838 47.619 15.13 0.00 45.51 4.52
433 443 1.825090 CTGTATCAGCTGGTTTGCCA 58.175 50.000 15.13 1.11 43.73 4.92
444 454 6.309737 GCCAAAATCTGAAAAAGCTGTATCAG 59.690 38.462 13.84 13.84 40.46 2.90
445 455 6.015180 AGCCAAAATCTGAAAAAGCTGTATCA 60.015 34.615 0.00 0.00 0.00 2.15
446 456 6.393171 AGCCAAAATCTGAAAAAGCTGTATC 58.607 36.000 0.00 0.00 0.00 2.24
447 457 6.350629 AGCCAAAATCTGAAAAAGCTGTAT 57.649 33.333 0.00 0.00 0.00 2.29
448 458 5.562696 CGAGCCAAAATCTGAAAAAGCTGTA 60.563 40.000 0.00 0.00 0.00 2.74
449 459 4.625028 GAGCCAAAATCTGAAAAAGCTGT 58.375 39.130 0.00 0.00 0.00 4.40
450 460 3.671928 CGAGCCAAAATCTGAAAAAGCTG 59.328 43.478 0.00 0.00 0.00 4.24
451 461 3.858503 GCGAGCCAAAATCTGAAAAAGCT 60.859 43.478 0.00 0.00 0.00 3.74
452 462 2.409715 GCGAGCCAAAATCTGAAAAAGC 59.590 45.455 0.00 0.00 0.00 3.51
453 463 3.641648 TGCGAGCCAAAATCTGAAAAAG 58.358 40.909 0.00 0.00 0.00 2.27
454 464 3.641648 CTGCGAGCCAAAATCTGAAAAA 58.358 40.909 0.00 0.00 0.00 1.94
455 465 2.607771 GCTGCGAGCCAAAATCTGAAAA 60.608 45.455 0.00 0.00 34.48 2.29
456 466 1.068333 GCTGCGAGCCAAAATCTGAAA 60.068 47.619 0.00 0.00 34.48 2.69
457 467 0.523072 GCTGCGAGCCAAAATCTGAA 59.477 50.000 0.00 0.00 34.48 3.02
458 468 1.638388 CGCTGCGAGCCAAAATCTGA 61.638 55.000 18.66 0.00 38.18 3.27
459 469 1.226211 CGCTGCGAGCCAAAATCTG 60.226 57.895 18.66 0.00 38.18 2.90
460 470 2.401766 CCGCTGCGAGCCAAAATCT 61.402 57.895 25.45 0.00 38.18 2.40
461 471 1.922135 TTCCGCTGCGAGCCAAAATC 61.922 55.000 25.45 0.00 38.18 2.17
462 472 1.315257 ATTCCGCTGCGAGCCAAAAT 61.315 50.000 25.45 9.75 38.18 1.82
463 473 1.922135 GATTCCGCTGCGAGCCAAAA 61.922 55.000 25.45 7.87 38.18 2.44
464 474 2.359850 ATTCCGCTGCGAGCCAAA 60.360 55.556 25.45 9.62 38.18 3.28
465 475 2.819595 GATTCCGCTGCGAGCCAA 60.820 61.111 25.45 10.62 38.18 4.52
466 476 4.081185 TGATTCCGCTGCGAGCCA 62.081 61.111 25.45 12.43 38.18 4.75
467 477 2.985512 ATCTGATTCCGCTGCGAGCC 62.986 60.000 25.45 9.92 38.18 4.70
468 478 1.156645 AATCTGATTCCGCTGCGAGC 61.157 55.000 25.45 7.94 38.02 5.03
469 479 1.293924 AAATCTGATTCCGCTGCGAG 58.706 50.000 25.45 12.55 0.00 5.03
470 480 1.398041 CAAAATCTGATTCCGCTGCGA 59.602 47.619 25.45 4.43 0.00 5.10
471 481 1.532505 CCAAAATCTGATTCCGCTGCG 60.533 52.381 16.34 16.34 0.00 5.18
472 482 1.745087 TCCAAAATCTGATTCCGCTGC 59.255 47.619 2.92 0.00 0.00 5.25
473 483 4.418392 CTTTCCAAAATCTGATTCCGCTG 58.582 43.478 2.92 0.03 0.00 5.18
474 484 3.119352 GCTTTCCAAAATCTGATTCCGCT 60.119 43.478 2.92 0.00 0.00 5.52
475 485 3.182182 GCTTTCCAAAATCTGATTCCGC 58.818 45.455 2.92 0.00 0.00 5.54
476 486 4.168760 GTGCTTTCCAAAATCTGATTCCG 58.831 43.478 2.92 0.00 0.00 4.30
477 487 4.168760 CGTGCTTTCCAAAATCTGATTCC 58.831 43.478 2.92 0.00 0.00 3.01
478 488 4.798574 ACGTGCTTTCCAAAATCTGATTC 58.201 39.130 2.92 0.00 0.00 2.52
479 489 4.321230 GGACGTGCTTTCCAAAATCTGATT 60.321 41.667 0.00 0.00 32.82 2.57
480 490 3.191371 GGACGTGCTTTCCAAAATCTGAT 59.809 43.478 0.00 0.00 32.82 2.90
481 491 2.552315 GGACGTGCTTTCCAAAATCTGA 59.448 45.455 0.00 0.00 32.82 3.27
482 492 2.554032 AGGACGTGCTTTCCAAAATCTG 59.446 45.455 2.68 0.00 35.33 2.90
