Multiple sequence alignment - TraesCS7D01G222100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G222100 chr7D 100.000 6153 0 0 1001 7153 183323177 183317025 0.000000e+00 11363.0
1 TraesCS7D01G222100 chr7D 100.000 613 0 0 1 613 183324177 183323565 0.000000e+00 1133.0
2 TraesCS7D01G222100 chr7D 89.443 341 26 6 64 394 8991691 8991351 8.580000e-114 422.0
3 TraesCS7D01G222100 chr7A 96.374 3447 91 21 2124 5554 188026804 188030232 0.000000e+00 5642.0
4 TraesCS7D01G222100 chr7A 97.970 1133 22 1 1001 2132 188025487 188026619 0.000000e+00 1964.0
5 TraesCS7D01G222100 chr7A 88.437 787 50 15 5550 6316 188030334 188031099 0.000000e+00 911.0
6 TraesCS7D01G222100 chr7A 89.560 364 12 4 6812 7153 188031291 188031650 8.520000e-119 438.0
7 TraesCS7D01G222100 chr7A 97.183 213 5 1 401 612 188025201 188025413 6.820000e-95 359.0
8 TraesCS7D01G222100 chr7A 90.840 131 9 3 6599 6726 188031116 188031246 9.540000e-39 172.0
9 TraesCS7D01G222100 chr7A 87.050 139 16 1 2823 2961 287638863 287638727 9.610000e-34 156.0
10 TraesCS7D01G222100 chr7A 87.640 89 11 0 5214 5302 192669495 192669407 3.530000e-18 104.0
11 TraesCS7D01G222100 chr7B 95.943 1824 61 5 2381 4194 152053029 152051209 0.000000e+00 2946.0
12 TraesCS7D01G222100 chr7B 96.328 1389 29 9 1001 2386 152054430 152053061 0.000000e+00 2263.0
13 TraesCS7D01G222100 chr7B 92.747 1034 57 10 4196 5216 152050541 152049513 0.000000e+00 1478.0
14 TraesCS7D01G222100 chr7B 89.200 1037 59 22 5297 6315 152049515 152048514 0.000000e+00 1245.0
15 TraesCS7D01G222100 chr7B 90.746 335 26 4 63 394 383873179 383873511 6.590000e-120 442.0
16 TraesCS7D01G222100 chr7B 91.633 251 19 2 6879 7129 152048304 152048056 5.310000e-91 346.0
17 TraesCS7D01G222100 chr7B 97.838 185 4 0 428 612 152054683 152054499 3.220000e-83 320.0
18 TraesCS7D01G222100 chr5D 85.856 1209 134 16 3113 4300 472808650 472807458 0.000000e+00 1251.0
19 TraesCS7D01G222100 chr5D 89.474 57 4 1 4308 4362 472807423 472807367 3.580000e-08 71.3
20 TraesCS7D01G222100 chr5B 84.336 1213 147 20 3113 4300 580170772 580169578 0.000000e+00 1147.0
21 TraesCS7D01G222100 chr5B 87.140 591 72 4 3113 3701 580196270 580195682 0.000000e+00 667.0
22 TraesCS7D01G222100 chr5B 88.235 340 38 2 3279 3617 580171876 580171538 8.640000e-109 405.0
23 TraesCS7D01G222100 chr5B 78.899 654 86 30 2829 3475 360596091 360596699 5.200000e-106 396.0
24 TraesCS7D01G222100 chr5B 84.173 417 48 12 3664 4075 216615509 216615106 8.700000e-104 388.0
25 TraesCS7D01G222100 chr5B 86.592 358 40 6 43 394 544809920 544809565 8.700000e-104 388.0
26 TraesCS7D01G222100 chr5B 86.429 280 33 4 6326 6603 320410910 320411186 1.170000e-77 302.0
27 TraesCS7D01G222100 chr5B 91.765 85 7 0 5215 5299 43551674 43551758 1.260000e-22 119.0
28 TraesCS7D01G222100 chr5B 90.000 80 4 3 4194 4270 580193538 580193460 4.570000e-17 100.0
29 TraesCS7D01G222100 chr5B 83.529 85 13 1 5215 5299 334665173 334665256 2.140000e-10 78.7
30 TraesCS7D01G222100 chr5B 91.228 57 3 1 4308 4362 580169543 580169487 7.690000e-10 76.8
31 TraesCS7D01G222100 chr5B 89.796 49 2 2 4427 4472 591529248 591529296 7.750000e-05 60.2
32 TraesCS7D01G222100 chr3D 84.846 1069 135 19 2677 3739 169887311 169886264 0.000000e+00 1051.0
33 TraesCS7D01G222100 chr3D 88.027 593 65 5 1341 1929 169889127 169888537 0.000000e+00 697.0
34 TraesCS7D01G222100 chr3D 87.324 284 31 4 6324 6604 145199361 145199642 3.220000e-83 320.0
35 TraesCS7D01G222100 chr3A 83.633 1112 142 27 2641 3739 207242914 207241830 0.000000e+00 1009.0
36 TraesCS7D01G222100 chr3A 88.618 369 42 0 1541 1909 207244473 207244105 3.940000e-122 449.0
37 TraesCS7D01G222100 chr3A 87.952 332 29 5 2980 3310 12610962 12610641 1.460000e-101 381.0
38 TraesCS7D01G222100 chr3A 90.000 200 14 5 1341 1536 207246069 207245872 3.310000e-63 254.0
39 TraesCS7D01G222100 chr3A 92.105 114 9 0 2980 3093 728871286 728871173 2.070000e-35 161.0
40 TraesCS7D01G222100 chr3A 93.182 44 3 0 5257 5300 59810437 59810394 1.670000e-06 65.8
41 TraesCS7D01G222100 chr6A 78.349 836 136 21 2823 3655 338193386 338192593 3.850000e-137 499.0
42 TraesCS7D01G222100 chr6A 83.529 85 14 0 5215 5299 563706056 563706140 5.950000e-11 80.5
43 TraesCS7D01G222100 chr6A 89.583 48 2 3 4418 4465 524716347 524716303 2.790000e-04 58.4
44 TraesCS7D01G222100 chr4A 89.356 357 29 7 45 394 668444238 668444592 2.370000e-119 440.0
45 TraesCS7D01G222100 chr4A 86.014 286 35 4 6322 6604 713987507 713987224 1.170000e-77 302.0
46 TraesCS7D01G222100 chr4A 89.535 86 9 0 5215 5300 586426850 586426935 7.590000e-20 110.0
47 TraesCS7D01G222100 chr4A 85.455 55 5 3 4418 4470 582527464 582527517 4.000000e-03 54.7
48 TraesCS7D01G222100 chr2B 79.877 651 84 25 2823 3470 491567761 491567155 3.960000e-117 433.0
49 TraesCS7D01G222100 chr2B 89.412 340 27 5 63 394 73993859 73994197 3.090000e-113 420.0
50 TraesCS7D01G222100 chr2B 87.812 361 30 10 45 392 66552617 66552976 1.860000e-110 411.0
51 TraesCS7D01G222100 chr2B 87.636 275 31 2 3175 3447 170834395 170834668 4.160000e-82 316.0
52 TraesCS7D01G222100 chr2B 87.189 281 30 5 6327 6604 714072751 714072474 1.500000e-81 315.0
53 TraesCS7D01G222100 chr2B 86.572 283 33 4 6325 6604 582801529 582801809 2.510000e-79 307.0
54 TraesCS7D01G222100 chr2B 87.179 273 30 4 6332 6601 160951866 160951596 9.010000e-79 305.0
55 TraesCS7D01G222100 chr2B 81.139 281 22 12 4106 4357 170834781 170835059 5.660000e-46 196.0
56 TraesCS7D01G222100 chr2A 89.676 339 25 8 63 394 204626152 204626487 2.390000e-114 424.0
57 TraesCS7D01G222100 chr2A 87.755 49 5 1 4439 4486 750586527 750586575 1.000000e-03 56.5
58 TraesCS7D01G222100 chr4B 87.466 367 28 6 43 394 429341150 429340787 2.400000e-109 407.0
59 TraesCS7D01G222100 chr4B 91.304 46 1 2 4427 4470 30731029 30730985 7.750000e-05 60.2
60 TraesCS7D01G222100 chr1D 88.623 334 33 4 64 394 21844931 21845262 1.120000e-107 401.0
61 TraesCS7D01G222100 chr4D 87.273 275 30 4 6332 6603 437030443 437030171 6.970000e-80 309.0
62 TraesCS7D01G222100 chr4D 96.970 33 0 1 4438 4470 18695265 18695234 4.000000e-03 54.7
63 TraesCS7D01G222100 chrUn 86.738 279 32 4 6328 6603 34630845 34631121 9.010000e-79 305.0
64 TraesCS7D01G222100 chr1B 86.477 281 32 5 6327 6604 354583008 354582731 3.240000e-78 303.0
65 TraesCS7D01G222100 chr1B 91.111 45 2 1 4427 4469 577828339 577828383 7.750000e-05 60.2
66 TraesCS7D01G222100 chr6B 88.372 86 10 0 5214 5299 48938450 48938365 3.530000e-18 104.0
67 TraesCS7D01G222100 chr5A 89.041 73 8 0 5227 5299 675487203 675487275 2.750000e-14 91.6
68 TraesCS7D01G222100 chr5A 97.222 36 1 0 5204 5239 535220015 535219980 2.150000e-05 62.1
69 TraesCS7D01G222100 chr5A 88.000 50 4 2 4427 4474 3119598 3119549 2.790000e-04 58.4
70 TraesCS7D01G222100 chr2D 89.362 47 3 2 4427 4471 416856676 416856722 2.790000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G222100 chr7D 183317025 183324177 7152 True 6248.000000 11363 100.000000 1 7153 2 chr7D.!!$R2 7152
1 TraesCS7D01G222100 chr7A 188025201 188031650 6449 False 1581.000000 5642 93.394000 401 7153 6 chr7A.!!$F1 6752
2 TraesCS7D01G222100 chr7B 152048056 152054683 6627 True 1433.000000 2946 93.948167 428 7129 6 chr7B.!!$R1 6701
3 TraesCS7D01G222100 chr5D 472807367 472808650 1283 True 661.150000 1251 87.665000 3113 4362 2 chr5D.!!$R1 1249
4 TraesCS7D01G222100 chr5B 580169487 580171876 2389 True 542.933333 1147 87.933000 3113 4362 3 chr5B.!!$R3 1249
5 TraesCS7D01G222100 chr5B 360596091 360596699 608 False 396.000000 396 78.899000 2829 3475 1 chr5B.!!$F4 646
6 TraesCS7D01G222100 chr5B 580193460 580196270 2810 True 383.500000 667 88.570000 3113 4270 2 chr5B.!!$R4 1157
7 TraesCS7D01G222100 chr3D 169886264 169889127 2863 True 874.000000 1051 86.436500 1341 3739 2 chr3D.!!$R1 2398
8 TraesCS7D01G222100 chr3A 207241830 207246069 4239 True 570.666667 1009 87.417000 1341 3739 3 chr3A.!!$R4 2398
9 TraesCS7D01G222100 chr6A 338192593 338193386 793 True 499.000000 499 78.349000 2823 3655 1 chr6A.!!$R1 832
10 TraesCS7D01G222100 chr2B 491567155 491567761 606 True 433.000000 433 79.877000 2823 3470 1 chr2B.!!$R2 647
11 TraesCS7D01G222100 chr2B 170834395 170835059 664 False 256.000000 316 84.387500 3175 4357 2 chr2B.!!$F4 1182

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.036388 GGAATGAGCTCGGGTGAACA 60.036 55.000 9.64 0.0 0.00 3.18 F
385 386 0.322456 TGAGCCCGGGAACAGAAATG 60.322 55.000 29.31 0.0 0.00 2.32 F
389 390 0.609131 CCCGGGAACAGAAATGCACT 60.609 55.000 18.48 0.0 0.00 4.40 F
390 391 1.247567 CCGGGAACAGAAATGCACTT 58.752 50.000 0.00 0.0 0.00 3.16 F
1306 1308 1.280133 CTTTCTGCTCCAGGTGATCCA 59.720 52.381 0.00 0.0 35.89 3.41 F
3035 5224 1.289160 ACTATGGTGTCCCACTGCAT 58.711 50.000 0.00 0.0 45.65 3.96 F
