Multiple sequence alignment - TraesCS7D01G221600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G221600 chr7D 100.000 6399 0 0 1 6399 182601319 182607717 0.000000e+00 11817.0
1 TraesCS7D01G221600 chr7D 82.609 391 68 0 1085 1475 182602343 182602733 4.750000e-91 346.0
2 TraesCS7D01G221600 chr7D 82.609 391 68 0 1025 1415 182602403 182602793 4.750000e-91 346.0
3 TraesCS7D01G221600 chr7D 99.145 117 1 0 4032 4148 247324144 247324260 1.810000e-50 211.0
4 TraesCS7D01G221600 chr7D 96.581 117 4 0 4032 4148 628410932 628411048 1.820000e-45 195.0
5 TraesCS7D01G221600 chr7D 92.424 66 2 1 6329 6394 182607741 182607803 2.460000e-14 91.6
6 TraesCS7D01G221600 chr7B 95.164 3784 130 28 263 4033 151158696 151162439 0.000000e+00 5925.0
7 TraesCS7D01G221600 chr7B 96.392 2079 61 7 4146 6214 151162437 151164511 0.000000e+00 3411.0
8 TraesCS7D01G221600 chr7B 81.888 392 71 0 1024 1415 151159492 151159883 1.330000e-86 331.0
9 TraesCS7D01G221600 chr7B 93.671 79 4 1 126 204 151156021 151156098 4.050000e-22 117.0
10 TraesCS7D01G221600 chr7B 85.263 95 13 1 6210 6303 590507969 590508063 5.280000e-16 97.1
11 TraesCS7D01G221600 chr7A 94.959 3511 145 14 320 3819 189009496 189006007 0.000000e+00 5474.0
12 TraesCS7D01G221600 chr7A 95.562 2073 73 10 4146 6214 189004561 189002504 0.000000e+00 3301.0
13 TraesCS7D01G221600 chr7A 96.861 223 6 1 3811 4033 189004780 189004559 7.840000e-99 372.0
14 TraesCS7D01G221600 chr7A 80.344 407 80 0 1085 1491 189008793 189008387 6.230000e-80 309.0
15 TraesCS7D01G221600 chr7A 92.453 106 8 0 3 108 211211123 211211228 1.110000e-32 152.0
16 TraesCS7D01G221600 chr4A 97.541 122 3 0 4027 4148 631238735 631238614 6.500000e-50 209.0
17 TraesCS7D01G221600 chr5B 96.000 125 4 1 4032 4156 38365240 38365117 1.090000e-47 202.0
18 TraesCS7D01G221600 chr4B 97.436 117 3 0 4032 4148 562355664 562355780 3.910000e-47 200.0
19 TraesCS7D01G221600 chr4B 93.396 106 7 0 3 108 52650555 52650450 2.390000e-34 158.0
20 TraesCS7D01G221600 chr4B 90.625 96 9 0 6211 6306 75208463 75208368 1.870000e-25 128.0
21 TraesCS7D01G221600 chr1D 96.581 117 4 0 4032 4148 209564264 209564148 1.820000e-45 195.0
22 TraesCS7D01G221600 chr1D 93.396 106 7 0 3 108 478251263 478251368 2.390000e-34 158.0
23 TraesCS7D01G221600 chr3D 95.041 121 6 0 4028 4148 2403042 2403162 2.350000e-44 191.0
24 TraesCS7D01G221600 chr3D 87.629 97 12 0 6210 6306 264119563 264119659 5.240000e-21 113.0
25 TraesCS7D01G221600 chr4D 92.969 128 7 2 4026 4153 428946374 428946499 1.100000e-42 185.0
26 TraesCS7D01G221600 chr4D 93.396 106 7 0 3 108 508437861 508437966 2.390000e-34 158.0
27 TraesCS7D01G221600 chr4D 91.892 111 9 0 1 111 499460977 499460867 8.590000e-34 156.0
28 TraesCS7D01G221600 chr3B 91.111 135 11 1 4031 4164 725714430 725714296 1.420000e-41 182.0
29 TraesCS7D01G221600 chr5D 93.519 108 7 0 1 108 543593595 543593488 1.850000e-35 161.0
30 TraesCS7D01G221600 chr6D 93.396 106 7 0 3 108 400779873 400779978 2.390000e-34 158.0
31 TraesCS7D01G221600 chr6D 93.396 106 7 0 3 108 420556984 420556879 2.390000e-34 158.0
32 TraesCS7D01G221600 chr5A 93.396 106 7 0 3 108 426715261 426715156 2.390000e-34 158.0
33 TraesCS7D01G221600 chr1B 88.119 101 11 1 6207 6306 511431364 511431464 1.130000e-22 119.0
34 TraesCS7D01G221600 chr2A 86.111 108 11 3 6213 6319 18883692 18883796 5.240000e-21 113.0
35 TraesCS7D01G221600 chr2B 87.013 77 9 1 6213 6288 28787367 28787443 1.140000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G221600 chr7D 182601319 182607717 6398 False 11817 11817 100.00000 1 6399 1 chr7D.!!$F1 6398
1 TraesCS7D01G221600 chr7B 151156021 151164511 8490 False 2446 5925 91.77875 126 6214 4 chr7B.!!$F2 6088
2 TraesCS7D01G221600 chr7A 189002504 189009496 6992 True 2364 5474 91.93150 320 6214 4 chr7A.!!$R1 5894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 227 0.232303 GACGTTGAAACAGCCGTCAG 59.768 55.0 15.51 0.0 46.53 3.51 F
1083 3633 0.034767 CAGGTCAGCATGTGGATGGT 60.035 55.0 0.00 0.0 41.09 3.55 F
2155 4705 1.580845 ATCGCTGTCAGCTTGTTGCC 61.581 55.0 22.13 0.0 44.23 4.52 F
4050 7844 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.0 5.23 0.0 44.66 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 4422 0.515564 GGACGGGAAAATGTGTGTCG 59.484 55.000 0.00 0.0 0.00 4.35 R
2778 5334 3.184628 TGACAACTCCTTCATCATCCCT 58.815 45.455 0.00 0.0 0.00 4.20 R
4031 7825 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.0 46.06 2.59 R
6031 9835 0.037326 ATGGCACGACGACACAATCT 60.037 50.000 0.00 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.951227 GCAGCAAATAAGCGGCGC 60.951 61.111 26.86 26.86 45.03 6.53
37 38 2.648724 CAGCAAATAAGCGGCGCG 60.649 61.111 27.59 12.27 40.15 6.86
48 49 4.147322 CGGCGCGCGATGAAGTTT 62.147 61.111 37.18 0.00 0.00 2.66
49 50 2.276680 GGCGCGCGATGAAGTTTC 60.277 61.111 37.18 12.28 0.00 2.78
50 51 2.641663 GCGCGCGATGAAGTTTCG 60.642 61.111 37.18 0.41 39.55 3.46
51 52 2.020016 CGCGCGATGAAGTTTCGG 59.980 61.111 28.94 0.00 37.10 4.30
52 53 2.726691 CGCGCGATGAAGTTTCGGT 61.727 57.895 28.94 0.00 37.10 4.69
53 54 1.058903 GCGCGATGAAGTTTCGGTC 59.941 57.895 12.10 0.00 37.10 4.79
54 55 1.708027 CGCGATGAAGTTTCGGTCC 59.292 57.895 0.00 0.00 37.10 4.46
55 56 1.708027 GCGATGAAGTTTCGGTCCG 59.292 57.895 4.39 4.39 37.10 4.79
56 57 1.708027 CGATGAAGTTTCGGTCCGC 59.292 57.895 6.34 0.00 33.05 5.54
57 58 1.708027 GATGAAGTTTCGGTCCGCG 59.292 57.895 6.34 0.00 0.00 6.46
58 59 2.292802 GATGAAGTTTCGGTCCGCGC 62.293 60.000 6.34 0.00 0.00 6.86
59 60 4.130281 GAAGTTTCGGTCCGCGCG 62.130 66.667 25.67 25.67 0.00 6.86
67 68 4.789075 GGTCCGCGCGCTGAACTA 62.789 66.667 29.90 5.39 0.00 2.24
68 69 3.248171 GTCCGCGCGCTGAACTAG 61.248 66.667 30.48 11.45 0.00 2.57
69 70 3.436924 TCCGCGCGCTGAACTAGA 61.437 61.111 30.48 11.00 0.00 2.43
70 71 2.278857 CCGCGCGCTGAACTAGAT 60.279 61.111 30.48 0.00 0.00 1.98
71 72 1.008881 CCGCGCGCTGAACTAGATA 60.009 57.895 30.48 0.00 0.00 1.98
72 73 0.387367 CCGCGCGCTGAACTAGATAT 60.387 55.000 30.48 0.00 0.00 1.63
73 74 0.705094 CGCGCGCTGAACTAGATATG 59.295 55.000 30.48 4.24 0.00 1.78
74 75 0.436531 GCGCGCTGAACTAGATATGC 59.563 55.000 26.67 0.00 0.00 3.14
75 76 1.063806 CGCGCTGAACTAGATATGCC 58.936 55.000 5.56 0.00 0.00 4.40
76 77 1.433534 GCGCTGAACTAGATATGCCC 58.566 55.000 0.00 0.00 0.00 5.36
77 78 1.941668 GCGCTGAACTAGATATGCCCC 60.942 57.143 0.00 0.00 0.00 5.80
78 79 1.670087 CGCTGAACTAGATATGCCCCG 60.670 57.143 0.00 0.00 0.00 5.73
79 80 1.941668 GCTGAACTAGATATGCCCCGC 60.942 57.143 0.00 0.00 0.00 6.13