483 493 2.554032 CAGGACGTGCTTTCCAAAATCT 59.446 45.455 6.93 0.00 35.33 2.40
484 494 2.351738 CCAGGACGTGCTTTCCAAAATC 60.352 50.000 6.93 0.00 35.33 2.17
485 495 1.613437 CCAGGACGTGCTTTCCAAAAT 59.387 47.619 6.93 0.00 35.33 1.82
486 496 1.028905 CCAGGACGTGCTTTCCAAAA 58.971 50.000 6.93 0.00 35.33 2.44
487 497 0.821711 CCCAGGACGTGCTTTCCAAA 60.822 55.000 6.93 0.00 35.33 3.28
488 498 1.228124 CCCAGGACGTGCTTTCCAA 60.228 57.895 6.93 0.00 35.33 3.53
489 499 2.429930 CCCAGGACGTGCTTTCCA 59.570 61.111 6.93 0.00 35.33 3.53
490 500 3.056328 GCCCAGGACGTGCTTTCC 61.056 66.667 6.93 0.00 0.00 3.13
491 501 2.032681 AGCCCAGGACGTGCTTTC 59.967 61.111 6.93 0.00 29.17 2.62
492 502 2.281761 CAGCCCAGGACGTGCTTT 60.282 61.111 6.93 0.00 31.77 3.51
496 506 2.743928 GAAGCAGCCCAGGACGTG 60.744 66.667 0.00 0.00 0.00 4.49
497 507 4.021925 GGAAGCAGCCCAGGACGT 62.022 66.667 0.00 0.00 0.00 4.34
510 520 3.923017 AATCTGAACCAAAAGCGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
511 521 4.098654 TCAAAATCTGAACCAAAAGCGGAA 59.901 37.500 0.00 0.00 0.00 4.30
512 522 3.634448 TCAAAATCTGAACCAAAAGCGGA 59.366 39.130 0.00 0.00 0.00 5.54
513 523 3.735746 GTCAAAATCTGAACCAAAAGCGG 59.264 43.478 0.00 0.00 35.22 5.52
514 524 4.358851 TGTCAAAATCTGAACCAAAAGCG 58.641 39.130 0.00 0.00 35.22 4.68
515 525 5.276348 CGTTGTCAAAATCTGAACCAAAAGC 60.276 40.000 0.00 0.00 35.22 3.51
516 526 6.033341 TCGTTGTCAAAATCTGAACCAAAAG 58.967 36.000 0.00 0.00 35.22 2.27
517 527 5.955488 TCGTTGTCAAAATCTGAACCAAAA 58.045 33.333 0.00 0.00 35.22 2.44
518 528 5.568685 TCGTTGTCAAAATCTGAACCAAA 57.431 34.783 0.00 0.00 35.22 3.28
519 529 5.568685 TTCGTTGTCAAAATCTGAACCAA 57.431 34.783 0.00 0.00 35.22 3.67
520 530 5.766150 ATTCGTTGTCAAAATCTGAACCA 57.234 34.783 0.00 0.00 35.22 3.67
521 531 6.918022 AGAAATTCGTTGTCAAAATCTGAACC 59.082 34.615 0.00 0.00 35.22 3.62
522 532 7.914537 AGAAATTCGTTGTCAAAATCTGAAC 57.085 32.000 0.00 0.00 35.22 3.18
523 533 9.051679 TCTAGAAATTCGTTGTCAAAATCTGAA 57.948 29.630 0.00 0.00 35.22 3.02
524 534 8.601845 TCTAGAAATTCGTTGTCAAAATCTGA 57.398 30.769 0.00 0.00 0.00 3.27
525 535 9.831737 ATTCTAGAAATTCGTTGTCAAAATCTG 57.168 29.630 9.71 0.00 0.00 2.90
527 537 8.989767 CGATTCTAGAAATTCGTTGTCAAAATC 58.010 33.333 16.76 2.06 0.00 2.17
528 538 7.962918 CCGATTCTAGAAATTCGTTGTCAAAAT 59.037 33.333 21.11 0.00 0.00 1.82
529 539 7.171848 TCCGATTCTAGAAATTCGTTGTCAAAA 59.828 33.333 21.11 0.00 0.00 2.44
530 540 6.647481 TCCGATTCTAGAAATTCGTTGTCAAA 59.353 34.615 21.11 0.00 0.00 2.69
531 541 6.160684 TCCGATTCTAGAAATTCGTTGTCAA 58.839 36.000 21.11 3.66 0.00 3.18
532 542 5.716094 TCCGATTCTAGAAATTCGTTGTCA 58.284 37.500 21.11 3.73 0.00 3.58
533 543 6.830114 ATCCGATTCTAGAAATTCGTTGTC 57.170 37.500 21.11 7.73 0.00 3.18
534 544 7.235430 GAATCCGATTCTAGAAATTCGTTGT 57.765 36.000 21.11 9.82 36.37 3.32
548 558 1.943340 GAACCCAGCAGAATCCGATTC 59.057 52.381 12.51 12.51 39.56 2.52
549 559 1.743772 CGAACCCAGCAGAATCCGATT 60.744 52.381 0.00 0.00 0.00 3.34
550 560 0.179073 CGAACCCAGCAGAATCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
