Multiple sequence alignment - TraesCS7D01G221500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G221500 chr7D 100.000 7656 0 0 1 7656 182353550 182345895 0.000000e+00 14139
1 TraesCS7D01G221500 chr7D 88.391 758 69 10 96 845 535832938 535833684 0.000000e+00 894
2 TraesCS7D01G221500 chr7D 91.228 171 15 0 3408 3578 454079411 454079241 4.620000e-57 233
3 TraesCS7D01G221500 chr7B 97.930 5121 67 15 781 5875 150841509 150836402 0.000000e+00 8833
4 TraesCS7D01G221500 chr7B 96.400 889 22 10 6133 7019 150836403 150835523 0.000000e+00 1456
5 TraesCS7D01G221500 chr7B 90.186 754 72 2 96 848 238001275 238000523 0.000000e+00 981
6 TraesCS7D01G221500 chr7B 89.206 491 18 11 7141 7603 150823741 150823258 1.430000e-161 580
7 TraesCS7D01G221500 chr7A 90.429 1609 95 19 1805 3387 189297013 189298588 0.000000e+00 2063
8 TraesCS7D01G221500 chr7A 90.947 1436 72 27 6133 7558 189301429 189302816 0.000000e+00 1879
9 TraesCS7D01G221500 chr7A 91.567 1091 63 17 3571 4642 189298620 189299700 0.000000e+00 1478
10 TraesCS7D01G221500 chr7A 89.312 945 61 19 849 1763 189295913 189296847 0.000000e+00 1149
11 TraesCS7D01G221500 chr7A 90.882 669 49 10 4690 5350 189299933 189300597 0.000000e+00 887
12 TraesCS7D01G221500 chr7A 91.992 512 36 4 5363 5872 189300919 189301427 0.000000e+00 713
13 TraesCS7D01G221500 chr7A 92.771 166 12 0 3409 3574 624927580 624927745 2.760000e-59 241
14 TraesCS7D01G221500 chr1D 91.910 754 56 4 96 848 338633707 338632958 0.000000e+00 1050
15 TraesCS7D01G221500 chr1D 95.098 102 4 1 1 102 319162465 319162365 7.950000e-35 159
16 TraesCS7D01G221500 chr1D 88.095 126 13 2 1 126 24587895 24588018 1.720000e-31 148
17 TraesCS7D01G221500 chr2D 90.969 753 62 6 96 845 487337043 487337792 0.000000e+00 1009
18 TraesCS7D01G221500 chr2D 98.868 265 3 0 5874 6138 134786526 134786262 2.500000e-129 473
19 TraesCS7D01G221500 chr2D 97.753 267 4 2 5870 6136 471067571 471067307 7.000000e-125 459
20 TraesCS7D01G221500 chr2D 92.486 173 13 0 3403 3575 134301480 134301652 1.650000e-61 248
21 TraesCS7D01G221500 chr2D 92.638 163 11 1 3411 3573 296364049 296364210 4.620000e-57 233
22 TraesCS7D01G221500 chr2D 87.059 170 17 2 3108 3272 337850215 337850046 3.650000e-43 187
23 TraesCS7D01G221500 chr2D 97.895 95 2 0 1 95 320944042 320943948 1.710000e-36 165
24 TraesCS7D01G221500 chr2D 90.598 117 10 1 1 116 454635608 454635492 3.700000e-33 154
25 TraesCS7D01G221500 chr3B 90.133 750 71 3 96 843 478550829 478551577 0.000000e+00 972
26 TraesCS7D01G221500 chr4A 91.076 706 50 8 96 793 418072852 418073552 0.000000e+00 942
27 TraesCS7D01G221500 chr4A 89.831 118 11 1 1 117 293129959 293129842 4.790000e-32 150
28 TraesCS7D01G221500 chr5B 89.139 755 75 5 96 848 565796133 565795384 0.000000e+00 933
29 TraesCS7D01G221500 chr5B 89.655 174 13 2 3105 3273 479726825 479726998 4.650000e-52 217
30 TraesCS7D01G221500 chr5A 89.036 757 70 9 96 844 364974464 364975215 0.000000e+00 926