80 81 0.317160 TGAACTAGATATGCCCCGCG 59.683 55.000 0.00 0.00 0.00 6.46
81 82 1.004918 AACTAGATATGCCCCGCGC 60.005 57.895 0.00 0.00 38.31 6.86
82 83 2.507102 CTAGATATGCCCCGCGCG 60.507 66.667 25.67 25.67 42.08 6.86
83 84 4.735132 TAGATATGCCCCGCGCGC 62.735 66.667 27.36 23.91 42.08 6.86
115 116 4.451150 CGCTGGAGCCGGCTGTTA 62.451 66.667 38.41 18.67 45.52 2.41
116 117 2.512515 GCTGGAGCCGGCTGTTAG 60.513 66.667 38.41 27.59 44.39 2.34
117 118 3.019003 GCTGGAGCCGGCTGTTAGA 62.019 63.158 38.41 11.56 44.39 2.10
118 119 1.142748 CTGGAGCCGGCTGTTAGAG 59.857 63.158 38.41 17.48 0.00 2.43
119 120 1.304962 TGGAGCCGGCTGTTAGAGA 60.305 57.895 38.41 6.06 0.00 3.10
120 121 0.687757 TGGAGCCGGCTGTTAGAGAT 60.688 55.000 38.41 6.10 0.00 2.75
121 122 0.249657 GGAGCCGGCTGTTAGAGATG 60.250 60.000 38.41 0.00 0.00 2.90
122 123 0.878086 GAGCCGGCTGTTAGAGATGC 60.878 60.000 38.41 11.75 0.00 3.91
123 124 1.144936 GCCGGCTGTTAGAGATGCT 59.855 57.895 22.15 0.00 0.00 3.79
124 125 0.878086 GCCGGCTGTTAGAGATGCTC 60.878 60.000 22.15 0.00 0.00 4.26
140 141 5.181748 AGATGCTCTTACATTGGACTTGAC 58.818 41.667 0.00 0.00 0.00 3.18
141 142 3.674997 TGCTCTTACATTGGACTTGACC 58.325 45.455 0.00 0.00 0.00 4.02
199 200 1.997606 CGGTATCTGGGACGTTGAAAC 59.002 52.381 0.00 0.00 0.00 2.78
208 227 0.232303 GACGTTGAAACAGCCGTCAG 59.768 55.000 15.51 0.00 46.53 3.51
273 2812 3.138468 GGAGGGATGGTGGCTAATTACTT 59.862 47.826 0.00 0.00 0.00 2.24
274 2813 4.137543 GAGGGATGGTGGCTAATTACTTG 58.862 47.826 0.00 0.00 0.00 3.16
515 3062 2.750350 CTTCCCGCACTCCTTGGT 59.250 61.111 0.00 0.00 0.00 3.67
608 3155 1.274798 CGCGTTTGTTGATTGGGCAC 61.275 55.000 0.00 0.00 0.00 5.01
633 3180 1.075050 AGGCTCGAGTCCCGGATATTA 59.925 52.381 14.69 0.00 39.14 0.98
657 3204 3.617735 TGCTGGTTCGGTGCCGTA 61.618 61.111 10.60 0.00 40.74 4.02
725 3275 1.024579 GGTGGTACATGCTGTTCGGG 61.025 60.000 0.00 0.00 44.52 5.14
751 3301 1.884075 TACGTCGTGGCCATGAGCTT 61.884 55.000 28.25 16.63 43.05 3.74
767 3317 3.995506 CTTGCTAGGGTTGGGGGCG 62.996 68.421 0.00 0.00 0.00 6.13
873 3423 1.187087 GGGGAAGATGACGAGACTGT 58.813 55.000 0.00 0.00 0.00 3.55
883 3433 1.746220 GACGAGACTGTCACTGCCTAT 59.254 52.381 10.88 0.00 38.75 2.57
885 3435 1.745653 CGAGACTGTCACTGCCTATGA 59.254 52.381 10.88 0.00 0.00 2.15
903 3453 6.352565 GCCTATGATAGCTAGGATGTGGAAAT 60.353 42.308 3.53 0.00 38.44 2.17
944 3494 3.520290 TCAGGACGATGTGGTGAATAC 57.480 47.619 0.00 0.00 0.00 1.89
962 3512 8.451748 GGTGAATACCTGAATTTCTTGTCTAAC 58.548 37.037 0.00 0.00 43.97 2.34
973 3523 5.843673 TTCTTGTCTAACAATTGTTGCCA 57.156 34.783 29.72 20.23 37.48 4.92
977 3527 6.265196 TCTTGTCTAACAATTGTTGCCATTCT 59.735 34.615 29.72 7.19 37.48 2.40
978 3528 5.771469 TGTCTAACAATTGTTGCCATTCTG 58.229 37.500 29.72 11.66 38.90 3.02
979 3529 4.622740 GTCTAACAATTGTTGCCATTCTGC 59.377 41.667 29.72 8.89 38.90 4.26
984 3534 4.039004 ACAATTGTTGCCATTCTGCAGTTA 59.961 37.500 14.67 3.52 43.21 2.24
1011 3561 1.076549 GTTGGGAATGGAGGGTGCA 59.923 57.895 0.00 0.00 0.00 4.57
1080 3630 1.687014 TGCAGGTCAGCATGTGGAT 59.313 52.632 0.00 0.00 40.11 3.41
1083 3633 0.034767 CAGGTCAGCATGTGGATGGT 60.035 55.000 0.00 0.00 41.09 3.55
1183 3733 2.031012 CAGAGGCGGCTGTCAACA 59.969 61.111 19.63 0.00 0.00 3.33
1326 3876 2.031012 CAGCGTGTTGAGGGCTCA 59.969 61.111 0.00 0.00 37.91 4.26
1555 4105 5.954153 ATCCATTCAAATTTATGTGGCCA 57.046 34.783 0.00 0.00 0.00 5.36
1872 4422 2.299867 AGAATCCAACAACCATTGTGGC 59.700 45.455 0.00 0.00 44.59 5.01
2085 4635 3.193479 TCACTACATTGTGATCGCTGTCT 59.807 43.478 7.94 0.00 41.43 3.41
2115 4665 6.660521 CCATGCCATATCAATACTGTATTGGT 59.339 38.462 30.07 27.56 44.33 3.67
2155 4705 1.580845 ATCGCTGTCAGCTTGTTGCC 61.581 55.000 22.13 0.00 44.23 4.52
2156 4706 2.545596 CGCTGTCAGCTTGTTGCCA 61.546 57.895 22.13 0.00 44.23 4.92
2493 5043 7.445402 ACAAGATAACAGAACAAGCAAGTACAT 59.555 33.333 0.00 0.00 0.00 2.29
2503 5053 1.844497 AGCAAGTACATACCTTCCCCC 59.156 52.381 0.00 0.00 0.00 5.40
2553 5103 8.885722 TGCATCGGGTTAAGTTTATTTAACTAG 58.114 33.333 8.13 0.00 46.34 2.57
2574 5124 7.806180 ACTAGTCAGTGATATATTTGGCCTTT 58.194 34.615 3.32 0.00 32.25 3.11
2602 5152 6.484364 TTCATGCTATGACTGTAAGATGGA 57.516 37.500 0.00 0.00 39.39 3.41
2606 5156 8.650490 TCATGCTATGACTGTAAGATGGAATTA 58.350 33.333 0.00 0.00 37.43 1.40
3098 5655 4.019591 ACCCCCTTAGTGCTACTTTTAGTG 60.020 45.833 0.00 0.00 0.00 2.74
3099 5656 4.224370 CCCCCTTAGTGCTACTTTTAGTGA 59.776 45.833 0.00 0.00 0.00 3.41
3219 5778 9.357161 CTATAGTGGGATTACTTCTACTCTTGT 57.643 37.037 0.00 0.00 32.19 3.16
3310 5869 0.693049 GCAGGTATGGGGAGGTATGG 59.307 60.000 0.00 0.00 0.00 2.74
3343 5902 8.827177 AAGTTTCACATTGTTTCTAGATCGTA 57.173 30.769 0.00 0.00 0.00 3.43
3603 6162 6.926826 TCTCGAGTCTTAATTTGTTGCTGTTA 59.073 34.615 13.13 0.00 0.00 2.41
3604 6163 7.602644 TCTCGAGTCTTAATTTGTTGCTGTTAT 59.397 33.333 13.13 0.00 0.00 1.89
3867 7661 5.359009 ACATGAATAAGAGAGCATGTTTGGG 59.641 40.000 0.00 0.00 46.47 4.12
3959 7753 2.080693 ACTTTGGAATTATGTCGCGCA 58.919 42.857 8.75 2.86 0.00 6.09
4013 7807 1.240641 TTGCTTGTGGGTATGGCACG 61.241 55.000 0.00 0.00 32.47 5.34
4031 7825 3.058914 GCACGTTGCTAGAGTTCAATTGT 60.059 43.478 5.13 0.00 40.96 2.71
4032 7826 4.151689 GCACGTTGCTAGAGTTCAATTGTA 59.848 41.667 5.13 0.00 40.96 2.41
4033 7827 5.609088 CACGTTGCTAGAGTTCAATTGTAC 58.391 41.667 7.09 7.09 0.00 2.90
4034 7828 5.405571 CACGTTGCTAGAGTTCAATTGTACT 59.594 40.000 16.61 16.61 0.00 2.73
4035 7829 5.634020 ACGTTGCTAGAGTTCAATTGTACTC 59.366 40.000 28.31 28.31 41.10 2.59
4036 7830 5.062308 CGTTGCTAGAGTTCAATTGTACTCC 59.938 44.000 30.44 20.43 41.53 3.85
4037 7831 5.086104 TGCTAGAGTTCAATTGTACTCCC 57.914 43.478 30.44 22.26 41.53 4.30
4038 7832 4.777896 TGCTAGAGTTCAATTGTACTCCCT 59.222 41.667 30.44 20.48 41.53 4.20
4039 7833 5.105310 TGCTAGAGTTCAATTGTACTCCCTC 60.105 44.000 30.44 22.14 41.53 4.30
4040 7834 4.828072 AGAGTTCAATTGTACTCCCTCC 57.172 45.455 30.44 14.39 41.53 4.30
4041 7835 3.195825 AGAGTTCAATTGTACTCCCTCCG 59.804 47.826 30.44 0.00 41.53 4.63
4042 7836 2.904434 AGTTCAATTGTACTCCCTCCGT 59.096 45.455 11.56 0.00 0.00 4.69
4043 7837 3.056035 AGTTCAATTGTACTCCCTCCGTC 60.056 47.826 11.56 0.00 0.00 4.79
4044 7838 1.829222 TCAATTGTACTCCCTCCGTCC 59.171 52.381 5.13 0.00 0.00 4.79
4045 7839 0.822164 AATTGTACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
4046 7840 1.041447 ATTGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
4047 7841 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
