Multiple sequence alignment - TraesCS7D01G222500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G222500 chr7D 100.000 4512 0 0 1 4512 183773446 183777957 0.000000e+00 8333.0
1 TraesCS7D01G222500 chr7D 81.039 770 137 7 3136 3899 619993586 619994352 5.470000e-169 604.0
2 TraesCS7D01G222500 chr7D 92.556 403 27 3 180 581 397377657 397378057 4.290000e-160 575.0
3 TraesCS7D01G222500 chr7D 89.342 441 38 6 180 617 155748359 155748793 3.360000e-151 545.0
4 TraesCS7D01G222500 chr7D 88.945 398 38 3 2558 2952 183775913 183776307 2.070000e-133 486.0
5 TraesCS7D01G222500 chr7D 88.945 398 38 3 2468 2862 183776003 183776397 2.070000e-133 486.0
6 TraesCS7D01G222500 chr7D 95.604 182 8 0 1 182 511938679 511938860 4.830000e-75 292.0
7 TraesCS7D01G222500 chr7D 100.000 70 0 0 4869 4938 183778314 183778383 4.010000e-26 130.0
8 TraesCS7D01G222500 chr7A 92.864 2018 114 14 2513 4511 187431811 187429805 0.000000e+00 2902.0
9 TraesCS7D01G222500 chr7A 90.804 1381 117 8 1544 2923 187432730 187431359 0.000000e+00 1838.0
10 TraesCS7D01G222500 chr7A 90.335 807 43 15 629 1428 187433602 187432824 0.000000e+00 1026.0
11 TraesCS7D01G222500 chr7A 88.078 411 46 2 2468 2878 187431766 187431359 7.430000e-133 484.0
12 TraesCS7D01G222500 chr7A 85.714 350 47 1 2603 2952 187431811 187431465 2.810000e-97 366.0
13 TraesCS7D01G222500 chr7A 86.120 317 44 0 2474 2790 187431670 187431354 4.730000e-90 342.0
14 TraesCS7D01G222500 chr7A 98.571 70 1 0 4869 4938 187429744 187429675 1.870000e-24 124.0
15 TraesCS7D01G222500 chr7A 93.333 45 2 1 1796 1839 209401815 209401771 1.150000e-06 65.8
16 TraesCS7D01G222500 chr7A 89.583 48 2 2 4129 4175 296604348 296604303 1.920000e-04 58.4
17 TraesCS7D01G222500 chr7A 89.583 48 2 2 4129 4175 299568502 299568547 1.920000e-04 58.4
18 TraesCS7D01G222500 chr7B 94.102 1526 78 6 2558 4079 152493539 152495056 0.000000e+00 2309.0
19 TraesCS7D01G222500 chr7B 93.892 835 48 3 1542 2373 152492550 152493384 0.000000e+00 1256.0
20 TraesCS7D01G222500 chr7B 90.418 814 41 17 629 1432 152491672 152492458 0.000000e+00 1037.0
21 TraesCS7D01G222500 chr7B 90.476 525 39 7 2360 2878 152493433 152493952 0.000000e+00 682.0
22 TraesCS7D01G222500 chr7B 80.208 768 137 13 3136 3896 716539313 716538554 3.340000e-156 562.0
23 TraesCS7D01G222500 chr7B 88.026 309 32 5 2648 2952 152493539 152493846 1.310000e-95 361.0
24 TraesCS7D01G222500 chr7B 86.626 329 38 3 2468 2790 152493629 152493957 4.700000e-95 359.0
25 TraesCS7D01G222500 chr7B 80.112 357 62 5 2603 2953 152493539 152493892 1.760000e-64 257.0
26 TraesCS7D01G222500 chr7B 84.211 266 34 6 2438 2700 152493697 152493957 8.210000e-63 252.0
27 TraesCS7D01G222500 chr7B 84.583 240 29 5 2738 2973 152493539 152493774 1.070000e-56 231.0
28 TraesCS7D01G222500 chr3D 91.572 439 35 2 180 617 238592928 238592491 5.470000e-169 604.0
29 TraesCS7D01G222500 chr3D 89.462 446 33 9 180 617 126394487 126394926 7.220000e-153 551.0
30 TraesCS7D01G222500 chr3D 89.091 440 45 3 180 617 537402301 537402739 1.210000e-150 544.0
31 TraesCS7D01G222500 chr3D 87.955 440 47 5 180 617 278980495 278980930 9.480000e-142 514.0
32 TraesCS7D01G222500 chr3D 95.604 182 8 0 1 182 315769948 315769767 4.830000e-75 292.0
33 TraesCS7D01G222500 chr3D 95.604 182 8 0 1 182 402495994 402495813 4.830000e-75 292.0
34 TraesCS7D01G222500 chr3D 95.055 182 9 0 1 182 429312468 429312287 2.250000e-73 287.0
35 TraesCS7D01G222500 chr3D 100.000 33 0 0 4130 4162 107672334 107672302 1.480000e-05 62.1
36 TraesCS7D01G222500 chr2B 91.533 437 34 3 182 617 744831570 744832004 2.540000e-167 599.0
37 TraesCS7D01G222500 chr2B 88.864 440 46 3 180 617 82444797 82444359 5.620000e-149 538.0
38 TraesCS7D01G222500 chr2D 90.646 449 28 4 180 617 322501384 322501829 7.120000e-163 584.0
39 TraesCS7D01G222500 chr2D 100.000 36 0 0 4127 4162 99934138 99934103 3.190000e-07 67.6
40 TraesCS7D01G222500 chr2D 91.489 47 1 2 4130 4175 631794975 631795019 1.480000e-05 62.1
41 TraesCS7D01G222500 chr1D 92.786 402 28 1 180 581 236079949 236080349 9.210000e-162 580.0
42 TraesCS7D01G222500 chr1D 94.505 182 10 0 1 182 196082561 196082742 1.050000e-71 281.0
43 TraesCS7D01G222500 chr1D 94.505 182 10 0 1 182 236079025 236079206 1.050000e-71 281.0
44 TraesCS7D01G222500 chr1D 100.000 30 0 0 4129 4158 384141062 384141033 6.910000e-04 56.5
45 TraesCS7D01G222500 chr1D 90.476 42 1 2 4135 4175 482024334 482024295 9.000000e-03 52.8
46 TraesCS7D01G222500 chr5D 92.537 402 29 1 180 581 486002453 486002853 4.290000e-160 575.0
47 TraesCS7D01G222500 chr3A 90.476 441 32 8 180 617 467412953 467412520 1.540000e-159 573.0
48 TraesCS7D01G222500 chr1A 88.610 439 42 3 180 617 281655419 281655850 1.220000e-145 527.0
49 TraesCS7D01G222500 chr1A 100.000 29 0 0 4128 4156 1626805 1626777 2.000000e-03 54.7
50 TraesCS7D01G222500 chr1A 94.286 35 2 0 4128 4162 292769551 292769517 2.000000e-03 54.7
51 TraesCS7D01G222500 chr4D 95.055 182 9 0 1 182 35487848 35488029 2.250000e-73 287.0
52 TraesCS7D01G222500 chr4D 97.368 38 0 1 4130 4166 23406055 23406092 4.130000e-06 63.9
53 TraesCS7D01G222500 chr1B 95.055 182 9 0 1 182 550497636 550497455 2.250000e-73 287.0
54 TraesCS7D01G222500 chr1B 100.000 34 0 0 4129 4162 597194960 597194927 4.130000e-06 63.9
55 TraesCS7D01G222500 chr1B 89.362 47 4 1 4129 4175 488212891 488212846 1.920000e-04 58.4
56 TraesCS7D01G222500 chr5B 94.505 182 10 0 1 182 448292919 448292738 1.050000e-71 281.0
57 TraesCS7D01G222500 chr5B 82.796 93 16 0 4269 4361 282708042 282707950 3.170000e-12 84.2
58 TraesCS7D01G222500 chr5B 100.000 34 0 0 4129 4162 89809378 89809411 4.130000e-06 63.9
59 TraesCS7D01G222500 chr5A 97.436 39 1 0 4124 4162 593175437 593175399 3.190000e-07 67.6
60 TraesCS7D01G222500 chr5A 97.143 35 1 0 1793 1827 651563542 651563508 5.340000e-05 60.2
61 TraesCS7D01G222500 chr6D 100.000 34 0 0 4129 4162 69908860 69908827 4.130000e-06 63.9
62 TraesCS7D01G222500 chr6D 95.000 40 1 1 4128 4166 420745858 420745819 1.480000e-05 62.1
63 TraesCS7D01G222500 chr6D 97.059 34 1 0 4129 4162 410395586 410395553 1.920000e-04 58.4
64 TraesCS7D01G222500 chr6D 100.000 28 0 0 4129 4156 229431475 229431502 9.000000e-03 52.8
65 TraesCS7D01G222500 chr6B 91.667 48 1 2 4129 4175 617173820 617173775 4.130000e-06 63.9
66 TraesCS7D01G222500 chr6B 100.000 33 0 0 4130 4162 14811353 14811321 1.480000e-05 62.1
67 TraesCS7D01G222500 chr6B 91.111 45 4 0 1793 1837 157910926 157910970 1.480000e-05 62.1
68 TraesCS7D01G222500 chr4A 91.489 47 1 2 4130 4175 74167980 74168024 1.480000e-05 62.1
69 TraesCS7D01G222500 chr4A 92.308 39 3 0 1795 1833 628850646 628850608 6.910000e-04 56.5
70 TraesCS7D01G222500 chr6A 94.872 39 1 1 4129 4166 58306626 58306588 5.340000e-05 60.2
71 TraesCS7D01G222500 chr6A 90.698 43 4 0 1795 1837 603026586 603026544 1.920000e-04 58.4
72 TraesCS7D01G222500 chr3B 87.273 55 2 4 4124 4175 449155957 449155905 1.920000e-04 58.4
73 TraesCS7D01G222500 chrUn 100.000 29 0 0 4128 4156 305217514 305217486 2.000000e-03 54.7