551 561 1.218047 CGAACCCAGCAGAATCCGA 59.782 57.895 0.00 0.00 0.00 4.55
552 562 2.464459 GCGAACCCAGCAGAATCCG 61.464 63.158 0.00 0.00 34.19 4.18
553 563 2.115291 GGCGAACCCAGCAGAATCC 61.115 63.158 0.00 0.00 36.08 3.01
554 564 3.502572 GGCGAACCCAGCAGAATC 58.497 61.111 0.00 0.00 36.08 2.52
564 574 2.467566 TCTGAACTAAAGGGCGAACC 57.532 50.000 0.00 0.00 40.67 3.62
565 575 4.093556 CAGAATCTGAACTAAAGGGCGAAC 59.906 45.833 3.77 0.00 32.44 3.95
566 576 4.253685 CAGAATCTGAACTAAAGGGCGAA 58.746 43.478 3.77 0.00 32.44 4.70
567 577 3.861840 CAGAATCTGAACTAAAGGGCGA 58.138 45.455 3.77 0.00 32.44 5.54
568 578 2.352960 GCAGAATCTGAACTAAAGGGCG 59.647 50.000 15.38 0.00 32.44 6.13
569 579 3.376546 CAGCAGAATCTGAACTAAAGGGC 59.623 47.826 15.38 0.00 36.19 5.19
570 580 3.376546 GCAGCAGAATCTGAACTAAAGGG 59.623 47.826 15.38 0.00 36.19 3.95
571 581 3.063180 CGCAGCAGAATCTGAACTAAAGG 59.937 47.826 15.38 0.00 36.19 3.11
572 582 3.928992 TCGCAGCAGAATCTGAACTAAAG 59.071 43.478 15.38 0.00 36.19 1.85
573 583 3.925379 TCGCAGCAGAATCTGAACTAAA 58.075 40.909 15.38 0.00 36.19 1.85
574 584 3.592898 TCGCAGCAGAATCTGAACTAA 57.407 42.857 15.38 0.00 36.19 2.24
575 585 3.592898 TTCGCAGCAGAATCTGAACTA 57.407 42.857 15.38 0.00 36.19 2.24
576 586 2.462456 TTCGCAGCAGAATCTGAACT 57.538 45.000 15.38 0.00 36.19 3.01
583 593 0.729116 CAACGGATTCGCAGCAGAAT 59.271 50.000 10.91 10.91 42.92 2.40
584 594 0.320334 TCAACGGATTCGCAGCAGAA 60.320 50.000 0.00 0.00 40.63 3.02
585 595 0.108186 ATCAACGGATTCGCAGCAGA 60.108 50.000 0.00 0.00 40.63 4.26
586 596 1.570813 TATCAACGGATTCGCAGCAG 58.429 50.000 0.00 0.00 40.63 4.24
587 597 2.017138 TTATCAACGGATTCGCAGCA 57.983 45.000 0.00 0.00 40.63 4.41
588 598 3.354397 CTTTTATCAACGGATTCGCAGC 58.646 45.455 0.00 0.00 40.63 5.25
589 599 3.181511 TGCTTTTATCAACGGATTCGCAG 60.182 43.478 0.00 0.00 40.63 5.18
590 600 2.744741 TGCTTTTATCAACGGATTCGCA 59.255 40.909 0.00 0.00 40.63 5.10
591 601 3.063452 TCTGCTTTTATCAACGGATTCGC 59.937 43.478 0.00 0.00 40.63 4.70
592 602 4.857871 TCTGCTTTTATCAACGGATTCG 57.142 40.909 0.00 0.00 43.02 3.34
593 603 5.106317 TGGTTCTGCTTTTATCAACGGATTC 60.106 40.000 0.00 0.00 34.89 2.52
594 604 4.764823 TGGTTCTGCTTTTATCAACGGATT 59.235 37.500 0.00 0.00 34.89 3.01
595 605 4.331968 TGGTTCTGCTTTTATCAACGGAT 58.668 39.130 0.00 0.00 37.55 4.18
596 606 3.745799 TGGTTCTGCTTTTATCAACGGA 58.254 40.909 0.00 0.00 0.00 4.69
597 607 4.497473 TTGGTTCTGCTTTTATCAACGG 57.503 40.909 0.00 0.00 0.00 4.44
598 608 5.277825 TGTTTGGTTCTGCTTTTATCAACG 58.722 37.500 0.00 0.00 0.00 4.10
599 609 5.691754 CCTGTTTGGTTCTGCTTTTATCAAC 59.308 40.000 0.00 0.00 0.00 3.18
600 610 5.221422 CCCTGTTTGGTTCTGCTTTTATCAA 60.221 40.000 0.00 0.00 0.00 2.57
601 611 4.280677 CCCTGTTTGGTTCTGCTTTTATCA 59.719 41.667 0.00 0.00 0.00 2.15
602 612 4.809673 CCCTGTTTGGTTCTGCTTTTATC 58.190 43.478 0.00 0.00 0.00 1.75
603 613 3.006859 GCCCTGTTTGGTTCTGCTTTTAT 59.993 43.478 0.00 0.00 0.00 1.40
604 614 2.364002 GCCCTGTTTGGTTCTGCTTTTA 59.636 45.455 0.00 0.00 0.00 1.52
605 615 1.138859 GCCCTGTTTGGTTCTGCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