4048 7842 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4049 7843 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
4050 7844 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
4051 7845 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
4052 7846 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
4053 7847 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
4054 7848 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
4055 7849 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4056 7850 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4057 7851 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4058 7852 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4059 7853 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
4060 7854 1.717194 GTCCGGAATTACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
4061 7855 1.392510 GTCCGGAATTACTTGTCGCAC 59.607 52.381 5.23 0.00 0.00 5.34
4062 7856 1.001068 TCCGGAATTACTTGTCGCACA 59.999 47.619 0.00 0.00 0.00 4.57
4063 7857 1.801771 CCGGAATTACTTGTCGCACAA 59.198 47.619 0.00 2.49 36.54 3.33
4064 7858 2.224549 CCGGAATTACTTGTCGCACAAA 59.775 45.455 0.00 0.00 37.69 2.83
4065 7859 3.119990 CCGGAATTACTTGTCGCACAAAT 60.120 43.478 0.00 0.00 37.69 2.32
4066 7860 3.845775 CGGAATTACTTGTCGCACAAATG 59.154 43.478 3.84 0.00 37.69 2.32
4067 7861 4.165779 GGAATTACTTGTCGCACAAATGG 58.834 43.478 3.84 0.00 37.69 3.16
4068 7862 4.083003 GGAATTACTTGTCGCACAAATGGA 60.083 41.667 3.84 0.00 37.69 3.41
4069 7863 5.393027 GGAATTACTTGTCGCACAAATGGAT 60.393 40.000 3.84 0.00 37.69 3.41
4070 7864 6.183360 GGAATTACTTGTCGCACAAATGGATA 60.183 38.462 3.84 0.00 37.69 2.59
4071 7865 6.751514 ATTACTTGTCGCACAAATGGATAA 57.248 33.333 3.84 0.00 37.69 1.75
4072 7866 6.561737 TTACTTGTCGCACAAATGGATAAA 57.438 33.333 3.84 0.00 37.69 1.40
4073 7867 5.446143 ACTTGTCGCACAAATGGATAAAA 57.554 34.783 3.84 0.00 37.69 1.52
4074 7868 5.837437 ACTTGTCGCACAAATGGATAAAAA 58.163 33.333 3.84 0.00 37.69 1.94
4075 7869 6.454795 ACTTGTCGCACAAATGGATAAAAAT 58.545 32.000 3.84 0.00 37.69 1.82
4076 7870 6.586082 ACTTGTCGCACAAATGGATAAAAATC 59.414 34.615 3.84 0.00 37.69 2.17
4077 7871 5.092105 TGTCGCACAAATGGATAAAAATCG 58.908 37.500 0.00 0.00 0.00 3.34
4078 7872 5.106515 TGTCGCACAAATGGATAAAAATCGA 60.107 36.000 0.00 0.00 0.00 3.59
4079 7873 5.971202 GTCGCACAAATGGATAAAAATCGAT 59.029 36.000 0.00 0.00 0.00 3.59
4080 7874 5.970612 TCGCACAAATGGATAAAAATCGATG 59.029 36.000 0.00 0.00 0.00 3.84
4081 7875 5.743398 CGCACAAATGGATAAAAATCGATGT 59.257 36.000 0.00 0.00 0.00 3.06
4082 7876 6.909895 CGCACAAATGGATAAAAATCGATGTA 59.090 34.615 0.00 0.00 0.00 2.29
4083 7877 7.591057 CGCACAAATGGATAAAAATCGATGTAT 59.409 33.333 0.00 0.00 0.00 2.29
4084 7878 8.905702 GCACAAATGGATAAAAATCGATGTATC 58.094 33.333 0.00 7.03 0.00 2.24
4090 7884 9.877178 ATGGATAAAAATCGATGTATCTAGGAC 57.123 33.333 17.12 6.92 0.00 3.85
4091 7885 9.090103 TGGATAAAAATCGATGTATCTAGGACT 57.910 33.333 17.12 0.00 0.00 3.85
4121 7915 6.332735 TGTCTAGATACATCCATTTCTCCG 57.667 41.667 0.00 0.00 0.00 4.63
4122 7916 6.068670 TGTCTAGATACATCCATTTCTCCGA 58.931 40.000 0.00 0.00 0.00 4.55
4123 7917 6.016192 TGTCTAGATACATCCATTTCTCCGAC 60.016 42.308 0.00 0.00 0.00 4.79
4124 7918 6.016192 GTCTAGATACATCCATTTCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
4125 7919 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
4126 7920 5.605534 AGATACATCCATTTCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
4127 7921 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
4128 7922 4.819105 ACATCCATTTCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
4129 7923 5.359194 ACATCCATTTCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
4130 7924 5.745227 ACATCCATTTCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
4131 7925 6.180472 ACATCCATTTCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
4132 7926 6.316390 ACATCCATTTCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
4133 7927 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
4134 7928 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
4135 7929 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
4136 7930 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
4137 7931 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
4138 7932 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
4139 7933 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4140 7934 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4141 7935 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4142 7936 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4143 7937 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4144 7938 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4145 7939 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4226 8020 3.953612 TCAAAGCTGATGTGGACAAACTT 59.046 39.130 0.00 0.00 0.00 2.66
4306 8100 1.685355 GCCTGCCCCAACTTGTTTGT 61.685 55.000 0.00 0.00 32.71 2.83
4443 8240 4.275689 TGAGATTTGCACACTCGAAACAAT 59.724 37.500 0.00 0.00 33.93 2.71
4565 8362 2.371841 TGTACTTTCTGTGGACCATGCT 59.628 45.455 0.00 0.00 0.00 3.79
4588 8385 8.959548 TGCTATATCTGTGATCATTTTGTTTGT 58.040 29.630 0.00 0.00 0.00 2.83
4678 8475 6.295802 GGTGATGAATTTTCCCTTTGAATCCA 60.296 38.462 0.00 0.00 31.67 3.41
5412 9209 1.665916 GTTGAGCTCACTCGCAGCA 60.666 57.895 18.03 0.00 46.69 4.41
5493 9290 6.040842 TGTGACTAGCTGATTATGCTATGTGA 59.959 38.462 0.00 0.00 41.45 3.58
5559 9356 4.610945 GTGCTGTATGCTTTGAAGTTGTT 58.389 39.130 0.00 0.00 43.37 2.83
5675 9472 2.711009 TCTCCTTGGTTGTCACCTGAAT 59.289 45.455 0.00 0.00 44.61 2.57
5851 9655 2.298729 TGTGAAGCAATTAACCTTGGCC 59.701 45.455 0.00 0.00 0.00 5.36
5976 9780 9.329913 CTTTGTGTATTAGTAATGTTTGTGCTC 57.670 33.333 5.61 0.00 0.00 4.26
6031 9835 1.410882 TGACGATGTGACACTGACCAA 59.589 47.619 7.20 0.00 0.00 3.67
6046 9850 1.455786 GACCAAGATTGTGTCGTCGTG 59.544 52.381 0.00 0.00 0.00 4.35
6063 9867 1.395954 CGTGCCATGATGACACAAGAG 59.604 52.381 12.24 0.00 33.89 2.85
6070 9874 3.777106 TGATGACACAAGAGGCTCTTT 57.223 42.857 26.62 13.27 33.78 2.52
6071 9875 4.090761 TGATGACACAAGAGGCTCTTTT 57.909 40.909 26.62 18.39 33.78 2.27
6073 9877 3.845781 TGACACAAGAGGCTCTTTTCT 57.154 42.857 26.62 9.02 33.78 2.52
6074 9878 3.733337 TGACACAAGAGGCTCTTTTCTC 58.267 45.455 26.62 17.70 33.78 2.87
6078 9882 3.745458 CACAAGAGGCTCTTTTCTCTGTC 59.255 47.826 26.62 0.00 39.95 3.51
6080 9884 4.835615 ACAAGAGGCTCTTTTCTCTGTCTA 59.164 41.667 26.62 0.00 39.95 2.59
6081 9885 5.483583 ACAAGAGGCTCTTTTCTCTGTCTAT 59.516 40.000 26.62 0.00 39.95 1.98