31 TraesCS7D01G221500 chr5A 92.169 166 13 0 3408 3573 320214408 320214243 1.280000e-57 235
32 TraesCS7D01G221500 chr2A 90.046 653 64 1 192 843 769258387 769257735 0.000000e+00 845
33 TraesCS7D01G221500 chr2A 92.638 163 11 1 3411 3573 367649161 367649322 4.620000e-57 233
34 TraesCS7D01G221500 chr6B 96.429 280 10 0 5864 6143 262375817 262375538 5.410000e-126 462
35 TraesCS7D01G221500 chr2B 98.473 262 4 0 5873 6134 72134408 72134669 5.410000e-126 462
36 TraesCS7D01G221500 chr2B 92.169 166 12 1 3411 3576 366017679 366017515 4.620000e-57 233
37 TraesCS7D01G221500 chr1B 98.113 265 5 0 5873 6137 295615107 295614843 5.410000e-126 462
38 TraesCS7D01G221500 chr4B 97.736 265 6 0 5873 6137 43088981 43088717 2.520000e-124 457
39 TraesCS7D01G221500 chr5D 97.727 264 6 0 5871 6134 35411780 35411517 9.060000e-124 455
40 TraesCS7D01G221500 chr5D 90.230 174 12 2 3105 3273 399614512 399614685 1.000000e-53 222
41 TraesCS7D01G221500 chr5D 94.393 107 5 1 1 106 218394917 218394811 6.150000e-36 163
42 TraesCS7D01G221500 chr5D 92.661 109 7 1 1 109 187344196 187344089 1.030000e-33 156
43 TraesCS7D01G221500 chr3D 97.736 265 4 2 5871 6134 111257045 111256782 9.060000e-124 455
44 TraesCS7D01G221500 chr3D 90.395 177 16 1 3398 3573 87926175 87925999 1.660000e-56 231
45 TraesCS7D01G221500 chr3D 87.805 164 13 3 3115 3273 540569091 540569252 1.310000e-42 185
46 TraesCS7D01G221500 chr3A 97.727 264 6 0 5873 6136 600926564 600926827 9.060000e-124 455
47 TraesCS7D01G221500 chr3A 88.415 164 11 4 3115 3273 675873180 675873020 2.820000e-44 191
48 TraesCS7D01G221500 chr6A 91.724 145 8 3 3130 3273 47466809 47466950 1.690000e-46 198
49 TraesCS7D01G221500 chr4D 86.826 167 17 2 3111 3272 32019448 32019614 1.700000e-41 182
50 TraesCS7D01G221500 chr6D 95.960 99 4 0 1 99 276708053 276707955 2.210000e-35 161
51 TraesCS7D01G221500 chrUn 92.661 109 7 1 1 109 106205642 106205535 1.030000e-33 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G221500 chr7D 182345895 182353550 7655 True 14139.0 14139 100.000000 1 7656 1 chr7D.!!$R1 7655
1 TraesCS7D01G221500 chr7D 535832938 535833684 746 False 894.0 894 88.391000 96 845 1 chr7D.!!$F1 749
2 TraesCS7D01G221500 chr7B 150835523 150841509 5986 True 5144.5 8833 97.165000 781 7019 2 chr7B.!!$R3 6238
3 TraesCS7D01G221500 chr7B 238000523 238001275 752 True 981.0 981 90.186000 96 848 1 chr7B.!!$R2 752
4 TraesCS7D01G221500 chr7A 189295913 189302816 6903 False 1361.5 2063 90.854833 849 7558 6 chr7A.!!$F2 6709
5 TraesCS7D01G221500 chr1D 338632958 338633707 749 True 1050.0 1050 91.910000 96 848 1 chr1D.!!$R2 752
6 TraesCS7D01G221500 chr2D 487337043 487337792 749 False 1009.0 1009 90.969000 96 845 1 chr2D.!!$F3 749
7 TraesCS7D01G221500 chr3B 478550829 478551577 748 False 972.0 972 90.133000 96 843 1 chr3B.!!$F1 747
8 TraesCS7D01G221500 chr4A 418072852 418073552 700 False 942.0 942 91.076000 96 793 1 chr4A.!!$F1 697
9 TraesCS7D01G221500 chr5B 565795384 565796133 749 True 933.0 933 89.139000 96 848 1 chr5B.!!$R1 752