606 616 0.752658 GCCCTGTTTGGTTCTGCTTT 59.247 50.000 0.00 0.00 0.00 3.51
607 617 1.115326 GGCCCTGTTTGGTTCTGCTT 61.115 55.000 0.00 0.00 0.00 3.91
608 618 1.531602 GGCCCTGTTTGGTTCTGCT 60.532 57.895 0.00 0.00 0.00 4.24
609 619 1.398958 TTGGCCCTGTTTGGTTCTGC 61.399 55.000 0.00 0.00 0.00 4.26
610 620 0.675633 CTTGGCCCTGTTTGGTTCTG 59.324 55.000 0.00 0.00 0.00 3.02
611 621 0.261696 ACTTGGCCCTGTTTGGTTCT 59.738 50.000 0.00 0.00 0.00 3.01
612 622 0.389025 CACTTGGCCCTGTTTGGTTC 59.611 55.000 0.00 0.00 0.00 3.62
613 623 0.325203 ACACTTGGCCCTGTTTGGTT 60.325 50.000 0.00 0.00 0.00 3.67
614 624 0.553819 TACACTTGGCCCTGTTTGGT 59.446 50.000 0.00 0.00 0.00 3.67
615 625 1.339929 GTTACACTTGGCCCTGTTTGG 59.660 52.381 0.00 0.00 0.00 3.28
616 626 2.034558 CAGTTACACTTGGCCCTGTTTG 59.965 50.000 0.00 0.00 0.00 2.93
617 627 2.306847 CAGTTACACTTGGCCCTGTTT 58.693 47.619 0.00 0.00 0.00 2.83
618 628 1.981256 CAGTTACACTTGGCCCTGTT 58.019 50.000 0.00 0.00 0.00 3.16
619 629 0.537371 GCAGTTACACTTGGCCCTGT 60.537 55.000 0.00 1.09 0.00 4.00
620 630 1.244019 GGCAGTTACACTTGGCCCTG 61.244 60.000 0.00 0.00 32.76 4.45
621 631 1.074951 GGCAGTTACACTTGGCCCT 59.925 57.895 0.00 0.00 32.76 5.19
622 632 2.332654 CGGCAGTTACACTTGGCCC 61.333 63.158 0.00 0.00 34.74 5.80
623 633 0.320946 TACGGCAGTTACACTTGGCC 60.321 55.000 0.00 0.00 34.85 5.36
624 634 1.076332 CTACGGCAGTTACACTTGGC 58.924 55.000 0.00 0.00 0.00 4.52
625 635 2.736144 TCTACGGCAGTTACACTTGG 57.264 50.000 0.00 0.00 0.00 3.61
626 636 3.789756 CGTATCTACGGCAGTTACACTTG 59.210 47.826 0.00 0.00 45.30 3.16
657 667 5.691754 GGAGCACAAAATTTAACTTGTCTGG 59.308 40.000 0.00 0.00 33.51 3.86
687 1929 5.536260 TGCATAATTTGTGCACTGCTTTTA 58.464 33.333 22.22 12.20 46.76 1.52
730 1972 1.580845 AATGTGGCGCTGCTTCTCAC 61.581 55.000 7.64 5.47 0.00 3.51
823 2264 6.377996 TCTGAGTTTATCCACCCAAATGATTG 59.622 38.462 0.00 0.00 36.25 2.67
880 2321 2.492484 TCTTTCCGGTAGCTCTCAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
881 2322 2.526432 TCTTTCCGGTAGCTCTCAAGT 58.474 47.619 0.00 0.00 0.00 3.16
882 2323 3.810310 ATCTTTCCGGTAGCTCTCAAG 57.190 47.619 0.00 0.00 0.00 3.02
883 2324 3.118738 GGAATCTTTCCGGTAGCTCTCAA 60.119 47.826 0.00 0.00 40.59 3.02
884 2325 2.431057 GGAATCTTTCCGGTAGCTCTCA 59.569 50.000 0.00 0.00 40.59 3.27
885 2326 3.100658 GGAATCTTTCCGGTAGCTCTC 57.899 52.381 0.00 0.00 40.59 3.20
926 2367 6.686632 GCTTGTTCTTGTGGCCTCTATATAGT 60.687 42.308 3.32 0.00 0.00 2.12
927 2368 5.698545 GCTTGTTCTTGTGGCCTCTATATAG 59.301 44.000 3.32 3.10 0.00 1.31
1056 2512 1.077429 GTTGGTGATCTCCCTGGCC 60.077 63.158 11.24 0.00 0.00 5.36
1107 2563 9.405587 GAAGAGATGAATACACTGCTAAGTATC 57.594 37.037 0.00 0.00 33.79 2.24
1113 2569 4.345257 GGGGAAGAGATGAATACACTGCTA 59.655 45.833 0.00 0.00 0.00 3.49
1125 2590 4.944317 GGAAAACTAACTGGGGAAGAGATG 59.056 45.833 0.00 0.00 0.00 2.90
1170 2635 8.963130 GTATCTGACGATGATGAAAACTTCTAG 58.037 37.037 0.00 0.00 0.00 2.43
1208 2673 4.514066 GGTTCAAGTTAGGTTGTGTACTGG 59.486 45.833 0.00 0.00 0.00 4.00
1284 2757 8.567285 AAAGAACAAAAGACATAGTATCCAGG 57.433 34.615 0.00 0.00 0.00 4.45