6082 9886 6.013812 ACAAGAGGCTCTTTTCTCTGTCTATT 60.014 38.462 26.62 0.00 39.95 1.73
6085 9889 7.102993 AGAGGCTCTTTTCTCTGTCTATTTTC 58.897 38.462 12.24 0.00 38.75 2.29
6131 9937 5.360999 TCTCAAATCACGATAGATCACCAGT 59.639 40.000 0.00 0.00 41.38 4.00
6169 9975 3.425577 TGAATGGCGATGCATTTCTTC 57.574 42.857 0.00 1.42 0.00 2.87
6172 9978 0.726827 TGGCGATGCATTTCTTCGAC 59.273 50.000 10.67 8.17 46.89 4.20
6203 10009 6.375736 TCAGTCACTGGATTAGTAAGAGAGTG 59.624 42.308 4.57 9.94 37.60 3.51
6208 10014 5.009210 ACTGGATTAGTAAGAGAGTGCGATC 59.991 44.000 0.00 0.00 38.04 3.69
6214 10020 4.783055 AGTAAGAGAGTGCGATCCTAAGA 58.217 43.478 0.00 0.00 0.00 2.10
6215 10021 4.819630 AGTAAGAGAGTGCGATCCTAAGAG 59.180 45.833 0.00 0.00 0.00 2.85
6216 10022 1.953686 AGAGAGTGCGATCCTAAGAGC 59.046 52.381 0.00 0.00 0.00 4.09
6217 10023 1.678627 GAGAGTGCGATCCTAAGAGCA 59.321 52.381 0.00 0.00 37.26 4.26
6218 10024 2.295909 GAGAGTGCGATCCTAAGAGCAT 59.704 50.000 0.00 0.00 41.88 3.79
6219 10025 3.491342 AGAGTGCGATCCTAAGAGCATA 58.509 45.455 0.00 0.00 41.88 3.14
6220 10026 4.085733 AGAGTGCGATCCTAAGAGCATAT 58.914 43.478 0.00 0.00 41.88 1.78
6221 10027 4.157656 AGAGTGCGATCCTAAGAGCATATC 59.842 45.833 0.00 0.00 41.88 1.63
6222 10028 3.829026 AGTGCGATCCTAAGAGCATATCA 59.171 43.478 0.00 0.00 41.88 2.15
6223 10029 4.281941 AGTGCGATCCTAAGAGCATATCAA 59.718 41.667 0.00 0.00 41.88 2.57
6224 10030 4.991056 GTGCGATCCTAAGAGCATATCAAA 59.009 41.667 0.00 0.00 41.88 2.69
6225 10031 5.641209 GTGCGATCCTAAGAGCATATCAAAT 59.359 40.000 0.00 0.00 41.88 2.32
6226 10032 6.813649 GTGCGATCCTAAGAGCATATCAAATA 59.186 38.462 0.00 0.00 41.88 1.40
6227 10033 7.009999 GTGCGATCCTAAGAGCATATCAAATAG 59.990 40.741 0.00 0.00 41.88 1.73
6228 10034 7.093771 TGCGATCCTAAGAGCATATCAAATAGA 60.094 37.037 0.00 0.00 34.39 1.98
6229 10035 7.761704 GCGATCCTAAGAGCATATCAAATAGAA 59.238 37.037 0.00 0.00 0.00 2.10
6230 10036 9.299963 CGATCCTAAGAGCATATCAAATAGAAG 57.700 37.037 0.00 0.00 0.00 2.85
6234 10040 9.941325 CCTAAGAGCATATCAAATAGAAGATGT 57.059 33.333 0.00 0.00 0.00 3.06
6240 10046 9.381033 AGCATATCAAATAGAAGATGTAGATGC 57.619 33.333 0.00 0.00 34.96 3.91
6241 10047 9.159364 GCATATCAAATAGAAGATGTAGATGCA 57.841 33.333 0.00 0.00 34.89 3.96
6252 10058 9.905713 AGAAGATGTAGATGCAAAAATACCTAA 57.094 29.630 0.00 0.00 0.00 2.69
6269 10075 8.446599 AATACCTAATTTTTACATGTCCGAGG 57.553 34.615 0.00 3.58 0.00 4.63
6270 10076 4.638865 ACCTAATTTTTACATGTCCGAGGC 59.361 41.667 0.00 0.00 0.00 4.70
6271 10077 4.036380 CCTAATTTTTACATGTCCGAGGCC 59.964 45.833 0.00 0.00 0.00 5.19
6272 10078 2.570415 TTTTTACATGTCCGAGGCCA 57.430 45.000 5.01 0.00 0.00 5.36
6273 10079 2.570415 TTTTACATGTCCGAGGCCAA 57.430 45.000 5.01 0.00 0.00 4.52
6274 10080 2.570415 TTTACATGTCCGAGGCCAAA 57.430 45.000 5.01 0.00 0.00 3.28
6275 10081 2.570415 TTACATGTCCGAGGCCAAAA 57.430 45.000 5.01 0.00 0.00 2.44
6276 10082 2.570415 TACATGTCCGAGGCCAAAAA 57.430 45.000 5.01 0.00 0.00 1.94
6277 10083 0.958822 ACATGTCCGAGGCCAAAAAC 59.041 50.000 5.01 0.00 0.00 2.43
6278 10084 0.109781 CATGTCCGAGGCCAAAAACG 60.110 55.000 5.01 2.25 0.00 3.60
6279 10085 1.862602 ATGTCCGAGGCCAAAAACGC 61.863 55.000 5.01 0.00 0.00 4.84
6285 10091 2.962569 GGCCAAAAACGCCTCTCC 59.037 61.111 0.00 0.00 43.48 3.71
6286 10092 1.901464 GGCCAAAAACGCCTCTCCA 60.901 57.895 0.00 0.00 43.48 3.86
6287 10093 1.460273 GGCCAAAAACGCCTCTCCAA 61.460 55.000 0.00 0.00 43.48 3.53
6288 10094 0.318699 GCCAAAAACGCCTCTCCAAC 60.319 55.000 0.00 0.00 0.00 3.77
6289 10095 1.028905 CCAAAAACGCCTCTCCAACA 58.971 50.000 0.00 0.00 0.00 3.33
6290 10096 1.001378 CCAAAAACGCCTCTCCAACAG 60.001 52.381 0.00 0.00 0.00 3.16
6291 10097 1.001378 CAAAAACGCCTCTCCAACAGG 60.001 52.381 0.00 0.00 0.00 4.00
6292 10098 0.182775 AAAACGCCTCTCCAACAGGT 59.817 50.000 0.00 0.00 32.98 4.00
6293 10099 0.535102 AAACGCCTCTCCAACAGGTG 60.535 55.000 0.00 0.00 45.68 4.00
6294 10100 1.407656 AACGCCTCTCCAACAGGTGA 61.408 55.000 6.29 0.00 43.30 4.02
6295 10101 1.194781 ACGCCTCTCCAACAGGTGAT 61.195 55.000 6.29 0.00 43.30 3.06
6296 10102 0.742281 CGCCTCTCCAACAGGTGATG 60.742 60.000 0.00 0.00 43.30 3.07
6297 10103 0.326264 GCCTCTCCAACAGGTGATGT 59.674 55.000 0.00 0.00 46.97 3.06
6298 10104 1.555075 GCCTCTCCAACAGGTGATGTA 59.445 52.381 0.00 0.00 43.00 2.29
6299 10105 2.419297 GCCTCTCCAACAGGTGATGTAG 60.419 54.545 0.00 0.00 43.00 2.74
6300 10106 3.099905 CCTCTCCAACAGGTGATGTAGA 58.900 50.000 0.00 0.00 43.00 2.59
6301 10107 3.708631 CCTCTCCAACAGGTGATGTAGAT 59.291 47.826 0.00 0.00 43.00 1.98
6302 10108 4.442612 CCTCTCCAACAGGTGATGTAGATG 60.443 50.000 0.00 0.00 43.00 2.90
6303 10109 3.118629 TCTCCAACAGGTGATGTAGATGC 60.119 47.826 0.00 0.00 43.00 3.91
6304 10110 2.571202 TCCAACAGGTGATGTAGATGCA 59.429 45.455 0.00 0.00 43.00 3.96
6305 10111 3.008923 TCCAACAGGTGATGTAGATGCAA 59.991 43.478 0.00 0.00 43.00 4.08
6306 10112 3.949754 CCAACAGGTGATGTAGATGCAAT 59.050 43.478 0.00 0.00 43.00 3.56
6307 10113 4.400251 CCAACAGGTGATGTAGATGCAATT 59.600 41.667 0.00 0.00 43.00 2.32
6308 10114 5.105635 CCAACAGGTGATGTAGATGCAATTT 60.106 40.000 0.00 0.00 43.00 1.82
6309 10115 6.392354 CAACAGGTGATGTAGATGCAATTTT 58.608 36.000 0.00 0.00 43.00 1.82
6310 10116 6.594788 ACAGGTGATGTAGATGCAATTTTT 57.405 33.333 0.00 0.00 41.60 1.94
6335 10141 8.836268 TTTTTACATAAACTACATCTCACGGT 57.164 30.769 0.00 0.00 0.00 4.83
6336 10142 7.821595 TTTACATAAACTACATCTCACGGTG 57.178 36.000 0.56 0.56 0.00 4.94
6337 10143 4.181578 ACATAAACTACATCTCACGGTGC 58.818 43.478 2.51 0.00 0.00 5.01
6338 10144 2.831685 AAACTACATCTCACGGTGCA 57.168 45.000 2.51 0.00 0.00 4.57
6339 10145 2.831685 AACTACATCTCACGGTGCAA 57.168 45.000 2.51 0.00 0.00 4.08
6340 10146 2.831685 ACTACATCTCACGGTGCAAA 57.168 45.000 2.51 0.00 0.00 3.68
6341 10147 3.334583 ACTACATCTCACGGTGCAAAT 57.665 42.857 2.51 0.00 0.00 2.32
6342 10148 4.465632 ACTACATCTCACGGTGCAAATA 57.534 40.909 2.51 0.00 0.00 1.40
6343 10149 5.023533 ACTACATCTCACGGTGCAAATAT 57.976 39.130 2.51 0.00 0.00 1.28
6344 10150 6.156748 ACTACATCTCACGGTGCAAATATA 57.843 37.500 2.51 0.00 0.00 0.86
6345 10151 5.983720 ACTACATCTCACGGTGCAAATATAC 59.016 40.000 2.51 0.00 0.00 1.47
6346 10152 4.765273 ACATCTCACGGTGCAAATATACA 58.235 39.130 2.51 0.00 0.00 2.29
6347 10153 5.368145 ACATCTCACGGTGCAAATATACAT 58.632 37.500 2.51 0.00 0.00 2.29
6348 10154 5.466728 ACATCTCACGGTGCAAATATACATC 59.533 40.000 2.51 0.00 0.00 3.06
6349 10155 5.276461 TCTCACGGTGCAAATATACATCT 57.724 39.130 2.51 0.00 0.00 2.90