4176 8092 0.903942 AATGCATGGCGTGGGAAAAT 59.096 45.000 9.08 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1319 1321 0.107361 AATTCCGCCGGAAACCCTAG 60.107 55.000 24.10 0.00 45.41 3.02 R
1341 1346 3.154473 CCTCGGCGAATCCCCTCA 61.154 66.667 12.13 0.00 0.00 3.86 R
2316 4198 6.594788 AATGATTAACTGTTGAGTGCCATT 57.405 33.333 2.69 2.20 30.61 3.16 R
3035 5224 4.864806 GTCTCATACAGCTCACGAATCAAA 59.135 41.667 0.00 0.00 0.00 2.69 R
3865 7773 3.616379 GTCATAGCTTGCAACTGAGAGAC 59.384 47.826 0.00 0.00 0.00 3.36 R
4335 8948 1.343465 ACAGTGACTAACCCAACCTCG 59.657 52.381 0.00 0.00 0.00 4.63 R
6763 11539 0.040603 CCTACGCGTCCGGACTATTC 60.041 60.000 30.92 16.13 39.22 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.621953 AGAGTTTCTGCACCTGAGC 57.378 52.632 0.00 0.00 0.00 4.26
19 20 1.055040 AGAGTTTCTGCACCTGAGCT 58.945 50.000 0.00 0.00 34.99 4.09
20 21 1.155042 GAGTTTCTGCACCTGAGCTG 58.845 55.000 0.00 0.00 34.99 4.24
21 22 0.471617 AGTTTCTGCACCTGAGCTGT 59.528 50.000 0.00 0.00 35.31 4.40
22 23 1.133976 AGTTTCTGCACCTGAGCTGTT 60.134 47.619 0.00 0.00 35.31 3.16
23 24 1.265365 GTTTCTGCACCTGAGCTGTTC 59.735 52.381 0.00 0.00 35.31 3.18
25 26 0.250038 TCTGCACCTGAGCTGTTCAC 60.250 55.000 0.00 0.00 35.31 3.18
26 27 1.227943 TGCACCTGAGCTGTTCACC 60.228 57.895 0.00 0.00 34.99 4.02
27 28 2.320587 GCACCTGAGCTGTTCACCG 61.321 63.158 0.00 0.00 0.00 4.94
30 31 1.739562 CCTGAGCTGTTCACCGAGC 60.740 63.158 0.00 0.00 35.28 5.03
33 34 3.459823 AGCTGTTCACCGAGCTCA 58.540 55.556 15.40 0.00 41.94 4.26
34 35 1.291588 AGCTGTTCACCGAGCTCAG 59.708 57.895 15.40 4.66 41.94 3.35
35 36 1.739562 GCTGTTCACCGAGCTCAGG 60.740 63.158 15.40 17.55 32.12 3.86
36 37 1.967535 CTGTTCACCGAGCTCAGGA 59.032 57.895 25.01 12.11 0.00 3.86
48 49 3.383092 CTCAGGAGCAGGAATGAGC 57.617 57.895 0.00 0.00 33.41 4.26
52 53 4.434685 GAGCAGGAATGAGCTCGG 57.565 61.111 9.64 0.00 46.53 4.63
53 54 1.227497 GAGCAGGAATGAGCTCGGG 60.227 63.158 9.64 0.00 46.53 5.14
54 55 1.965754 GAGCAGGAATGAGCTCGGGT 61.966 60.000 9.64 0.00 46.53 5.28
55 56 1.817099 GCAGGAATGAGCTCGGGTG 60.817 63.158 9.64 3.27 0.00 4.61
57 58 0.250234 CAGGAATGAGCTCGGGTGAA 59.750 55.000 9.64 0.00 0.00 3.18
58 59 0.250513 AGGAATGAGCTCGGGTGAAC 59.749 55.000 9.64 0.00 0.00 3.18
59 60 0.036388 GGAATGAGCTCGGGTGAACA 60.036 55.000 9.64 0.00 0.00 3.18
60 61 1.363744 GAATGAGCTCGGGTGAACAG 58.636 55.000 9.64 0.00 0.00 3.16
61 62 0.687354 AATGAGCTCGGGTGAACAGT 59.313 50.000 9.64 0.00 0.00 3.55
62 63 1.557099 ATGAGCTCGGGTGAACAGTA 58.443 50.000 9.64 0.00 0.00 2.74
63 64 1.334160 TGAGCTCGGGTGAACAGTAA 58.666 50.000 9.64 0.00 0.00 2.24
64 65 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
65 66 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
66 67 3.244422 TGAGCTCGGGTGAACAGTAAAAT 60.244 43.478 9.64 0.00 0.00 1.82
67 68 3.335579 AGCTCGGGTGAACAGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
68 69 3.071479 GCTCGGGTGAACAGTAAAATCA 58.929 45.455 0.00 0.00 0.00 2.57
69 70 3.500680 GCTCGGGTGAACAGTAAAATCAA 59.499 43.478 0.00 0.00 0.00 2.57
70 71 4.023536 GCTCGGGTGAACAGTAAAATCAAA 60.024 41.667 0.00 0.00 0.00 2.69
72 73 6.452494 TCGGGTGAACAGTAAAATCAAAAA 57.548 33.333 0.00 0.00 0.00 1.94
125 126 8.655970 AGAAACATTGACAAAAGTTTTAAGTGC 58.344 29.630 17.76 8.51 37.33 4.40
126 127 8.546597 AAACATTGACAAAAGTTTTAAGTGCT 57.453 26.923 13.35 0.00 34.43 4.40
128 129 7.962917 ACATTGACAAAAGTTTTAAGTGCTTG 58.037 30.769 0.00 0.00 0.00 4.01
129 130 6.401955 TTGACAAAAGTTTTAAGTGCTTGC 57.598 33.333 0.00 0.00 0.00 4.01
130 131 5.473931 TGACAAAAGTTTTAAGTGCTTGCA 58.526 33.333 0.00 0.00 0.00 4.08
131 132 5.928839 TGACAAAAGTTTTAAGTGCTTGCAA 59.071 32.000 0.00 0.00 0.00 4.08
132 133 6.425114 TGACAAAAGTTTTAAGTGCTTGCAAA 59.575 30.769 0.00 0.00 0.00 3.68
134 135 7.643579 ACAAAAGTTTTAAGTGCTTGCAAAAA 58.356 26.923 0.00 0.00 0.00 1.94
135 136 8.296000 ACAAAAGTTTTAAGTGCTTGCAAAAAT 58.704 25.926 0.00 0.00 0.00 1.82
137 138 8.894409 AAAGTTTTAAGTGCTTGCAAAAATTC 57.106 26.923 0.00 0.00 29.83 2.17
138 139 6.704819 AGTTTTAAGTGCTTGCAAAAATTCG 58.295 32.000 0.00 0.00 0.00 3.34
139 140 6.312672 AGTTTTAAGTGCTTGCAAAAATTCGT 59.687 30.769 0.00 0.00 0.00 3.85
140 141 6.654793 TTTAAGTGCTTGCAAAAATTCGTT 57.345 29.167 0.00 0.00 0.00 3.85
141 142 6.654793 TTAAGTGCTTGCAAAAATTCGTTT 57.345 29.167 0.00 0.00 0.00 3.60
142 143 5.544136 AAGTGCTTGCAAAAATTCGTTTT 57.456 30.435 0.00 0.00 40.16 2.43
162 163 8.289618 TCGTTTTGAAATCACATTTCTAGAAGG 58.710 33.333 5.12 5.08 46.71 3.46
163 164 7.061094 CGTTTTGAAATCACATTTCTAGAAGGC 59.939 37.037 5.12 0.00 46.71 4.35
164 165 5.801350 TGAAATCACATTTCTAGAAGGCG 57.199 39.130 5.12 1.16 46.71 5.52
165 166 5.245531 TGAAATCACATTTCTAGAAGGCGT 58.754 37.500 5.12 1.78 46.71 5.68
166 167 5.122239 TGAAATCACATTTCTAGAAGGCGTG 59.878 40.000 18.08 18.08 46.71 5.34
167 168 3.953712 TCACATTTCTAGAAGGCGTGA 57.046 42.857 20.83 20.83 0.00 4.35
168 169 4.265904 TCACATTTCTAGAAGGCGTGAA 57.734 40.909 21.75 11.70 0.00 3.18
169 170 4.637276 TCACATTTCTAGAAGGCGTGAAA 58.363 39.130 21.75 8.66 33.74 2.69
170 171 5.060506 TCACATTTCTAGAAGGCGTGAAAA 58.939 37.500 21.75 8.16 33.09 2.29
171 172 5.529430 TCACATTTCTAGAAGGCGTGAAAAA 59.471 36.000 21.75 7.92 33.09 1.94
200 201 9.846248 ACAAAATTGATACTCTGAAAATGCTAC 57.154 29.630 0.00 0.00 0.00 3.58
207 208 9.283768 TGATACTCTGAAAATGCTACTTTCAAA 57.716 29.630 8.91 0.00 41.10 2.69
210 211 6.920210 ACTCTGAAAATGCTACTTTCAAAAGC 59.080 34.615 2.43 0.00 41.10 3.51
217 218 4.545610 TGCTACTTTCAAAAGCATTTCGG 58.454 39.130 2.43 0.00 41.15 4.30
218 219 4.277174 TGCTACTTTCAAAAGCATTTCGGA 59.723 37.500 2.43 0.00 41.15 4.55
224 225 2.030893 TCAAAAGCATTTCGGAGCACTG 60.031 45.455 0.00 0.00 37.28 3.66
225 226 1.896220 AAAGCATTTCGGAGCACTGA 58.104 45.000 0.00 0.00 27.08 3.41
226 227 1.896220 AAGCATTTCGGAGCACTGAA 58.104 45.000 0.78 0.78 39.31 3.02
228 229 2.440409 AGCATTTCGGAGCACTGAATT 58.560 42.857 6.22 0.45 40.49 2.17
229 230 2.821969 AGCATTTCGGAGCACTGAATTT 59.178 40.909 6.22 0.00 40.49 1.82
230 231 2.919229 GCATTTCGGAGCACTGAATTTG 59.081 45.455 6.22 8.57 40.49 2.32
233 234 4.647424 TTTCGGAGCACTGAATTTGTTT 57.353 36.364 6.22 0.00 40.49 2.83
234 235 4.647424 TTCGGAGCACTGAATTTGTTTT 57.353 36.364 0.78 0.00 36.60 2.43
235 236 4.647424 TCGGAGCACTGAATTTGTTTTT 57.353 36.364 0.00 0.00 0.00 1.94
252 253 2.500509 TTTTTGCCACGCTTTACAGG 57.499 45.000 0.00 0.00 0.00 4.00
254 255 1.681538 TTTGCCACGCTTTACAGGAA 58.318 45.000 0.00 0.00 0.00 3.36
256 257 1.164411 TGCCACGCTTTACAGGAATG 58.836 50.000 0.00 0.00 0.00 2.67
257 258 1.165270 GCCACGCTTTACAGGAATGT 58.835 50.000 0.00 0.00 0.00 2.71
258 259 1.135689 GCCACGCTTTACAGGAATGTG 60.136 52.381 0.00 0.00 0.00 3.21
259 260 2.422597 CCACGCTTTACAGGAATGTGA 58.577 47.619 0.00 0.00 0.00 3.58
261 262 3.440173 CCACGCTTTACAGGAATGTGATT 59.560 43.478 0.00 0.00 0.00 2.57
263 264 5.088739 CACGCTTTACAGGAATGTGATTTC 58.911 41.667 0.00 0.00 0.00 2.17
264 265 5.003804 ACGCTTTACAGGAATGTGATTTCT 58.996 37.500 0.00 0.00 0.00 2.52
265 266 5.473504 ACGCTTTACAGGAATGTGATTTCTT 59.526 36.000 0.00 0.00 0.00 2.52
266 267 5.796935 CGCTTTACAGGAATGTGATTTCTTG 59.203 40.000 0.00 0.00 38.33 3.02
267 268 6.348458 CGCTTTACAGGAATGTGATTTCTTGA 60.348 38.462 3.70 0.00 36.50 3.02
271 272 6.713762 ACAGGAATGTGATTTCTTGACAAA 57.286 33.333 3.70 0.00 36.50 2.83
275 276 9.048446 CAGGAATGTGATTTCTTGACAAATTTT 57.952 29.630 0.00 0.00 35.38 1.82
277 278 9.654417 GGAATGTGATTTCTTGACAAATTTTTG 57.346 29.630 1.56 1.56 43.62 2.44
278 279 9.161684 GAATGTGATTTCTTGACAAATTTTTGC 57.838 29.630 3.00 0.00 41.79 3.68
279 280 7.606858 TGTGATTTCTTGACAAATTTTTGCA 57.393 28.000 3.00 0.00 41.79 4.08
280 281 8.037382 TGTGATTTCTTGACAAATTTTTGCAA 57.963 26.923 0.00 0.00 41.79 4.08
281 282 8.176365 TGTGATTTCTTGACAAATTTTTGCAAG 58.824 29.630 21.27 21.27 44.33 4.01
282 283 7.164662 GTGATTTCTTGACAAATTTTTGCAAGC 59.835 33.333 21.88 14.57 43.61 4.01
283 284 6.740411 TTTCTTGACAAATTTTTGCAAGCT 57.260 29.167 21.88 0.00 43.61 3.74
284 285 5.971895 TCTTGACAAATTTTTGCAAGCTC 57.028 34.783 21.88 8.47 43.61 4.09
285 286 5.663456 TCTTGACAAATTTTTGCAAGCTCT 58.337 33.333 21.88 0.03 43.61 4.09
286 287 6.108015 TCTTGACAAATTTTTGCAAGCTCTT 58.892 32.000 21.88 0.00 43.61 2.85
287 288 7.264221 TCTTGACAAATTTTTGCAAGCTCTTA 58.736 30.769 21.88 11.17 43.61 2.10
288 289 7.436080 TCTTGACAAATTTTTGCAAGCTCTTAG 59.564 33.333 21.88 9.11 43.61 2.18
290 291 7.264221 TGACAAATTTTTGCAAGCTCTTAGAA 58.736 30.769 0.00 0.00 41.79 2.10
291 292 7.222611 TGACAAATTTTTGCAAGCTCTTAGAAC 59.777 33.333 0.00 0.00 41.79 3.01
292 293 7.267857 ACAAATTTTTGCAAGCTCTTAGAACT 58.732 30.769 0.00 0.00 41.79 3.01
293 294 7.765819 ACAAATTTTTGCAAGCTCTTAGAACTT 59.234 29.630 0.00 0.00 41.79 2.66
294 295 8.606602 CAAATTTTTGCAAGCTCTTAGAACTTT 58.393 29.630 0.00 0.00 0.00 2.66
298 299 5.424121 TGCAAGCTCTTAGAACTTTTGTC 57.576 39.130 0.00 0.00 0.00 3.18