10 TraesCS7D01G221500 chr5A 364974464 364975215 751 False 926.0 926 89.036000 96 844 1 chr5A.!!$F1 748
11 TraesCS7D01G221500 chr2A 769257735 769258387 652 True 845.0 845 90.046000 192 843 1 chr2A.!!$R1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.038526 ACCTTAGACGCACAGTTCGG 60.039 55.000 0.00 0.0 0.00 4.30 F
59 60 0.038892 TTAGACGCACAGTTCGGGAC 60.039 55.000 0.00 0.0 0.00 4.46 F
393 399 0.047802 ATTCCCCATTCCCCTCTCCA 59.952 55.000 0.00 0.0 0.00 3.86 F
520 532 0.613777 GATGGAGTCCGGTGGTCTTT 59.386 55.000 4.30 0.0 0.00 2.52 F
1854 2042 1.269206 ACTTGCACGCAAATGTTCTGG 60.269 47.619 5.87 0.0 35.33 3.86 F
1952 2140 1.473258 TGATTTTGGCAGAATCCCCG 58.527 50.000 23.28 0.0 33.56 5.73 F
3345 3553 0.388659 CTTGGCTCGATCTCTCCCTG 59.611 60.000 0.00 0.0 0.00 4.45 F
4525 4758 1.372087 CGCCATCCTGTCCTTCTTGC 61.372 60.000 0.00 0.0 0.00 4.01 F
4877 5305 2.757894 TAGCTAGTCTCCCCTCCTTG 57.242 55.000 0.00 0.0 0.00 3.61 F
5808 6554 1.165270 GCGTTTGGTATGCACTTCCT 58.835 50.000 0.00 0.0 38.70 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1561 0.529773 GTGCCGGCATACTCAATCGA 60.530 55.000 35.23 0.19 0.00 3.59 R
1736 1794 2.298729 GCCAGTTTTGGGTCAAGCATTA 59.701 45.455 0.00 0.00 45.16 1.90 R
1930 2118 3.033184 GGGGATTCTGCCAAAATCATGA 58.967 45.455 0.00 0.00 35.30 3.07 R
2278 2481 6.350103 TGTAACTGACACTGACAATAACCAA 58.650 36.000 0.00 0.00 31.20 3.67 R
2905 3108 3.848975 AGAAGGGTGGTGAAGAGAATGAT 59.151 43.478 0.00 0.00 0.00 2.45 R
3369 3577 4.036852 TCTCGGCTAATGGCTATCATATCG 59.963 45.833 0.00 0.00 41.46 2.92 R
4877 5305 1.539157 CCTGAAACTTCCAGCCTTCC 58.461 55.000 0.00 0.00 0.00 3.46 R
5376 6118 2.092429 ACAGGATGGTATCGGTTTGCAT 60.092 45.455 0.00 0.00 43.62 3.96 R
5878 6624 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30 R
7446 8202 0.036105 ACGTTCATGGATCAGCAGCA 60.036 50.000 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.081462 GGGTAAACATTGTGTCCTCCG 58.919 52.381 0.00 0.00 0.00 4.63
21 22 2.551504 GGGTAAACATTGTGTCCTCCGT 60.552 50.000 0.00 0.00 0.00 4.69
22 23 2.740447 GGTAAACATTGTGTCCTCCGTC 59.260 50.000 0.00 0.00 0.00 4.79
23 24 2.930826 AAACATTGTGTCCTCCGTCT 57.069 45.000 0.00 0.00 0.00 4.18
24 25 2.457366 AACATTGTGTCCTCCGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
25 26 0.608640 ACATTGTGTCCTCCGTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
26 27 0.898320 CATTGTGTCCTCCGTCTCCT 59.102 55.000 0.00 0.00 0.00 3.69
27 28 0.898320 ATTGTGTCCTCCGTCTCCTG 59.102 55.000 0.00 0.00 0.00 3.86
28 29 0.469331 TTGTGTCCTCCGTCTCCTGT 60.469 55.000 0.00 0.00 0.00 4.00
29 30 0.469331 TGTGTCCTCCGTCTCCTGTT 60.469 55.000 0.00 0.00 0.00 3.16
30 31 1.202964 TGTGTCCTCCGTCTCCTGTTA 60.203 52.381 0.00 0.00 0.00 2.41
31 32 1.201880 GTGTCCTCCGTCTCCTGTTAC 59.798 57.143 0.00 0.00 0.00 2.50
32 33 0.816373 GTCCTCCGTCTCCTGTTACC 59.184 60.000 0.00 0.00 0.00 2.85
33 34 0.406750 TCCTCCGTCTCCTGTTACCA 59.593 55.000 0.00 0.00 0.00 3.25