74 TraesCS7D01G222500 chrUn 100.000 29 0 0 4128 4156 425030768 425030796 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G222500 chr7D 183773446 183778383 4937 False 2358.750000 8333 94.472500 1 4938 4 chr7D.!!$F5 4937
1 TraesCS7D01G222500 chr7D 619993586 619994352 766 False 604.000000 604 81.039000 3136 3899 1 chr7D.!!$F4 763
2 TraesCS7D01G222500 chr7A 187429675 187433602 3927 True 1011.714286 2902 90.355143 629 4938 7 chr7A.!!$R3 4309
3 TraesCS7D01G222500 chr7B 152491672 152495056 3384 False 749.333333 2309 88.049556 629 4079 9 chr7B.!!$F1 3450
4 TraesCS7D01G222500 chr7B 716538554 716539313 759 True 562.000000 562 80.208000 3136 3896 1 chr7B.!!$R1 760
5 TraesCS7D01G222500 chr1D 236079025 236080349 1324 False 430.500000 580 93.645500 1 581 2 chr1D.!!$F2 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 1285 0.034616 CTGCCGGCCCAAATGAAAAA 59.965 50.000 26.77 0.0 0.00 1.94 F
541 1287 0.034756 GCCGGCCCAAATGAAAAACT 59.965 50.000 18.11 0.0 0.00 2.66 F
594 1340 0.040425 GACAAATGCGCCGTCTGTTT 60.040 50.000 4.18 0.0 0.00 2.83 F
995 1743 0.178767 CACTCCTCGCCCAATCATGA 59.821 55.000 0.00 0.0 0.00 3.07 F
996 1744 0.467384 ACTCCTCGCCCAATCATGAG 59.533 55.000 0.09 0.0 0.00 2.90 F
997 1745 0.467384 CTCCTCGCCCAATCATGAGT 59.533 55.000 0.09 0.0 0.00 3.41 F
998 1746 0.911769 TCCTCGCCCAATCATGAGTT 59.088 50.000 0.09 0.0 0.00 3.01 F
999 1747 1.134401 TCCTCGCCCAATCATGAGTTC 60.134 52.381 0.09 0.0 0.00 3.01 F
1473 2251 1.155889 CAGCCATGCACGTCAGTTAA 58.844 50.000 0.00 0.0 0.00 2.01 F
1474 2252 1.535028 CAGCCATGCACGTCAGTTAAA 59.465 47.619 0.00 0.0 0.00 1.52 F
3197 4100 1.133025 GAAAGGCGATCCACCATGTTG 59.867 52.381 2.46 0.0 33.74 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1439 2217 0.609957 GGCTGCCATGCTATGCCATA 60.610 55.000 15.17 0.00 38.84 2.74 R
1454 2232 1.155889 TTAACTGACGTGCATGGCTG 58.844 50.000 16.49 16.49 0.00 4.85 R
1968 2799 1.609932 CACGCACTGAATTCACATGC 58.390 50.000 22.10 22.10 0.00 4.06 R
2226 3057 1.974028 TGGCACCTACCCCATAAGAA 58.026 50.000 0.00 0.00 0.00 2.52 R
2955 3852 2.636830 AGGTCATTTTCATGCTCCGAG 58.363 47.619 0.00 0.00 32.68 4.63 R
2961 3858 4.156008 ACGGTCTTTAGGTCATTTTCATGC 59.844 41.667 0.00 0.00 0.00 4.06 R
3075 3972 8.724229 TCTGGATATTTATCATCGCATGAAAAG 58.276 33.333 0.00 0.00 43.50 2.27 R
3084 3982 8.226448 GCTCTGTTTTCTGGATATTTATCATCG 58.774 37.037 0.38 0.00 34.40 3.84 R
3156 4059 0.042880 TGTTACTTGAAACACGCGCG 60.043 50.000 30.96 30.96 34.50 6.86 R
3460 4363 1.177895 TGGCGCATCCTGCTTTTTCA 61.178 50.000 10.83 0.00 42.25 2.69 R
4133 5040 2.172717 ACAAGTAATTCGGGATGGAGGG 59.827 50.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.739929 CACGAAGGCATACACGGCA 60.740 57.895 0.00 0.00 0.00 5.69
110 111 5.491973 CGAGCAAAAACATTCAACCTTTTG 58.508 37.500 0.00 0.00 40.24 2.44
131 132 0.526662 ATTCGTGTCCACCGAGAGTC 59.473 55.000 0.00 0.00 35.49 3.36
167 168 3.492337 AGTTTCCGCCTTACCAATTTGA 58.508 40.909 0.00 0.00 0.00 2.69
214 960 1.421485 GCCGACATGCTCAAGTTCG 59.579 57.895 0.00 0.00 0.00 3.95
220 966 1.269569 ACATGCTCAAGTTCGACGACA 60.270 47.619 0.00 0.00 0.00 4.35
264 1010 1.737838 TCTTTTCTGTATGCCGGCAG 58.262 50.000 35.36 21.14 0.00 4.85
269 1015 0.973496 TCTGTATGCCGGCAGGTGTA 60.973 55.000 35.36 19.45 40.50 2.90
271 1017 1.261938 TGTATGCCGGCAGGTGTACT 61.262 55.000 35.36 18.61 40.50 2.73
318 1064 1.124780 TGGTCGAACTCAAGTCCCAA 58.875 50.000 0.33 0.00 0.00 4.12
325 1071 3.380320 CGAACTCAAGTCCCAACCTTTTT 59.620 43.478 0.00 0.00 0.00 1.94
406 1152 2.192664 TTTCTGAAGCCGGCATTGTA 57.807 45.000 31.54 8.10 0.00 2.41
407 1153 2.418368 TTCTGAAGCCGGCATTGTAT 57.582 45.000 31.54 2.66 0.00 2.29
408 1154 1.667236 TCTGAAGCCGGCATTGTATG 58.333 50.000 31.54 11.61 0.00 2.39
426 1172 3.896133 CCGATGCTGGCATGGTGC 61.896 66.667 13.04 0.00 44.08 5.01
435 1181 3.896133 GCATGGTGCCGGCATGAG 61.896 66.667 35.23 22.88 37.42 2.90
436 1182 2.124612 CATGGTGCCGGCATGAGA 60.125 61.111 35.23 17.09 0.00 3.27
437 1183 2.124570 ATGGTGCCGGCATGAGAC 60.125 61.111 35.23 19.50 0.00 3.36
438 1184 2.970379 ATGGTGCCGGCATGAGACA 61.970 57.895 35.23 24.88 0.00 3.41
439 1185 2.124570 GGTGCCGGCATGAGACAT 60.125 61.111 35.23 0.00 0.00 3.06
440 1186 2.475466 GGTGCCGGCATGAGACATG 61.475 63.158 35.23 7.29 0.00 3.21
441 1187 2.124612 TGCCGGCATGAGACATGG 60.125 61.111 29.03 0.00 0.00 3.66
442 1188 3.589881 GCCGGCATGAGACATGGC 61.590 66.667 24.80 22.27 40.66 4.40
443 1189 2.903855 CCGGCATGAGACATGGCC 60.904 66.667 24.71 17.98 40.95 5.36
445 1191 3.589881 GGCATGAGACATGGCCGC 61.590 66.667 21.83 5.42 38.48 6.53
446 1192 2.515523 GCATGAGACATGGCCGCT 60.516 61.111 12.56 0.00 0.00 5.52
447 1193 2.831366 GCATGAGACATGGCCGCTG 61.831 63.158 12.56 0.00 0.00 5.18
448 1194 2.184830 CATGAGACATGGCCGCTGG 61.185 63.158 9.69 0.00 0.00 4.85
459 1205 2.514592 CCGCTGGCATGATCGGTT 60.515 61.111 0.00 0.00 37.33 4.44
460 1206 2.711311 CGCTGGCATGATCGGTTG 59.289 61.111 0.00 0.00 0.00 3.77
461 1207 2.410469 GCTGGCATGATCGGTTGC 59.590 61.111 0.00 6.56 38.14 4.17
462 1208 2.711311 CTGGCATGATCGGTTGCG 59.289 61.111 0.00 0.00 39.78 4.85
463 1209 2.823593 TGGCATGATCGGTTGCGG 60.824 61.111 0.00 0.00 39.78 5.69
464 1210 2.513666 GGCATGATCGGTTGCGGA 60.514 61.111 0.00 0.00 39.78 5.54
465 1211 2.709475 GCATGATCGGTTGCGGAC 59.291 61.111 0.00 0.00 0.00 4.79
466 1212 2.823829 GCATGATCGGTTGCGGACC 61.824 63.158 0.00 0.00 45.55 4.46
467 1213 1.153369 CATGATCGGTTGCGGACCT 60.153 57.895 7.39 0.00 46.92 3.85
468 1214 0.744414 CATGATCGGTTGCGGACCTT 60.744 55.000 7.39 0.00 46.92 3.50
469 1215 0.035439 ATGATCGGTTGCGGACCTTT 60.035 50.000 7.39 0.00 46.92 3.11
470 1216 0.250553 TGATCGGTTGCGGACCTTTT 60.251 50.000 7.39 0.00 46.92 2.27
471 1217 0.879090 GATCGGTTGCGGACCTTTTT 59.121 50.000 7.39 0.00 46.92 1.94
495 1241 3.354089 AAAAAGTTGAGTGCGGACATG 57.646 42.857 10.52 0.00 0.00 3.21
496 1242 2.254546 AAAGTTGAGTGCGGACATGA 57.745 45.000 10.52 0.00 0.00 3.07
497 1243 2.254546 AAGTTGAGTGCGGACATGAA 57.745 45.000 10.52 0.00 0.00 2.57
498 1244 2.254546 AGTTGAGTGCGGACATGAAA 57.745 45.000 10.52 0.00 0.00 2.69
499 1245 2.783135 AGTTGAGTGCGGACATGAAAT 58.217 42.857 10.52 0.00 0.00 2.17
509 1255 4.929198 CATGAAATGGATCGGCGC 57.071 55.556 0.00 0.00 41.79 6.53
510 1256 1.082561 CATGAAATGGATCGGCGCG 60.083 57.895 0.00 0.00 41.79 6.86
511 1257 1.523711 ATGAAATGGATCGGCGCGT 60.524 52.632 8.43 0.00 0.00 6.01
512 1258 1.095228 ATGAAATGGATCGGCGCGTT 61.095 50.000 8.43 0.00 0.00 4.84
513 1259 1.297598 GAAATGGATCGGCGCGTTG 60.298 57.895 8.43 0.00 0.00 4.10
514 1260 2.646799 GAAATGGATCGGCGCGTTGG 62.647 60.000 8.43 0.00 0.00 3.77
534 1280 4.440127 GCACTGCCGGCCCAAATG 62.440 66.667 26.77 15.53 0.00 2.32
535 1281 2.676121 CACTGCCGGCCCAAATGA 60.676 61.111 26.77 1.11 0.00 2.57
536 1282 2.117206 ACTGCCGGCCCAAATGAA 59.883 55.556 26.77 0.19 0.00 2.57
537 1283 1.532794 ACTGCCGGCCCAAATGAAA 60.533 52.632 26.77 0.00 0.00 2.69
538 1284 1.118356 ACTGCCGGCCCAAATGAAAA 61.118 50.000 26.77 0.00 0.00 2.29
539 1285 0.034616 CTGCCGGCCCAAATGAAAAA 59.965 50.000 26.77 0.00 0.00 1.94
540 1286 0.250081 TGCCGGCCCAAATGAAAAAC 60.250 50.000 26.77 0.00 0.00 2.43
541 1287 0.034756 GCCGGCCCAAATGAAAAACT 59.965 50.000 18.11 0.00 0.00 2.66
542 1288 1.794512 CCGGCCCAAATGAAAAACTG 58.205 50.000 0.00 0.00 0.00 3.16