1299 2773 6.377146 AGCTCTACAACTCCAAAAGAACAAAA 59.623 34.615 0.00 0.00 0.00 2.44
1355 2966 3.139397 TCCATGGTTAGTGAAGGTGGTTT 59.861 43.478 12.58 0.00 0.00 3.27
1515 3199 4.706476 AGCTTAATGGTTGCTATCTTTGCA 59.294 37.500 0.00 0.00 38.80 4.08
1548 3232 5.890334 TCTTTTCCTAAGCAGTGTTGTTTG 58.110 37.500 0.00 0.00 0.00 2.93
1551 3235 5.036117 TCTCTTTTCCTAAGCAGTGTTGT 57.964 39.130 0.00 0.00 0.00 3.32
1557 3241 4.693095 GTCACCTTCTCTTTTCCTAAGCAG 59.307 45.833 0.00 0.00 0.00 4.24
1664 3348 6.480524 TGGAGTAAACTGAATTGATTCGTG 57.519 37.500 0.00 0.00 39.62 4.35
1776 3460 4.081476 TCTCATTTGTCTCCACATCACGAT 60.081 41.667 0.00 0.00 30.55 3.73
1778 3462 3.588955 TCTCATTTGTCTCCACATCACG 58.411 45.455 0.00 0.00 30.55 4.35
1837 3521 0.994247 TCATCCAGGCACCAACAGAT 59.006 50.000 0.00 0.00 0.00 2.90
1934 3629 1.134098 CCTGTCCAGTTTGTCACCAGT 60.134 52.381 0.00 0.00 0.00 4.00
1946 3641 4.700213 CCATGTAACTAAAACCCTGTCCAG 59.300 45.833 0.00 0.00 0.00 3.86
1951 3646 7.931578 TCATAACCATGTAACTAAAACCCTG 57.068 36.000 0.00 0.00 33.57 4.45
1973 3668 8.291191 TCAATTATGCACACCTTCATAAATCA 57.709 30.769 0.00 0.00 38.28 2.57
1979 3674 9.537192 CATTTTATCAATTATGCACACCTTCAT 57.463 29.630 0.00 0.00 0.00 2.57
1980 3675 7.980662 CCATTTTATCAATTATGCACACCTTCA 59.019 33.333 0.00 0.00 0.00 3.02
1986 3681 6.096141 ACGACCCATTTTATCAATTATGCACA 59.904 34.615 0.00 0.00 0.00 4.57
1990 3685 7.702386 TGTCACGACCCATTTTATCAATTATG 58.298 34.615 0.00 0.00 0.00 1.90
2009 3704 6.389622 TCTATGAAGACGAATTTTGTCACG 57.610 37.500 17.14 0.00 38.83 4.35
2049 3744 3.797039 CAGATTAGCAAACAGGATCGGA 58.203 45.455 0.00 0.00 0.00 4.55
2050 3745 2.289002 GCAGATTAGCAAACAGGATCGG 59.711 50.000 0.00 0.00 0.00 4.18
2051 3746 3.002042 CAGCAGATTAGCAAACAGGATCG 59.998 47.826 0.00 0.00 36.85 3.69
2052 3747 4.034975 GTCAGCAGATTAGCAAACAGGATC 59.965 45.833 0.00 0.00 36.85 3.36
2053 3748 3.944015 GTCAGCAGATTAGCAAACAGGAT 59.056 43.478 0.00 0.00 36.85 3.24
2110 3805 0.179108 GGTACGGAGTCATGGTCTGC 60.179 60.000 0.00 0.00 43.93 4.26
2117 3812 5.836898 TGGATATAAGTTGGTACGGAGTCAT 59.163 40.000 0.00 0.00 43.93 3.06
2187 3882 0.511221 CGGACTGCACGTAACTTTGG 59.489 55.000 0.00 0.00 0.00 3.28
2211 3906 0.465287 GGCCCCTGCATATTTTGGTG 59.535 55.000 0.00 0.00 40.13 4.17
2269 3964 1.592400 TAGCTCGTCCGTCCAACCAG 61.592 60.000 0.00 0.00 0.00 4.00
2270 3965 1.592400 CTAGCTCGTCCGTCCAACCA 61.592 60.000 0.00 0.00 0.00 3.67
2284 3979 1.836166 TGCTTTCAGATGGAGCTAGCT 59.164 47.619 19.45 19.45 37.32 3.32
2285 3980 2.322355 TGCTTTCAGATGGAGCTAGC 57.678 50.000 6.62 6.62 37.32 3.42
2328 4312 1.617018 AAGAGAGTGGCGCCTGCATA 61.617 55.000 29.70 2.88 45.35 3.14
2334 4318 1.079127 TTGCTAAGAGAGTGGCGCC 60.079 57.895 22.73 22.73 0.00 6.53
2374 4468 6.037726 TCGCATAATGTGTTATTACTCACGT 58.962 36.000 0.00 0.00 37.38 4.49
2389 4486 3.509740 TGCAACAAACCATCGCATAATG 58.490 40.909 0.00 0.00 0.00 1.90
2391 4488 2.556189 ACTGCAACAAACCATCGCATAA 59.444 40.909 0.00 0.00 31.10 1.90
2746 4861 3.362399 CTGGAGCCACGTGAGCGAT 62.362 63.158 19.30 0.00 42.00 4.58