300 301 5.356751 TGCAAGCTCTTAGAACTTTTGTCAA 59.643 36.000 0.00 0.00 0.00 3.18
301 302 6.039717 TGCAAGCTCTTAGAACTTTTGTCAAT 59.960 34.615 0.00 0.00 0.00 2.57
302 303 6.361748 GCAAGCTCTTAGAACTTTTGTCAATG 59.638 38.462 0.00 0.00 0.00 2.82
303 304 7.420800 CAAGCTCTTAGAACTTTTGTCAATGT 58.579 34.615 0.00 0.00 0.00 2.71
304 305 7.573968 AGCTCTTAGAACTTTTGTCAATGTT 57.426 32.000 4.72 4.72 33.94 2.71
305 306 8.000780 AGCTCTTAGAACTTTTGTCAATGTTT 57.999 30.769 6.10 0.00 31.96 2.83
306 307 8.131731 AGCTCTTAGAACTTTTGTCAATGTTTC 58.868 33.333 6.10 1.04 31.96 2.78
307 308 8.131731 GCTCTTAGAACTTTTGTCAATGTTTCT 58.868 33.333 6.10 6.96 31.96 2.52
308 309 9.657121 CTCTTAGAACTTTTGTCAATGTTTCTC 57.343 33.333 6.42 0.00 31.96 2.87
309 310 8.621286 TCTTAGAACTTTTGTCAATGTTTCTCC 58.379 33.333 6.42 0.00 31.96 3.71
310 311 5.821204 AGAACTTTTGTCAATGTTTCTCCG 58.179 37.500 6.10 0.00 31.96 4.63
311 312 5.588648 AGAACTTTTGTCAATGTTTCTCCGA 59.411 36.000 6.10 0.00 31.96 4.55
312 313 5.828299 ACTTTTGTCAATGTTTCTCCGAA 57.172 34.783 0.00 0.00 0.00 4.30
314 315 6.626302 ACTTTTGTCAATGTTTCTCCGAAAA 58.374 32.000 0.00 0.00 0.00 2.29
315 316 7.093992 ACTTTTGTCAATGTTTCTCCGAAAAA 58.906 30.769 0.00 0.00 0.00 1.94
359 360 9.672086 TTTATTTCAATTTTACTGTTCACCGAG 57.328 29.630 0.00 0.00 0.00 4.63
360 361 4.742438 TCAATTTTACTGTTCACCGAGC 57.258 40.909 0.00 0.00 0.00 5.03
361 362 4.385825 TCAATTTTACTGTTCACCGAGCT 58.614 39.130 0.00 0.00 0.00 4.09
362 363 5.543714 TCAATTTTACTGTTCACCGAGCTA 58.456 37.500 0.00 0.00 0.00 3.32
365 366 6.870971 ATTTTACTGTTCACCGAGCTAAAA 57.129 33.333 0.00 0.00 0.00 1.52
366 367 6.870971 TTTTACTGTTCACCGAGCTAAAAT 57.129 33.333 0.00 0.00 0.00 1.82
367 368 5.856126 TTACTGTTCACCGAGCTAAAATG 57.144 39.130 0.00 0.00 0.00 2.32
369 370 3.997021 ACTGTTCACCGAGCTAAAATGAG 59.003 43.478 0.00 0.00 0.00 2.90
370 371 2.742053 TGTTCACCGAGCTAAAATGAGC 59.258 45.455 0.00 0.00 43.19 4.26
371 372 2.024176 TCACCGAGCTAAAATGAGCC 57.976 50.000 0.00 0.00 43.97 4.70
372 373 1.017387 CACCGAGCTAAAATGAGCCC 58.983 55.000 0.00 0.00 43.97 5.19
373 374 0.462047 ACCGAGCTAAAATGAGCCCG 60.462 55.000 0.00 0.00 43.97 6.13
374 375 2.311294 CGAGCTAAAATGAGCCCGG 58.689 57.895 0.00 0.00 43.97 5.73
375 376 1.160329 CGAGCTAAAATGAGCCCGGG 61.160 60.000 19.09 19.09 43.97 5.73
377 378 0.623723 AGCTAAAATGAGCCCGGGAA 59.376 50.000 29.31 9.46 43.97 3.97
378 379 0.738975 GCTAAAATGAGCCCGGGAAC 59.261 55.000 29.31 17.85 36.38 3.62
380 381 2.017049 CTAAAATGAGCCCGGGAACAG 58.983 52.381 29.31 6.90 0.00 3.16
382 383 0.404040 AAATGAGCCCGGGAACAGAA 59.596 50.000 29.31 2.41 0.00 3.02
383 384 0.404040 AATGAGCCCGGGAACAGAAA 59.596 50.000 29.31 1.13 0.00 2.52
385 386 0.322456 TGAGCCCGGGAACAGAAATG 60.322 55.000 29.31 0.00 0.00 2.32
386 387 1.657751 GAGCCCGGGAACAGAAATGC 61.658 60.000 29.31 3.85 0.00 3.56
387 388 1.976474 GCCCGGGAACAGAAATGCA 60.976 57.895 29.31 0.00 0.00 3.96
388 389 1.883021 CCCGGGAACAGAAATGCAC 59.117 57.895 18.48 0.00 0.00 4.57
389 390 0.609131 CCCGGGAACAGAAATGCACT 60.609 55.000 18.48 0.00 0.00 4.40
390 391 1.247567 CCGGGAACAGAAATGCACTT 58.752 50.000 0.00 0.00 0.00 3.16
391 392 1.613437 CCGGGAACAGAAATGCACTTT 59.387 47.619 0.00 0.00 0.00 2.66
393 394 2.665519 CGGGAACAGAAATGCACTTTCG 60.666 50.000 12.75 10.97 46.53 3.46
394 395 2.293399 GGGAACAGAAATGCACTTTCGT 59.707 45.455 12.75 11.38 46.53 3.85
396 397 3.555518 GAACAGAAATGCACTTTCGTCC 58.444 45.455 12.75 3.36 46.53 4.79
397 398 2.571212 ACAGAAATGCACTTTCGTCCA 58.429 42.857 12.75 0.00 46.53 4.02
398 399 3.149196 ACAGAAATGCACTTTCGTCCAT 58.851 40.909 12.75 0.00 46.53 3.41
399 400 3.058016 ACAGAAATGCACTTTCGTCCATG 60.058 43.478 12.75 9.38 46.53 3.66
1306 1308 1.280133 CTTTCTGCTCCAGGTGATCCA 59.720 52.381 0.00 0.00 35.89 3.41
1341 1346 2.036571 GGTTTCCGGCGGAATTCGT 61.037 57.895 38.71 0.00 41.71 3.85
1625 3025 2.029073 CAGTCGTGGCGTGAGGTT 59.971 61.111 0.00 0.00 0.00 3.50
1682 3082 4.209307 GGATTTCTCCGTCTCTTTCCTT 57.791 45.455 0.00 0.00 0.00 3.36
2316 4198 1.450134 CTGCATCAGGGCTAACGCA 60.450 57.895 0.00 0.00 38.10 5.24
3035 5224 1.289160 ACTATGGTGTCCCACTGCAT 58.711 50.000 0.00 0.00 45.65 3.96
3319 5521 1.888215 CAAAGAAGCTGCTCTGTGGA 58.112 50.000 1.00 0.00 28.32 4.02
3570 5775 9.747898 ACCAGTTTTGTATGTCAATCCTAATTA 57.252 29.630 0.00 0.00 35.84 1.40
3758 7665 8.410141 TGTTTTTCTGGAATAGGTTACACTTTG 58.590 33.333 0.00 0.00 0.00 2.77
3865 7773 6.817765 TTTGCAACTTCCATAGTTCTTAGG 57.182 37.500 0.00 0.00 45.29 2.69
4176 8092 0.903942 AATGCATGGCGTGGGAAAAT 59.096 45.000 9.08 0.00 0.00 1.82
4335 8948 6.539103 CCAACTTTCTTCATACTTAGCTACCC 59.461 42.308 0.00 0.00 0.00 3.69
4339 8952 4.142790 TCTTCATACTTAGCTACCCGAGG 58.857 47.826 0.00 0.00 0.00 4.63
4383 8996 5.046663 TGTCAGTTCCACTATTGCACTGATA 60.047 40.000 13.20 9.69 40.75 2.15
4478 9093 3.617284 AGGGAGTACTTTTTAATGCCGG 58.383 45.455 0.00 0.00 0.00 6.13
4636 9252 4.814234 CAGTTAGTTCAACAACTGGTAGCA 59.186 41.667 18.06 0.00 45.08 3.49
4686 9302 6.044871 AGGCATATGAAAAGGCTATAAGGAGT 59.955 38.462 6.97 0.00 36.31 3.85
5053 9685 9.567848 GAATGTGAAAAAGTTAGTTTTGTGAGA 57.432 29.630 0.00 0.00 38.43 3.27
5055 9687 7.027161 TGTGAAAAAGTTAGTTTTGTGAGAGC 58.973 34.615 0.00 0.00 38.43 4.09
5222 9854 7.696992 TTGAAATTTTACATGGTACTCCCTC 57.303 36.000 0.00 0.00 0.00 4.30
5235 9867 5.248020 TGGTACTCCCTCCGTAAACAAATAA 59.752 40.000 0.00 0.00 0.00 1.40
5242 9874 5.182380 CCCTCCGTAAACAAATAAAAGAGCA 59.818 40.000 0.00 0.00 0.00 4.26
5245 9877 8.455682 CCTCCGTAAACAAATAAAAGAGCATTA 58.544 33.333 0.00 0.00 0.00 1.90
5246 9878 9.834628 CTCCGTAAACAAATAAAAGAGCATTAA 57.165 29.630 0.00 0.00 0.00 1.40
5295 9929 8.783660 TGCTCTTATATTTCTTTAGAGAGGGA 57.216 34.615 0.00 0.00 35.48 4.20
5321 9955 9.793259 AGTATATTACATTAATCCACCACCTTG 57.207 33.333 0.00 0.00 0.00 3.61
5322 9956 9.787435 GTATATTACATTAATCCACCACCTTGA 57.213 33.333 0.00 0.00 0.00 3.02
5493 10128 2.159327 ACCTTGTAACTGTGCGTACC 57.841 50.000 0.00 0.00 0.00 3.34
5578 10319 7.502226 TCAGTTTCATTACCATCTTGACAAACT 59.498 33.333 0.00 0.00 0.00 2.66
5618 10360 7.430992 ACAGTATGCAGCATTCAAGTATATG 57.569 36.000 14.58 3.58 42.53 1.78
5620 10362 7.172190 ACAGTATGCAGCATTCAAGTATATGTC 59.828 37.037 14.58 0.00 42.53 3.06
5738 10492 7.609760 ACATTGCTCAAGATATAAACGTTCA 57.390 32.000 0.00 0.00 0.00 3.18
5740 10494 8.124823 ACATTGCTCAAGATATAAACGTTCATG 58.875 33.333 0.00 0.00 0.00 3.07
5745 10499 7.414098 GCTCAAGATATAAACGTTCATGTGGTT 60.414 37.037 0.00 0.00 0.00 3.67
5748 10502 7.781548 AGATATAAACGTTCATGTGGTTACC 57.218 36.000 0.00 0.00 0.00 2.85
5760 10514 1.741770 GGTTACCAGCAGCGACCAG 60.742 63.158 0.00 0.00 0.00 4.00
5802 10557 2.806929 GCATGCTTGCCGGCAATA 59.193 55.556 40.03 30.79 45.68 1.90
5850 10605 7.088589 TCTTTTCATTAAGGCTGTCTATTGC 57.911 36.000 0.00 0.00 0.00 3.56
5851 10606 6.658816 TCTTTTCATTAAGGCTGTCTATTGCA 59.341 34.615 0.00 0.00 0.00 4.08
5854 10609 6.832520 TCATTAAGGCTGTCTATTGCAAAA 57.167 33.333 1.71 0.00 0.00 2.44
5860 10615 6.840780 AGGCTGTCTATTGCAAAAGTAATT 57.159 33.333 1.71 0.00 0.00 1.40
5873 10628 7.035004 TGCAAAAGTAATTCATATGCCACTTC 58.965 34.615 0.00 0.00 0.00 3.01
5969 10724 2.487762 TGAGCAAGCCGGAAAATAAGTG 59.512 45.455 5.05 0.00 0.00 3.16
6037 10793 7.750229 ATATATGGAGGTTGTGCAATACTTG 57.250 36.000 0.00 0.00 0.00 3.16
6173 10930 6.686630 TGTCTGGTAATTTGCTTGGTTTATG 58.313 36.000 0.00 0.00 0.00 1.90
6199 10956 0.307760 CGCCCCAAAATATCAGTCGC 59.692 55.000 0.00 0.00 0.00 5.19
6200 10957 0.307760 GCCCCAAAATATCAGTCGCG 59.692 55.000 0.00 0.00 0.00 5.87
6201 10958 1.948104 CCCCAAAATATCAGTCGCGA 58.052 50.000 3.71 3.71 0.00 5.87
6202 10959 1.597663 CCCCAAAATATCAGTCGCGAC 59.402 52.381 31.30 31.30 0.00 5.19
6203 10960 1.597663 CCCAAAATATCAGTCGCGACC 59.402 52.381 34.08 17.26 0.00 4.79
6204 10961 1.597663 CCAAAATATCAGTCGCGACCC 59.402 52.381 34.08 12.47 0.00 4.46
6205 10962 1.257936 CAAAATATCAGTCGCGACCCG 59.742 52.381 34.08 25.35 38.61 5.28
6235 10992 7.448420 TGATATTTTGGCAAAAATGTCCTTGA 58.552 30.769 27.25 10.29 45.85 3.02
6236 10993 7.387397 TGATATTTTGGCAAAAATGTCCTTGAC 59.613 33.333 27.25 7.92 45.85 3.18
6237 10994 3.467374 TTGGCAAAAATGTCCTTGACC 57.533 42.857 0.00 0.00 28.73 4.02
6238 10995 2.676748 TGGCAAAAATGTCCTTGACCT 58.323 42.857 0.00 0.00 28.73 3.85
6262 11033 2.093306 TGTATTCAACCTGCACTCCG 57.907 50.000 0.00 0.00 0.00 4.63
6316 11089 2.208349 ACTCCCTCCACCCTGCTT 59.792 61.111 0.00 0.00 0.00 3.91
6317 11090 1.920835 ACTCCCTCCACCCTGCTTC 60.921 63.158 0.00 0.00 0.00 3.86
6319 11092 3.732849 CCCTCCACCCTGCTTCCC 61.733 72.222 0.00 0.00 0.00 3.97
6320 11093 2.612115 CCTCCACCCTGCTTCCCT 60.612 66.667 0.00 0.00 0.00 4.20
6321 11094 2.674220 CCTCCACCCTGCTTCCCTC 61.674 68.421 0.00 0.00 0.00 4.30
6323 11096 2.935481 CCACCCTGCTTCCCTCCA 60.935 66.667 0.00 0.00 0.00 3.86
6324 11097 2.352805 CACCCTGCTTCCCTCCAC 59.647 66.667 0.00 0.00 0.00 4.02