543 1289 1.342819 CCGGCCCAAATGAAAAACTGA 59.657 47.619 0.00 0.00 0.00 3.41
544 1290 2.610232 CCGGCCCAAATGAAAAACTGAG 60.610 50.000 0.00 0.00 0.00 3.35
545 1291 2.416747 GGCCCAAATGAAAAACTGAGC 58.583 47.619 0.00 0.00 0.00 4.26
546 1292 2.061028 GCCCAAATGAAAAACTGAGCG 58.939 47.619 0.00 0.00 0.00 5.03
547 1293 2.676076 CCCAAATGAAAAACTGAGCGG 58.324 47.619 0.00 0.00 0.00 5.52
548 1294 2.295909 CCCAAATGAAAAACTGAGCGGA 59.704 45.455 0.00 0.00 0.00 5.54
549 1295 3.308530 CCAAATGAAAAACTGAGCGGAC 58.691 45.455 0.00 0.00 0.00 4.79
550 1296 2.969443 AATGAAAAACTGAGCGGACG 57.031 45.000 0.00 0.00 0.00 4.79
551 1297 0.517316 ATGAAAAACTGAGCGGACGC 59.483 50.000 8.91 8.91 42.33 5.19
552 1298 1.206831 GAAAAACTGAGCGGACGCC 59.793 57.895 13.63 5.70 43.17 5.68
582 1328 3.765349 CGACCCAAACGGACAAATG 57.235 52.632 0.00 0.00 34.64 2.32
583 1329 0.386731 CGACCCAAACGGACAAATGC 60.387 55.000 0.00 0.00 34.64 3.56
584 1330 0.386731 GACCCAAACGGACAAATGCG 60.387 55.000 0.00 0.00 46.59 4.73
585 1331 1.732683 CCCAAACGGACAAATGCGC 60.733 57.895 0.00 0.00 44.76 6.09
586 1332 1.732683 CCAAACGGACAAATGCGCC 60.733 57.895 4.18 0.00 44.76 6.53
590 1336 3.118454 CGGACAAATGCGCCGTCT 61.118 61.111 4.18 0.00 40.17 4.18
591 1337 2.480555 GGACAAATGCGCCGTCTG 59.519 61.111 4.18 0.00 0.00 3.51
592 1338 2.325082 GGACAAATGCGCCGTCTGT 61.325 57.895 4.18 2.66 0.00 3.41
593 1339 1.574428 GACAAATGCGCCGTCTGTT 59.426 52.632 4.18 0.00 0.00 3.16
594 1340 0.040425 GACAAATGCGCCGTCTGTTT 60.040 50.000 4.18 0.00 0.00 2.83
595 1341 0.317770 ACAAATGCGCCGTCTGTTTG 60.318 50.000 4.18 9.13 36.23 2.93
596 1342 1.003262 CAAATGCGCCGTCTGTTTGG 61.003 55.000 4.18 0.00 0.00 3.28
597 1343 2.141122 AAATGCGCCGTCTGTTTGGG 62.141 55.000 4.18 0.00 0.00 4.12
598 1344 3.842925 ATGCGCCGTCTGTTTGGGT 62.843 57.895 4.18 0.00 0.00 4.51
599 1345 3.723348 GCGCCGTCTGTTTGGGTC 61.723 66.667 0.00 0.00 0.00 4.46
600 1346 3.411351 CGCCGTCTGTTTGGGTCG 61.411 66.667 0.00 0.00 0.00 4.79
601 1347 3.047877 GCCGTCTGTTTGGGTCGG 61.048 66.667 0.00 0.00 43.37 4.79
602 1348 3.047877 CCGTCTGTTTGGGTCGGC 61.048 66.667 0.00 0.00 35.01 5.54
603 1349 3.047877 CGTCTGTTTGGGTCGGCC 61.048 66.667 0.00 0.00 0.00 6.13
612 1358 4.324991 GGGTCGGCCCGTTGAAGT 62.325 66.667 10.71 0.00 46.51 3.01
613 1359 2.281276 GGTCGGCCCGTTGAAGTT 60.281 61.111 1.63 0.00 0.00 2.66
614 1360 2.613506 GGTCGGCCCGTTGAAGTTG 61.614 63.158 1.63 0.00 0.00 3.16
615 1361 2.975799 TCGGCCCGTTGAAGTTGC 60.976 61.111 1.63 0.00 0.00 4.17
616 1362 2.978010 CGGCCCGTTGAAGTTGCT 60.978 61.111 0.00 0.00 0.00 3.91
617 1363 1.669760 CGGCCCGTTGAAGTTGCTA 60.670 57.895 0.00 0.00 0.00 3.49
618 1364 1.024579 CGGCCCGTTGAAGTTGCTAT 61.025 55.000 0.00 0.00 0.00 2.97
619 1365 0.451783 GGCCCGTTGAAGTTGCTATG 59.548 55.000 0.00 0.00 0.00 2.23
620 1366 1.448985 GCCCGTTGAAGTTGCTATGA 58.551 50.000 0.00 0.00 0.00 2.15
621 1367 1.398390 GCCCGTTGAAGTTGCTATGAG 59.602 52.381 0.00 0.00 0.00 2.90
622 1368 2.009774 CCCGTTGAAGTTGCTATGAGG 58.990 52.381 0.00 0.00 0.00 3.86
623 1369 2.354704 CCCGTTGAAGTTGCTATGAGGA 60.355 50.000 0.00 0.00 0.00 3.71
624 1370 3.334691 CCGTTGAAGTTGCTATGAGGAA 58.665 45.455 0.00 0.00 0.00 3.36
625 1371 3.941483 CCGTTGAAGTTGCTATGAGGAAT 59.059 43.478 0.00 0.00 0.00 3.01
626 1372 5.116180 CCGTTGAAGTTGCTATGAGGAATA 58.884 41.667 0.00 0.00 0.00 1.75
627 1373 5.760253 CCGTTGAAGTTGCTATGAGGAATAT 59.240 40.000 0.00 0.00 0.00 1.28
665 1411 9.734984 ATCATATTCAGCACATATTCAATCTCA 57.265 29.630 0.00 0.00 0.00 3.27
666 1412 9.216117 TCATATTCAGCACATATTCAATCTCAG 57.784 33.333 0.00 0.00 0.00 3.35
667 1413 9.216117 CATATTCAGCACATATTCAATCTCAGA 57.784 33.333 0.00 0.00 0.00 3.27
668 1414 9.961264 ATATTCAGCACATATTCAATCTCAGAT 57.039 29.630 0.00 0.00 0.00 2.90
669 1415 8.693120 ATTCAGCACATATTCAATCTCAGATT 57.307 30.769 0.00 0.00 0.00 2.40
670 1416 9.788889 ATTCAGCACATATTCAATCTCAGATTA 57.211 29.630 0.00 0.00 0.00 1.75
683 1429 6.552445 ATCTCAGATTATATTTCCCCTCCG 57.448 41.667 0.00 0.00 0.00 4.63
687 1433 6.264528 TCAGATTATATTTCCCCTCCGAGAT 58.735 40.000 0.00 0.00 0.00 2.75
688 1434 6.155221 TCAGATTATATTTCCCCTCCGAGATG 59.845 42.308 0.00 0.00 0.00 2.90
693 1439 3.610669 CCCCTCCGAGATGAGCCG 61.611 72.222 0.00 0.00 0.00 5.52
719 1465 2.762535 CCTTTCGGCTAGGACTTTCA 57.237 50.000 0.00 0.00 34.56 2.69
722 1468 4.120589 CCTTTCGGCTAGGACTTTCATAC 58.879 47.826 0.00 0.00 34.56 2.39
753 1499 2.383368 GCACTTTGGCCATATTTGCA 57.617 45.000 19.03 0.00 0.00 4.08
818 1565 1.569479 GGAACTCGCGCTGCTCTTTT 61.569 55.000 5.56 0.00 0.00 2.27
819 1566 0.179238 GAACTCGCGCTGCTCTTTTC 60.179 55.000 5.56 0.00 0.00 2.29
830 1577 4.631813 CGCTGCTCTTTTCTAATAACCACT 59.368 41.667 0.00 0.00 0.00 4.00
884 1632 0.810031 GCGTCCAATGCCGTCATACT 60.810 55.000 0.00 0.00 31.46 2.12
885 1633 1.537348 GCGTCCAATGCCGTCATACTA 60.537 52.381 0.00 0.00 31.46 1.82
886 1634 2.866460 GCGTCCAATGCCGTCATACTAT 60.866 50.000 0.00 0.00 31.46 2.12
887 1635 3.613193 GCGTCCAATGCCGTCATACTATA 60.613 47.826 0.00 0.00 31.46 1.31
888 1636 3.918591 CGTCCAATGCCGTCATACTATAC 59.081 47.826 0.00 0.00 31.46 1.47
922 1670 4.618460 GCATGGCTCATGAATCATGGATTC 60.618 45.833 26.07 11.12 43.81 2.52
933 1681 2.715046 TCATGGATTCAGCAAGACACC 58.285 47.619 0.00 0.00 0.00 4.16
960 1708 9.625747 TGAAAGGCATCTGTATAATTGTTATCA 57.374 29.630 0.00 0.00 0.00 2.15
963 1711 8.103948 AGGCATCTGTATAATTGTTATCAAGC 57.896 34.615 0.00 0.00 36.97 4.01
964 1712 7.720957 AGGCATCTGTATAATTGTTATCAAGCA 59.279 33.333 0.00 0.00 36.97 3.91
993 1741 1.528824 CCACTCCTCGCCCAATCAT 59.471 57.895 0.00 0.00 0.00 2.45
994 1742 0.816825 CCACTCCTCGCCCAATCATG 60.817 60.000 0.00 0.00 0.00 3.07
995 1743 0.178767 CACTCCTCGCCCAATCATGA 59.821 55.000 0.00 0.00 0.00 3.07
996 1744 0.467384 ACTCCTCGCCCAATCATGAG 59.533 55.000 0.09 0.00 0.00 2.90
997 1745 0.467384 CTCCTCGCCCAATCATGAGT 59.533 55.000 0.09 0.00 0.00 3.41
998 1746 0.911769 TCCTCGCCCAATCATGAGTT 59.088 50.000 0.09 0.00 0.00 3.01
999 1747 1.134401 TCCTCGCCCAATCATGAGTTC 60.134 52.381 0.09 0.00 0.00 3.01
1000 1748 1.407299 CCTCGCCCAATCATGAGTTCA 60.407 52.381 0.09 0.00 0.00 3.18
1001 1749 2.569059 CTCGCCCAATCATGAGTTCAT 58.431 47.619 0.09 0.00 36.96 2.57
1360 2118 1.478654 GGTGCTTCCCAGAACTCCAAA 60.479 52.381 0.00 0.00 0.00 3.28
1402 2160 4.202367 CCTGTTAGTCCAACAAGAAGGTCT 60.202 45.833 0.00 0.00 46.37 3.85
1403 2161 4.957296 TGTTAGTCCAACAAGAAGGTCTC 58.043 43.478 0.00 0.00 44.20 3.36
1404 2162 4.654262 TGTTAGTCCAACAAGAAGGTCTCT 59.346 41.667 0.00 0.00 44.20 3.10
1405 2163 5.221461 TGTTAGTCCAACAAGAAGGTCTCTC 60.221 44.000 0.00 0.00 44.20 3.20
1437 2215 5.253330 TCTCTCTCTCTCTCTCTCCAAAAC 58.747 45.833 0.00 0.00 0.00 2.43
1438 2216 4.991776 TCTCTCTCTCTCTCTCCAAAACA 58.008 43.478 0.00 0.00 0.00 2.83
1439 2217 5.579047 TCTCTCTCTCTCTCTCCAAAACAT 58.421 41.667 0.00 0.00 0.00 2.71
1440 2218 6.726379 TCTCTCTCTCTCTCTCCAAAACATA 58.274 40.000 0.00 0.00 0.00 2.29
1441 2219 7.353525 TCTCTCTCTCTCTCTCCAAAACATAT 58.646 38.462 0.00 0.00 0.00 1.78
1442 2220 7.285172 TCTCTCTCTCTCTCTCCAAAACATATG 59.715 40.741 0.00 0.00 0.00 1.78
1443 2221 6.323482 TCTCTCTCTCTCTCCAAAACATATGG 59.677 42.308 7.80 0.00 39.41 2.74