2971 5086 1.681327 GGAGACGGTGTCCCTGCTA 60.681 63.158 13.11 0.00 32.18 3.49
3164 5279 1.255667 CCGATGGATAGGTACCCGGG 61.256 65.000 22.25 22.25 31.79 5.73
3175 5290 2.121645 GGTGTACGACCCGATGGAT 58.878 57.895 0.00 0.00 39.10 3.41
3323 5438 1.209275 CCGGAGTCAATGATCGTCGC 61.209 60.000 0.00 0.00 0.00 5.19
3439 5554 0.037326 TGAAGCACGTGTCCAGGATC 60.037 55.000 18.38 5.99 0.00 3.36
3520 5635 3.076092 CCTGGAGCCAGCTTGAGT 58.924 61.111 11.07 0.00 42.35 3.41
3532 5647 1.375908 GATCAGCACGTTGCCTGGA 60.376 57.895 0.00 3.63 46.52 3.86
3535 5650 1.738099 GTCGATCAGCACGTTGCCT 60.738 57.895 6.39 0.00 46.52 4.75
3682 5797 0.963856 CCATTCTTCAGCTGCAGCCA 60.964 55.000 34.39 19.42 43.38 4.75
3703 5818 1.154225 GCAGGTGCGGTTCATTTCG 60.154 57.895 0.00 0.00 0.00 3.46
3740 5855 3.873910 TCTGGTTGCAGATTTACCTAGC 58.126 45.455 6.10 0.00 33.05 3.42
3897 6044 3.929094 AGGCCATTGCAATACTTTTGTG 58.071 40.909 12.53 0.00 40.13 3.33
3938 6094 6.554334 ACGCACATTAACAAGTCATAAGTT 57.446 33.333 0.00 0.00 0.00 2.66
4022 6178 4.797693 TTGCATTTGTCATTTGTTGCAG 57.202 36.364 0.00 0.00 40.72 4.41
4053 6209 7.160726 ACATCCAAACCAATTGAATACTTTGG 58.839 34.615 7.12 13.95 44.41 3.28
4058 6214 6.183360 GCGAAACATCCAAACCAATTGAATAC 60.183 38.462 7.12 0.00 41.85 1.89
4081 6237 1.008538 GCAATTATTGGAGGCGGCG 60.009 57.895 0.51 0.51 0.00 6.46
4170 6326 8.888579 ACTTAGATGTGTAATACTTATGGCAC 57.111 34.615 0.00 0.00 0.00 5.01
4171 6327 8.148351 GGACTTAGATGTGTAATACTTATGGCA 58.852 37.037 0.00 0.00 0.00 4.92
4172 6328 8.368668 AGGACTTAGATGTGTAATACTTATGGC 58.631 37.037 0.00 0.00 0.00 4.40
4192 6348 9.698309 CAACGTAAGATCAATGATATAGGACTT 57.302 33.333 12.27 6.56 43.62 3.01
4193 6349 9.078990 TCAACGTAAGATCAATGATATAGGACT 57.921 33.333 12.27 0.00 43.62 3.85
4194 6350 9.347934 CTCAACGTAAGATCAATGATATAGGAC 57.652 37.037 12.27 2.81 43.62 3.85
4195 6351 9.297037 TCTCAACGTAAGATCAATGATATAGGA 57.703 33.333 12.27 0.00 43.62 2.94
4199 6355 9.133627 CGAATCTCAACGTAAGATCAATGATAT 57.866 33.333 12.34 0.00 43.62 1.63
4200 6356 8.135529 ACGAATCTCAACGTAAGATCAATGATA 58.864 33.333 12.34 0.00 40.92 2.15
4201 6357 6.980978 ACGAATCTCAACGTAAGATCAATGAT 59.019 34.615 12.34 0.00 40.92 2.45
4202 6358 6.253512 CACGAATCTCAACGTAAGATCAATGA 59.746 38.462 12.34 0.00 40.76 2.57
4203 6359 6.035005 ACACGAATCTCAACGTAAGATCAATG 59.965 38.462 12.34 12.21 40.76 2.82
4204 6360 6.035005 CACACGAATCTCAACGTAAGATCAAT 59.965 38.462 12.34 0.02 40.76 2.57
4205 6361 5.344933 CACACGAATCTCAACGTAAGATCAA 59.655 40.000 12.34 0.00 40.76 2.57
4206 6362 4.857037 CACACGAATCTCAACGTAAGATCA 59.143 41.667 12.34 0.00 40.76 2.92
4207 6363 4.265556 CCACACGAATCTCAACGTAAGATC 59.734 45.833 12.34 6.90 40.76 2.75
4208 6364 4.082408 TCCACACGAATCTCAACGTAAGAT 60.082 41.667 7.39 7.39 40.76 2.40
4209 6365 3.253921 TCCACACGAATCTCAACGTAAGA 59.746 43.478 3.32 3.32 40.76 2.10
4210 6366 3.571571 TCCACACGAATCTCAACGTAAG 58.428 45.455 0.00 0.00 40.76 2.34
4211 6367 3.646611 TCCACACGAATCTCAACGTAA 57.353 42.857 0.00 0.00 40.76 3.18
4212 6368 3.861276 ATCCACACGAATCTCAACGTA 57.139 42.857 0.00 0.00 40.76 3.57