6326 11099 2.612115 CCCTGCTTCCCTCCACCT 60.612 66.667 0.00 0.00 0.00 4.00
6328 11101 0.914417 CCCTGCTTCCCTCCACCTTA 60.914 60.000 0.00 0.00 0.00 2.69
6329 11102 0.543749 CCTGCTTCCCTCCACCTTAG 59.456 60.000 0.00 0.00 0.00 2.18
6330 11103 1.573108 CTGCTTCCCTCCACCTTAGA 58.427 55.000 0.00 0.00 0.00 2.10
6331 11104 1.484240 CTGCTTCCCTCCACCTTAGAG 59.516 57.143 0.00 0.00 0.00 2.43
6332 11105 0.179234 GCTTCCCTCCACCTTAGAGC 59.821 60.000 0.00 0.00 0.00 4.09
6333 11106 1.573108 CTTCCCTCCACCTTAGAGCA 58.427 55.000 0.00 0.00 0.00 4.26
6334 11107 2.122768 CTTCCCTCCACCTTAGAGCAT 58.877 52.381 0.00 0.00 0.00 3.79
6335 11108 1.500474 TCCCTCCACCTTAGAGCATG 58.500 55.000 0.00 0.00 0.00 4.06
6336 11109 1.207791 CCCTCCACCTTAGAGCATGT 58.792 55.000 0.00 0.00 0.00 3.21
6337 11110 2.023404 TCCCTCCACCTTAGAGCATGTA 60.023 50.000 0.00 0.00 0.00 2.29
6338 11111 2.103263 CCCTCCACCTTAGAGCATGTAC 59.897 54.545 0.00 0.00 0.00 2.90
6339 11112 2.766263 CCTCCACCTTAGAGCATGTACA 59.234 50.000 0.00 0.00 0.00 2.90
6340 11113 3.197766 CCTCCACCTTAGAGCATGTACAA 59.802 47.826 0.00 0.00 0.00 2.41
6341 11114 4.141620 CCTCCACCTTAGAGCATGTACAAT 60.142 45.833 0.00 0.00 0.00 2.71
6342 11115 4.769688 TCCACCTTAGAGCATGTACAATG 58.230 43.478 0.00 0.12 0.00 2.82
6343 11116 3.879295 CCACCTTAGAGCATGTACAATGG 59.121 47.826 0.00 0.00 0.00 3.16
6344 11117 4.517285 CACCTTAGAGCATGTACAATGGT 58.483 43.478 0.00 4.68 0.00 3.55
6345 11118 4.943705 CACCTTAGAGCATGTACAATGGTT 59.056 41.667 0.00 0.00 0.00 3.67
6346 11119 4.943705 ACCTTAGAGCATGTACAATGGTTG 59.056 41.667 0.00 0.00 0.00 3.77
6347 11120 5.185454 CCTTAGAGCATGTACAATGGTTGA 58.815 41.667 0.00 0.00 0.00 3.18
6348 11121 5.824624 CCTTAGAGCATGTACAATGGTTGAT 59.175 40.000 0.00 0.00 0.00 2.57
6349 11122 6.992123 CCTTAGAGCATGTACAATGGTTGATA 59.008 38.462 0.00 0.00 0.00 2.15
6350 11123 7.498900 CCTTAGAGCATGTACAATGGTTGATAA 59.501 37.037 0.00 5.52 0.00 1.75
6351 11124 8.800370 TTAGAGCATGTACAATGGTTGATAAA 57.200 30.769 0.00 0.00 0.00 1.40
6352 11125 7.701539 AGAGCATGTACAATGGTTGATAAAA 57.298 32.000 0.00 0.00 0.00 1.52
6353 11126 8.297470 AGAGCATGTACAATGGTTGATAAAAT 57.703 30.769 0.00 0.00 0.00 1.82
6354 11127 9.407380 AGAGCATGTACAATGGTTGATAAAATA 57.593 29.630 0.00 0.00 0.00 1.40
6355 11128 9.669353 GAGCATGTACAATGGTTGATAAAATAG 57.331 33.333 0.00 0.00 0.00 1.73
6356 11129 9.189156 AGCATGTACAATGGTTGATAAAATAGT 57.811 29.630 0.00 0.00 0.00 2.12
6357 11130 9.450807 GCATGTACAATGGTTGATAAAATAGTC 57.549 33.333 0.00 0.00 0.00 2.59
6391 11164 8.659925 AGTCTTGCATGTAATTTAGAGATGAG 57.340 34.615 0.00 0.00 0.00 2.90
6392 11165 8.481314 AGTCTTGCATGTAATTTAGAGATGAGA 58.519 33.333 0.00 0.00 0.00 3.27
6393 11166 9.102757 GTCTTGCATGTAATTTAGAGATGAGAA 57.897 33.333 0.00 0.00 0.00 2.87
6394 11167 9.671279 TCTTGCATGTAATTTAGAGATGAGAAA 57.329 29.630 0.00 0.00 0.00 2.52
6420 11193 9.972106 AAAAAGAGTCTAGAATGGATCATTTCT 57.028 29.630 0.00 12.40 33.90 2.52
6421 11194 9.972106 AAAAGAGTCTAGAATGGATCATTTCTT 57.028 29.630 12.86 5.21 33.90 2.52
6424 11197 8.367156 AGAGTCTAGAATGGATCATTTCTTAGC 58.633 37.037 12.86 5.82 33.90 3.09
6425 11198 8.261349 AGTCTAGAATGGATCATTTCTTAGCT 57.739 34.615 12.86 0.00 33.90 3.32
6426 11199 8.713036 AGTCTAGAATGGATCATTTCTTAGCTT 58.287 33.333 12.86 0.00 33.90 3.74
6427 11200 9.336171 GTCTAGAATGGATCATTTCTTAGCTTT 57.664 33.333 12.86 0.00 33.90 3.51
6460 11233 6.481954 AACTAGCTATTTCTGAAAACGTGG 57.518 37.500 6.95 0.00 0.00 4.94
6461 11234 5.548406 ACTAGCTATTTCTGAAAACGTGGT 58.452 37.500 6.95 6.08 0.00 4.16
6462 11235 4.749245 AGCTATTTCTGAAAACGTGGTG 57.251 40.909 6.95 0.00 0.00 4.17
6463 11236 4.385825 AGCTATTTCTGAAAACGTGGTGA 58.614 39.130 6.95 0.00 0.00 4.02
6464 11237 4.452455 AGCTATTTCTGAAAACGTGGTGAG 59.548 41.667 6.95 0.00 0.00 3.51
6465 11238 4.451096 GCTATTTCTGAAAACGTGGTGAGA 59.549 41.667 6.95 0.00 0.00 3.27
6466 11239 4.813296 ATTTCTGAAAACGTGGTGAGAC 57.187 40.909 6.95 0.00 0.00 3.36
6467 11240 2.971660 TCTGAAAACGTGGTGAGACA 57.028 45.000 0.00 0.00 0.00 3.41
6468 11241 3.469008 TCTGAAAACGTGGTGAGACAT 57.531 42.857 0.00 0.00 0.00 3.06
6469 11242 4.594123 TCTGAAAACGTGGTGAGACATA 57.406 40.909 0.00 0.00 0.00 2.29
6470 11243 5.147330 TCTGAAAACGTGGTGAGACATAT 57.853 39.130 0.00 0.00 0.00 1.78
6471 11244 5.547465 TCTGAAAACGTGGTGAGACATATT 58.453 37.500 0.00 0.00 0.00 1.28
6472 11245 5.408299 TCTGAAAACGTGGTGAGACATATTG 59.592 40.000 0.00 0.00 0.00 1.90
6473 11246 4.083537 TGAAAACGTGGTGAGACATATTGC 60.084 41.667 0.00 0.00 0.00 3.56
6474 11247 1.640428 ACGTGGTGAGACATATTGCG 58.360 50.000 0.00 0.00 0.00 4.85
6475 11248 0.301687 CGTGGTGAGACATATTGCGC 59.698 55.000 0.00 0.00 0.00 6.09
6476 11249 1.656652 GTGGTGAGACATATTGCGCT 58.343 50.000 9.73 0.00 0.00 5.92
6477 11250 2.798145 CGTGGTGAGACATATTGCGCTA 60.798 50.000 9.73 0.00 0.00 4.26
6478 11251 3.194861 GTGGTGAGACATATTGCGCTAA 58.805 45.455 9.73 1.22 0.00 3.09
6479 11252 3.246226 GTGGTGAGACATATTGCGCTAAG 59.754 47.826 9.73 0.00 0.00 2.18
6480 11253 3.132111 TGGTGAGACATATTGCGCTAAGA 59.868 43.478 9.73 0.00 0.00 2.10
6481 11254 3.738282 GGTGAGACATATTGCGCTAAGAG 59.262 47.826 9.73 0.00 0.00 2.85
6482 11255 4.499865 GGTGAGACATATTGCGCTAAGAGA 60.500 45.833 9.73 0.00 0.00 3.10
6483 11256 5.226396 GTGAGACATATTGCGCTAAGAGAT 58.774 41.667 9.73 0.00 0.00 2.75
6484 11257 5.344665 GTGAGACATATTGCGCTAAGAGATC 59.655 44.000 9.73 0.00 0.00 2.75
6485 11258 5.010012 TGAGACATATTGCGCTAAGAGATCA 59.990 40.000 9.73 1.44 0.00 2.92
6486 11259 6.035368 AGACATATTGCGCTAAGAGATCAT 57.965 37.500 9.73 0.00 0.00 2.45
6487 11260 6.098679 AGACATATTGCGCTAAGAGATCATC 58.901 40.000 9.73 0.00 0.00 2.92
6488 11261 6.035368 ACATATTGCGCTAAGAGATCATCT 57.965 37.500 9.73 0.00 41.27 2.90
6489 11262 6.098679 ACATATTGCGCTAAGAGATCATCTC 58.901 40.000 9.73 6.55 43.70 2.75
6523 11296 9.886132 TTCTTAAATATAAAAGAAGACGAGCCT 57.114 29.630 7.85 0.00 36.93 4.58
6524 11297 9.886132 TCTTAAATATAAAAGAAGACGAGCCTT 57.114 29.630 0.00 0.00 0.00 4.35
6528 11301 8.794335 AATATAAAAGAAGACGAGCCTTTTCT 57.206 30.769 0.00 0.00 39.77 2.52
6529 11302 6.729391 ATAAAAGAAGACGAGCCTTTTCTC 57.271 37.500 0.00 0.00 39.77 2.87
6530 11303 3.753294 AAGAAGACGAGCCTTTTCTCA 57.247 42.857 0.00 0.00 33.41 3.27
6531 11304 3.033368 AGAAGACGAGCCTTTTCTCAC 57.967 47.619 0.00 0.00 33.41 3.51
6532 11305 2.365617 AGAAGACGAGCCTTTTCTCACA 59.634 45.455 0.00 0.00 33.41 3.58
6533 11306 2.910688 AGACGAGCCTTTTCTCACAA 57.089 45.000 0.00 0.00 33.41 3.33
6534 11307 2.760374 AGACGAGCCTTTTCTCACAAG 58.240 47.619 0.00 0.00 33.41 3.16
6535 11308 2.103263 AGACGAGCCTTTTCTCACAAGT 59.897 45.455 0.00 0.00 33.41 3.16
6536 11309 2.872858 GACGAGCCTTTTCTCACAAGTT 59.127 45.455 0.00 0.00 33.41 2.66
6537 11310 2.872858 ACGAGCCTTTTCTCACAAGTTC 59.127 45.455 0.00 0.00 33.41 3.01
6538 11311 3.134458 CGAGCCTTTTCTCACAAGTTCT 58.866 45.455 0.00 0.00 33.41 3.01
6539 11312 3.185391 CGAGCCTTTTCTCACAAGTTCTC 59.815 47.826 0.00 0.00 33.41 2.87
6540 11313 4.384940 GAGCCTTTTCTCACAAGTTCTCT 58.615 43.478 0.00 0.00 33.41 3.10
6541 11314 4.384940 AGCCTTTTCTCACAAGTTCTCTC 58.615 43.478 0.00 0.00 0.00 3.20
6542 11315 4.102367 AGCCTTTTCTCACAAGTTCTCTCT 59.898 41.667 0.00 0.00 0.00 3.10
6543 11316 4.819088 GCCTTTTCTCACAAGTTCTCTCTT 59.181 41.667 0.00 0.00 0.00 2.85
6544 11317 5.049749 GCCTTTTCTCACAAGTTCTCTCTTC 60.050 44.000 0.00 0.00 0.00 2.87
6545 11318 6.287525 CCTTTTCTCACAAGTTCTCTCTTCT 58.712 40.000 0.00 0.00 0.00 2.85
6546 11319 6.423604 CCTTTTCTCACAAGTTCTCTCTTCTC 59.576 42.308 0.00 0.00 0.00 2.87
6547 11320 6.723298 TTTCTCACAAGTTCTCTCTTCTCT 57.277 37.500 0.00 0.00 0.00 3.10
6548 11321 5.703978 TCTCACAAGTTCTCTCTTCTCTG 57.296 43.478 0.00 0.00 0.00 3.35
6549 11322 5.136828 TCTCACAAGTTCTCTCTTCTCTGT 58.863 41.667 0.00 0.00 0.00 3.41
6550 11323 5.009510 TCTCACAAGTTCTCTCTTCTCTGTG 59.990 44.000 0.00 0.00 0.00 3.66
6551 11324 4.646945 TCACAAGTTCTCTCTTCTCTGTGT 59.353 41.667 0.00 0.00 0.00 3.72
6552 11325 4.981674 CACAAGTTCTCTCTTCTCTGTGTC 59.018 45.833 0.00 0.00 0.00 3.67
6553 11326 4.646945 ACAAGTTCTCTCTTCTCTGTGTCA 59.353 41.667 0.00 0.00 0.00 3.58
6554 11327 5.304101 ACAAGTTCTCTCTTCTCTGTGTCAT 59.696 40.000 0.00 0.00 0.00 3.06
6555 11328 5.643379 AGTTCTCTCTTCTCTGTGTCATC 57.357 43.478 0.00 0.00 0.00 2.92
6556 11329 5.076182 AGTTCTCTCTTCTCTGTGTCATCA 58.924 41.667 0.00 0.00 0.00 3.07
6557 11330 5.716228 AGTTCTCTCTTCTCTGTGTCATCAT 59.284 40.000 0.00 0.00 0.00 2.45
6558 11331 6.889177 AGTTCTCTCTTCTCTGTGTCATCATA 59.111 38.462 0.00 0.00 0.00 2.15
6559 11332 7.560991 AGTTCTCTCTTCTCTGTGTCATCATAT 59.439 37.037 0.00 0.00 0.00 1.78
6560 11333 8.845227 GTTCTCTCTTCTCTGTGTCATCATATA 58.155 37.037 0.00 0.00 0.00 0.86
6561 11334 9.585369 TTCTCTCTTCTCTGTGTCATCATATAT 57.415 33.333 0.00 0.00 0.00 0.86
6562 11335 9.230122 TCTCTCTTCTCTGTGTCATCATATATC 57.770 37.037 0.00 0.00 0.00 1.63
6563 11336 8.347004 TCTCTTCTCTGTGTCATCATATATCC 57.653 38.462 0.00 0.00 0.00 2.59