1444 2222 5.028549 TCTCTCTCTCCAAAACATATGGC 57.971 43.478 7.80 0.00 37.88 4.40
1445 2223 4.471025 TCTCTCTCTCCAAAACATATGGCA 59.529 41.667 7.80 0.00 37.88 4.92
1446 2224 5.131642 TCTCTCTCTCCAAAACATATGGCAT 59.868 40.000 4.88 4.88 37.88 4.40
1447 2225 6.327365 TCTCTCTCTCCAAAACATATGGCATA 59.673 38.462 10.07 10.07 37.88 3.14
1448 2226 6.528321 TCTCTCTCCAAAACATATGGCATAG 58.472 40.000 13.39 7.71 37.88 2.23
1449 2227 5.065914 TCTCTCCAAAACATATGGCATAGC 58.934 41.667 13.39 0.00 37.88 2.97
1450 2228 4.790937 TCTCCAAAACATATGGCATAGCA 58.209 39.130 13.39 0.00 37.88 3.49
1451 2229 5.387788 TCTCCAAAACATATGGCATAGCAT 58.612 37.500 13.39 0.00 37.88 3.79
1452 2230 5.242171 TCTCCAAAACATATGGCATAGCATG 59.758 40.000 13.39 9.96 37.88 4.06
1453 2231 4.281435 TCCAAAACATATGGCATAGCATGG 59.719 41.667 13.39 14.82 37.88 3.66
1460 2238 3.773370 GCATAGCATGGCAGCCAT 58.227 55.556 22.36 22.36 46.37 4.40
1471 2249 3.659334 CAGCCATGCACGTCAGTT 58.341 55.556 0.00 0.00 0.00 3.16
1472 2250 2.839629 CAGCCATGCACGTCAGTTA 58.160 52.632 0.00 0.00 0.00 2.24
1473 2251 1.155889 CAGCCATGCACGTCAGTTAA 58.844 50.000 0.00 0.00 0.00 2.01
1474 2252 1.535028 CAGCCATGCACGTCAGTTAAA 59.465 47.619 0.00 0.00 0.00 1.52
1475 2253 2.031245 CAGCCATGCACGTCAGTTAAAA 60.031 45.455 0.00 0.00 0.00 1.52
1476 2254 2.031157 AGCCATGCACGTCAGTTAAAAC 60.031 45.455 0.00 0.00 0.00 2.43
1477 2255 2.287308 GCCATGCACGTCAGTTAAAACA 60.287 45.455 0.00 0.00 0.00 2.83
1478 2256 3.554524 CCATGCACGTCAGTTAAAACAG 58.445 45.455 0.00 0.00 0.00 3.16
1479 2257 3.003275 CCATGCACGTCAGTTAAAACAGT 59.997 43.478 0.00 0.00 0.00 3.55
1480 2258 4.212425 CCATGCACGTCAGTTAAAACAGTA 59.788 41.667 0.00 0.00 0.00 2.74
1481 2259 5.277586 CCATGCACGTCAGTTAAAACAGTAA 60.278 40.000 0.00 0.00 0.00 2.24
1482 2260 5.798015 TGCACGTCAGTTAAAACAGTAAA 57.202 34.783 0.00 0.00 0.00 2.01
1483 2261 6.366315 TGCACGTCAGTTAAAACAGTAAAT 57.634 33.333 0.00 0.00 0.00 1.40
1484 2262 7.479897 TGCACGTCAGTTAAAACAGTAAATA 57.520 32.000 0.00 0.00 0.00 1.40
1485 2263 7.917597 TGCACGTCAGTTAAAACAGTAAATAA 58.082 30.769 0.00 0.00 0.00 1.40
1486 2264 8.396390 TGCACGTCAGTTAAAACAGTAAATAAA 58.604 29.630 0.00 0.00 0.00 1.40
1487 2265 8.675888 GCACGTCAGTTAAAACAGTAAATAAAC 58.324 33.333 0.00 0.00 0.00 2.01
1488 2266 9.925268 CACGTCAGTTAAAACAGTAAATAAACT 57.075 29.630 0.00 0.00 0.00 2.66
1510 2288 6.989659 ACTAAACTCGTAGACCTGATTTCAA 58.010 36.000 0.00 0.00 0.00 2.69
1511 2289 7.612677 ACTAAACTCGTAGACCTGATTTCAAT 58.387 34.615 0.00 0.00 0.00 2.57
1512 2290 6.969828 AAACTCGTAGACCTGATTTCAATC 57.030 37.500 0.00 0.00 35.97 2.67
1513 2291 4.673441 ACTCGTAGACCTGATTTCAATCG 58.327 43.478 0.00 0.00 38.26 3.34
1514 2292 4.158025 ACTCGTAGACCTGATTTCAATCGT 59.842 41.667 0.00 0.00 38.26 3.73
1515 2293 4.421058 TCGTAGACCTGATTTCAATCGTG 58.579 43.478 0.00 0.00 38.26 4.35
1516 2294 3.551890 CGTAGACCTGATTTCAATCGTGG 59.448 47.826 8.85 8.85 38.26 4.94
1517 2295 2.359900 AGACCTGATTTCAATCGTGGC 58.640 47.619 9.85 0.36 38.26 5.01
1518 2296 2.026822 AGACCTGATTTCAATCGTGGCT 60.027 45.455 9.85 2.30 38.26 4.75
1519 2297 2.749621 GACCTGATTTCAATCGTGGCTT 59.250 45.455 9.85 0.00 38.26 4.35
1520 2298 2.489329 ACCTGATTTCAATCGTGGCTTG 59.511 45.455 9.85 0.00 38.26 4.01
1521 2299 2.749076 CCTGATTTCAATCGTGGCTTGA 59.251 45.455 0.00 0.00 38.26 3.02
1539 2317 4.732938 GCTTGATAATTGGTCTGAAGCTGC 60.733 45.833 0.00 0.00 33.22 5.25
1540 2318 3.282021 TGATAATTGGTCTGAAGCTGCC 58.718 45.455 0.00 0.00 0.00 4.85
1562 2390 7.269316 TGCCTGTGTAAATCGAATATAGTTGA 58.731 34.615 0.00 0.00 0.00 3.18
1676 2504 7.859325 TTAGGTTTAAATGTAGCCTGTCATC 57.141 36.000 4.90 0.00 0.00 2.92
1749 2578 5.574082 TGGTTTGTTTCGTTGTTGTGATAG 58.426 37.500 0.00 0.00 0.00 2.08
1759 2588 4.564372 CGTTGTTGTGATAGATGACTCTGG 59.436 45.833 0.00 0.00 32.66 3.86
1830 2659 2.474410 ACATTTTGAGACGGAGGGAC 57.526 50.000 0.00 0.00 0.00 4.46
1910 2741 4.513198 TCACCCCGTTCAATTTGATTTC 57.487 40.909 0.00 0.00 0.00 2.17
1968 2799 2.632377 AGTCTATCAACATGGTTGCCG 58.368 47.619 4.28 0.00 0.00 5.69
2106 2937 6.824553 AGAACATAGTCATACTGCATCACAT 58.175 36.000 0.00 0.00 0.00 3.21
2144 2975 2.376109 GGAGGTCTCCTTGTCGTATGA 58.624 52.381 9.64 0.00 46.16 2.15
2271 3102 4.402056 TGTTCCAAAGAGAGACTTCGTT 57.598 40.909 0.00 0.00 37.93 3.85
2280 3111 3.123804 GAGAGACTTCGTTGCACAAGAA 58.876 45.455 6.30 2.62 0.00 2.52
2281 3112 3.126831 AGAGACTTCGTTGCACAAGAAG 58.873 45.455 18.10 18.10 44.86 2.85
2282 3113 2.213499 AGACTTCGTTGCACAAGAAGG 58.787 47.619 21.56 9.68 43.95 3.46
2312 3146 5.104776 TGAAGGAGGTTTCTCTGTCATATGG 60.105 44.000 2.13 0.00 39.86 2.74
2485 3379 5.543507 AGGTGAAGATGATCCACATAGAC 57.456 43.478 4.62 0.00 39.56 2.59
2544 3438 9.236006 GATCCCAATAAAGCTACAATGACATAT 57.764 33.333 0.00 0.00 0.00 1.78
2546 3440 9.725019 TCCCAATAAAGCTACAATGACATATAG 57.275 33.333 0.00 0.00 0.00 1.31
2548 3442 9.507329 CCAATAAAGCTACAATGACATATAGGT 57.493 33.333 0.00 0.00 0.00 3.08
2561 3455 7.718334 TGACATATAGGTCAGAACAAGAAGA 57.282 36.000 15.89 0.00 42.56 2.87
2562 3456 8.134202 TGACATATAGGTCAGAACAAGAAGAA 57.866 34.615 15.89 0.00 42.56 2.52
2563 3457 8.253810 TGACATATAGGTCAGAACAAGAAGAAG 58.746 37.037 15.89 0.00 42.56 2.85
2564 3458 8.367660 ACATATAGGTCAGAACAAGAAGAAGA 57.632 34.615 0.00 0.00 0.00 2.87
2565 3459 8.986991 ACATATAGGTCAGAACAAGAAGAAGAT 58.013 33.333 0.00 0.00 0.00 2.40
2566 3460 9.474920 CATATAGGTCAGAACAAGAAGAAGATC 57.525 37.037 0.00 0.00 0.00 2.75
2567 3461 5.159273 AGGTCAGAACAAGAAGAAGATCC 57.841 43.478 0.00 0.00 0.00 3.36
2568 3462 4.594920 AGGTCAGAACAAGAAGAAGATCCA 59.405 41.667 0.00 0.00 0.00 3.41
2569 3463 4.693095 GGTCAGAACAAGAAGAAGATCCAC 59.307 45.833 0.00 0.00 0.00 4.02
2570 3464 5.300752 GTCAGAACAAGAAGAAGATCCACA 58.699 41.667 0.00 0.00 0.00 4.17
2571 3465 5.936956 GTCAGAACAAGAAGAAGATCCACAT 59.063 40.000 0.00 0.00 0.00 3.21
2572 3466 7.099764 GTCAGAACAAGAAGAAGATCCACATA 58.900 38.462 0.00 0.00 0.00 2.29
2573 3467 7.604164 GTCAGAACAAGAAGAAGATCCACATAA 59.396 37.037 0.00 0.00 0.00 1.90
2574 3468 8.156820 TCAGAACAAGAAGAAGATCCACATAAA 58.843 33.333 0.00 0.00 0.00 1.40
2575 3469 8.449397 CAGAACAAGAAGAAGATCCACATAAAG 58.551 37.037 0.00 0.00 0.00 1.85
2576 3470 8.160106 AGAACAAGAAGAAGATCCACATAAAGT 58.840 33.333 0.00 0.00 0.00 2.66
2577 3471 7.913674 ACAAGAAGAAGATCCACATAAAGTC 57.086 36.000 0.00 0.00 0.00 3.01
2578 3472 7.453393 ACAAGAAGAAGATCCACATAAAGTCA 58.547 34.615 0.00 0.00 0.00 3.41
2579 3473 7.389053 ACAAGAAGAAGATCCACATAAAGTCAC 59.611 37.037 0.00 0.00 0.00 3.67
2580 3474 7.009179 AGAAGAAGATCCACATAAAGTCACA 57.991 36.000 0.00 0.00 0.00 3.58
2581 3475 7.453393 AGAAGAAGATCCACATAAAGTCACAA 58.547 34.615 0.00 0.00 0.00 3.33
2582 3476 8.105829 AGAAGAAGATCCACATAAAGTCACAAT 58.894 33.333 0.00 0.00 0.00 2.71
2583 3477 7.621428 AGAAGATCCACATAAAGTCACAATG 57.379 36.000 0.00 0.00 0.00 2.82
2584 3478 7.170965 AGAAGATCCACATAAAGTCACAATGT 58.829 34.615 0.00 0.00 34.22 2.71
2585 3479 6.992063 AGATCCACATAAAGTCACAATGTC 57.008 37.500 0.00 0.00 31.60 3.06
2586 3480 6.475504 AGATCCACATAAAGTCACAATGTCA 58.524 36.000 0.00 0.00 31.60 3.58
2587 3481 7.114754 AGATCCACATAAAGTCACAATGTCAT 58.885 34.615 0.00 0.00 31.60 3.06