4213 6369 2.743636 ATCCACACGAATCTCAACGT 57.256 45.000 0.00 0.00 43.50 3.99
4214 6370 5.718649 AAATATCCACACGAATCTCAACG 57.281 39.130 0.00 0.00 0.00 4.10
4215 6371 7.308782 AGAAAATATCCACACGAATCTCAAC 57.691 36.000 0.00 0.00 0.00 3.18
4216 6372 7.921786 AAGAAAATATCCACACGAATCTCAA 57.078 32.000 0.00 0.00 0.00 3.02
4217 6373 7.921786 AAAGAAAATATCCACACGAATCTCA 57.078 32.000 0.00 0.00 0.00 3.27
4243 6399 7.111247 TCAAGCATGAAGAGGAAAAGAAAAA 57.889 32.000 0.00 0.00 30.99 1.94
4244 6400 6.713762 TCAAGCATGAAGAGGAAAAGAAAA 57.286 33.333 0.00 0.00 30.99 2.29
4245 6401 6.906157 ATCAAGCATGAAGAGGAAAAGAAA 57.094 33.333 0.00 0.00 39.49 2.52
4246 6402 6.491062 TGAATCAAGCATGAAGAGGAAAAGAA 59.509 34.615 0.00 0.00 39.49 2.52
4247 6403 6.005823 TGAATCAAGCATGAAGAGGAAAAGA 58.994 36.000 0.00 0.00 39.49 2.52
4248 6404 6.072064 AGTGAATCAAGCATGAAGAGGAAAAG 60.072 38.462 0.00 0.00 39.49 2.27
4249 6405 5.771666 AGTGAATCAAGCATGAAGAGGAAAA 59.228 36.000 0.00 0.00 39.49 2.29
4250 6406 5.319453 AGTGAATCAAGCATGAAGAGGAAA 58.681 37.500 0.00 0.00 39.49 3.13
4251 6407 4.914983 AGTGAATCAAGCATGAAGAGGAA 58.085 39.130 0.00 0.00 39.49 3.36
4252 6408 4.019950 TGAGTGAATCAAGCATGAAGAGGA 60.020 41.667 0.00 0.00 39.49 3.71
4253 6409 4.094590 GTGAGTGAATCAAGCATGAAGAGG 59.905 45.833 0.00 0.00 40.43 3.69
4254 6410 4.936411 AGTGAGTGAATCAAGCATGAAGAG 59.064 41.667 0.00 0.00 40.43 2.85
4255 6411 4.903054 AGTGAGTGAATCAAGCATGAAGA 58.097 39.130 0.00 0.00 40.43 2.87
4256 6412 5.624344 AAGTGAGTGAATCAAGCATGAAG 57.376 39.130 0.00 0.00 40.43 3.02
4257 6413 6.466812 TCTAAGTGAGTGAATCAAGCATGAA 58.533 36.000 0.00 0.00 40.43 2.57
4258 6414 6.041423 TCTAAGTGAGTGAATCAAGCATGA 57.959 37.500 0.00 0.00 40.43 3.07
4259 6415 6.315642 ACATCTAAGTGAGTGAATCAAGCATG 59.684 38.462 0.00 0.00 40.43 4.06
4260 6416 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
4261 6417 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
4262 6418 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
4263 6419 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
4264 6420 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
4265 6421 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
4266 6422 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
4267 6423 7.826252 ACTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 8.56 0.00 42.05 2.57
4268 6424 7.161404 ACTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 8.56 0.00 42.05 3.18
4269 6425 6.701340 ACTTATTGCACATCTAAGTGAGTGA 58.299 36.000 8.56 0.00 42.05 3.41
4270 6426 6.974932 ACTTATTGCACATCTAAGTGAGTG 57.025 37.500 8.56 0.00 42.05 3.51
4271 6427 7.268586 CCTACTTATTGCACATCTAAGTGAGT 58.731 38.462 15.31 0.00 42.05 3.41
4272 6428 6.703607 CCCTACTTATTGCACATCTAAGTGAG 59.296 42.308 15.31 9.27 42.05 3.51
4273 6429 6.582636 CCCTACTTATTGCACATCTAAGTGA 58.417 40.000 15.31 4.80 42.05 3.41
4274 6430 5.237344 GCCCTACTTATTGCACATCTAAGTG 59.763 44.000 15.31 0.00 42.37 3.16
4275 6431 5.104527 TGCCCTACTTATTGCACATCTAAGT 60.105 40.000 12.25 12.25 38.75 2.24
4276 6432 5.368145 TGCCCTACTTATTGCACATCTAAG 58.632 41.667 0.00 0.00 0.00 2.18