34 35 1.006758 TCCTCCGTCTCCTGTTACCAT 59.993 52.381 0.00 0.00 0.00 3.55
35 36 1.409427 CCTCCGTCTCCTGTTACCATC 59.591 57.143 0.00 0.00 0.00 3.51
36 37 1.065701 CTCCGTCTCCTGTTACCATCG 59.934 57.143 0.00 0.00 0.00 3.84
37 38 1.100510 CCGTCTCCTGTTACCATCGA 58.899 55.000 0.00 0.00 0.00 3.59
38 39 1.202268 CCGTCTCCTGTTACCATCGAC 60.202 57.143 0.00 0.00 0.00 4.20
39 40 1.202268 CGTCTCCTGTTACCATCGACC 60.202 57.143 0.00 0.00 0.00 4.79
40 41 2.100989 GTCTCCTGTTACCATCGACCT 58.899 52.381 0.00 0.00 0.00 3.85
41 42 2.496470 GTCTCCTGTTACCATCGACCTT 59.504 50.000 0.00 0.00 0.00 3.50
42 43 3.698040 GTCTCCTGTTACCATCGACCTTA 59.302 47.826 0.00 0.00 0.00 2.69
43 44 3.952323 TCTCCTGTTACCATCGACCTTAG 59.048 47.826 0.00 0.00 0.00 2.18
44 45 3.952323 CTCCTGTTACCATCGACCTTAGA 59.048 47.826 0.00 0.00 0.00 2.10
45 46 3.698040 TCCTGTTACCATCGACCTTAGAC 59.302 47.826 0.00 0.00 0.00 2.59
46 47 3.488721 CCTGTTACCATCGACCTTAGACG 60.489 52.174 0.00 0.00 0.00 4.18
47 48 2.159338 TGTTACCATCGACCTTAGACGC 60.159 50.000 0.00 0.00 0.00 5.19
48 49 1.753930 TACCATCGACCTTAGACGCA 58.246 50.000 0.00 0.00 0.00 5.24
49 50 0.172803 ACCATCGACCTTAGACGCAC 59.827 55.000 0.00 0.00 0.00 5.34
50 51 0.172578 CCATCGACCTTAGACGCACA 59.827 55.000 0.00 0.00 0.00 4.57
51 52 1.550065 CATCGACCTTAGACGCACAG 58.450 55.000 0.00 0.00 0.00 3.66
52 53 1.135373 CATCGACCTTAGACGCACAGT 60.135 52.381 0.00 0.00 0.00 3.55
53 54 0.956633 TCGACCTTAGACGCACAGTT 59.043 50.000 0.00 0.00 0.00 3.16
54 55 1.068748 TCGACCTTAGACGCACAGTTC 60.069 52.381 0.00 0.00 0.00 3.01
55 56 1.337821 GACCTTAGACGCACAGTTCG 58.662 55.000 0.00 0.00 0.00 3.95
56 57 0.038526 ACCTTAGACGCACAGTTCGG 60.039 55.000 0.00 0.00 0.00 4.30
57 58 0.736325 CCTTAGACGCACAGTTCGGG 60.736 60.000 0.00 0.00 0.00 5.14
58 59 0.242825 CTTAGACGCACAGTTCGGGA 59.757 55.000 0.00 0.00 0.00 5.14
59 60 0.038892 TTAGACGCACAGTTCGGGAC 60.039 55.000 0.00 0.00 0.00 4.46
60 61 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
61 62 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
63 64 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
64 65 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
65 66 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
66 67 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
67 68 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
68 69 2.040114 GTTCGGGACCCCCTACCT 59.960 66.667 4.46 0.00 42.67 3.08
69 70 2.039951 TTCGGGACCCCCTACCTG 59.960 66.667 4.46 0.00 42.67 4.00
70 71 2.560083 TTCGGGACCCCCTACCTGA 61.560 63.158 4.46 0.00 42.67 3.86
71 72 2.444140 CGGGACCCCCTACCTGAG 60.444 72.222 4.46 0.00 42.67 3.35
72 73 3.005148 CGGGACCCCCTACCTGAGA 62.005 68.421 4.46 0.00 42.67 3.27
73 74 1.632740 GGGACCCCCTACCTGAGAT 59.367 63.158 0.00 0.00 41.34 2.75
74 75 0.472161 GGGACCCCCTACCTGAGATC 60.472 65.000 0.00 0.00 41.34 2.75
75 76 0.563672 GGACCCCCTACCTGAGATCT 59.436 60.000 0.00 0.00 0.00 2.75
76 77 1.710816 GACCCCCTACCTGAGATCTG 58.289 60.000 0.00 0.00 0.00 2.90