6350 10156 5.670485 TCTCACGGTGCAAATATACATCTT 58.330 37.500 2.51 0.00 0.00 2.40
6351 10157 5.753438 TCTCACGGTGCAAATATACATCTTC 59.247 40.000 2.51 0.00 0.00 2.87
6352 10158 5.423886 TCACGGTGCAAATATACATCTTCA 58.576 37.500 2.51 0.00 0.00 3.02
6353 10159 5.293324 TCACGGTGCAAATATACATCTTCAC 59.707 40.000 2.51 0.00 0.00 3.18
6354 10160 4.574828 ACGGTGCAAATATACATCTTCACC 59.425 41.667 0.00 0.00 39.32 4.02
6355 10161 4.024048 CGGTGCAAATATACATCTTCACCC 60.024 45.833 0.00 0.00 39.48 4.61
6356 10162 4.887071 GGTGCAAATATACATCTTCACCCA 59.113 41.667 0.00 0.00 37.38 4.51
6357 10163 5.536161 GGTGCAAATATACATCTTCACCCAT 59.464 40.000 0.00 0.00 37.38 4.00
6358 10164 6.040842 GGTGCAAATATACATCTTCACCCATT 59.959 38.462 0.00 0.00 37.38 3.16
6359 10165 6.919662 GTGCAAATATACATCTTCACCCATTG 59.080 38.462 0.00 0.00 0.00 2.82
6360 10166 6.040729 TGCAAATATACATCTTCACCCATTGG 59.959 38.462 0.00 0.00 37.80 3.16
6361 10167 6.265196 GCAAATATACATCTTCACCCATTGGA 59.735 38.462 3.62 0.00 34.81 3.53
6362 10168 7.522725 GCAAATATACATCTTCACCCATTGGAG 60.523 40.741 3.62 0.00 34.81 3.86
6363 10169 7.392766 AATATACATCTTCACCCATTGGAGA 57.607 36.000 3.62 0.00 44.64 3.71
6369 10175 5.512942 TCTTCACCCATTGGAGATGTAAA 57.487 39.130 3.62 0.00 34.53 2.01
6370 10176 5.886609 TCTTCACCCATTGGAGATGTAAAA 58.113 37.500 3.62 0.00 34.53 1.52
6371 10177 6.310941 TCTTCACCCATTGGAGATGTAAAAA 58.689 36.000 3.62 0.00 34.53 1.94
6372 10178 5.975693 TCACCCATTGGAGATGTAAAAAC 57.024 39.130 3.62 0.00 34.81 2.43
6373 10179 4.457603 TCACCCATTGGAGATGTAAAAACG 59.542 41.667 3.62 0.00 34.81 3.60
6374 10180 4.217550 CACCCATTGGAGATGTAAAAACGT 59.782 41.667 3.62 0.00 34.81 3.99
6375 10181 4.457949 ACCCATTGGAGATGTAAAAACGTC 59.542 41.667 3.62 0.00 34.81 4.34
6376 10182 4.457603 CCCATTGGAGATGTAAAAACGTCA 59.542 41.667 3.62 0.00 0.00 4.35
6377 10183 5.391950 CCCATTGGAGATGTAAAAACGTCAG 60.392 44.000 3.62 0.00 0.00 3.51
6378 10184 4.742438 TTGGAGATGTAAAAACGTCAGC 57.258 40.909 0.00 0.00 0.00 4.26
6379 10185 3.071479 TGGAGATGTAAAAACGTCAGCC 58.929 45.455 0.00 2.65 0.00 4.85
6380 10186 2.093783 GGAGATGTAAAAACGTCAGCCG 59.906 50.000 0.00 0.00 44.03 5.52
6381 10187 1.463444 AGATGTAAAAACGTCAGCCGC 59.537 47.619 0.00 0.00 41.42 6.53
6382 10188 0.165079 ATGTAAAAACGTCAGCCGCG 59.835 50.000 0.00 0.00 41.42 6.46
6383 10189 1.790896 GTAAAAACGTCAGCCGCGC 60.791 57.895 0.00 0.00 41.42 6.86
6384 10190 3.284433 TAAAAACGTCAGCCGCGCG 62.284 57.895 25.67 25.67 41.42 6.86
6398 10204 4.817063 CGCGCCAACTGCCAATCG 62.817 66.667 0.00 0.00 36.24 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.756413 CTTATTTGCTGCGCCCGCC 62.756 63.158 14.99 0.00 41.09 6.13
13 14 2.278142 CTTATTTGCTGCGCCCGC 60.278 61.111 4.18 8.60 42.35 6.13
14 15 2.278142 GCTTATTTGCTGCGCCCG 60.278 61.111 4.18 0.00 0.00 6.13
15 16 2.278142 CGCTTATTTGCTGCGCCC 60.278 61.111 4.18 0.00 43.08 6.13
19 20 2.951227 GCGCCGCTTATTTGCTGC 60.951 61.111 0.00 0.00 39.28 5.25
20 21 2.648724 CGCGCCGCTTATTTGCTG 60.649 61.111 7.78 0.00 0.00 4.41
31 32 4.147322 AAACTTCATCGCGCGCCG 62.147 61.111 27.95 20.60 38.61 6.46
32 33 2.276680 GAAACTTCATCGCGCGCC 60.277 61.111 27.95 8.11 0.00 6.53
33 34 2.641663 CGAAACTTCATCGCGCGC 60.642 61.111 27.95 23.91 33.07 6.86
34 35 2.020016 CCGAAACTTCATCGCGCG 59.980 61.111 26.76 26.76 38.93 6.86
35 36 1.058903 GACCGAAACTTCATCGCGC 59.941 57.895 0.00 0.00 38.93 6.86
36 37 1.708027 GGACCGAAACTTCATCGCG 59.292 57.895 0.00 0.00 38.93 5.87
37 38 1.708027 CGGACCGAAACTTCATCGC 59.292 57.895 8.64 0.00 38.93 4.58
38 39 1.708027 GCGGACCGAAACTTCATCG 59.292 57.895 20.50 0.00 39.92 3.84
39 40 1.708027 CGCGGACCGAAACTTCATC 59.292 57.895 20.50 0.00 40.02 2.92
40 41 2.388232 GCGCGGACCGAAACTTCAT 61.388 57.895 20.50 0.00 40.02 2.57
41 42 3.039588 GCGCGGACCGAAACTTCA 61.040 61.111 20.50 0.00 40.02 3.02
42 43 4.130281 CGCGCGGACCGAAACTTC 62.130 66.667 24.84 0.00 40.02 3.01
50 51 4.789075 TAGTTCAGCGCGCGGACC 62.789 66.667 32.94 26.50 0.00 4.46
51 52 2.938539 ATCTAGTTCAGCGCGCGGAC 62.939 60.000 32.94 26.48 0.00 4.79
52 53 1.441732 TATCTAGTTCAGCGCGCGGA 61.442 55.000 33.06 29.74 0.00 5.54
53 54 0.387367 ATATCTAGTTCAGCGCGCGG 60.387 55.000 33.06 26.50 0.00 6.46
54 55 0.705094 CATATCTAGTTCAGCGCGCG 59.295 55.000 28.44 28.44 0.00 6.86
55 56 0.436531 GCATATCTAGTTCAGCGCGC 59.563 55.000 26.66 26.66 0.00 6.86
56 57 1.063806 GGCATATCTAGTTCAGCGCG 58.936 55.000 0.00 0.00 0.00 6.86
57 58 1.433534 GGGCATATCTAGTTCAGCGC 58.566 55.000 0.00 0.00 0.00 5.92
58 59 1.670087 CGGGGCATATCTAGTTCAGCG 60.670 57.143 0.00 0.00 0.00 5.18
59 60 1.941668 GCGGGGCATATCTAGTTCAGC 60.942 57.143 0.00 0.00 0.00 4.26
60 61 1.670087 CGCGGGGCATATCTAGTTCAG 60.670 57.143 0.00 0.00 0.00 3.02
61 62 0.317160 CGCGGGGCATATCTAGTTCA 59.683 55.000 0.00 0.00 0.00 3.18
62 63 1.014564 GCGCGGGGCATATCTAGTTC 61.015 60.000 8.83 0.00 42.87 3.01
63 64 1.004918 GCGCGGGGCATATCTAGTT 60.005 57.895 8.83 0.00 42.87 2.24
64 65 2.657237 GCGCGGGGCATATCTAGT 59.343 61.111 8.83 0.00 42.87 2.57
65 66 2.507102 CGCGCGGGGCATATCTAG 60.507 66.667 24.84 0.00 43.84 2.43
66 67 4.735132 GCGCGCGGGGCATATCTA 62.735 66.667 33.06 0.00 43.84 1.98
98 99 4.451150 TAACAGCCGGCTCCAGCG 62.451 66.667 30.29 18.37 43.26 5.18
99 100 2.512515 CTAACAGCCGGCTCCAGC 60.513 66.667 30.29 0.00 41.14 4.85
100 101 1.142748 CTCTAACAGCCGGCTCCAG 59.857 63.158 30.29 22.89 0.00 3.86
101 102 0.687757 ATCTCTAACAGCCGGCTCCA 60.688 55.000 30.29 13.77 0.00 3.86
102 103 0.249657 CATCTCTAACAGCCGGCTCC 60.250 60.000 30.29 0.00 0.00 4.70
103 104 0.878086 GCATCTCTAACAGCCGGCTC 60.878 60.000 30.29 7.44 0.00 4.70
104 105 1.144936 GCATCTCTAACAGCCGGCT 59.855 57.895 27.08 27.08 0.00 5.52
105 106 0.878086 GAGCATCTCTAACAGCCGGC 60.878 60.000 21.89 21.89 0.00 6.13
106 107 3.280920 GAGCATCTCTAACAGCCGG 57.719 57.895 0.00 0.00 0.00 6.13
118 119 4.333926 GGTCAAGTCCAATGTAAGAGCATC 59.666 45.833 0.00 0.00 0.00 3.91
119 120 4.265073 GGTCAAGTCCAATGTAAGAGCAT 58.735 43.478 0.00 0.00 0.00 3.79
120 121 3.674997 GGTCAAGTCCAATGTAAGAGCA 58.325 45.455 0.00 0.00 0.00 4.26
121 122 2.673368 CGGTCAAGTCCAATGTAAGAGC 59.327 50.000 0.00 0.00 0.00 4.09
122 123 3.926616 ACGGTCAAGTCCAATGTAAGAG 58.073 45.455 0.00 0.00 0.00 2.85
123 124 5.471556 TTACGGTCAAGTCCAATGTAAGA 57.528 39.130 0.00 0.00 0.00 2.10
124 125 6.425721 TCTTTTACGGTCAAGTCCAATGTAAG 59.574 38.462 0.00 0.00 0.00 2.34
168 169 0.034059 CAGATACCGTGAGCATCCCC 59.966 60.000 0.00 0.00 0.00 4.81
169 170 0.034059 CCAGATACCGTGAGCATCCC 59.966 60.000 0.00 0.00 0.00 3.85
199 200 2.163390 CACAGCGATCTGACGGCTG 61.163 63.158 22.75 22.75 42.95 4.85