2588 3482 8.267183 AGATCCACATAAAGTCACAATGTCATA 58.733 33.333 0.00 0.00 31.60 2.15
2589 3483 8.985315 ATCCACATAAAGTCACAATGTCATAT 57.015 30.769 0.00 0.00 31.60 1.78
2591 3485 9.546428 TCCACATAAAGTCACAATGTCATATAG 57.454 33.333 0.00 0.00 31.60 1.31
2592 3486 8.777413 CCACATAAAGTCACAATGTCATATAGG 58.223 37.037 0.00 0.00 31.60 2.57
2593 3487 9.330063 CACATAAAGTCACAATGTCATATAGGT 57.670 33.333 0.00 0.00 31.60 3.08
2750 3647 4.693095 GTCAGAACAAGAAGAAGATCCACC 59.307 45.833 0.00 0.00 0.00 4.61
2776 3673 5.607939 AGTTACAATGTCATATGGGTCGA 57.392 39.130 2.13 0.00 0.00 4.20
2863 3760 8.500753 TCCACATAAAGTTACAATGTCATACC 57.499 34.615 0.00 0.00 31.60 2.73
2932 3829 4.397417 GGTCAAAAGATGAAGTGGATCCAG 59.603 45.833 16.81 0.00 40.50 3.86
2955 3852 7.307632 CCAGACAAAGCTACAATGTCATATAGC 60.308 40.741 18.34 16.27 44.55 2.97
2961 3858 5.098893 GCTACAATGTCATATAGCTCGGAG 58.901 45.833 16.56 0.00 37.62 4.63
3084 3982 9.638239 TTCCATGTTAATTTACTCTTTTCATGC 57.362 29.630 0.00 0.00 31.92 4.06
3186 4089 3.695830 TCAAGTAACAGGAAAGGCGAT 57.304 42.857 0.00 0.00 0.00 4.58
3197 4100 1.133025 GAAAGGCGATCCACCATGTTG 59.867 52.381 2.46 0.00 33.74 3.33
3218 4121 3.182967 GACTCTCATAGCCACAAGAACG 58.817 50.000 0.00 0.00 0.00 3.95
3349 4252 1.490574 CCGACTCCCTTCCATTCTCT 58.509 55.000 0.00 0.00 0.00 3.10
3350 4253 1.137872 CCGACTCCCTTCCATTCTCTG 59.862 57.143 0.00 0.00 0.00 3.35
3363 4266 2.793160 TTCTCTGCCAAGCGCCTCTG 62.793 60.000 2.29 0.00 36.24 3.35
3385 4288 3.089784 ATCGTCGCGATGTTTGCC 58.910 55.556 26.40 4.34 45.24 4.52
3390 4293 2.179018 CGCGATGTTTGCCCCAAG 59.821 61.111 0.00 0.00 0.00 3.61
3663 4569 0.531974 GTGACCTGCCACGACTTGAA 60.532 55.000 0.00 0.00 0.00 2.69
4012 4918 1.210155 GACGGTTCCAAGTGCATGC 59.790 57.895 11.82 11.82 0.00 4.06
4047 4953 6.331369 ACTAAATAAATGTGTGCTTGCTGT 57.669 33.333 0.00 0.00 0.00 4.40
4050 4956 0.460722 AAATGTGTGCTTGCTGTGCA 59.539 45.000 0.00 0.00 38.19 4.57
4055 4961 1.314534 TGTGCTTGCTGTGCAGTGTT 61.315 50.000 0.00 0.00 40.61 3.32
4064 4970 1.745087 CTGTGCAGTGTTTTGGTGACT 59.255 47.619 0.00 0.00 0.00 3.41
4087 4993 6.326323 ACTTTGATGTTAATTTTGGGGTCACT 59.674 34.615 0.00 0.00 0.00 3.41
4098 5004 5.799827 TTTGGGGTCACTTTCCATTTAAG 57.200 39.130 0.00 0.00 0.00 1.85
4101 5007 4.045334 TGGGGTCACTTTCCATTTAAGGAT 59.955 41.667 0.00 0.00 37.56 3.24
4144 5051 2.890814 AGTTATACTCCCTCCATCCCG 58.109 52.381 0.00 0.00 0.00 5.14
4155 5062 3.467803 CCTCCATCCCGAATTACTTGTC 58.532 50.000 0.00 0.00 0.00 3.18
4163 5070 3.242413 CCCGAATTACTTGTCGCAGAATG 60.242 47.826 0.00 0.00 39.69 2.67
4174 5081 7.665690 ACTTGTCGCAGAATGAAGATATATCT 58.334 34.615 9.57 9.57 39.69 1.98
4175 5082 7.812191 ACTTGTCGCAGAATGAAGATATATCTC 59.188 37.037 15.62 9.78 39.69 2.75
4180 5087 9.201127 TCGCAGAATGAAGATATATCTCTTTTG 57.799 33.333 15.62 14.20 39.69 2.44
4181 5088 8.441608 CGCAGAATGAAGATATATCTCTTTTGG 58.558 37.037 15.62 5.08 39.69 3.28
4182 5089 8.235905 GCAGAATGAAGATATATCTCTTTTGGC 58.764 37.037 15.62 10.51 39.69 4.52
4208 5127 7.357859 CGACAAATAATTCCGAACGGACTATAC 60.358 40.741 15.63 7.64 45.11 1.47
4209 5128 7.495055 ACAAATAATTCCGAACGGACTATACT 58.505 34.615 15.63 4.90 45.11 2.12
4282 5201 9.102757 CCTCCAATGGATTATATCTTATTGTCG 57.897 37.037 0.87 0.00 34.79 4.35
4298 5217 7.652105 TCTTATTGTCGTATCTAAATGTGCTCC 59.348 37.037 0.00 0.00 0.00 4.70
4321 5240 4.631377 CCATTTAATGTGCTTCGTGAGAGA 59.369 41.667 4.15 0.00 43.69 3.10
4375 5294 7.541783 GCTAAGAGCTATGATATGACAACTCTG 59.458 40.741 0.00 0.00 38.45 3.35
4379 5298 8.739039 AGAGCTATGATATGACAACTCTGTATC 58.261 37.037 0.00 0.00 35.30 2.24
4430 5349 8.892723 CAGATTTTTGTATAGGTGTCATGCTTA 58.107 33.333 0.00 0.00 0.00 3.09
4446 5365 7.447545 TGTCATGCTTAAGATATAGTCCTACGT 59.552 37.037 6.67 0.00 0.00 3.57
4464 5383 1.004610 CGTGAAGCATTGATACTGCCG 60.005 52.381 0.00 0.00 40.56 5.69
4467 5386 3.001330 GTGAAGCATTGATACTGCCGTAC 59.999 47.826 0.00 0.00 40.56 3.67
4485 5404 5.798434 GCCGTACGCTCATTTTAAAATTTCT 59.202 36.000 10.49 0.00 0.00 2.52
4511 5430 8.465273 AAATTAATGGTTATCTTCCTAGTGGC 57.535 34.615 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.740296 GCCGTGTATGCCTTCGTGT 60.740 57.895 0.00 0.00 0.00 4.49
24 25 0.765510 AAAGAAGGTTGTCCTCGGCT 59.234 50.000 0.00 0.00 44.35 5.52
36 37 0.040067 GCCAACACTCGCAAAGAAGG 60.040 55.000 0.00 0.00 0.00 3.46
85 86 2.693074 AGGTTGAATGTTTTTGCTCGGT 59.307 40.909 0.00 0.00 0.00 4.69
87 88 5.491973 CAAAAGGTTGAATGTTTTTGCTCG 58.508 37.500 0.00 0.00 36.83 5.03
96 97 4.340950 ACACGAATCCAAAAGGTTGAATGT 59.659 37.500 0.00 0.00 36.83 2.71
110 111 0.179134 CTCTCGGTGGACACGAATCC 60.179 60.000 0.00 0.00 40.16 3.01
131 132 2.159599 GGAAACTTCTTGCGCTCATGAG 60.160 50.000 18.84 18.84 0.00 2.90
214 960 2.120232 CGCCATAGATCACTTGTCGTC 58.880 52.381 0.00 0.00 0.00 4.20
220 966 0.032678 CTCGCCGCCATAGATCACTT 59.967 55.000 0.00 0.00 0.00 3.16
251 997 0.810031 GTACACCTGCCGGCATACAG 60.810 60.000 32.87 21.78 0.00 2.74
264 1010 1.671850 CCGTGGTCATGACAGTACACC 60.672 57.143 26.47 9.25 0.00 4.16
269 1015 1.975327 CTCCCGTGGTCATGACAGT 59.025 57.895 26.47 0.00 0.00 3.55
271 1017 2.662596 GCTCCCGTGGTCATGACA 59.337 61.111 26.47 10.65 0.00 3.58
273 1019 3.770040 CGGCTCCCGTGGTCATGA 61.770 66.667 0.00 0.00 42.73 3.07
297 1043 0.666577 GGGACTTGAGTTCGACCACG 60.667 60.000 0.00 0.00 41.26 4.94
325 1071 0.102663 CACACATGCCAGCACACAAA 59.897 50.000 0.00 0.00 0.00 2.83
366 1112 7.066163 CAGAAAATATCACCACAGTTCATGCTA 59.934 37.037 0.00 0.00 0.00 3.49
409 1155 3.896133 GCACCATGCCAGCATCGG 61.896 66.667 15.26 15.26 37.42 4.18
418 1164 3.896133 CTCATGCCGGCACCATGC 61.896 66.667 35.50 0.00 44.08 4.06
419 1165 2.124612 TCTCATGCCGGCACCATG 60.125 61.111 35.50 26.75 41.03 3.66
420 1166 2.124570 GTCTCATGCCGGCACCAT 60.125 61.111 35.50 14.65 0.00 3.55
421 1167 2.970379 ATGTCTCATGCCGGCACCA 61.970 57.895 35.50 22.60 0.00 4.17
422 1168 2.124570 ATGTCTCATGCCGGCACC 60.125 61.111 35.50 17.52 0.00 5.01
423 1169 2.475466 CCATGTCTCATGCCGGCAC 61.475 63.158 35.50 19.90 0.00 5.01
424 1170 2.124612 CCATGTCTCATGCCGGCA 60.125 61.111 34.80 34.80 0.00 5.69
425 1171 3.589881 GCCATGTCTCATGCCGGC 61.590 66.667 22.73 22.73 0.00 6.13
426 1172 2.903855 GGCCATGTCTCATGCCGG 60.904 66.667 0.00 0.00 33.59 6.13
428 1174 3.589881 GCGGCCATGTCTCATGCC 61.590 66.667 2.24 8.14 40.54 4.40
429 1175 2.515523 AGCGGCCATGTCTCATGC 60.516 61.111 2.24 0.00 0.00 4.06
430 1176 2.184830 CCAGCGGCCATGTCTCATG 61.185 63.158 2.24 3.11 0.00 3.07
431 1177 2.191375 CCAGCGGCCATGTCTCAT 59.809 61.111 2.24 0.00 0.00 2.90
432 1178 4.783621 GCCAGCGGCCATGTCTCA 62.784 66.667 2.24 0.00 44.06 3.27
443 1189 2.711311 CAACCGATCATGCCAGCG 59.289 61.111 0.00 0.00 0.00 5.18
444 1190 2.410469 GCAACCGATCATGCCAGC 59.590 61.111 4.26 0.00 36.56 4.85
445 1191 2.711311 CGCAACCGATCATGCCAG 59.289 61.111 8.92 0.00 39.39 4.85
446 1192 2.823593 CCGCAACCGATCATGCCA 60.824 61.111 8.92 0.00 39.39 4.92
447 1193 2.513666 TCCGCAACCGATCATGCC 60.514 61.111 8.92 0.00 39.39 4.40
448 1194 2.709475 GTCCGCAACCGATCATGC 59.291 61.111 5.33 5.33 39.17 4.06
449 1195 3.409856 GGTCCGCAACCGATCATG 58.590 61.111 0.00 0.00 38.58 3.07