77 78 1.019650 ACCCCCTACCTGAGATCTGT 58.980 55.000 0.00 0.00 0.00 3.41
78 79 1.062810 ACCCCCTACCTGAGATCTGTC 60.063 57.143 0.00 0.00 0.00 3.51
79 80 1.323412 CCCCTACCTGAGATCTGTCG 58.677 60.000 0.00 0.00 0.00 4.35
80 81 1.323412 CCCTACCTGAGATCTGTCGG 58.677 60.000 0.00 0.00 0.00 4.79
81 82 1.410365 CCCTACCTGAGATCTGTCGGT 60.410 57.143 0.00 6.18 0.00 4.69
82 83 2.379972 CCTACCTGAGATCTGTCGGTT 58.620 52.381 0.00 0.00 0.00 4.44
83 84 2.761208 CCTACCTGAGATCTGTCGGTTT 59.239 50.000 0.00 0.00 0.00 3.27
84 85 3.195825 CCTACCTGAGATCTGTCGGTTTT 59.804 47.826 0.00 0.00 0.00 2.43
85 86 3.045601 ACCTGAGATCTGTCGGTTTTG 57.954 47.619 0.00 0.00 0.00 2.44
86 87 2.632996 ACCTGAGATCTGTCGGTTTTGA 59.367 45.455 0.00 0.00 0.00 2.69
87 88 2.996621 CCTGAGATCTGTCGGTTTTGAC 59.003 50.000 0.00 0.00 39.37 3.18
88 89 3.554960 CCTGAGATCTGTCGGTTTTGACA 60.555 47.826 0.00 0.00 46.15 3.58
89 90 3.390135 TGAGATCTGTCGGTTTTGACAC 58.610 45.455 0.00 0.00 43.62 3.67
90 91 2.737252 GAGATCTGTCGGTTTTGACACC 59.263 50.000 0.00 0.00 43.62 4.16
290 291 1.490910 CCAATCCCCCTTCTACTCCAC 59.509 57.143 0.00 0.00 0.00 4.02
292 293 1.027815 ATCCCCCTTCTACTCCACCT 58.972 55.000 0.00 0.00 0.00 4.00
393 399 0.047802 ATTCCCCATTCCCCTCTCCA 59.952 55.000 0.00 0.00 0.00 3.86
444 450 2.811431 CGGGAAAAAGTAGTGCATGACA 59.189 45.455 0.00 0.00 0.00 3.58
498 510 2.663188 GTGATGATCCGCTCGCCC 60.663 66.667 0.00 0.00 0.00 6.13
520 532 0.613777 GATGGAGTCCGGTGGTCTTT 59.386 55.000 4.30 0.00 0.00 2.52
538 550 1.275666 TTTTGCTCTCCTCCGATCCA 58.724 50.000 0.00 0.00 0.00 3.41
558 570 4.681978 GCCGCCGGTGAGAGTTGT 62.682 66.667 18.79 0.00 0.00 3.32
584 596 2.637640 GGGGAGAGTGGGGAGAGGA 61.638 68.421 0.00 0.00 0.00 3.71
639 652 4.612412 TTCGGGAAGCAACGCGGT 62.612 61.111 12.47 0.00 44.19 5.68
655 668 2.357034 GTTTCTCGAGCGTGGCCA 60.357 61.111 7.81 0.00 0.00 5.36
748 762 1.920325 CAGGGAGTCAGGCCAGGAA 60.920 63.158 5.01 0.00 0.00 3.36
772 786 1.610363 TTAAGGTTCGTGCCATGCAA 58.390 45.000 0.00 0.00 41.47 4.08
845 859 3.711059 GACCAGGCCTCATGCAGGG 62.711 68.421 0.00 0.72 43.70 4.45
1736 1794 9.726438 ATAGTTGCAACTTCTTAGTGAGTAAAT 57.274 29.630 35.20 15.48 40.37 1.40
1811 1993 6.285990 AGCATGATTTTTAGAATCCAATGGC 58.714 36.000 0.00 0.00 0.00 4.40
1854 2042 1.269206 ACTTGCACGCAAATGTTCTGG 60.269 47.619 5.87 0.00 35.33 3.86
1865 2053 4.624015 CAAATGTTCTGGCTGTTCACATT 58.376 39.130 10.92 10.92 39.26 2.71
1930 2118 4.154942 GGTCCCATTCCATGCTAATGAAT 58.845 43.478 16.46 4.87 36.61 2.57
1952 2140 1.473258 TGATTTTGGCAGAATCCCCG 58.527 50.000 23.28 0.00 33.56 5.73
2278 2481 3.230134 TGCTTGGGTGCATACTTTCTTT 58.770 40.909 0.00 0.00 38.12 2.52
2496 2699 2.561209 TCCCTGTACCTTCTATGCCA 57.439 50.000 0.00 0.00 0.00 4.92
2684 2887 2.102588 GCCTATGTGACCTTGTATCGGT 59.897 50.000 0.00 0.00 37.50 4.69
2739 2942 7.154191 ACATATCCACATGACCCTATTTCTT 57.846 36.000 0.00 0.00 0.00 2.52
3049 3252 5.681639 ACTGGTGCTAGTTTTCTTAGTTGT 58.318 37.500 0.00 0.00 0.00 3.32