208 227 0.459585 TACGGCTTTCCACAGCGATC 60.460 55.000 0.00 0.00 41.12 3.69
250 269 1.607225 AATTAGCCACCATCCCTCCA 58.393 50.000 0.00 0.00 0.00 3.86
253 272 3.527665 ACAAGTAATTAGCCACCATCCCT 59.472 43.478 0.00 0.00 0.00 4.20
255 274 5.914898 AAACAAGTAATTAGCCACCATCC 57.085 39.130 0.00 0.00 0.00 3.51
256 275 6.687604 ACAAAACAAGTAATTAGCCACCATC 58.312 36.000 0.00 0.00 0.00 3.51
257 276 6.664428 ACAAAACAAGTAATTAGCCACCAT 57.336 33.333 0.00 0.00 0.00 3.55
259 278 9.783256 CTATTACAAAACAAGTAATTAGCCACC 57.217 33.333 4.18 0.00 41.17 4.61
273 2812 8.786826 AATCAGGATCGAACTATTACAAAACA 57.213 30.769 0.00 0.00 0.00 2.83
274 2813 8.336080 GGAATCAGGATCGAACTATTACAAAAC 58.664 37.037 0.00 0.00 0.00 2.43
515 3062 1.827399 AAAGCCGGGAGAAGCGAGAA 61.827 55.000 2.18 0.00 0.00 2.87
556 3103 0.897863 CCCCGATCCAAACCAGCAAA 60.898 55.000 0.00 0.00 0.00 3.68
633 3180 4.619227 CCGAACCAGCACCCACGT 62.619 66.667 0.00 0.00 0.00 4.49
767 3317 4.537433 CTAGCTCCCCTGCACCGC 62.537 72.222 0.00 0.00 34.99 5.68
768 3318 4.537433 GCTAGCTCCCCTGCACCG 62.537 72.222 7.70 0.00 34.99 4.94
769 3319 2.750657 ATGCTAGCTCCCCTGCACC 61.751 63.158 17.23 0.00 38.29 5.01
770 3320 1.525535 CATGCTAGCTCCCCTGCAC 60.526 63.158 17.23 0.00 38.29 4.57
771 3321 1.997311 ACATGCTAGCTCCCCTGCA 60.997 57.895 17.23 0.00 39.83 4.41
793 3343 8.443953 AATAAAGATTCATCTCAGCACTAACC 57.556 34.615 0.00 0.00 35.76 2.85
873 3423 4.388577 TCCTAGCTATCATAGGCAGTGA 57.611 45.455 0.00 0.00 39.81 3.41
883 3433 9.326489 ACTAATATTTCCACATCCTAGCTATCA 57.674 33.333 0.00 0.00 0.00 2.15
885 3435 9.326489 TCACTAATATTTCCACATCCTAGCTAT 57.674 33.333 0.00 0.00 0.00 2.97
903 3453 8.998814 TCCTGATTCCCTTAAACATCACTAATA 58.001 33.333 0.00 0.00 0.00 0.98
944 3494 8.971321 CAACAATTGTTAGACAAGAAATTCAGG 58.029 33.333 22.87 1.64 41.94 3.86
973 3523 2.567615 ACTCTTCCGGTAACTGCAGAAT 59.432 45.455 23.35 11.42 0.00 2.40
977 3527 1.270625 CCAACTCTTCCGGTAACTGCA 60.271 52.381 0.00 0.00 0.00 4.41
978 3528 1.439679 CCAACTCTTCCGGTAACTGC 58.560 55.000 0.00 0.00 0.00 4.40
979 3529 1.621814 TCCCAACTCTTCCGGTAACTG 59.378 52.381 0.00 0.00 0.00 3.16
984 3534 0.328258 CCATTCCCAACTCTTCCGGT 59.672 55.000 0.00 0.00 0.00 5.28
1011 3561 2.868920 GTCGAGTTCTCCGTCGCT 59.131 61.111 0.00 0.00 36.11 4.93
1077 3627 2.818274 GGCACCGTCGAACCATCC 60.818 66.667 0.00 0.00 0.00 3.51
1183 3733 2.573869 CTCGACATGCTGGTCCGT 59.426 61.111 0.00 0.00 34.24 4.69
1555 4105 4.605183 AGCTAGATCTACAGAACCACAGT 58.395 43.478 0.00 0.00 0.00 3.55
1872 4422 0.515564 GGACGGGAAAATGTGTGTCG 59.484 55.000 0.00 0.00 0.00 4.35
2085 4635 6.135454 ACAGTATTGATATGGCATGGGAAAA 58.865 36.000 10.98 0.00 0.00 2.29
2115 4665 7.442062 AGCGATCACAATGAATATACAACATCA 59.558 33.333 0.00 0.00 0.00 3.07
2155 4705 7.558161 TCTATTCAAGCATATCACCAACTTG 57.442 36.000 0.00 0.00 39.22 3.16
2156 4706 7.067494 GGTTCTATTCAAGCATATCACCAACTT 59.933 37.037 0.00 0.00 0.00 2.66
2503 5053 3.653344 TCGAGTGTGAGAACATGAAAGG 58.347 45.455 0.00 0.00 0.00 3.11
2504 5054 5.061933 CAGATCGAGTGTGAGAACATGAAAG 59.938 44.000 0.00 0.00 0.00 2.62
2777 5333 4.361783 TGACAACTCCTTCATCATCCCTA 58.638 43.478 0.00 0.00 0.00 3.53
2778 5334 3.184628 TGACAACTCCTTCATCATCCCT 58.815 45.455 0.00 0.00 0.00 4.20
3098 5655 9.841880 GTTTGGTTCACCTAGAAGAATAAAATC 57.158 33.333 0.00 0.00 36.78 2.17
3099 5656 9.588096 AGTTTGGTTCACCTAGAAGAATAAAAT 57.412 29.630 0.00 0.00 36.78 1.82
3310 5869 7.687445 AGAAACAATGTGAAACTTTTTGATGC 58.313 30.769 0.00 0.00 38.04 3.91
3377 5936 9.232473 GATGGAAATCAGTTTAGAAGGTAAGTT 57.768 33.333 0.00 0.00 0.00 2.66
3740 6299 2.653726 ACATGAATTGCGCCTGGATTA 58.346 42.857 4.18 0.00 0.00 1.75
3780 6339 5.301551 ACTGCAATGACATAAAAGTGTCCAA 59.698 36.000 4.75 0.00 46.17 3.53
3959 7753 7.014615 CCATCTAATGCTGCCCTTATTTTAACT 59.985 37.037 0.00 0.00 0.00 2.24
4013 7807 5.351740 GGGAGTACAATTGAACTCTAGCAAC 59.648 44.000 13.59 0.00 41.53 4.17
4031 7825 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4032 7826 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
4033 7827 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4034 7828 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
4035 7829 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4036 7830 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4037 7831 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4038 7832 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4039 7833 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4040 7834 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
4041 7835 1.392510 GTGCGACAAGTAATTCCGGAC 59.607 52.381 1.83 0.00 34.80 4.79
4042 7836 1.001068 TGTGCGACAAGTAATTCCGGA 59.999 47.619 0.00 0.00 0.00 5.14
4043 7837 1.434555 TGTGCGACAAGTAATTCCGG 58.565 50.000 0.00 0.00 0.00 5.14
4044 7838 3.529634 TTTGTGCGACAAGTAATTCCG 57.470 42.857 0.00 0.00 39.53 4.30
4045 7839 4.083003 TCCATTTGTGCGACAAGTAATTCC 60.083 41.667 0.00 0.00 39.53 3.01
4046 7840 5.041951 TCCATTTGTGCGACAAGTAATTC 57.958 39.130 0.00 0.00 39.53 2.17
4047 7841 5.643379 ATCCATTTGTGCGACAAGTAATT 57.357 34.783 0.00 0.00 39.53 1.40
4048 7842 6.751514 TTATCCATTTGTGCGACAAGTAAT 57.248 33.333 0.00 0.00 39.53 1.89
4049 7843 6.561737 TTTATCCATTTGTGCGACAAGTAA 57.438 33.333 0.00 0.00 39.53 2.24
4050 7844 6.561737 TTTTATCCATTTGTGCGACAAGTA 57.438 33.333 0.00 0.00 39.53 2.24
4051 7845 5.446143 TTTTATCCATTTGTGCGACAAGT 57.554 34.783 0.00 0.00 39.53 3.16
4052 7846 6.237279 CGATTTTTATCCATTTGTGCGACAAG 60.237 38.462 0.00 0.00 39.53 3.16
4053 7847 5.570973 CGATTTTTATCCATTTGTGCGACAA 59.429 36.000 0.00 0.00 36.11 3.18
4054 7848 5.092105 CGATTTTTATCCATTTGTGCGACA 58.908 37.500 0.00 0.00 0.00 4.35
4055 7849 5.328691 TCGATTTTTATCCATTTGTGCGAC 58.671 37.500 0.00 0.00 0.00 5.19
4056 7850 5.553290 TCGATTTTTATCCATTTGTGCGA 57.447 34.783 0.00 0.00 0.00 5.10
4057 7851 5.743398 ACATCGATTTTTATCCATTTGTGCG 59.257 36.000 0.00 0.00 0.00 5.34
4058 7852 8.801715 ATACATCGATTTTTATCCATTTGTGC 57.198 30.769 0.00 0.00 0.00 4.57
4064 7858 9.877178 GTCCTAGATACATCGATTTTTATCCAT 57.123 33.333 0.00 0.00 0.00 3.41
4065 7859 9.090103 AGTCCTAGATACATCGATTTTTATCCA 57.910 33.333 0.00 0.00 0.00 3.41
4095 7889 8.690884 CGGAGAAATGGATGTATCTAGACATAT 58.309 37.037 0.00 0.00 40.18 1.78
4096 7890 7.888546 TCGGAGAAATGGATGTATCTAGACATA 59.111 37.037 0.00 0.00 40.18 2.29
4097 7891 6.721668 TCGGAGAAATGGATGTATCTAGACAT 59.278 38.462 0.00 0.00 42.82 3.06
4098 7892 6.016192 GTCGGAGAAATGGATGTATCTAGACA 60.016 42.308 0.00 0.00 39.69 3.41