6564 11337 8.169393 TCTCTTCTCTGTGTCATCATATATCCT 58.831 37.037 0.00 0.00 0.00 3.24
6565 11338 9.460019 CTCTTCTCTGTGTCATCATATATCCTA 57.540 37.037 0.00 0.00 0.00 2.94
6566 11339 9.237187 TCTTCTCTGTGTCATCATATATCCTAC 57.763 37.037 0.00 0.00 0.00 3.18
6567 11340 8.940397 TTCTCTGTGTCATCATATATCCTACA 57.060 34.615 0.00 0.00 0.00 2.74
6568 11341 9.539194 TTCTCTGTGTCATCATATATCCTACAT 57.461 33.333 0.00 0.00 0.00 2.29
6574 11347 9.723447 GTGTCATCATATATCCTACATAACTCG 57.277 37.037 0.00 0.00 0.00 4.18
6575 11348 9.462606 TGTCATCATATATCCTACATAACTCGT 57.537 33.333 0.00 0.00 0.00 4.18
6597 11370 8.570096 TCGTAAGATAACACTATTGTACATGC 57.430 34.615 0.00 0.00 45.01 4.06
6697 11473 1.378646 TGTCGGCGAGTCTGGATCT 60.379 57.895 11.20 0.00 0.00 2.75
6709 11485 3.957497 AGTCTGGATCTAGTGGCTGTTAG 59.043 47.826 5.93 0.00 0.00 2.34
6710 11486 3.702045 GTCTGGATCTAGTGGCTGTTAGT 59.298 47.826 5.93 0.00 0.00 2.24
6711 11487 3.954904 TCTGGATCTAGTGGCTGTTAGTC 59.045 47.826 5.93 0.00 0.00 2.59
6712 11488 3.031736 TGGATCTAGTGGCTGTTAGTCC 58.968 50.000 0.00 0.00 0.00 3.85
6713 11489 2.034812 GGATCTAGTGGCTGTTAGTCCG 59.965 54.545 0.00 0.00 0.00 4.79
6714 11490 1.471119 TCTAGTGGCTGTTAGTCCGG 58.529 55.000 0.00 0.00 0.00 5.14
6715 11491 1.005097 TCTAGTGGCTGTTAGTCCGGA 59.995 52.381 0.00 0.00 0.00 5.14
6716 11492 1.134560 CTAGTGGCTGTTAGTCCGGAC 59.865 57.143 27.67 27.67 0.00 4.79
6717 11493 1.445582 GTGGCTGTTAGTCCGGACG 60.446 63.158 28.26 15.06 36.20 4.79
6718 11494 2.508663 GGCTGTTAGTCCGGACGC 60.509 66.667 28.26 23.46 36.20 5.19
6719 11495 2.879462 GCTGTTAGTCCGGACGCG 60.879 66.667 28.26 16.25 36.20 6.01
6720 11496 2.564975 CTGTTAGTCCGGACGCGT 59.435 61.111 28.26 13.85 36.20 6.01
6721 11497 1.796151 CTGTTAGTCCGGACGCGTA 59.204 57.895 28.26 13.28 36.20 4.42
6722 11498 0.247974 CTGTTAGTCCGGACGCGTAG 60.248 60.000 28.26 20.31 36.20 3.51
6723 11499 1.063166 GTTAGTCCGGACGCGTAGG 59.937 63.158 28.26 22.79 36.20 3.18
6724 11500 1.078497 TTAGTCCGGACGCGTAGGA 60.078 57.895 28.26 26.06 36.20 2.94
6725 11501 0.464373 TTAGTCCGGACGCGTAGGAT 60.464 55.000 30.29 22.39 36.34 3.24
6726 11502 0.392706 TAGTCCGGACGCGTAGGATA 59.607 55.000 30.29 21.63 36.34 2.59
6727 11503 0.883814 AGTCCGGACGCGTAGGATAG 60.884 60.000 30.29 12.16 36.34 2.08
6728 11504 2.254651 CCGGACGCGTAGGATAGC 59.745 66.667 24.01 5.38 0.00 2.97
6729 11505 2.254651 CGGACGCGTAGGATAGCC 59.745 66.667 13.97 6.23 0.00 3.93
6730 11506 2.649614 GGACGCGTAGGATAGCCC 59.350 66.667 13.97 1.80 33.31 5.19
6731 11507 2.254651 GACGCGTAGGATAGCCCG 59.745 66.667 13.97 0.00 40.87 6.13
6732 11508 3.264866 GACGCGTAGGATAGCCCGG 62.265 68.421 13.97 0.00 40.87 5.73
6733 11509 2.981909 CGCGTAGGATAGCCCGGA 60.982 66.667 0.73 0.00 40.87 5.14
6734 11510 2.649614 GCGTAGGATAGCCCGGAC 59.350 66.667 0.73 0.00 40.87 4.79
6735 11511 2.952245 CGTAGGATAGCCCGGACG 59.048 66.667 0.73 0.00 40.79 4.79
6736 11512 2.649614 GTAGGATAGCCCGGACGC 59.350 66.667 0.73 0.00 40.87 5.19
6737 11513 2.981909 TAGGATAGCCCGGACGCG 60.982 66.667 0.73 3.53 40.87 6.01
6738 11514 3.779850 TAGGATAGCCCGGACGCGT 62.780 63.158 13.85 13.85 40.87 6.01
6739 11515 2.395988 TAGGATAGCCCGGACGCGTA 62.396 60.000 13.97 0.00 40.87 4.42
6740 11516 2.254651 GATAGCCCGGACGCGTAG 59.745 66.667 13.97 9.82 0.00 3.51
6741 11517 3.264866 GATAGCCCGGACGCGTAGG 62.265 68.421 22.10 22.10 0.00 3.18
6742 11518 3.779850 ATAGCCCGGACGCGTAGGA 62.780 63.158 28.27 13.47 0.00 2.94
6748 11524 3.752339 GGACGCGTAGGACCCGTT 61.752 66.667 13.97 0.00 35.06 4.44
6749 11525 2.505557 GACGCGTAGGACCCGTTG 60.506 66.667 13.97 0.00 35.06 4.10
6750 11526 3.976902 GACGCGTAGGACCCGTTGG 62.977 68.421 13.97 0.00 35.06 3.77
6753 11529 4.807039 CGTAGGACCCGTTGGCCG 62.807 72.222 0.00 0.00 34.23 6.13
6754 11530 3.698820 GTAGGACCCGTTGGCCGT 61.699 66.667 0.00 0.00 34.23 5.68
6755 11531 3.697747 TAGGACCCGTTGGCCGTG 61.698 66.667 0.00 0.00 34.23 4.94
6763 11539 3.475774 GTTGGCCGTGACGCGTAG 61.476 66.667 13.97 6.82 39.32 3.51
6764 11540 3.672447 TTGGCCGTGACGCGTAGA 61.672 61.111 13.97 0.00 39.32 2.59
6765 11541 3.210223 TTGGCCGTGACGCGTAGAA 62.210 57.895 13.97 0.00 39.32 2.10
6766 11542 2.202703 GGCCGTGACGCGTAGAAT 60.203 61.111 13.97 0.00 39.32 2.40
6767 11543 1.064621 GGCCGTGACGCGTAGAATA 59.935 57.895 13.97 0.00 39.32 1.75
6825 11619 1.681666 CAGAGGCTGTGATGGTGGT 59.318 57.895 5.59 0.00 0.00 4.16
6830 11624 1.557269 GGCTGTGATGGTGGTCCTCT 61.557 60.000 0.00 0.00 34.23 3.69
6831 11625 0.107945 GCTGTGATGGTGGTCCTCTC 60.108 60.000 0.00 0.00 34.23 3.20
6846 11640 3.123620 CTCGGTGCTGCAGCTTCC 61.124 66.667 36.61 32.73 42.66 3.46
6912 11728 3.643792 GCTCCTCCTATTATCTGTGGTGT 59.356 47.826 0.00 0.00 0.00 4.16
6944 11760 5.880332 GGATCTGGTGCTATACTTTGTTCAA 59.120 40.000 0.00 0.00 0.00 2.69
6948 11764 4.704540 TGGTGCTATACTTTGTTCAATGGG 59.295 41.667 4.07 0.00 0.00 4.00
7077 11895 7.067008 GGTTATAGTCTATGTGCAATTGTGGTT 59.933 37.037 7.40 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.055040 AGCTCAGGTGCAGAAACTCT 58.945 50.000 0.00 0.00 34.99 3.24
4 5 1.134128 TGAACAGCTCAGGTGCAGAAA 60.134 47.619 3.01 0.00 34.04 2.52
6 7 0.250038 GTGAACAGCTCAGGTGCAGA 60.250 55.000 3.01 0.00 33.60 4.26
7 8 1.233285 GGTGAACAGCTCAGGTGCAG 61.233 60.000 3.01 0.00 33.60 4.41
8 9 1.227943 GGTGAACAGCTCAGGTGCA 60.228 57.895 3.01 0.00 33.60 4.57
9 10 2.320587 CGGTGAACAGCTCAGGTGC 61.321 63.158 3.01 0.00 33.60 5.01
10 11 0.668706 CTCGGTGAACAGCTCAGGTG 60.669 60.000 1.16 1.16 33.60 4.00
11 12 1.668294 CTCGGTGAACAGCTCAGGT 59.332 57.895 2.70 0.00 33.60 4.00
12 13 1.739562 GCTCGGTGAACAGCTCAGG 60.740 63.158 2.70 0.00 33.60 3.86
13 14 1.291588 AGCTCGGTGAACAGCTCAG 59.708 57.895 2.70 0.25 42.60 3.35
14 15 3.459823 AGCTCGGTGAACAGCTCA 58.540 55.556 2.70 0.00 42.60 4.26
17 18 1.739562 CCTGAGCTCGGTGAACAGC 60.740 63.158 21.06 0.00 35.73 4.40
18 19 0.108898 CTCCTGAGCTCGGTGAACAG 60.109 60.000 21.06 5.60 0.00 3.16
19 20 1.967535 CTCCTGAGCTCGGTGAACA 59.032 57.895 21.06 2.88 0.00 3.18
20 21 4.900154 CTCCTGAGCTCGGTGAAC 57.100 61.111 21.06 0.00 0.00 3.18
30 31 0.831966 AGCTCATTCCTGCTCCTGAG 59.168 55.000 0.00 0.00 38.49 3.35
36 37 1.992277 ACCCGAGCTCATTCCTGCT 60.992 57.895 15.40 0.00 42.82 4.24
38 39 0.250234 TTCACCCGAGCTCATTCCTG 59.750 55.000 15.40 1.19 0.00 3.86
39 40 0.250513 GTTCACCCGAGCTCATTCCT 59.749 55.000 15.40 0.00 0.00 3.36
42 43 0.687354 ACTGTTCACCCGAGCTCATT 59.313 50.000 15.40 0.00 0.00 2.57
44 45 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
45 46 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
46 47 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
48 49 5.682943 TTTGATTTTACTGTTCACCCGAG 57.317 39.130 0.00 0.00 0.00 4.63
100 101 8.655970 AGCACTTAAAACTTTTGTCAATGTTTC 58.344 29.630 13.86 5.09 38.61 2.78
102 103 8.442384 CAAGCACTTAAAACTTTTGTCAATGTT 58.558 29.630 0.00 0.00 32.90 2.71
103 104 7.412891 GCAAGCACTTAAAACTTTTGTCAATGT 60.413 33.333 0.00 0.00 0.00 2.71
104 105 6.901357 GCAAGCACTTAAAACTTTTGTCAATG 59.099 34.615 0.00 0.00 0.00 2.82
106 107 5.928839 TGCAAGCACTTAAAACTTTTGTCAA 59.071 32.000 0.00 0.00 0.00 3.18
107 108 5.473931 TGCAAGCACTTAAAACTTTTGTCA 58.526 33.333 0.00 0.00 0.00 3.58
109 110 6.793492 TTTGCAAGCACTTAAAACTTTTGT 57.207 29.167 0.00 0.00 0.00 2.83
110 111 8.672214 ATTTTTGCAAGCACTTAAAACTTTTG 57.328 26.923 0.00 0.00 0.00 2.44
111 112 9.340695 GAATTTTTGCAAGCACTTAAAACTTTT 57.659 25.926 0.00 0.00 0.00 2.27
112 113 7.691877 CGAATTTTTGCAAGCACTTAAAACTTT 59.308 29.630 0.00 0.00 0.00 2.66
115 116 6.474364 ACGAATTTTTGCAAGCACTTAAAAC 58.526 32.000 0.00 0.00 0.00 2.43
117 118 6.654793 AACGAATTTTTGCAAGCACTTAAA 57.345 29.167 0.00 0.00 0.00 1.52
119 120 6.473521 CAAAACGAATTTTTGCAAGCACTTA 58.526 32.000 0.00 0.00 45.81 2.24
120 121 5.323105 CAAAACGAATTTTTGCAAGCACTT 58.677 33.333 0.00 0.00 45.81 3.16
121 122 4.896080 CAAAACGAATTTTTGCAAGCACT 58.104 34.783 0.00 0.00 45.81 4.40
123 124 7.624974 TGATTTCAAAACGAATTTTTGCAAGCA 60.625 29.630 8.15 8.15 46.99 3.91
143 144 5.351465 TCACGCCTTCTAGAAATGTGATTTC 59.649 40.000 21.20 0.00 46.90 2.17
144 145 5.245531 TCACGCCTTCTAGAAATGTGATTT 58.754 37.500 21.20 2.29 34.64 2.17
146 147 4.471904 TCACGCCTTCTAGAAATGTGAT 57.528 40.909 21.20 7.02 30.61 3.06
147 148 3.953712 TCACGCCTTCTAGAAATGTGA 57.046 42.857 21.20 21.20 32.93 3.58
148 149 5.356882 TTTTCACGCCTTCTAGAAATGTG 57.643 39.130 18.44 18.44 30.92 3.21
174 175 9.846248 GTAGCATTTTCAGAGTATCAATTTTGT 57.154 29.630 0.00 0.00 37.82 2.83
179 180 9.453572 TGAAAGTAGCATTTTCAGAGTATCAAT 57.546 29.630 6.29 0.00 39.05 2.57
180 181 8.846943 TGAAAGTAGCATTTTCAGAGTATCAA 57.153 30.769 6.29 0.00 39.05 2.57
185 186 6.920210 GCTTTTGAAAGTAGCATTTTCAGAGT 59.080 34.615 5.47 0.00 43.22 3.24
186 187 6.919662 TGCTTTTGAAAGTAGCATTTTCAGAG 59.080 34.615 0.45 11.39 43.22 3.35