475 1221 2.948979 TCATGTCCGCACTCAACTTTTT 59.051 40.909 0.00 0.00 0.00 1.94
476 1222 2.571212 TCATGTCCGCACTCAACTTTT 58.429 42.857 0.00 0.00 0.00 2.27
477 1223 2.254546 TCATGTCCGCACTCAACTTT 57.745 45.000 0.00 0.00 0.00 2.66
478 1224 2.254546 TTCATGTCCGCACTCAACTT 57.745 45.000 0.00 0.00 0.00 2.66
479 1225 2.254546 TTTCATGTCCGCACTCAACT 57.745 45.000 0.00 0.00 0.00 3.16
480 1226 2.414559 CCATTTCATGTCCGCACTCAAC 60.415 50.000 0.00 0.00 0.00 3.18
481 1227 1.811965 CCATTTCATGTCCGCACTCAA 59.188 47.619 0.00 0.00 0.00 3.02
482 1228 1.003003 TCCATTTCATGTCCGCACTCA 59.997 47.619 0.00 0.00 0.00 3.41
483 1229 1.737838 TCCATTTCATGTCCGCACTC 58.262 50.000 0.00 0.00 0.00 3.51
484 1230 2.292267 GATCCATTTCATGTCCGCACT 58.708 47.619 0.00 0.00 0.00 4.40
485 1231 1.003545 CGATCCATTTCATGTCCGCAC 60.004 52.381 0.00 0.00 0.00 5.34
486 1232 1.298602 CGATCCATTTCATGTCCGCA 58.701 50.000 0.00 0.00 0.00 5.69
487 1233 0.588252 CCGATCCATTTCATGTCCGC 59.412 55.000 0.00 0.00 0.00 5.54
488 1234 0.588252 GCCGATCCATTTCATGTCCG 59.412 55.000 0.00 0.00 0.00 4.79
489 1235 0.588252 CGCCGATCCATTTCATGTCC 59.412 55.000 0.00 0.00 0.00 4.02
490 1236 0.040958 GCGCCGATCCATTTCATGTC 60.041 55.000 0.00 0.00 0.00 3.06
491 1237 1.775039 CGCGCCGATCCATTTCATGT 61.775 55.000 0.00 0.00 0.00 3.21
492 1238 1.082561 CGCGCCGATCCATTTCATG 60.083 57.895 0.00 0.00 0.00 3.07
493 1239 1.095228 AACGCGCCGATCCATTTCAT 61.095 50.000 5.73 0.00 0.00 2.57
494 1240 1.743623 AACGCGCCGATCCATTTCA 60.744 52.632 5.73 0.00 0.00 2.69
495 1241 1.297598 CAACGCGCCGATCCATTTC 60.298 57.895 5.73 0.00 0.00 2.17
496 1242 2.760159 CCAACGCGCCGATCCATTT 61.760 57.895 5.73 0.00 0.00 2.32
497 1243 3.202001 CCAACGCGCCGATCCATT 61.202 61.111 5.73 0.00 0.00 3.16
517 1263 4.440127 CATTTGGGCCGGCAGTGC 62.440 66.667 30.85 10.78 0.00 4.40
518 1264 1.814772 TTTCATTTGGGCCGGCAGTG 61.815 55.000 30.85 15.15 0.00 3.66
519 1265 1.118356 TTTTCATTTGGGCCGGCAGT 61.118 50.000 30.85 0.50 0.00 4.40
520 1266 0.034616 TTTTTCATTTGGGCCGGCAG 59.965 50.000 30.85 10.27 0.00 4.85
521 1267 0.250081 GTTTTTCATTTGGGCCGGCA 60.250 50.000 30.85 7.96 0.00 5.69
522 1268 0.034756 AGTTTTTCATTTGGGCCGGC 59.965 50.000 21.18 21.18 0.00 6.13
523 1269 1.342819 TCAGTTTTTCATTTGGGCCGG 59.657 47.619 0.00 0.00 0.00 6.13
524 1270 2.676076 CTCAGTTTTTCATTTGGGCCG 58.324 47.619 0.00 0.00 0.00 6.13
525 1271 2.416747 GCTCAGTTTTTCATTTGGGCC 58.583 47.619 0.00 0.00 30.87 5.80
526 1272 2.061028 CGCTCAGTTTTTCATTTGGGC 58.939 47.619 0.00 0.00 33.74 5.36
527 1273 2.295909 TCCGCTCAGTTTTTCATTTGGG 59.704 45.455 0.00 0.00 0.00 4.12
528 1274 3.308530 GTCCGCTCAGTTTTTCATTTGG 58.691 45.455 0.00 0.00 0.00 3.28
529 1275 2.973224 CGTCCGCTCAGTTTTTCATTTG 59.027 45.455 0.00 0.00 0.00 2.32
530 1276 2.604614 GCGTCCGCTCAGTTTTTCATTT 60.605 45.455 4.10 0.00 38.26 2.32
531 1277 1.069227 GCGTCCGCTCAGTTTTTCATT 60.069 47.619 4.10 0.00 38.26 2.57
532 1278 0.517316 GCGTCCGCTCAGTTTTTCAT 59.483 50.000 4.10 0.00 38.26 2.57
533 1279 1.503818 GGCGTCCGCTCAGTTTTTCA 61.504 55.000 11.82 0.00 41.60 2.69
534 1280 1.206831 GGCGTCCGCTCAGTTTTTC 59.793 57.895 11.82 0.00 41.60 2.29
535 1281 2.604174 CGGCGTCCGCTCAGTTTTT 61.604 57.895 11.82 0.00 41.17 1.94
536 1282 3.041940 CGGCGTCCGCTCAGTTTT 61.042 61.111 11.82 0.00 41.17 2.43
561 1307 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
562 1308 1.520600 ATTTGTCCGTTTGGGTCGGC 61.521 55.000 0.00 0.00 46.49 5.54
564 1310 0.386731 GCATTTGTCCGTTTGGGTCG 60.387 55.000 0.00 0.00 37.00 4.79
565 1311 0.386731 CGCATTTGTCCGTTTGGGTC 60.387 55.000 0.00 0.00 37.00 4.46
566 1312 1.657556 CGCATTTGTCCGTTTGGGT 59.342 52.632 0.00 0.00 37.00 4.51
567 1313 1.732683 GCGCATTTGTCCGTTTGGG 60.733 57.895 0.30 0.00 35.24 4.12
568 1314 1.732683 GGCGCATTTGTCCGTTTGG 60.733 57.895 10.83 0.00 0.00 3.28
569 1315 2.080062 CGGCGCATTTGTCCGTTTG 61.080 57.895 10.83 0.00 38.47 2.93
570 1316 2.254051 CGGCGCATTTGTCCGTTT 59.746 55.556 10.83 0.00 38.47 3.60
574 1320 1.852067 AACAGACGGCGCATTTGTCC 61.852 55.000 10.83 0.00 33.09 4.02
575 1321 0.040425 AAACAGACGGCGCATTTGTC 60.040 50.000 10.83 11.43 0.00 3.18
576 1322 0.317770 CAAACAGACGGCGCATTTGT 60.318 50.000 10.83 5.40 0.00 2.83
577 1323 1.003262 CCAAACAGACGGCGCATTTG 61.003 55.000 10.83 12.30 0.00 2.32
578 1324 1.285641 CCAAACAGACGGCGCATTT 59.714 52.632 10.83 0.00 0.00 2.32
579 1325 2.625823 CCCAAACAGACGGCGCATT 61.626 57.895 10.83 0.00 0.00 3.56
580 1326 3.055719 CCCAAACAGACGGCGCAT 61.056 61.111 10.83 0.00 0.00 4.73
581 1327 4.555709 ACCCAAACAGACGGCGCA 62.556 61.111 10.83 0.00 0.00 6.09
582 1328 3.723348 GACCCAAACAGACGGCGC 61.723 66.667 6.90 0.00 0.00 6.53
583 1329 3.411351 CGACCCAAACAGACGGCG 61.411 66.667 4.80 4.80 0.00 6.46
584 1330 3.047877 CCGACCCAAACAGACGGC 61.048 66.667 0.00 0.00 37.32 5.68
585 1331 3.047877 GCCGACCCAAACAGACGG 61.048 66.667 0.00 0.00 45.26 4.79
586 1332 3.047877 GGCCGACCCAAACAGACG 61.048 66.667 0.00 0.00 0.00 4.18
596 1342 2.281276 AACTTCAACGGGCCGACC 60.281 61.111 35.78 0.00 0.00 4.79
597 1343 2.943653 CAACTTCAACGGGCCGAC 59.056 61.111 35.78 0.00 0.00 4.79
598 1344 2.102109 TAGCAACTTCAACGGGCCGA 62.102 55.000 35.78 7.50 0.00 5.54
599 1345 1.024579 ATAGCAACTTCAACGGGCCG 61.025 55.000 27.06 27.06 0.00 6.13
600 1346 0.451783 CATAGCAACTTCAACGGGCC 59.548 55.000 0.00 0.00 0.00 5.80
601 1347 1.398390 CTCATAGCAACTTCAACGGGC 59.602 52.381 0.00 0.00 0.00 6.13
602 1348 2.009774 CCTCATAGCAACTTCAACGGG 58.990 52.381 0.00 0.00 0.00 5.28
603 1349 2.972625 TCCTCATAGCAACTTCAACGG 58.027 47.619 0.00 0.00 0.00 4.44
604 1350 6.851222 ATATTCCTCATAGCAACTTCAACG 57.149 37.500 0.00 0.00 0.00 4.10
655 1401 9.972106 GAGGGGAAATATAATCTGAGATTGAAT 57.028 33.333 17.50 6.80 0.00 2.57
657 1403 7.310671 CGGAGGGGAAATATAATCTGAGATTGA 60.311 40.741 17.50 6.06 0.00 2.57
658 1404 6.820656 CGGAGGGGAAATATAATCTGAGATTG 59.179 42.308 17.50 0.00 0.00 2.67
661 1407 5.651303 TCGGAGGGGAAATATAATCTGAGA 58.349 41.667 0.00 0.00 0.00 3.27
662 1408 5.717178 TCTCGGAGGGGAAATATAATCTGAG 59.283 44.000 4.96 0.00 40.14 3.35
663 1409 5.651303 TCTCGGAGGGGAAATATAATCTGA 58.349 41.667 4.96 0.00 0.00 3.27
664 1410 6.155221 TCATCTCGGAGGGGAAATATAATCTG 59.845 42.308 4.96 0.00 0.00 2.90
665 1411 6.264528 TCATCTCGGAGGGGAAATATAATCT 58.735 40.000 4.96 0.00 0.00 2.40
666 1412 6.546428 TCATCTCGGAGGGGAAATATAATC 57.454 41.667 4.96 0.00 0.00 1.75
667 1413 5.104735 GCTCATCTCGGAGGGGAAATATAAT 60.105 44.000 4.96 0.00 35.41 1.28
668 1414 4.223032 GCTCATCTCGGAGGGGAAATATAA 59.777 45.833 4.96 0.00 35.41 0.98
669 1415 3.769844 GCTCATCTCGGAGGGGAAATATA 59.230 47.826 4.96 0.00 35.41 0.86
670 1416 2.569404 GCTCATCTCGGAGGGGAAATAT 59.431 50.000 4.96 0.00 35.41 1.28
678 1424 1.667154 TTGTCGGCTCATCTCGGAGG 61.667 60.000 4.96 0.00 35.41 4.30
710 1456 6.518537 GCCATATTACGGAGTATGAAAGTCCT 60.519 42.308 11.53 0.00 45.21 3.85
718 1464 5.179368 CCAAAGTGCCATATTACGGAGTATG 59.821 44.000 3.20 3.20 45.21 2.39
719 1465 5.305585 CCAAAGTGCCATATTACGGAGTAT 58.694 41.667 0.00 0.00 45.21 2.12
722 1468 2.290641 GCCAAAGTGCCATATTACGGAG 59.709 50.000 0.00 0.00 0.00 4.63
753 1499 3.900601 GGAGTATGTCAGATCTGGTGGAT 59.099 47.826 22.42 11.32 37.37 3.41