4099 7893 6.016192 TGTCGGAGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 39.69 2.59
4100 7894 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
4101 7895 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
4102 7896 6.323996 ACTTGTCGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 39.69 1.98
4103 7897 5.129485 ACTTGTCGGAGAAATGGATGTATCT 59.871 40.000 0.00 0.00 39.69 1.98
4104 7898 5.360591 ACTTGTCGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 39.69 2.24
4105 7899 5.359194 ACTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
4106 7900 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
4107 7901 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
4108 7902 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
4109 7903 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
4110 7904 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
4111 7905 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
4112 7906 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
4113 7907 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
4114 7908 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
4115 7909 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
4116 7910 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
4117 7911 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
4118 7912 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
4119 7913 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
4120 7914 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4121 7915 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4122 7916 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4123 7917 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4124 7918 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4125 7919 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4126 7920 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4127 7921 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4128 7922 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4129 7923 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4130 7924 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
4131 7925 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
4132 7926 1.041447 AACATACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
4133 7927 0.822164 AAACATACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
4134 7928 3.345508 AAAAACATACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
4226 8020 0.767375 AGCCAAAGAACTGCCAGAGA 59.233 50.000 0.00 0.00 0.00 3.10
4306 8100 3.626930 ACAACAACAAAGCCCTTAGTCA 58.373 40.909 0.00 0.00 0.00 3.41
4443 8240 4.968719 TCCACTTCTAAGGCTCCATTATGA 59.031 41.667 0.00 0.00 0.00 2.15
4588 8385 2.233676 TCAAGAGAGCTGCGGAAATGTA 59.766 45.455 0.00 0.00 0.00 2.29
4748 8545 0.248990 AGCAACACCAATGCAACACG 60.249 50.000 0.00 0.00 46.22 4.49
5185 8982 1.153524 TGTTCCATTGGGCACTGCT 59.846 52.632 2.09 0.00 30.89 4.24
5368 9165 5.620206 TGTGAATCTGGAGCTTTTTCACTA 58.380 37.500 19.56 10.17 44.00 2.74
5412 9209 1.003696 GCACTAGGTCTTCTGGCCTTT 59.996 52.381 3.32 0.00 36.38 3.11
5493 9290 2.582172 TGGGTGTGATTCATGGGAGAAT 59.418 45.455 0.00 0.00 40.75 2.40
5559 9356 1.215382 CCATCTTCGACGGCTCACA 59.785 57.895 0.00 0.00 0.00 3.58
5675 9472 5.070446 AGTGAAGTGAAGAAGTCCACATACA 59.930 40.000 0.00 0.00 35.84 2.29
5851 9655 3.146618 ACACTAGAAGGTCAATACGCG 57.853 47.619 3.53 3.53 0.00 6.01
6031 9835 0.037326 ATGGCACGACGACACAATCT 60.037 50.000 0.00 0.00 0.00 2.40
6040 9844 1.709760 GTGTCATCATGGCACGACG 59.290 57.895 6.63 0.00 43.49 5.12
6046 9850 0.737219 GCCTCTTGTGTCATCATGGC 59.263 55.000 0.00 0.00 0.00 4.40
6063 9867 7.440523 TTGAAAATAGACAGAGAAAAGAGCC 57.559 36.000 0.00 0.00 0.00 4.70
6070 9874 8.690203 TGAACCAATTGAAAATAGACAGAGAA 57.310 30.769 7.12 0.00 0.00 2.87
6071 9875 8.868522 ATGAACCAATTGAAAATAGACAGAGA 57.131 30.769 7.12 0.00 0.00 3.10
6074 9878 9.241317 GCATATGAACCAATTGAAAATAGACAG 57.759 33.333 7.12 0.00 0.00 3.51
6078 9882 7.654520 CCCAGCATATGAACCAATTGAAAATAG 59.345 37.037 7.12 0.00 0.00 1.73
6080 9884 6.070078 ACCCAGCATATGAACCAATTGAAAAT 60.070 34.615 7.12 0.00 0.00 1.82
6081 9885 5.248020 ACCCAGCATATGAACCAATTGAAAA 59.752 36.000 7.12 0.00 0.00 2.29
6082 9886 4.776837 ACCCAGCATATGAACCAATTGAAA 59.223 37.500 7.12 0.00 0.00 2.69
6085 9889 3.448301 ACACCCAGCATATGAACCAATTG 59.552 43.478 6.97 0.00 0.00 2.32
6131 9937 6.569610 GCCATTCAACCTTCGAAATTAAGACA 60.570 38.462 0.00 0.00 0.00 3.41
6169 9975 1.482955 CAGTGACTGAAACGCGTCG 59.517 57.895 14.44 4.06 32.44 5.12
6172 9978 1.148310 AATCCAGTGACTGAAACGCG 58.852 50.000 15.33 3.53 32.44 6.01
6203 10009 7.261325 TCTATTTGATATGCTCTTAGGATCGC 58.739 38.462 0.00 0.00 0.00 4.58
6208 10014 9.941325 ACATCTTCTATTTGATATGCTCTTAGG 57.059 33.333 0.00 0.00 0.00 2.69
6214 10020 9.381033 GCATCTACATCTTCTATTTGATATGCT 57.619 33.333 0.00 0.00 32.76 3.79
6215 10021 9.159364 TGCATCTACATCTTCTATTTGATATGC 57.841 33.333 0.00 0.00 35.30 3.14
6226 10032 9.905713 TTAGGTATTTTTGCATCTACATCTTCT 57.094 29.630 0.00 0.00 0.00 2.85
6243 10049 8.899771 CCTCGGACATGTAAAAATTAGGTATTT 58.100 33.333 0.00 0.00 38.08 1.40
6244 10050 7.012989 GCCTCGGACATGTAAAAATTAGGTATT 59.987 37.037 0.00 0.00 0.00 1.89
6245 10051 6.485648 GCCTCGGACATGTAAAAATTAGGTAT 59.514 38.462 0.00 0.00 0.00 2.73
6246 10052 5.818857 GCCTCGGACATGTAAAAATTAGGTA 59.181 40.000 0.00 0.00 0.00 3.08
6247 10053 4.638865 GCCTCGGACATGTAAAAATTAGGT 59.361 41.667 0.00 0.00 0.00 3.08
6248 10054 4.036380 GGCCTCGGACATGTAAAAATTAGG 59.964 45.833 0.00 0.54 0.00 2.69
6249 10055 4.638421 TGGCCTCGGACATGTAAAAATTAG 59.362 41.667 3.32 0.00 0.00 1.73
6250 10056 4.590918 TGGCCTCGGACATGTAAAAATTA 58.409 39.130 3.32 0.00 0.00 1.40
6251 10057 3.426615 TGGCCTCGGACATGTAAAAATT 58.573 40.909 3.32 0.00 0.00 1.82
6252 10058 3.080300 TGGCCTCGGACATGTAAAAAT 57.920 42.857 3.32 0.00 0.00 1.82
6253 10059 2.570415 TGGCCTCGGACATGTAAAAA 57.430 45.000 3.32 0.00 0.00 1.94
6254 10060 2.570415 TTGGCCTCGGACATGTAAAA 57.430 45.000 3.32 0.00 30.63 1.52
6255 10061 2.570415 TTTGGCCTCGGACATGTAAA 57.430 45.000 3.32 0.00 30.63 2.01
6256 10062 2.554893 GTTTTTGGCCTCGGACATGTAA 59.445 45.455 3.32 0.00 30.63 2.41
6257 10063 2.156098 GTTTTTGGCCTCGGACATGTA 58.844 47.619 3.32 0.00 30.63 2.29
6258 10064 0.958822 GTTTTTGGCCTCGGACATGT 59.041 50.000 3.32 0.00 30.63 3.21
6259 10065 0.109781 CGTTTTTGGCCTCGGACATG 60.110 55.000 3.32 0.00 30.63 3.21
6260 10066 1.862602 GCGTTTTTGGCCTCGGACAT 61.863 55.000 3.32 0.00 30.63 3.06