187 188 6.804677 TGCTTTTGAAAGTAGCATTTTCAGA 58.195 32.000 0.45 4.38 43.22 3.27
196 197 4.794169 TCCGAAATGCTTTTGAAAGTAGC 58.206 39.130 1.76 0.00 38.28 3.58
197 198 4.853743 GCTCCGAAATGCTTTTGAAAGTAG 59.146 41.667 1.76 0.00 38.28 2.57
199 200 3.068024 TGCTCCGAAATGCTTTTGAAAGT 59.932 39.130 1.76 0.00 38.28 2.66
200 201 3.426525 GTGCTCCGAAATGCTTTTGAAAG 59.573 43.478 1.76 0.00 39.03 2.62
201 202 3.068024 AGTGCTCCGAAATGCTTTTGAAA 59.932 39.130 1.76 0.00 0.00 2.69
203 204 2.030893 CAGTGCTCCGAAATGCTTTTGA 60.031 45.455 1.76 0.00 0.00 2.69
204 205 2.030893 TCAGTGCTCCGAAATGCTTTTG 60.031 45.455 1.76 0.00 0.00 2.44
207 208 1.896220 TTCAGTGCTCCGAAATGCTT 58.104 45.000 0.00 0.00 0.00 3.91
208 209 2.119801 ATTCAGTGCTCCGAAATGCT 57.880 45.000 0.00 0.00 0.00 3.79
209 210 2.919229 CAAATTCAGTGCTCCGAAATGC 59.081 45.455 0.00 0.00 0.00 3.56
210 211 4.164822 ACAAATTCAGTGCTCCGAAATG 57.835 40.909 0.00 0.00 0.00 2.32
211 212 4.853924 AACAAATTCAGTGCTCCGAAAT 57.146 36.364 0.00 0.00 0.00 2.17
213 214 4.647424 AAAACAAATTCAGTGCTCCGAA 57.353 36.364 0.00 0.00 0.00 4.30
214 215 4.647424 AAAAACAAATTCAGTGCTCCGA 57.353 36.364 0.00 0.00 0.00 4.55
233 234 2.025155 TCCTGTAAAGCGTGGCAAAAA 58.975 42.857 0.00 0.00 0.00 1.94
234 235 1.681538 TCCTGTAAAGCGTGGCAAAA 58.318 45.000 0.00 0.00 0.00 2.44
235 236 1.681538 TTCCTGTAAAGCGTGGCAAA 58.318 45.000 0.00 0.00 0.00 3.68
236 237 1.539388 CATTCCTGTAAAGCGTGGCAA 59.461 47.619 0.00 0.00 0.00 4.52
237 238 1.164411 CATTCCTGTAAAGCGTGGCA 58.836 50.000 0.00 0.00 0.00 4.92
238 239 1.135689 CACATTCCTGTAAAGCGTGGC 60.136 52.381 0.00 0.00 33.14 5.01
239 240 2.422597 TCACATTCCTGTAAAGCGTGG 58.577 47.619 0.00 0.00 33.14 4.94
240 241 4.685169 AATCACATTCCTGTAAAGCGTG 57.315 40.909 0.00 0.00 33.14 5.34
241 242 5.003804 AGAAATCACATTCCTGTAAAGCGT 58.996 37.500 0.00 0.00 33.14 5.07
242 243 5.551760 AGAAATCACATTCCTGTAAAGCG 57.448 39.130 0.00 0.00 33.14 4.68
243 244 6.803807 GTCAAGAAATCACATTCCTGTAAAGC 59.196 38.462 0.00 0.00 33.14 3.51
245 246 7.815840 TGTCAAGAAATCACATTCCTGTAAA 57.184 32.000 0.00 0.00 33.14 2.01
246 247 7.815840 TTGTCAAGAAATCACATTCCTGTAA 57.184 32.000 0.00 0.00 33.14 2.41
247 248 7.815840 TTTGTCAAGAAATCACATTCCTGTA 57.184 32.000 0.00 0.00 33.14 2.74
248 249 6.713762 TTTGTCAAGAAATCACATTCCTGT 57.286 33.333 0.00 0.00 35.44 4.00
249 250 8.597662 AAATTTGTCAAGAAATCACATTCCTG 57.402 30.769 0.00 0.00 0.00 3.86
252 253 9.161684 GCAAAAATTTGTCAAGAAATCACATTC 57.838 29.630 7.64 0.00 40.24 2.67
254 255 8.211116 TGCAAAAATTTGTCAAGAAATCACAT 57.789 26.923 7.64 0.00 40.24 3.21
256 257 7.164662 GCTTGCAAAAATTTGTCAAGAAATCAC 59.835 33.333 27.67 15.63 44.94 3.06
257 258 7.066043 AGCTTGCAAAAATTTGTCAAGAAATCA 59.934 29.630 27.67 8.88 44.94 2.57
258 259 7.412063 AGCTTGCAAAAATTTGTCAAGAAATC 58.588 30.769 27.67 18.02 44.94 2.17
259 260 7.281549 AGAGCTTGCAAAAATTTGTCAAGAAAT 59.718 29.630 27.67 19.24 44.94 2.17
261 262 6.108015 AGAGCTTGCAAAAATTTGTCAAGAA 58.892 32.000 27.67 9.65 44.94 2.52
263 264 5.978934 AGAGCTTGCAAAAATTTGTCAAG 57.021 34.783 23.53 23.53 44.94 3.02
264 265 7.264221 TCTAAGAGCTTGCAAAAATTTGTCAA 58.736 30.769 0.00 10.27 40.24 3.18
265 266 6.804677 TCTAAGAGCTTGCAAAAATTTGTCA 58.195 32.000 0.00 3.93 40.24 3.58
266 267 7.436376 AGTTCTAAGAGCTTGCAAAAATTTGTC 59.564 33.333 0.00 1.63 40.24 3.18
267 268 7.267857 AGTTCTAAGAGCTTGCAAAAATTTGT 58.732 30.769 0.00 0.00 40.24 2.83
271 272 7.765819 ACAAAAGTTCTAAGAGCTTGCAAAAAT 59.234 29.630 0.00 0.00 33.62 1.82
275 276 5.356751 TGACAAAAGTTCTAAGAGCTTGCAA 59.643 36.000 0.00 0.00 33.62 4.08
277 278 5.424121 TGACAAAAGTTCTAAGAGCTTGC 57.576 39.130 0.00 0.00 33.62 4.01
278 279 7.420800 ACATTGACAAAAGTTCTAAGAGCTTG 58.579 34.615 0.00 0.00 33.62 4.01
279 280 7.573968 ACATTGACAAAAGTTCTAAGAGCTT 57.426 32.000 0.00 0.00 34.73 3.74
280 281 7.573968 AACATTGACAAAAGTTCTAAGAGCT 57.426 32.000 0.00 0.00 0.00 4.09
281 282 8.131731 AGAAACATTGACAAAAGTTCTAAGAGC 58.868 33.333 9.09 0.00 0.00 4.09
282 283 9.657121 GAGAAACATTGACAAAAGTTCTAAGAG 57.343 33.333 9.09 0.00 0.00 2.85
283 284 8.621286 GGAGAAACATTGACAAAAGTTCTAAGA 58.379 33.333 9.09 0.00 0.00 2.10
284 285 7.587757 CGGAGAAACATTGACAAAAGTTCTAAG 59.412 37.037 9.09 4.80 0.00 2.18
285 286 7.281324 TCGGAGAAACATTGACAAAAGTTCTAA 59.719 33.333 9.09 0.00 0.00 2.10
286 287 6.764085 TCGGAGAAACATTGACAAAAGTTCTA 59.236 34.615 9.09 0.00 0.00 2.10
287 288 5.588648 TCGGAGAAACATTGACAAAAGTTCT 59.411 36.000 9.09 9.17 0.00 3.01
288 289 5.816919 TCGGAGAAACATTGACAAAAGTTC 58.183 37.500 9.09 5.33 0.00 3.01
290 291 5.828299 TTCGGAGAAACATTGACAAAAGT 57.172 34.783 0.00 0.00 45.90 2.66
291 292 7.518731 TTTTTCGGAGAAACATTGACAAAAG 57.481 32.000 0.00 0.00 45.90 2.27
333 334 9.672086 CTCGGTGAACAGTAAAATTGAAATAAA 57.328 29.630 0.00 0.00 0.00 1.40
334 335 7.806014 GCTCGGTGAACAGTAAAATTGAAATAA 59.194 33.333 0.00 0.00 0.00 1.40
335 336 7.174253 AGCTCGGTGAACAGTAAAATTGAAATA 59.826 33.333 0.00 0.00 0.00 1.40
337 338 5.298276 AGCTCGGTGAACAGTAAAATTGAAA 59.702 36.000 0.00 0.00 0.00 2.69
338 339 4.819630 AGCTCGGTGAACAGTAAAATTGAA 59.180 37.500 0.00 0.00 0.00 2.69
340 341 4.749245 AGCTCGGTGAACAGTAAAATTG 57.251 40.909 0.00 0.00 0.00 2.32
341 342 6.870971 TTTAGCTCGGTGAACAGTAAAATT 57.129 33.333 0.00 0.00 0.00 1.82
342 343 6.870971 TTTTAGCTCGGTGAACAGTAAAAT 57.129 33.333 0.00 0.00 0.00 1.82
345 346 5.543714 TCATTTTAGCTCGGTGAACAGTAA 58.456 37.500 0.00 0.00 0.00 2.24
346 347 5.142061 TCATTTTAGCTCGGTGAACAGTA 57.858 39.130 0.00 0.00 0.00 2.74
347 348 3.997021 CTCATTTTAGCTCGGTGAACAGT 59.003 43.478 0.00 0.00 0.00 3.55
351 352 2.356135 GGCTCATTTTAGCTCGGTGAA 58.644 47.619 0.00 0.00 42.37 3.18
353 354 1.017387 GGGCTCATTTTAGCTCGGTG 58.983 55.000 0.00 0.00 42.37 4.94
354 355 3.478540 GGGCTCATTTTAGCTCGGT 57.521 52.632 0.00 0.00 42.37 4.69
357 358 0.180406 TCCCGGGCTCATTTTAGCTC 59.820 55.000 18.49 0.00 42.37 4.09
358 359 0.623723 TTCCCGGGCTCATTTTAGCT 59.376 50.000 18.49 0.00 42.37 3.32
359 360 0.738975 GTTCCCGGGCTCATTTTAGC 59.261 55.000 18.49 0.00 41.99 3.09
360 361 2.017049 CTGTTCCCGGGCTCATTTTAG 58.983 52.381 18.49 1.20 0.00 1.85
361 362 1.631388 TCTGTTCCCGGGCTCATTTTA 59.369 47.619 18.49 0.00 0.00 1.52
362 363 0.404040 TCTGTTCCCGGGCTCATTTT 59.596 50.000 18.49 0.00 0.00 1.82
365 366 0.625849 ATTTCTGTTCCCGGGCTCAT 59.374 50.000 18.49 0.00 0.00 2.90
366 367 0.322456 CATTTCTGTTCCCGGGCTCA 60.322 55.000 18.49 16.20 0.00 4.26
367 368 1.657751 GCATTTCTGTTCCCGGGCTC 61.658 60.000 18.49 11.93 0.00 4.70
369 370 1.976474 TGCATTTCTGTTCCCGGGC 60.976 57.895 18.49 2.59 0.00 6.13
370 371 0.609131 AGTGCATTTCTGTTCCCGGG 60.609 55.000 16.85 16.85 0.00 5.73
371 372 1.247567 AAGTGCATTTCTGTTCCCGG 58.752 50.000 0.00 0.00 0.00 5.73
372 373 2.665519 CGAAAGTGCATTTCTGTTCCCG 60.666 50.000 15.12 0.00 44.39 5.14
373 374 2.293399 ACGAAAGTGCATTTCTGTTCCC 59.707 45.455 15.12 0.00 46.97 3.97
374 375 3.626028 ACGAAAGTGCATTTCTGTTCC 57.374 42.857 15.12 0.00 46.97 3.62
388 389 2.744202 CAAGGGAAGACATGGACGAAAG 59.256 50.000 0.00 0.00 0.00 2.62
389 390 2.552155 CCAAGGGAAGACATGGACGAAA 60.552 50.000 0.00 0.00 34.82 3.46
390 391 1.003118 CCAAGGGAAGACATGGACGAA 59.997 52.381 0.00 0.00 34.82 3.85
391 392 0.613260 CCAAGGGAAGACATGGACGA 59.387 55.000 0.00 0.00 34.82 4.20
393 394 1.680249 GCTCCAAGGGAAGACATGGAC 60.680 57.143 0.00 0.00 37.05 4.02
394 395 0.620556 GCTCCAAGGGAAGACATGGA 59.379 55.000 0.00 0.00 39.57 3.41
396 397 0.036010 ACGCTCCAAGGGAAGACATG 60.036 55.000 0.00 0.00 31.91 3.21
397 398 0.250513 GACGCTCCAAGGGAAGACAT 59.749 55.000 0.00 0.00 31.91 3.06
398 399 0.832135 AGACGCTCCAAGGGAAGACA 60.832 55.000 0.00 0.00 31.91 3.41
399 400 0.390472 CAGACGCTCCAAGGGAAGAC 60.390 60.000 0.00 0.00 31.91 3.01
486 488 3.978687 AGAAAAGACGTGTCATCTTCGT 58.021 40.909 0.00 0.00 35.31 3.85
1319 1321 0.107361 AATTCCGCCGGAAACCCTAG 60.107 55.000 24.10 0.00 45.41 3.02
1341 1346 3.154473 CCTCGGCGAATCCCCTCA 61.154 66.667 12.13 0.00 0.00 3.86
2134 3747 6.748333 AATATCCACTTCACATTCACACAG 57.252 37.500 0.00 0.00 0.00 3.66
2316 4198 6.594788 AATGATTAACTGTTGAGTGCCATT 57.405 33.333 2.69 2.20 30.61 3.16
3035 5224 4.864806 GTCTCATACAGCTCACGAATCAAA 59.135 41.667 0.00 0.00 0.00 2.69
3570 5775 4.082245 CCTGCACCGATTTTCCTTACATTT 60.082 41.667 0.00 0.00 0.00 2.32
3758 7665 9.178427 GCATAATCATAAAGAGCTTCACATTTC 57.822 33.333 0.00 0.00 0.00 2.17
3828 7736 7.395772 TGGAAGTTGCAAATGTAATCTATGGAA 59.604 33.333 0.00 0.00 0.00 3.53
3865 7773 3.616379 GTCATAGCTTGCAACTGAGAGAC 59.384 47.826 0.00 0.00 0.00 3.36
4076 7992 5.984926 CACAGTGCAGAAACATAAAAATGGT 59.015 36.000 0.00 0.00 0.00 3.55
4176 8092 5.486063 TCCCACTTAGAAGGCAATGTTAGTA 59.514 40.000 0.00 0.00 0.00 1.82
4335 8948 1.343465 ACAGTGACTAACCCAACCTCG 59.657 52.381 0.00 0.00 0.00 4.63
4339 8952 5.148651 ACATAGACAGTGACTAACCCAAC 57.851 43.478 6.42 0.00 0.00 3.77
4383 8996 9.498176 AAGTAAATACCGTTGTTTCAATAGTCT 57.502 29.630 0.00 0.00 0.00 3.24