806 1553 3.374058 TGGTTATTAGAAAAGAGCAGCGC 59.626 43.478 0.00 0.00 0.00 5.92
830 1577 5.186409 ACCGTTGCTCTCCTATTTGTAGTAA 59.814 40.000 0.00 0.00 0.00 2.24
839 1586 2.166664 GACTCAACCGTTGCTCTCCTAT 59.833 50.000 6.37 0.00 0.00 2.57
884 1632 1.674359 CATGCAAGGGCCAACGTATA 58.326 50.000 6.18 0.00 40.13 1.47
885 1633 1.037030 CCATGCAAGGGCCAACGTAT 61.037 55.000 6.18 0.00 40.13 3.06
886 1634 1.677300 CCATGCAAGGGCCAACGTA 60.677 57.895 6.18 0.00 40.13 3.57
887 1635 2.990967 CCATGCAAGGGCCAACGT 60.991 61.111 6.18 0.00 40.13 3.99
922 1670 0.595095 GCCTTTCAGGTGTCTTGCTG 59.405 55.000 0.00 0.00 37.80 4.41
930 1678 6.319658 ACAATTATACAGATGCCTTTCAGGTG 59.680 38.462 0.00 0.00 37.80 4.00
939 1687 7.874940 TGCTTGATAACAATTATACAGATGCC 58.125 34.615 0.00 0.00 35.37 4.40
963 1711 4.320494 GGCGAGGAGTGGCATAAATTTATG 60.320 45.833 26.99 26.99 42.61 1.90
964 1712 3.821033 GGCGAGGAGTGGCATAAATTTAT 59.179 43.478 4.81 4.81 0.00 1.40
993 1741 7.567250 TGGGTCCTATTTATAGTCATGAACTCA 59.433 37.037 0.00 0.00 39.55 3.41
994 1742 7.963532 TGGGTCCTATTTATAGTCATGAACTC 58.036 38.462 0.00 0.00 39.55 3.01
995 1743 7.931015 TGGGTCCTATTTATAGTCATGAACT 57.069 36.000 0.00 0.00 42.33 3.01
996 1744 8.157476 ACATGGGTCCTATTTATAGTCATGAAC 58.843 37.037 0.00 0.00 32.93 3.18
997 1745 8.275187 ACATGGGTCCTATTTATAGTCATGAA 57.725 34.615 0.00 0.00 32.93 2.57
998 1746 7.872061 ACATGGGTCCTATTTATAGTCATGA 57.128 36.000 16.90 0.00 32.93 3.07
1350 2108 1.770324 CTGGGGGCTTTGGAGTTCT 59.230 57.895 0.00 0.00 0.00 3.01
1402 2160 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1403 2161 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1404 2162 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1405 2163 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1437 2215 1.134367 GCTGCCATGCTATGCCATATG 59.866 52.381 0.00 0.00 0.00 1.78
1438 2216 1.471119 GCTGCCATGCTATGCCATAT 58.529 50.000 0.00 0.00 0.00 1.78
1439 2217 0.609957 GGCTGCCATGCTATGCCATA 60.610 55.000 15.17 0.00 38.84 2.74
1440 2218 1.906824 GGCTGCCATGCTATGCCAT 60.907 57.895 15.17 0.00 38.84 4.40
1441 2219 2.520020 GGCTGCCATGCTATGCCA 60.520 61.111 15.17 0.00 38.84 4.92
1442 2220 1.906824 ATGGCTGCCATGCTATGCC 60.907 57.895 32.12 9.36 43.39 4.40
1443 2221 3.773370 ATGGCTGCCATGCTATGC 58.227 55.556 32.12 0.00 43.39 3.14
1454 2232 1.155889 TTAACTGACGTGCATGGCTG 58.844 50.000 16.49 16.49 0.00 4.85
1455 2233 1.890876 TTTAACTGACGTGCATGGCT 58.109 45.000 14.17 0.00 0.00 4.75
1456 2234 2.287308 TGTTTTAACTGACGTGCATGGC 60.287 45.455 11.36 8.10 0.00 4.40
1457 2235 3.003275 ACTGTTTTAACTGACGTGCATGG 59.997 43.478 11.36 0.00 0.00 3.66
1458 2236 4.209452 ACTGTTTTAACTGACGTGCATG 57.791 40.909 3.82 3.82 0.00 4.06
1459 2237 5.994887 TTACTGTTTTAACTGACGTGCAT 57.005 34.783 0.00 0.00 0.00 3.96
1460 2238 5.798015 TTTACTGTTTTAACTGACGTGCA 57.202 34.783 0.00 0.00 0.00 4.57
1461 2239 8.675888 GTTTATTTACTGTTTTAACTGACGTGC 58.324 33.333 0.00 0.00 0.00 5.34
1462 2240 9.925268 AGTTTATTTACTGTTTTAACTGACGTG 57.075 29.630 0.00 0.00 0.00 4.49
1475 2253 9.631452 GGTCTACGAGTTTAGTTTATTTACTGT 57.369 33.333 0.00 0.00 0.00 3.55
1476 2254 9.852091 AGGTCTACGAGTTTAGTTTATTTACTG 57.148 33.333 0.00 0.00 0.00 2.74
1477 2255 9.852091 CAGGTCTACGAGTTTAGTTTATTTACT 57.148 33.333 0.00 0.00 0.00 2.24
1478 2256 9.846248 TCAGGTCTACGAGTTTAGTTTATTTAC 57.154 33.333 0.00 0.00 0.00 2.01
1480 2258 9.939802 AATCAGGTCTACGAGTTTAGTTTATTT 57.060 29.630 0.00 0.00 0.00 1.40
1481 2259 9.939802 AAATCAGGTCTACGAGTTTAGTTTATT 57.060 29.630 0.00 0.00 0.00 1.40
1482 2260 9.583765 GAAATCAGGTCTACGAGTTTAGTTTAT 57.416 33.333 0.00 0.00 0.00 1.40
1483 2261 8.579006 TGAAATCAGGTCTACGAGTTTAGTTTA 58.421 33.333 0.00 0.00 0.00 2.01
1484 2262 7.439381 TGAAATCAGGTCTACGAGTTTAGTTT 58.561 34.615 0.00 0.00 0.00 2.66
1485 2263 6.989659 TGAAATCAGGTCTACGAGTTTAGTT 58.010 36.000 0.00 0.00 0.00 2.24
1486 2264 6.585695 TGAAATCAGGTCTACGAGTTTAGT 57.414 37.500 0.00 0.00 0.00 2.24
1487 2265 7.043986 CGATTGAAATCAGGTCTACGAGTTTAG 60.044 40.741 4.06 0.00 35.11 1.85
1488 2266 6.750501 CGATTGAAATCAGGTCTACGAGTTTA 59.249 38.462 4.06 0.00 35.11 2.01
1489 2267 5.577164 CGATTGAAATCAGGTCTACGAGTTT 59.423 40.000 4.06 0.00 35.11 2.66
1490 2268 5.103000 CGATTGAAATCAGGTCTACGAGTT 58.897 41.667 4.06 0.00 35.11 3.01
1491 2269 4.158025 ACGATTGAAATCAGGTCTACGAGT 59.842 41.667 4.06 0.00 35.11 4.18
1492 2270 4.500837 CACGATTGAAATCAGGTCTACGAG 59.499 45.833 4.06 0.00 35.11 4.18
1510 2288 3.879295 CAGACCAATTATCAAGCCACGAT 59.121 43.478 0.00 0.00 0.00 3.73
1511 2289 3.055458 TCAGACCAATTATCAAGCCACGA 60.055 43.478 0.00 0.00 0.00 4.35
1512 2290 3.270027 TCAGACCAATTATCAAGCCACG 58.730 45.455 0.00 0.00 0.00 4.94
1513 2291 4.439289 GCTTCAGACCAATTATCAAGCCAC 60.439 45.833 0.00 0.00 30.66 5.01
1514 2292 3.696051 GCTTCAGACCAATTATCAAGCCA 59.304 43.478 0.00 0.00 30.66 4.75
1515 2293 3.950395 AGCTTCAGACCAATTATCAAGCC 59.050 43.478 8.93 0.00 36.28 4.35
1516 2294 4.732938 GCAGCTTCAGACCAATTATCAAGC 60.733 45.833 0.00 0.00 35.95 4.01
1517 2295 4.201990 GGCAGCTTCAGACCAATTATCAAG 60.202 45.833 0.00 0.00 0.00 3.02
1518 2296 3.696051 GGCAGCTTCAGACCAATTATCAA 59.304 43.478 0.00 0.00 0.00 2.57
1519 2297 3.054139 AGGCAGCTTCAGACCAATTATCA 60.054 43.478 0.00 0.00 0.00 2.15
1520 2298 3.314635 CAGGCAGCTTCAGACCAATTATC 59.685 47.826 0.00 0.00 0.00 1.75
1521 2299 3.285484 CAGGCAGCTTCAGACCAATTAT 58.715 45.455 0.00 0.00 0.00 1.28
1676 2504 4.981674 ACAAACAAATCGTTTATGCTGTGG 59.018 37.500 0.00 0.00 46.27 4.17
1732 2561 6.366332 AGAGTCATCTATCACAACAACGAAAC 59.634 38.462 0.00 0.00 32.54 2.78
1759 2588 7.206687 CCTCTGAATATTAGACCTCTGAACAC 58.793 42.308 0.00 0.00 0.00 3.32
1819 2648 4.143543 GCTAAATACTAGTCCCTCCGTCT 58.856 47.826 0.00 0.00 0.00 4.18
1910 2741 5.239306 ACTGTGATAAACCACAAGTCACATG 59.761 40.000 6.92 0.00 45.47 3.21
1968 2799 1.609932 CACGCACTGAATTCACATGC 58.390 50.000 22.10 22.10 0.00 4.06
2069 2900 5.250543 TGACTATGTTCTTCCCCTTGATCAA 59.749 40.000 8.12 8.12 0.00 2.57
2106 2937 7.175104 AGACCTCCTTTAAATTATGTTCAGCA 58.825 34.615 0.00 0.00 0.00 4.41
2133 2964 7.278646 TCTCCATCTTTTGATTCATACGACAAG 59.721 37.037 0.00 0.00 36.97 3.16
2144 2975 9.933723 CCTTTAAATTGTCTCCATCTTTTGATT 57.066 29.630 0.00 0.00 36.97 2.57
2178 3009 2.091541 ACTTTTGCCCCATATGACACG 58.908 47.619 3.65 0.00 0.00 4.49
2226 3057 1.974028 TGGCACCTACCCCATAAGAA 58.026 50.000 0.00 0.00 0.00 2.52
2271 3102 3.405831 CTTCACATCTCCTTCTTGTGCA 58.594 45.455 0.00 0.00 40.38 4.57
2280 3111 3.517500 GAGAAACCTCCTTCACATCTCCT 59.482 47.826 0.00 0.00 0.00 3.69
2281 3112 3.517500 AGAGAAACCTCCTTCACATCTCC 59.482 47.826 0.00 0.00 33.92 3.71
2282 3113 4.020662 ACAGAGAAACCTCCTTCACATCTC 60.021 45.833 0.00 0.00 33.69 2.75
2485 3379 8.437360 TGTTCTGGCTTATATGACATTGTAAG 57.563 34.615 12.51 12.51 0.00 2.34
2501 3395 3.371380 GGGATCATCTTCTTGTTCTGGCT 60.371 47.826 0.00 0.00 0.00 4.75
2544 3438 5.780282 TGGATCTTCTTCTTGTTCTGACCTA 59.220 40.000 0.00 0.00 0.00 3.08
2546 3440 4.693095 GTGGATCTTCTTCTTGTTCTGACC 59.307 45.833 0.00 0.00 0.00 4.02
2548 3442 5.551305 TGTGGATCTTCTTCTTGTTCTGA 57.449 39.130 0.00 0.00 0.00 3.27