3212 3419 3.827505 TCTGCAAGAAGGCTGGTTT 57.172 47.368 0.00 0.00 42.31 3.27
3345 3553 0.388659 CTTGGCTCGATCTCTCCCTG 59.611 60.000 0.00 0.00 0.00 4.45
3369 3577 8.181487 TGTATCTTTCACGTAATGTAAAGCTC 57.819 34.615 0.00 0.00 31.14 4.09
3529 3745 1.407618 TGCTTCGTATGTAGTCCGCAT 59.592 47.619 0.00 0.00 0.00 4.73
4256 4478 5.772825 TGCTGCTACAGTGAAATCTTTTT 57.227 34.783 0.00 0.00 33.43 1.94
4497 4730 8.748380 AAGAAAGGAAAATATGAGCTTTTTCG 57.252 30.769 12.79 0.00 40.89 3.46
4525 4758 1.372087 CGCCATCCTGTCCTTCTTGC 61.372 60.000 0.00 0.00 0.00 4.01
4628 4863 5.349738 TCCTCTATAGCCTAGGCCTAAAA 57.650 43.478 30.42 12.48 43.17 1.52
4812 5239 5.047188 CGTTGTGCACTATCACCATATACA 58.953 41.667 19.41 0.00 36.17 2.29
4877 5305 2.757894 TAGCTAGTCTCCCCTCCTTG 57.242 55.000 0.00 0.00 0.00 3.61
5376 6118 1.970640 TCTGCACTGTTCCTTCTGCTA 59.029 47.619 0.00 0.00 0.00 3.49
5424 6166 8.721478 CCACATCACCAGCAGTTATAAATATAC 58.279 37.037 0.00 0.00 0.00 1.47
5425 6167 9.271828 CACATCACCAGCAGTTATAAATATACA 57.728 33.333 0.00 0.00 0.00 2.29
5509 6252 2.894126 AGCCCGAAGATGGTAGACATAG 59.106 50.000 0.00 0.00 40.72 2.23
5808 6554 1.165270 GCGTTTGGTATGCACTTCCT 58.835 50.000 0.00 0.00 38.70 3.36
5872 6618 7.277174 AGTTCACTTCCAGTTTATTTCCTTG 57.723 36.000 0.00 0.00 0.00 3.61
5873 6619 6.833933 AGTTCACTTCCAGTTTATTTCCTTGT 59.166 34.615 0.00 0.00 0.00 3.16
5874 6620 7.996644 AGTTCACTTCCAGTTTATTTCCTTGTA 59.003 33.333 0.00 0.00 0.00 2.41
5875 6621 7.739498 TCACTTCCAGTTTATTTCCTTGTAC 57.261 36.000 0.00 0.00 0.00 2.90
5876 6622 7.514721 TCACTTCCAGTTTATTTCCTTGTACT 58.485 34.615 0.00 0.00 0.00 2.73
5877 6623 7.660208 TCACTTCCAGTTTATTTCCTTGTACTC 59.340 37.037 0.00 0.00 0.00 2.59
5878 6624 6.940867 ACTTCCAGTTTATTTCCTTGTACTCC 59.059 38.462 0.00 0.00 0.00 3.85
5879 6625 5.812286 TCCAGTTTATTTCCTTGTACTCCC 58.188 41.667 0.00 0.00 0.00 4.30
5880 6626 5.550403 TCCAGTTTATTTCCTTGTACTCCCT 59.450 40.000 0.00 0.00 0.00 4.20
5881 6627 5.880887 CCAGTTTATTTCCTTGTACTCCCTC 59.119 44.000 0.00 0.00 0.00 4.30
5882 6628 5.880887 CAGTTTATTTCCTTGTACTCCCTCC 59.119 44.000 0.00 0.00 0.00 4.30
5883 6629 4.748277 TTATTTCCTTGTACTCCCTCCG 57.252 45.455 0.00 0.00 0.00 4.63
5884 6630 2.019807 TTTCCTTGTACTCCCTCCGT 57.980 50.000 0.00 0.00 0.00 4.69
5885 6631 2.019807 TTCCTTGTACTCCCTCCGTT 57.980 50.000 0.00 0.00 0.00 4.44
5886 6632 2.019807 TCCTTGTACTCCCTCCGTTT 57.980 50.000 0.00 0.00 0.00 3.60
5887 6633 1.897802 TCCTTGTACTCCCTCCGTTTC 59.102 52.381 0.00 0.00 0.00 2.78
5888 6634 1.900486 CCTTGTACTCCCTCCGTTTCT 59.100 52.381 0.00 0.00 0.00 2.52
5889 6635 2.302157 CCTTGTACTCCCTCCGTTTCTT 59.698 50.000 0.00 0.00 0.00 2.52
5890 6636 3.244457 CCTTGTACTCCCTCCGTTTCTTT 60.244 47.826 0.00 0.00 0.00 2.52
5891 6637 4.386711 CTTGTACTCCCTCCGTTTCTTTT 58.613 43.478 0.00 0.00 0.00 2.27
5892 6638 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
5893 6639 5.549742 TGTACTCCCTCCGTTTCTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