6261 10067 2.548295 GCGTTTTTGGCCTCGGACA 61.548 57.895 3.32 0.00 0.00 4.02
6262 10068 2.254350 GCGTTTTTGGCCTCGGAC 59.746 61.111 3.32 0.00 0.00 4.79
6269 10075 0.318699 GTTGGAGAGGCGTTTTTGGC 60.319 55.000 0.00 0.00 0.00 4.52
6270 10076 1.001378 CTGTTGGAGAGGCGTTTTTGG 60.001 52.381 0.00 0.00 0.00 3.28
6271 10077 1.001378 CCTGTTGGAGAGGCGTTTTTG 60.001 52.381 0.00 0.00 34.57 2.44
6272 10078 1.318576 CCTGTTGGAGAGGCGTTTTT 58.681 50.000 0.00 0.00 34.57 1.94
6273 10079 0.182775 ACCTGTTGGAGAGGCGTTTT 59.817 50.000 0.00 0.00 37.04 2.43
6274 10080 0.535102 CACCTGTTGGAGAGGCGTTT 60.535 55.000 0.00 0.00 37.04 3.60
6275 10081 1.071471 CACCTGTTGGAGAGGCGTT 59.929 57.895 0.00 0.00 37.04 4.84
6276 10082 1.194781 ATCACCTGTTGGAGAGGCGT 61.195 55.000 0.00 0.00 36.43 5.68
6277 10083 0.742281 CATCACCTGTTGGAGAGGCG 60.742 60.000 0.00 0.00 36.43 5.52
6278 10084 0.326264 ACATCACCTGTTGGAGAGGC 59.674 55.000 0.00 0.00 38.07 4.70
6279 10085 3.099905 TCTACATCACCTGTTGGAGAGG 58.900 50.000 0.00 0.00 39.88 3.69
6280 10086 4.691175 CATCTACATCACCTGTTGGAGAG 58.309 47.826 4.89 0.00 37.92 3.20
6281 10087 3.118629 GCATCTACATCACCTGTTGGAGA 60.119 47.826 1.53 1.53 38.62 3.71
6282 10088 3.201290 GCATCTACATCACCTGTTGGAG 58.799 50.000 0.00 0.00 39.39 3.86
6283 10089 2.571202 TGCATCTACATCACCTGTTGGA 59.429 45.455 0.00 0.00 39.39 3.53
6284 10090 2.989909 TGCATCTACATCACCTGTTGG 58.010 47.619 0.00 0.00 39.39 3.77
6285 10091 5.571784 AATTGCATCTACATCACCTGTTG 57.428 39.130 0.00 0.00 39.39 3.33
6286 10092 6.594788 AAAATTGCATCTACATCACCTGTT 57.405 33.333 0.00 0.00 39.39 3.16
6287 10093 6.594788 AAAAATTGCATCTACATCACCTGT 57.405 33.333 0.00 0.00 42.13 4.00
6310 10116 8.714179 CACCGTGAGATGTAGTTTATGTAAAAA 58.286 33.333 0.00 0.00 0.00 1.94
6311 10117 7.148540 GCACCGTGAGATGTAGTTTATGTAAAA 60.149 37.037 1.65 0.00 0.00 1.52
6312 10118 6.311935 GCACCGTGAGATGTAGTTTATGTAAA 59.688 38.462 1.65 0.00 0.00 2.01
6313 10119 5.808540 GCACCGTGAGATGTAGTTTATGTAA 59.191 40.000 1.65 0.00 0.00 2.41
6314 10120 5.105675 TGCACCGTGAGATGTAGTTTATGTA 60.106 40.000 1.65 0.00 0.00 2.29
6315 10121 4.181578 GCACCGTGAGATGTAGTTTATGT 58.818 43.478 1.65 0.00 0.00 2.29
6316 10122 4.180817 TGCACCGTGAGATGTAGTTTATG 58.819 43.478 1.65 0.00 0.00 1.90
6317 10123 4.465632 TGCACCGTGAGATGTAGTTTAT 57.534 40.909 1.65 0.00 0.00 1.40
6318 10124 3.945981 TGCACCGTGAGATGTAGTTTA 57.054 42.857 1.65 0.00 0.00 2.01
6319 10125 2.831685 TGCACCGTGAGATGTAGTTT 57.168 45.000 1.65 0.00 0.00 2.66
6320 10126 2.831685 TTGCACCGTGAGATGTAGTT 57.168 45.000 1.65 0.00 0.00 2.24
6321 10127 2.831685 TTTGCACCGTGAGATGTAGT 57.168 45.000 1.65 0.00 0.00 2.73
6322 10128 5.983118 TGTATATTTGCACCGTGAGATGTAG 59.017 40.000 1.65 0.00 0.00 2.74
6323 10129 5.908341 TGTATATTTGCACCGTGAGATGTA 58.092 37.500 1.65 0.00 0.00 2.29
6324 10130 4.765273 TGTATATTTGCACCGTGAGATGT 58.235 39.130 1.65 0.00 0.00 3.06
6325 10131 5.698089 AGATGTATATTTGCACCGTGAGATG 59.302 40.000 1.65 0.00 0.00 2.90
6326 10132 5.858381 AGATGTATATTTGCACCGTGAGAT 58.142 37.500 1.65 0.00 0.00 2.75
6327 10133 5.276461 AGATGTATATTTGCACCGTGAGA 57.724 39.130 1.65 0.00 0.00 3.27
6328 10134 5.523552 TGAAGATGTATATTTGCACCGTGAG 59.476 40.000 1.65 0.00 0.00 3.51
6329 10135 5.293324 GTGAAGATGTATATTTGCACCGTGA 59.707 40.000 1.65 0.00 0.00 4.35
6330 10136 5.501715 GTGAAGATGTATATTTGCACCGTG 58.498 41.667 0.00 0.00 0.00 4.94
6331 10137 4.574828 GGTGAAGATGTATATTTGCACCGT 59.425 41.667 4.60 0.00 35.72 4.83
6332 10138 4.024048 GGGTGAAGATGTATATTTGCACCG 60.024 45.833 12.43 0.00 44.04 4.94
6333 10139 4.887071 TGGGTGAAGATGTATATTTGCACC 59.113 41.667 10.79 10.79 42.78 5.01
6334 10140 6.639632 ATGGGTGAAGATGTATATTTGCAC 57.360 37.500 0.00 0.00 0.00 4.57
6335 10141 6.040729 CCAATGGGTGAAGATGTATATTTGCA 59.959 38.462 0.00 0.00 0.00 4.08
6336 10142 6.265196 TCCAATGGGTGAAGATGTATATTTGC 59.735 38.462 0.00 0.00 34.93 3.68
6337 10143 7.720957 TCTCCAATGGGTGAAGATGTATATTTG 59.279 37.037 0.00 0.00 33.89 2.32
6338 10144 7.815383 TCTCCAATGGGTGAAGATGTATATTT 58.185 34.615 0.00 0.00 33.89 1.40
6339 10145 7.392766 TCTCCAATGGGTGAAGATGTATATT 57.607 36.000 0.00 0.00 33.89 1.28
6340 10146 7.017950 ACATCTCCAATGGGTGAAGATGTATAT 59.982 37.037 24.26 7.71 46.44 0.86
6341 10147 6.329986 ACATCTCCAATGGGTGAAGATGTATA 59.670 38.462 24.26 0.00 46.44 1.47
6342 10148 5.133322 ACATCTCCAATGGGTGAAGATGTAT 59.867 40.000 24.26 8.54 46.44 2.29
6343 10149 4.474651 ACATCTCCAATGGGTGAAGATGTA 59.525 41.667 24.26 0.00 46.44 2.29
6344 10150 3.267812 ACATCTCCAATGGGTGAAGATGT 59.732 43.478 21.58 21.58 44.90 3.06
6345 10151 3.894759 ACATCTCCAATGGGTGAAGATG 58.105 45.455 20.57 20.57 43.59 2.90
6346 10152 5.715439 TTACATCTCCAATGGGTGAAGAT 57.285 39.130 0.00 0.00 39.92 2.40
6347 10153 5.512942 TTTACATCTCCAATGGGTGAAGA 57.487 39.130 0.00 0.00 39.92 2.87
6348 10154 6.389906 GTTTTTACATCTCCAATGGGTGAAG 58.610 40.000 0.00 0.00 39.92 3.02
6349 10155 5.048364 CGTTTTTACATCTCCAATGGGTGAA 60.048 40.000 0.00 0.00 39.92 3.18
6350 10156 4.457603 CGTTTTTACATCTCCAATGGGTGA 59.542 41.667 0.00 0.00 40.71 4.02
6351 10157 4.217550 ACGTTTTTACATCTCCAATGGGTG 59.782 41.667 0.00 0.00 34.93 4.61
6352 10158 4.403734 ACGTTTTTACATCTCCAATGGGT 58.596 39.130 0.00 0.00 34.93 4.51
6353 10159 4.457603 TGACGTTTTTACATCTCCAATGGG 59.542 41.667 0.00 0.00 0.00 4.00
6354 10160 5.621197 TGACGTTTTTACATCTCCAATGG 57.379 39.130 0.00 0.00 0.00 3.16
6355 10161 5.088739 GCTGACGTTTTTACATCTCCAATG 58.911 41.667 0.00 0.00 0.00 2.82
6356 10162 4.156008 GGCTGACGTTTTTACATCTCCAAT 59.844 41.667 0.00 0.00 0.00 3.16
6357 10163 3.500680 GGCTGACGTTTTTACATCTCCAA 59.499 43.478 0.00 0.00 0.00 3.53
6358 10164 3.071479 GGCTGACGTTTTTACATCTCCA 58.929 45.455 0.00 0.00 0.00 3.86
6359 10165 2.093783 CGGCTGACGTTTTTACATCTCC 59.906 50.000 0.00 0.00 37.93 3.71
6360 10166 2.474032 GCGGCTGACGTTTTTACATCTC 60.474 50.000 4.21 0.00 46.52 2.75
6361 10167 1.463444 GCGGCTGACGTTTTTACATCT 59.537 47.619 4.21 0.00 46.52 2.90
6362 10168 1.785518 CGCGGCTGACGTTTTTACATC 60.786 52.381 4.21 0.00 46.52 3.06
6363 10169 0.165079 CGCGGCTGACGTTTTTACAT 59.835 50.000 4.21 0.00 46.52 2.29
6364 10170 1.565591 CGCGGCTGACGTTTTTACA 59.434 52.632 4.21 0.00 46.52 2.41
6365 10171 1.790896 GCGCGGCTGACGTTTTTAC 60.791 57.895 8.83 0.00 46.52 2.01
6366 10172 2.552268 GCGCGGCTGACGTTTTTA 59.448 55.556 8.83 0.00 46.52 1.52
6367 10173 4.659874 CGCGCGGCTGACGTTTTT 62.660 61.111 24.84 0.00 46.52 1.94
6381 10187 4.817063 CGATTGGCAGTTGGCGCG 62.817 66.667 0.00 0.00 46.16 6.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.