4277 6433 5.366482 TGCCCTACTTATTGCACATCTAA 57.634 39.130 0.00 0.00 0.00 2.10
4279 6435 3.931907 TGCCCTACTTATTGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
4284 6440 3.931907 AGATGTGCCCTACTTATTGCA 57.068 42.857 0.00 0.00 0.00 4.08
4285 6441 5.215252 TCTAGATGTGCCCTACTTATTGC 57.785 43.478 0.00 0.00 0.00 3.56
4286 6442 7.493971 GCATATCTAGATGTGCCCTACTTATTG 59.506 40.741 32.93 6.69 46.14 1.90
4287 6443 7.560368 GCATATCTAGATGTGCCCTACTTATT 58.440 38.462 32.93 0.41 46.14 1.40
4288 6444 7.118496 GCATATCTAGATGTGCCCTACTTAT 57.882 40.000 32.93 6.76 46.14 1.73
4289 6445 6.531503 GCATATCTAGATGTGCCCTACTTA 57.468 41.667 32.93 4.75 46.14 2.24
4290 6446 5.413309 GCATATCTAGATGTGCCCTACTT 57.587 43.478 32.93 1.64 46.14 2.24
4298 6454 6.788598 ATGTCTAGGGCATATCTAGATGTG 57.211 41.667 21.61 21.61 43.25 3.21
4299 6455 6.382570 GGAATGTCTAGGGCATATCTAGATGT 59.617 42.308 15.79 5.75 43.25 3.06
4300 6456 6.610830 AGGAATGTCTAGGGCATATCTAGATG 59.389 42.308 15.79 2.00 43.25 2.90
4301 6457 6.751050 AGGAATGTCTAGGGCATATCTAGAT 58.249 40.000 10.73 10.73 43.25 1.98
4302 6458 6.159172 AGGAATGTCTAGGGCATATCTAGA 57.841 41.667 0.00 0.00 40.38 2.43
4303 6459 8.546083 AATAGGAATGTCTAGGGCATATCTAG 57.454 38.462 0.00 0.00 36.46 2.43
4304 6460 8.917414 AAATAGGAATGTCTAGGGCATATCTA 57.083 34.615 0.00 2.46 0.00 1.98
4305 6461 7.821134 AAATAGGAATGTCTAGGGCATATCT 57.179 36.000 0.00 0.50 0.00 1.98
4306 6462 9.959721 TTAAAATAGGAATGTCTAGGGCATATC 57.040 33.333 0.00 0.00 0.00 1.63
4310 6466 9.739276 CATATTAAAATAGGAATGTCTAGGGCA 57.261 33.333 0.00 0.00 0.00 5.36
4311 6467 9.178758 CCATATTAAAATAGGAATGTCTAGGGC 57.821 37.037 0.00 0.00 0.00 5.19
4316 6472 9.574516 GTGGTCCATATTAAAATAGGAATGTCT 57.425 33.333 0.00 0.00 0.00 3.41
4317 6473 9.349713 TGTGGTCCATATTAAAATAGGAATGTC 57.650 33.333 0.00 0.00 0.00 3.06
4318 6474 9.881773 ATGTGGTCCATATTAAAATAGGAATGT 57.118 29.630 0.00 0.00 29.82 2.71
4322 6478 9.973661 CCATATGTGGTCCATATTAAAATAGGA 57.026 33.333 6.41 0.00 42.87 2.94
4323 6479 9.189156 CCCATATGTGGTCCATATTAAAATAGG 57.811 37.037 6.41 0.00 42.87 2.57
4324 6480 8.686334 GCCCATATGTGGTCCATATTAAAATAG 58.314 37.037 6.41 0.00 42.87 1.73
4325 6481 8.397957 AGCCCATATGTGGTCCATATTAAAATA 58.602 33.333 6.41 0.00 42.87 1.40
4340 6496 1.134699 ACTCGTGTCAGCCCATATGTG 60.135 52.381 1.24 0.00 0.00 3.21
4346 6502 1.069090 GTTCACTCGTGTCAGCCCA 59.931 57.895 0.00 0.00 0.00 5.36
4347 6503 0.531974 TTGTTCACTCGTGTCAGCCC 60.532 55.000 0.00 0.00 0.00 5.19
4439 6597 5.594725 AGTACTCGTCATCCATTCATGTACT 59.405 40.000 0.00 0.00 34.96 2.73
4440 6598 5.833082 AGTACTCGTCATCCATTCATGTAC 58.167 41.667 0.00 0.00 0.00 2.90
4457 6615 2.359531 CCCTCCACATCGAGAAGTACTC 59.640 54.545 0.00 0.00 41.79 2.59
4606 6769 7.024340 AGTTTCCCTTTTTCTTCTACGAAAC 57.976 36.000 0.00 0.00 38.59 2.78
4607 6770 8.615211 GTTAGTTTCCCTTTTTCTTCTACGAAA 58.385 33.333 0.00 0.00 0.00 3.46
4622 6785 8.778059 TCTCATATAATTGGTGTTAGTTTCCCT 58.222 33.333 0.00 0.00 0.00 4.20
4652 6815 9.713713 TCTGCATGTAAATGTAAACTAGTTGTA 57.286 29.630 9.34 1.43 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.