2549 3443 7.912056 TTATGTGGATCTTCTTCTTGTTCTG 57.088 36.000 0.00 0.00 0.00 3.02
2550 3444 8.160106 ACTTTATGTGGATCTTCTTCTTGTTCT 58.840 33.333 0.00 0.00 0.00 3.01
2551 3445 8.329203 ACTTTATGTGGATCTTCTTCTTGTTC 57.671 34.615 0.00 0.00 0.00 3.18
2552 3446 7.939039 TGACTTTATGTGGATCTTCTTCTTGTT 59.061 33.333 0.00 0.00 0.00 2.83
2553 3447 7.389053 GTGACTTTATGTGGATCTTCTTCTTGT 59.611 37.037 0.00 0.00 0.00 3.16
2554 3448 7.388776 TGTGACTTTATGTGGATCTTCTTCTTG 59.611 37.037 0.00 0.00 0.00 3.02
2555 3449 7.453393 TGTGACTTTATGTGGATCTTCTTCTT 58.547 34.615 0.00 0.00 0.00 2.52
2556 3450 7.009179 TGTGACTTTATGTGGATCTTCTTCT 57.991 36.000 0.00 0.00 0.00 2.85
2557 3451 7.672983 TTGTGACTTTATGTGGATCTTCTTC 57.327 36.000 0.00 0.00 0.00 2.87
2558 3452 7.667219 ACATTGTGACTTTATGTGGATCTTCTT 59.333 33.333 0.00 0.00 31.66 2.52
2559 3453 7.170965 ACATTGTGACTTTATGTGGATCTTCT 58.829 34.615 0.00 0.00 31.66 2.85
2560 3454 7.119699 TGACATTGTGACTTTATGTGGATCTTC 59.880 37.037 0.00 0.00 32.94 2.87
2561 3455 6.942005 TGACATTGTGACTTTATGTGGATCTT 59.058 34.615 0.00 0.00 32.94 2.40
2562 3456 6.475504 TGACATTGTGACTTTATGTGGATCT 58.524 36.000 0.00 0.00 32.94 2.75
2563 3457 6.741992 TGACATTGTGACTTTATGTGGATC 57.258 37.500 0.00 0.00 32.94 3.36
2564 3458 8.985315 ATATGACATTGTGACTTTATGTGGAT 57.015 30.769 0.00 0.00 32.94 3.41
2565 3459 9.546428 CTATATGACATTGTGACTTTATGTGGA 57.454 33.333 0.00 0.00 32.94 4.02
2566 3460 8.777413 CCTATATGACATTGTGACTTTATGTGG 58.223 37.037 0.00 0.00 32.94 4.17
2567 3461 9.330063 ACCTATATGACATTGTGACTTTATGTG 57.670 33.333 0.00 0.00 32.94 3.21
2568 3462 9.547753 GACCTATATGACATTGTGACTTTATGT 57.452 33.333 0.00 0.00 35.33 2.29
2569 3463 9.546428 TGACCTATATGACATTGTGACTTTATG 57.454 33.333 0.00 0.00 0.00 1.90
2570 3464 9.770097 CTGACCTATATGACATTGTGACTTTAT 57.230 33.333 0.00 0.00 0.00 1.40
2571 3465 8.977412 TCTGACCTATATGACATTGTGACTTTA 58.023 33.333 0.00 0.00 0.00 1.85
2572 3466 7.851228 TCTGACCTATATGACATTGTGACTTT 58.149 34.615 0.00 0.00 0.00 2.66
2573 3467 7.423844 TCTGACCTATATGACATTGTGACTT 57.576 36.000 0.00 0.00 0.00 3.01
2574 3468 7.093333 TGTTCTGACCTATATGACATTGTGACT 60.093 37.037 0.00 0.00 0.00 3.41
2575 3469 7.041721 TGTTCTGACCTATATGACATTGTGAC 58.958 38.462 0.00 0.00 0.00 3.67
2576 3470 7.181569 TGTTCTGACCTATATGACATTGTGA 57.818 36.000 0.00 0.00 0.00 3.58
2577 3471 7.765819 TCTTGTTCTGACCTATATGACATTGTG 59.234 37.037 0.00 0.00 0.00 3.33
2578 3472 7.851228 TCTTGTTCTGACCTATATGACATTGT 58.149 34.615 0.00 0.00 0.00 2.71
2579 3473 8.722480 TTCTTGTTCTGACCTATATGACATTG 57.278 34.615 0.00 0.00 0.00 2.82
2580 3474 8.762645 TCTTCTTGTTCTGACCTATATGACATT 58.237 33.333 0.00 0.00 0.00 2.71
2581 3475 8.311395 TCTTCTTGTTCTGACCTATATGACAT 57.689 34.615 0.00 0.00 0.00 3.06
2582 3476 7.718334 TCTTCTTGTTCTGACCTATATGACA 57.282 36.000 0.00 0.00 0.00 3.58
2583 3477 8.417106 TCATCTTCTTGTTCTGACCTATATGAC 58.583 37.037 0.00 0.00 0.00 3.06
2584 3478 8.539117 TCATCTTCTTGTTCTGACCTATATGA 57.461 34.615 0.00 0.00 0.00 2.15
2585 3479 9.421806 GATCATCTTCTTGTTCTGACCTATATG 57.578 37.037 0.00 0.00 0.00 1.78
2586 3480 8.592809 GGATCATCTTCTTGTTCTGACCTATAT 58.407 37.037 0.00 0.00 0.00 0.86
2587 3481 7.015682 GGGATCATCTTCTTGTTCTGACCTATA 59.984 40.741 0.00 0.00 0.00 1.31
2588 3482 6.183361 GGGATCATCTTCTTGTTCTGACCTAT 60.183 42.308 0.00 0.00 0.00 2.57
2589 3483 5.129485 GGGATCATCTTCTTGTTCTGACCTA 59.871 44.000 0.00 0.00 0.00 3.08
2590 3484 4.080638 GGGATCATCTTCTTGTTCTGACCT 60.081 45.833 0.00 0.00 0.00 3.85
2591 3485 4.195416 GGGATCATCTTCTTGTTCTGACC 58.805 47.826 0.00 0.00 0.00 4.02
2592 3486 4.836825 TGGGATCATCTTCTTGTTCTGAC 58.163 43.478 0.00 0.00 0.00 3.51
2593 3487 5.503634 TTGGGATCATCTTCTTGTTCTGA 57.496 39.130 0.00 0.00 0.00 3.27
2750 3647 7.709182 TCGACCCATATGACATTGTAACTTTAG 59.291 37.037 3.65 0.00 0.00 1.85
2776 3673 7.398332 AGCTTTATTGGGATCATCTTCTTGTTT 59.602 33.333 0.00 0.00 0.00 2.83
2827 3724 9.436957 TGTAACTTTATGTGGATCTTCTTCTTC 57.563 33.333 0.00 0.00 0.00 2.87
2863 3760 5.416083 TGTATACTCTTCATGGTTTGACCG 58.584 41.667 4.17 0.00 42.58 4.79
2932 3829 7.721286 AGCTATATGACATTGTAGCTTTGTC 57.279 36.000 20.72 1.52 45.48 3.18
2955 3852 2.636830 AGGTCATTTTCATGCTCCGAG 58.363 47.619 0.00 0.00 32.68 4.63
2961 3858 4.156008 ACGGTCTTTAGGTCATTTTCATGC 59.844 41.667 0.00 0.00 0.00 4.06
3075 3972 8.724229 TCTGGATATTTATCATCGCATGAAAAG 58.276 33.333 0.00 0.00 43.50 2.27
3084 3982 8.226448 GCTCTGTTTTCTGGATATTTATCATCG 58.774 37.037 0.38 0.00 34.40 3.84
3156 4059 0.042880 TGTTACTTGAAACACGCGCG 60.043 50.000 30.96 30.96 34.50 6.86
3159 4062 3.955771 TTCCTGTTACTTGAAACACGC 57.044 42.857 0.00 0.00 35.56 5.34
3186 4089 3.118629 GCTATGAGAGTCAACATGGTGGA 60.119 47.826 11.68 0.00 0.00 4.02
3197 4100 3.119459 TCGTTCTTGTGGCTATGAGAGTC 60.119 47.826 0.00 0.00 0.00 3.36
3218 4121 4.474226 AGAAAACATCTGCGTGTCTTTC 57.526 40.909 11.62 11.62 36.88 2.62
3460 4363 1.177895 TGGCGCATCCTGCTTTTTCA 61.178 50.000 10.83 0.00 42.25 2.69
3725 4631 0.554792 CCCCTTTCCATGCTCTCCAT 59.445 55.000 0.00 0.00 33.39 3.41
3958 4864 2.182842 GCATCTCACACATCCCGGC 61.183 63.158 0.00 0.00 0.00 6.13
3959 4865 1.884464 CGCATCTCACACATCCCGG 60.884 63.158 0.00 0.00 0.00 5.73
4012 4918 8.879759 ACACATTTATTTAGTACAACCTCGATG 58.120 33.333 0.00 0.00 0.00 3.84
4047 4953 2.822561 TCAAAGTCACCAAAACACTGCA 59.177 40.909 0.00 0.00 0.00 4.41
4050 4956 5.659440 AACATCAAAGTCACCAAAACACT 57.341 34.783 0.00 0.00 0.00 3.55
4055 4961 7.497249 CCCAAAATTAACATCAAAGTCACCAAA 59.503 33.333 0.00 0.00 0.00 3.28
4064 4970 6.739331 AGTGACCCCAAAATTAACATCAAA 57.261 33.333 0.00 0.00 0.00 2.69
4087 4993 7.833682 TGCATTGAGAGTATCCTTAAATGGAAA 59.166 33.333 0.00 0.00 39.85 3.13
4133 5040 2.172717 ACAAGTAATTCGGGATGGAGGG 59.827 50.000 0.00 0.00 0.00 4.30
4144 5051 6.408858 TCTTCATTCTGCGACAAGTAATTC 57.591 37.500 0.00 0.00 0.00 2.17
4155 5062 8.441608 CCAAAAGAGATATATCTTCATTCTGCG 58.558 37.037 16.37 2.38 38.59 5.18
4163 5070 7.715265 TTGTCGCCAAAAGAGATATATCTTC 57.285 36.000 16.37 9.72 38.59 2.87
4174 5081 4.456222 TCGGAATTATTTGTCGCCAAAAGA 59.544 37.500 0.00 0.00 43.43 2.52
4175 5082 4.728534 TCGGAATTATTTGTCGCCAAAAG 58.271 39.130 0.00 0.00 43.43 2.27
4180 5087 2.538132 CCGTTCGGAATTATTTGTCGCC 60.538 50.000 5.19 0.00 0.00 5.54
4181 5088 2.349275 TCCGTTCGGAATTATTTGTCGC 59.651 45.455 11.66 0.00 0.00 5.19
4182 5089 3.615496 AGTCCGTTCGGAATTATTTGTCG 59.385 43.478 15.59 0.00 35.89 4.35
4245 5164 5.815233 ATCCATTGGAGGTACATCTAGTG 57.185 43.478 11.78 8.37 34.05 2.74
4280 5199 4.955811 ATGGGAGCACATTTAGATACGA 57.044 40.909 0.00 0.00 0.00 3.43
4298 5217 4.631377 TCTCTCACGAAGCACATTAAATGG 59.369 41.667 0.00 0.00 33.60 3.16
4393 5312 9.396022 CCTATACAAAAATCTGGTATGACACTT 57.604 33.333 0.00 0.00 0.00 3.16
4404 5323 7.325660 AGCATGACACCTATACAAAAATCTG 57.674 36.000 0.00 0.00 0.00 2.90
4430 5349 6.902771 ATGCTTCACGTAGGACTATATCTT 57.097 37.500 0.00 0.00 0.00 2.40
4446 5365 2.401583 ACGGCAGTATCAATGCTTCA 57.598 45.000 0.00 0.00 43.35 3.02
4485 5404 9.569122 GCCACTAGGAAGATAACCATTAATTTA 57.431 33.333 0.00 0.00 36.89 1.40
4914 5833 5.262009 GCAAATTAGTAGGAAAGAAGGGGT 58.738 41.667 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.