5894 6640 5.299949 TGTACTCCCTCCGTTTCTTTTTAC 58.700 41.667 0.00 0.00 0.00 2.01
5895 6641 4.701651 ACTCCCTCCGTTTCTTTTTACT 57.298 40.909 0.00 0.00 0.00 2.24
5896 6642 4.639334 ACTCCCTCCGTTTCTTTTTACTC 58.361 43.478 0.00 0.00 0.00 2.59
5897 6643 4.001652 CTCCCTCCGTTTCTTTTTACTCC 58.998 47.826 0.00 0.00 0.00 3.85
5898 6644 2.740447 CCCTCCGTTTCTTTTTACTCCG 59.260 50.000 0.00 0.00 0.00 4.63
5899 6645 2.159037 CCTCCGTTTCTTTTTACTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
5900 6646 2.803956 CTCCGTTTCTTTTTACTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
5901 6647 3.404899 TCCGTTTCTTTTTACTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
5902 6648 4.567971 TCCGTTTCTTTTTACTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
5903 6649 5.180271 TCCGTTTCTTTTTACTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
5904 6650 6.339730 TCCGTTTCTTTTTACTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
5905 6651 6.817641 TCCGTTTCTTTTTACTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
5906 6652 7.010738 TCCGTTTCTTTTTACTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
5907 6653 7.010738 CCGTTTCTTTTTACTCCGCATATAAGA 59.989 37.037 0.00 0.00 0.00 2.10
5908 6654 8.548721 CGTTTCTTTTTACTCCGCATATAAGAT 58.451 33.333 0.00 0.00 0.00 2.40
5912 6658 8.836413 TCTTTTTACTCCGCATATAAGATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
5913 6659 8.514330 TTTTTACTCCGCATATAAGATTTGGT 57.486 30.769 0.00 0.00 0.00 3.67
5914 6660 7.724305 TTTACTCCGCATATAAGATTTGGTC 57.276 36.000 0.00 0.00 0.00 4.02
5915 6661 5.290493 ACTCCGCATATAAGATTTGGTCA 57.710 39.130 0.00 0.00 0.00 4.02
5916 6662 5.680619 ACTCCGCATATAAGATTTGGTCAA 58.319 37.500 0.00 0.00 0.00 3.18
5917 6663 6.119536 ACTCCGCATATAAGATTTGGTCAAA 58.880 36.000 0.00 0.00 34.46 2.69
5918 6664 6.260936 ACTCCGCATATAAGATTTGGTCAAAG 59.739 38.462 2.55 0.00 33.32 2.77
5919 6665 6.119536 TCCGCATATAAGATTTGGTCAAAGT 58.880 36.000 2.55 0.00 33.32 2.66
5920 6666 6.260050 TCCGCATATAAGATTTGGTCAAAGTC 59.740 38.462 2.55 1.51 33.32 3.01
5921 6667 6.038161 CCGCATATAAGATTTGGTCAAAGTCA 59.962 38.462 2.55 0.00 33.32 3.41
5922 6668 7.415095 CCGCATATAAGATTTGGTCAAAGTCAA 60.415 37.037 2.55 0.00 33.32 3.18
5923 6669 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
5924 6670 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
5928 6674 7.639113 AAGATTTGGTCAAAGTCAAACTACA 57.361 32.000 2.55 0.00 35.97 2.74
5929 6675 7.027778 AGATTTGGTCAAAGTCAAACTACAC 57.972 36.000 2.55 0.00 35.97 2.90
5930 6676 6.601613 AGATTTGGTCAAAGTCAAACTACACA 59.398 34.615 2.55 0.00 35.97 3.72
5931 6677 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
5932 6678 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
5933 6679 6.189677 TGGTCAAAGTCAAACTACACAAAG 57.810 37.500 0.00 0.00 0.00 2.77
5934 6680 5.708230 TGGTCAAAGTCAAACTACACAAAGT 59.292 36.000 0.00 0.00 0.00 2.66
5935 6681 6.207810 TGGTCAAAGTCAAACTACACAAAGTT 59.792 34.615 0.00 0.00 41.46 2.66