4478 9093 5.643379 TGATAAAGGGCACTTCAATTCAC 57.357 39.130 0.00 0.00 35.41 3.18
4636 9252 1.760405 AGTGAATTTCCAGGGTCCCT 58.240 50.000 3.85 3.85 0.00 4.20
4686 9302 8.068892 GGAAGAAAGTTCTTACCTCTATCTGA 57.931 38.462 6.29 0.00 46.84 3.27
4840 9457 9.494271 GCATGGTCTAGATTCATTAGTTAATCA 57.506 33.333 0.00 0.00 35.07 2.57
5053 9685 5.760253 GGTACAATGCTTGATATAGTGTGCT 59.240 40.000 0.00 0.00 0.00 4.40
5055 9687 5.470098 GGGGTACAATGCTTGATATAGTGTG 59.530 44.000 0.00 0.00 0.00 3.82
5066 9698 5.823861 AATTTTGAAGGGGTACAATGCTT 57.176 34.783 0.00 0.00 0.00 3.91
5069 9701 6.107901 TGGAAATTTTGAAGGGGTACAATG 57.892 37.500 0.00 0.00 0.00 2.82
5213 9845 7.603784 TCTTTTATTTGTTTACGGAGGGAGTAC 59.396 37.037 0.00 0.00 0.00 2.73
5222 9854 9.834628 TCTTAATGCTCTTTTATTTGTTTACGG 57.165 29.630 0.00 0.00 0.00 4.02
5270 9902 8.783660 TCCCTCTCTAAAGAAATATAAGAGCA 57.216 34.615 0.00 0.00 34.89 4.26
5271 9903 8.866093 ACTCCCTCTCTAAAGAAATATAAGAGC 58.134 37.037 0.00 0.00 34.89 4.09
5295 9929 9.793259 CAAGGTGGTGGATTAATGTAATATACT 57.207 33.333 0.00 0.00 0.00 2.12
5320 9954 5.593909 AGAAGTCACCAAACAAATGTCATCA 59.406 36.000 0.00 0.00 0.00 3.07
5321 9955 6.076981 AGAAGTCACCAAACAAATGTCATC 57.923 37.500 0.00 0.00 0.00 2.92
5322 9956 7.581213 TTAGAAGTCACCAAACAAATGTCAT 57.419 32.000 0.00 0.00 0.00 3.06
5475 10110 2.157834 TGGTACGCACAGTTACAAGG 57.842 50.000 0.00 0.00 0.00 3.61
5493 10128 2.225019 GGCTGTCAACTCTCACAACATG 59.775 50.000 0.00 0.00 0.00 3.21
5578 10319 8.846943 TGCATACTGTTCTTTAAGAATCAAGA 57.153 30.769 10.77 3.07 36.50 3.02
5618 10360 5.577164 CGATCATTATAGTTTCCCATCCGAC 59.423 44.000 0.00 0.00 0.00 4.79
5620 10362 5.720202 TCGATCATTATAGTTTCCCATCCG 58.280 41.667 0.00 0.00 0.00 4.18
5668 10422 7.391833 GTGATGAAAAAGACTATCCTTGGAAGT 59.608 37.037 0.00 0.00 0.00 3.01
5733 10487 1.464608 CTGCTGGTAACCACATGAACG 59.535 52.381 0.00 0.00 0.00 3.95
5738 10492 0.673644 GTCGCTGCTGGTAACCACAT 60.674 55.000 0.00 0.00 0.00 3.21
5740 10494 2.033194 GGTCGCTGCTGGTAACCAC 61.033 63.158 0.00 0.00 0.00 4.16
5745 10499 1.877576 CTCACTGGTCGCTGCTGGTA 61.878 60.000 0.00 0.00 0.00 3.25
5748 10502 1.082679 CATCTCACTGGTCGCTGCTG 61.083 60.000 0.00 0.00 0.00 4.41
5760 10514 7.117523 GCCATATCATCAGTTACTTCATCTCAC 59.882 40.741 0.00 0.00 0.00 3.51
5798 10553 8.357796 ACTATCACACGACATCATCTTTATTG 57.642 34.615 0.00 0.00 0.00 1.90
5802 10557 8.417106 AGATAACTATCACACGACATCATCTTT 58.583 33.333 0.00 0.00 35.17 2.52
5850 10605 9.294030 GAAGAAGTGGCATATGAATTACTTTTG 57.706 33.333 6.97 0.00 0.00 2.44
5851 10606 8.470002 GGAAGAAGTGGCATATGAATTACTTTT 58.530 33.333 6.97 3.48 0.00 2.27
5854 10609 6.662755 TGGAAGAAGTGGCATATGAATTACT 58.337 36.000 6.97 1.56 0.00 2.24
5860 10615 2.846206 ACCTGGAAGAAGTGGCATATGA 59.154 45.455 6.97 0.00 34.07 2.15
5873 10628 1.962807 TGGATTTGCAACACCTGGAAG 59.037 47.619 18.04 0.00 36.63 3.46
5922 10677 4.718940 TCTCATTGCTAGTTGTCGATGA 57.281 40.909 0.00 0.00 33.41 2.92
5969 10724 5.927115 CCCATCTTCGCCTATTAACTACTTC 59.073 44.000 0.00 0.00 0.00 3.01
6037 10793 5.295787 TCCATCTATGTCGTTTGTTTATGCC 59.704 40.000 0.00 0.00 0.00 4.40
6173 10930 2.656698 ATATTTTGGGGCGGGGGAGC 62.657 60.000 0.00 0.00 0.00 4.70
6199 10956 3.548014 GCCAAAATATCATTCACGGGTCG 60.548 47.826 0.00 0.00 0.00 4.79
6200 10957 3.380004 TGCCAAAATATCATTCACGGGTC 59.620 43.478 0.00 0.00 0.00 4.46
6201 10958 3.360867 TGCCAAAATATCATTCACGGGT 58.639 40.909 0.00 0.00 0.00 5.28
6202 10959 4.383850 TTGCCAAAATATCATTCACGGG 57.616 40.909 0.00 0.00 0.00 5.28
6203 10960 6.718454 TTTTTGCCAAAATATCATTCACGG 57.282 33.333 3.01 0.00 0.00 4.94
6204 10961 7.741198 ACATTTTTGCCAAAATATCATTCACG 58.259 30.769 8.07 0.00 40.09 4.35
6205 10962 8.177013 GGACATTTTTGCCAAAATATCATTCAC 58.823 33.333 14.17 0.00 40.09 3.18
6285 11056 0.390998 GGGAGTGCAAGAGTGAGAGC 60.391 60.000 0.00 0.00 0.00 4.09
6316 11089 1.273838 ACATGCTCTAAGGTGGAGGGA 60.274 52.381 0.00 0.00 0.00 4.20
6317 11090 1.207791 ACATGCTCTAAGGTGGAGGG 58.792 55.000 0.00 0.00 0.00 4.30
6319 11092 4.471904 TTGTACATGCTCTAAGGTGGAG 57.528 45.455 0.00 0.00 0.00 3.86
6320 11093 4.384098 CCATTGTACATGCTCTAAGGTGGA 60.384 45.833 0.00 0.00 0.00 4.02
6321 11094 3.879295 CCATTGTACATGCTCTAAGGTGG 59.121 47.826 0.00 0.00 0.00 4.61
6323 11096 4.844349 ACCATTGTACATGCTCTAAGGT 57.156 40.909 0.00 0.00 0.00 3.50
6324 11097 5.185454 TCAACCATTGTACATGCTCTAAGG 58.815 41.667 0.00 0.00 0.00 2.69
6326 11099 8.800370 TTTATCAACCATTGTACATGCTCTAA 57.200 30.769 0.00 0.00 0.00 2.10
6328 11101 7.701539 TTTTATCAACCATTGTACATGCTCT 57.298 32.000 0.00 0.00 0.00 4.09
6329 11102 9.669353 CTATTTTATCAACCATTGTACATGCTC 57.331 33.333 0.00 0.00 0.00 4.26
6330 11103 9.189156 ACTATTTTATCAACCATTGTACATGCT 57.811 29.630 0.00 0.00 0.00 3.79
6331 11104 9.450807 GACTATTTTATCAACCATTGTACATGC 57.549 33.333 0.00 0.00 0.00 4.06
6365 11138 9.107177 CTCATCTCTAAATTACATGCAAGACTT 57.893 33.333 0.00 0.00 0.00 3.01
6366 11139 8.481314 TCTCATCTCTAAATTACATGCAAGACT 58.519 33.333 0.00 0.00 0.00 3.24
6367 11140 8.654230 TCTCATCTCTAAATTACATGCAAGAC 57.346 34.615 0.00 0.00 0.00 3.01
6368 11141 9.671279 TTTCTCATCTCTAAATTACATGCAAGA 57.329 29.630 0.00 0.00 0.00 3.02
6394 11167 9.972106 AGAAATGATCCATTCTAGACTCTTTTT 57.028 29.630 8.01 0.00 32.43 1.94
6395 11168 9.972106 AAGAAATGATCCATTCTAGACTCTTTT 57.028 29.630 9.71 0.00 32.43 2.27
6398 11171 8.367156 GCTAAGAAATGATCCATTCTAGACTCT 58.633 37.037 9.71 0.00 32.43 3.24
6399 11172 8.367156 AGCTAAGAAATGATCCATTCTAGACTC 58.633 37.037 9.71 1.32 32.43 3.36
6400 11173 8.261349 AGCTAAGAAATGATCCATTCTAGACT 57.739 34.615 9.71 5.80 32.43 3.24
6401 11174 8.900983 AAGCTAAGAAATGATCCATTCTAGAC 57.099 34.615 9.71 4.11 32.43 2.59
6434 11207 8.665685 CCACGTTTTCAGAAATAGCTAGTTATT 58.334 33.333 6.39 6.05 0.00 1.40
6435 11208 7.822822 ACCACGTTTTCAGAAATAGCTAGTTAT 59.177 33.333 6.39 0.00 0.00 1.89
6436 11209 7.117236 CACCACGTTTTCAGAAATAGCTAGTTA 59.883 37.037 6.39 0.00 0.00 2.24
6437 11210 5.995897 ACCACGTTTTCAGAAATAGCTAGTT 59.004 36.000 6.06 6.06 0.00 2.24
6438 11211 5.408604 CACCACGTTTTCAGAAATAGCTAGT 59.591 40.000 0.00 0.00 0.00 2.57
6439 11212 5.637810 TCACCACGTTTTCAGAAATAGCTAG 59.362 40.000 0.00 0.00 0.00 3.42
6440 11213 5.543714 TCACCACGTTTTCAGAAATAGCTA 58.456 37.500 0.00 0.00 0.00 3.32
6441 11214 4.385825 TCACCACGTTTTCAGAAATAGCT 58.614 39.130 0.00 0.00 0.00 3.32
6442 11215 4.451096 TCTCACCACGTTTTCAGAAATAGC 59.549 41.667 0.00 0.00 0.00 2.97
6443 11216 5.465390 TGTCTCACCACGTTTTCAGAAATAG 59.535 40.000 0.00 0.00 0.00 1.73
6444 11217 5.361427 TGTCTCACCACGTTTTCAGAAATA 58.639 37.500 0.00 0.00 0.00 1.40
6445 11218 4.196193 TGTCTCACCACGTTTTCAGAAAT 58.804 39.130 0.00 0.00 0.00 2.17
6446 11219 3.601435 TGTCTCACCACGTTTTCAGAAA 58.399 40.909 0.00 0.00 0.00 2.52
6447 11220 3.254470 TGTCTCACCACGTTTTCAGAA 57.746 42.857 0.00 0.00 0.00 3.02
6448 11221 2.971660 TGTCTCACCACGTTTTCAGA 57.028 45.000 0.00 0.00 0.00 3.27
6449 11222 5.621422 CAATATGTCTCACCACGTTTTCAG 58.379 41.667 0.00 0.00 0.00 3.02
6450 11223 4.083537 GCAATATGTCTCACCACGTTTTCA 60.084 41.667 0.00 0.00 0.00 2.69
6451 11224 4.403453 GCAATATGTCTCACCACGTTTTC 58.597 43.478 0.00 0.00 0.00 2.29
6452 11225 3.120338 CGCAATATGTCTCACCACGTTTT 60.120 43.478 0.00 0.00 0.00 2.43
6453 11226 2.415168 CGCAATATGTCTCACCACGTTT 59.585 45.455 0.00 0.00 0.00 3.60
6454 11227 1.999735 CGCAATATGTCTCACCACGTT 59.000 47.619 0.00 0.00 0.00 3.99
6455 11228 1.640428 CGCAATATGTCTCACCACGT 58.360 50.000 0.00 0.00 0.00 4.49
6456 11229 0.301687 GCGCAATATGTCTCACCACG 59.698 55.000 0.30 0.00 0.00 4.94
6457 11230 1.656652 AGCGCAATATGTCTCACCAC 58.343 50.000 11.47 0.00 0.00 4.16
6458 11231 3.132111 TCTTAGCGCAATATGTCTCACCA 59.868 43.478 11.47 0.00 0.00 4.17
6459 11232 3.717707 TCTTAGCGCAATATGTCTCACC 58.282 45.455 11.47 0.00 0.00 4.02
6460 11233 4.611943 TCTCTTAGCGCAATATGTCTCAC 58.388 43.478 11.47 0.00 0.00 3.51
6461 11234 4.918810 TCTCTTAGCGCAATATGTCTCA 57.081 40.909 11.47 0.00 0.00 3.27
6462 11235 5.465051 TGATCTCTTAGCGCAATATGTCTC 58.535 41.667 11.47 0.00 0.00 3.36
6463 11236 5.459536 TGATCTCTTAGCGCAATATGTCT 57.540 39.130 11.47 0.00 0.00 3.41
6464 11237 6.098679 AGATGATCTCTTAGCGCAATATGTC 58.901 40.000 11.47 0.00 0.00 3.06
6465 11238 6.035368 AGATGATCTCTTAGCGCAATATGT 57.965 37.500 11.47 0.00 0.00 2.29
6466 11239 6.572153 GAGATGATCTCTTAGCGCAATATG 57.428 41.667 14.98 0.00 40.30 1.78
6497 11270 9.886132 AGGCTCGTCTTCTTTTATATTTAAGAA 57.114 29.630 10.00 10.00 37.88 2.52
6498 11271 9.886132 AAGGCTCGTCTTCTTTTATATTTAAGA 57.114 29.630 0.00 0.00 0.00 2.10
6502 11275 9.232473 AGAAAAGGCTCGTCTTCTTTTATATTT 57.768 29.630 0.00 0.00 39.78 1.40
6503 11276 8.794335 AGAAAAGGCTCGTCTTCTTTTATATT 57.206 30.769 0.00 0.00 39.78 1.28
6504 11277 8.041323 TGAGAAAAGGCTCGTCTTCTTTTATAT 58.959 33.333 1.83 0.00 39.78 0.86
6505 11278 7.331193 GTGAGAAAAGGCTCGTCTTCTTTTATA 59.669 37.037 1.83 0.00 39.78 0.98
6506 11279 6.147985 GTGAGAAAAGGCTCGTCTTCTTTTAT 59.852 38.462 1.83 0.00 39.78 1.40
6507 11280 5.465724 GTGAGAAAAGGCTCGTCTTCTTTTA 59.534 40.000 1.83 0.00 39.78 1.52
6508 11281 4.273724 GTGAGAAAAGGCTCGTCTTCTTTT 59.726 41.667 0.00 0.00 41.59 2.27
6509 11282 3.810386 GTGAGAAAAGGCTCGTCTTCTTT 59.190 43.478 1.83 0.00 37.73 2.52
6510 11283 3.181465 TGTGAGAAAAGGCTCGTCTTCTT 60.181 43.478 1.83 0.00 37.73 2.52
6511 11284 2.365617 TGTGAGAAAAGGCTCGTCTTCT 59.634 45.455 1.83 1.92 37.73 2.85
6512 11285 2.755650 TGTGAGAAAAGGCTCGTCTTC 58.244 47.619 1.83 0.00 37.73 2.87
6513 11286 2.910688 TGTGAGAAAAGGCTCGTCTT 57.089 45.000 1.83 0.00 37.73 3.01
6514 11287 2.103263 ACTTGTGAGAAAAGGCTCGTCT 59.897 45.455 0.00 0.00 37.73 4.18
6515 11288 2.484889 ACTTGTGAGAAAAGGCTCGTC 58.515 47.619 0.00 0.00 37.73 4.20
6516 11289 2.622064 ACTTGTGAGAAAAGGCTCGT 57.378 45.000 0.00 0.00 37.73 4.18
6517 11290 3.134458 AGAACTTGTGAGAAAAGGCTCG 58.866 45.455 0.00 0.00 37.73 5.03
6518 11291 4.384940 AGAGAACTTGTGAGAAAAGGCTC 58.615 43.478 0.00 0.00 33.72 4.70
6519 11292 4.102367 AGAGAGAACTTGTGAGAAAAGGCT 59.898 41.667 0.00 0.00 0.00 4.58
6520 11293 4.384940 AGAGAGAACTTGTGAGAAAAGGC 58.615 43.478 0.00 0.00 0.00 4.35
6521 11294 6.287525 AGAAGAGAGAACTTGTGAGAAAAGG 58.712 40.000 0.00 0.00 0.00 3.11
6522 11295 7.169645 CAGAGAAGAGAGAACTTGTGAGAAAAG 59.830 40.741 0.00 0.00 0.00 2.27
6523 11296 6.983307 CAGAGAAGAGAGAACTTGTGAGAAAA 59.017 38.462 0.00 0.00 0.00 2.29
6524 11297 6.097554 ACAGAGAAGAGAGAACTTGTGAGAAA 59.902 38.462 0.00 0.00 0.00 2.52
6525 11298 5.596361 ACAGAGAAGAGAGAACTTGTGAGAA 59.404 40.000 0.00 0.00 0.00 2.87
6526 11299 5.009510 CACAGAGAAGAGAGAACTTGTGAGA 59.990 44.000 0.00 0.00 0.00 3.27
6527 11300 5.221224 ACACAGAGAAGAGAGAACTTGTGAG 60.221 44.000 8.12 0.00 30.26 3.51
6528 11301 4.646945 ACACAGAGAAGAGAGAACTTGTGA 59.353 41.667 8.12 0.00 30.26 3.58
6529 11302 4.942852 ACACAGAGAAGAGAGAACTTGTG 58.057 43.478 0.00 0.00 0.00 3.33
6530 11303 4.646945 TGACACAGAGAAGAGAGAACTTGT 59.353 41.667 0.00 0.00 0.00 3.16
6531 11304 5.193663 TGACACAGAGAAGAGAGAACTTG 57.806 43.478 0.00 0.00 0.00 3.16
6532 11305 5.538053 TGATGACACAGAGAAGAGAGAACTT 59.462 40.000 0.00 0.00 0.00 2.66
6533 11306 5.076182 TGATGACACAGAGAAGAGAGAACT 58.924 41.667 0.00 0.00 0.00 3.01
6534 11307 5.384063 TGATGACACAGAGAAGAGAGAAC 57.616 43.478 0.00 0.00 0.00 3.01
6535 11308 7.894753 ATATGATGACACAGAGAAGAGAGAA 57.105 36.000 0.00 0.00 0.00 2.87
6536 11309 9.230122 GATATATGATGACACAGAGAAGAGAGA 57.770 37.037 0.00 0.00 0.00 3.10
6537 11310 8.461222 GGATATATGATGACACAGAGAAGAGAG 58.539 40.741 0.00 0.00 0.00 3.20
6538 11311 8.169393 AGGATATATGATGACACAGAGAAGAGA 58.831 37.037 0.00 0.00 0.00 3.10
6539 11312 8.352137 AGGATATATGATGACACAGAGAAGAG 57.648 38.462 0.00 0.00 0.00 2.85
6540 11313 9.237187 GTAGGATATATGATGACACAGAGAAGA 57.763 37.037 0.00 0.00 0.00 2.87
6541 11314 9.018582 TGTAGGATATATGATGACACAGAGAAG 57.981 37.037 0.00 0.00 0.00 2.85
6542 11315 8.940397 TGTAGGATATATGATGACACAGAGAA 57.060 34.615 0.00 0.00 0.00 2.87
6548 11321 9.723447 CGAGTTATGTAGGATATATGATGACAC 57.277 37.037 0.00 0.00 0.00 3.67
6549 11322 9.462606 ACGAGTTATGTAGGATATATGATGACA 57.537 33.333 0.00 0.00 0.00 3.58
6560 11333 9.352191 AGTGTTATCTTACGAGTTATGTAGGAT 57.648 33.333 0.00 3.74 40.44 3.24
6561 11334 8.743085 AGTGTTATCTTACGAGTTATGTAGGA 57.257 34.615 0.00 0.00 33.25 2.94
6570 11343 9.731819 CATGTACAATAGTGTTATCTTACGAGT 57.268 33.333 0.00 0.00 39.30 4.18
6571 11344 8.691727 GCATGTACAATAGTGTTATCTTACGAG 58.308 37.037 0.00 0.00 39.30 4.18
6572 11345 7.650504 GGCATGTACAATAGTGTTATCTTACGA 59.349 37.037 0.00 0.00 39.30 3.43
6573 11346 7.095774 GGGCATGTACAATAGTGTTATCTTACG 60.096 40.741 0.00 0.00 39.30 3.18
6574 11347 7.931948 AGGGCATGTACAATAGTGTTATCTTAC 59.068 37.037 0.00 0.00 39.30 2.34
6575 11348 8.029782 AGGGCATGTACAATAGTGTTATCTTA 57.970 34.615 0.00 0.00 39.30 2.10
6576 11349 6.900194 AGGGCATGTACAATAGTGTTATCTT 58.100 36.000 0.00 0.00 39.30 2.40
6577 11350 6.500589 AGGGCATGTACAATAGTGTTATCT 57.499 37.500 0.00 0.00 39.30 1.98
6578 11351 7.172703 GGTAAGGGCATGTACAATAGTGTTATC 59.827 40.741 0.00 0.00 39.30 1.75
6579 11352 6.996282 GGTAAGGGCATGTACAATAGTGTTAT 59.004 38.462 0.00 0.00 39.30 1.89
6580 11353 6.157297 AGGTAAGGGCATGTACAATAGTGTTA 59.843 38.462 0.00 0.00 39.30 2.41
6581 11354 5.045140 AGGTAAGGGCATGTACAATAGTGTT 60.045 40.000 0.00 0.00 39.30 3.32
6582 11355 4.473559 AGGTAAGGGCATGTACAATAGTGT 59.526 41.667 0.00 0.00 42.09 3.55
6583 11356 5.036117 AGGTAAGGGCATGTACAATAGTG 57.964 43.478 0.00 0.00 0.00 2.74
6584 11357 4.202223 CGAGGTAAGGGCATGTACAATAGT 60.202 45.833 0.00 0.00 0.00 2.12
6585 11358 4.307432 CGAGGTAAGGGCATGTACAATAG 58.693 47.826 0.00 0.00 0.00 1.73
6586 11359 3.070446 CCGAGGTAAGGGCATGTACAATA 59.930 47.826 0.00 0.00 0.00 1.90
6587 11360 2.158813 CCGAGGTAAGGGCATGTACAAT 60.159 50.000 0.00 0.00 0.00 2.71
6588 11361 1.208535 CCGAGGTAAGGGCATGTACAA 59.791 52.381 0.00 0.00 0.00 2.41
6589 11362 0.828022 CCGAGGTAAGGGCATGTACA 59.172 55.000 0.00 0.00 0.00 2.90
6590 11363 3.680842 CCGAGGTAAGGGCATGTAC 57.319 57.895 0.00 0.00 0.00 2.90
6597 11370 2.511600 CGCAAGCCGAGGTAAGGG 60.512 66.667 0.00 0.00 40.02 3.95
6648 11424 2.295349 GTGACTCACCACCGACTAAGAA 59.705 50.000 0.00 0.00 0.00 2.52
6697 11473 1.180029 GTCCGGACTAACAGCCACTA 58.820 55.000 27.64 0.00 0.00 2.74
6709 11485 1.573436 CTATCCTACGCGTCCGGAC 59.427 63.158 26.39 25.28 39.22 4.79
6710 11486 2.256591 GCTATCCTACGCGTCCGGA 61.257 63.158 26.15 26.15 39.22 5.14
6711 11487 2.254651 GCTATCCTACGCGTCCGG 59.745 66.667 18.63 18.54 39.22 5.14
6712 11488 2.254651 GGCTATCCTACGCGTCCG 59.745 66.667 18.63 8.47 41.14 4.79
6713 11489 2.649614 GGGCTATCCTACGCGTCC 59.350 66.667 18.63 9.01 0.00 4.79
6714 11490 2.254651 CGGGCTATCCTACGCGTC 59.745 66.667 18.63 0.00 37.44 5.19
6715 11491 3.292936 CCGGGCTATCCTACGCGT 61.293 66.667 19.17 19.17 40.23 6.01
6716 11492 2.981909 TCCGGGCTATCCTACGCG 60.982 66.667 3.53 3.53 41.36 6.01
6717 11493 2.649614 GTCCGGGCTATCCTACGC 59.350 66.667 0.00 0.00 0.00 4.42
6718 11494 2.952245 CGTCCGGGCTATCCTACG 59.048 66.667 3.66 0.00 36.64 3.51
6719 11495 2.649614 GCGTCCGGGCTATCCTAC 59.350 66.667 3.66 0.00 0.00 3.18
6720 11496 2.395988 TACGCGTCCGGGCTATCCTA 62.396 60.000 18.63 0.00 39.22 2.94
6721 11497 3.779850 TACGCGTCCGGGCTATCCT 62.780 63.158 18.63 0.00 39.22 3.24
6722 11498 3.264866 CTACGCGTCCGGGCTATCC 62.265 68.421 18.63 0.00 39.22 2.59
6723 11499 2.254651 CTACGCGTCCGGGCTATC 59.745 66.667 18.63 0.00 39.22 2.08
6724 11500 3.292936 CCTACGCGTCCGGGCTAT 61.293 66.667 18.63 0.00 39.22 2.97
6725 11501 4.488136 TCCTACGCGTCCGGGCTA 62.488 66.667 18.63 0.00 39.22 3.93
6736 11512 4.807039 CGGCCAACGGGTCCTACG 62.807 72.222 2.24 0.00 34.31 3.51
6753 11529 1.596464 CCGGACTATTCTACGCGTCAC 60.596 57.143 18.63 0.00 0.00 3.67
6754 11530 0.659427 CCGGACTATTCTACGCGTCA 59.341 55.000 18.63 0.00 0.00 4.35
6755 11531 0.940126 TCCGGACTATTCTACGCGTC 59.060 55.000 18.63 0.00 0.00 5.19
6756 11532 0.659957 GTCCGGACTATTCTACGCGT 59.340 55.000 27.64 19.17 0.00 6.01
6757 11533 0.383983 CGTCCGGACTATTCTACGCG 60.384 60.000 30.92 11.09 0.00 6.01
6758 11534 3.451504 CGTCCGGACTATTCTACGC 57.548 57.895 30.92 1.97 0.00 4.42
6759 11535 0.383983 CGCGTCCGGACTATTCTACG 60.384 60.000 30.92 17.49 0.00 3.51
6760 11536 0.659957 ACGCGTCCGGACTATTCTAC 59.340 55.000 30.92 11.03 39.22 2.59
6761 11537 2.138320 CTACGCGTCCGGACTATTCTA 58.862 52.381 30.92 12.36 39.22 2.10
6762 11538 0.942962 CTACGCGTCCGGACTATTCT 59.057 55.000 30.92 11.89 39.22 2.40
6763 11539 0.040603 CCTACGCGTCCGGACTATTC 60.041 60.000 30.92 16.13 39.22 1.75
6764 11540 0.464373 TCCTACGCGTCCGGACTATT 60.464 55.000 30.92 16.99 39.22 1.73
6765 11541 1.146930 TCCTACGCGTCCGGACTAT 59.853 57.895 30.92 18.41 39.22 2.12
6766 11542 1.815421 GTCCTACGCGTCCGGACTA 60.815 63.158 34.96 16.40 42.99 2.59
6767 11543 3.130160 GTCCTACGCGTCCGGACT 61.130 66.667 34.96 16.13 42.99 3.85
6805 11581 1.002990 CACCATCACAGCCTCTGCA 60.003 57.895 0.00 0.00 41.13 4.41
6806 11582 1.748122 CCACCATCACAGCCTCTGC 60.748 63.158 0.00 0.00 34.37 4.26
6809 11585 1.078143 GGACCACCATCACAGCCTC 60.078 63.158 0.00 0.00 35.97 4.70
6810 11586 1.539869 AGGACCACCATCACAGCCT 60.540 57.895 0.00 0.00 38.94 4.58
6830 11624 3.596066 GAGGAAGCTGCAGCACCGA 62.596 63.158 38.24 0.00 45.16 4.69
6831 11625 3.123620 GAGGAAGCTGCAGCACCG 61.124 66.667 38.24 3.04 45.16 4.94
6846 11640 2.439701 TCCCTACACGGCGAGGAG 60.440 66.667 16.62 12.77 34.46 3.69
6912 11728 0.252421 AGCACCAGATCCACCAGAGA 60.252 55.000 0.00 0.00 0.00 3.10
7062 11880 3.255642 GGAGTACAACCACAATTGCACAT 59.744 43.478 5.05 0.00 29.58 3.21
7063 11881 2.621055 GGAGTACAACCACAATTGCACA 59.379 45.455 5.05 0.00 29.58 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.