5946 6692 8.840833 AAACTACACAAAGTTTGACCAAATTT 57.159 26.923 22.23 11.30 45.60 1.82
5947 6693 9.930693 AAACTACACAAAGTTTGACCAAATTTA 57.069 25.926 22.23 0.00 45.60 1.40
6014 6760 5.932021 GAAAATACATTTCGTGGTGCATC 57.068 39.130 0.00 0.00 38.21 3.91
6015 6761 5.640732 GAAAATACATTTCGTGGTGCATCT 58.359 37.500 0.00 0.00 38.21 2.90
6016 6762 4.621068 AATACATTTCGTGGTGCATCTG 57.379 40.909 0.00 0.00 0.00 2.90
6017 6763 2.183478 ACATTTCGTGGTGCATCTGA 57.817 45.000 0.00 0.00 0.00 3.27
6018 6764 2.715046 ACATTTCGTGGTGCATCTGAT 58.285 42.857 0.00 0.00 0.00 2.90
6019 6765 3.872696 ACATTTCGTGGTGCATCTGATA 58.127 40.909 0.00 0.00 0.00 2.15
6020 6766 4.260985 ACATTTCGTGGTGCATCTGATAA 58.739 39.130 0.00 0.00 0.00 1.75
6021 6767 4.883585 ACATTTCGTGGTGCATCTGATAAT 59.116 37.500 0.00 0.00 0.00 1.28
6022 6768 4.880886 TTTCGTGGTGCATCTGATAATG 57.119 40.909 0.00 0.00 0.00 1.90
6023 6769 3.541996 TCGTGGTGCATCTGATAATGT 57.458 42.857 0.00 0.00 0.00 2.71
6024 6770 3.872696 TCGTGGTGCATCTGATAATGTT 58.127 40.909 0.00 0.00 0.00 2.71
6025 6771 3.622612 TCGTGGTGCATCTGATAATGTTG 59.377 43.478 0.00 0.00 0.00 3.33
6026 6772 3.622612 CGTGGTGCATCTGATAATGTTGA 59.377 43.478 0.00 0.00 0.00 3.18
6027 6773 4.274214 CGTGGTGCATCTGATAATGTTGAT 59.726 41.667 0.00 0.00 0.00 2.57
6028 6774 5.220912 CGTGGTGCATCTGATAATGTTGATT 60.221 40.000 0.00 0.00 0.00 2.57
6029 6775 6.567050 GTGGTGCATCTGATAATGTTGATTT 58.433 36.000 0.00 0.00 0.00 2.17
6030 6776 6.694411 GTGGTGCATCTGATAATGTTGATTTC 59.306 38.462 0.00 0.00 0.00 2.17
6031 6777 6.377712 TGGTGCATCTGATAATGTTGATTTCA 59.622 34.615 0.00 0.00 0.00 2.69
6032 6778 7.068962 TGGTGCATCTGATAATGTTGATTTCAT 59.931 33.333 0.00 0.00 0.00 2.57
6033 6779 8.570488 GGTGCATCTGATAATGTTGATTTCATA 58.430 33.333 0.00 0.00 0.00 2.15
6087 6833 8.276252 AGTTAGTCAAACTTTACAAAGCTTGA 57.724 30.769 13.75 13.75 46.61 3.02
6100 6846 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
6101 6847 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
6102 6848 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
6103 6849 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
6104 6850 5.140454 AGCTTGACTTTGACCAAACCTTAT 58.860 37.500 0.00 0.00 0.00 1.73
6105 6851 6.303839 AGCTTGACTTTGACCAAACCTTATA 58.696 36.000 0.00 0.00 0.00 0.98
6106 6852 6.948309 AGCTTGACTTTGACCAAACCTTATAT 59.052 34.615 0.00 0.00 0.00 0.86
6107 6853 7.029563 GCTTGACTTTGACCAAACCTTATATG 58.970 38.462 0.00 0.00 0.00 1.78
6108 6854 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
6109 6855 6.007076 TGACTTTGACCAAACCTTATATGCA 58.993 36.000 0.00 0.00 0.00 3.96
6110 6856 6.150976 TGACTTTGACCAAACCTTATATGCAG 59.849 38.462 0.00 0.00 0.00 4.41
6111 6857 6.245408 ACTTTGACCAAACCTTATATGCAGA 58.755 36.000 0.00 0.00 0.00 4.26
6112 6858 6.151144 ACTTTGACCAAACCTTATATGCAGAC 59.849 38.462 0.00 0.00 0.00 3.51
6113 6859 5.435686 TGACCAAACCTTATATGCAGACT 57.564 39.130 0.00 0.00 0.00 3.24
6114 6860 6.553953 TGACCAAACCTTATATGCAGACTA 57.446 37.500 0.00 0.00 0.00 2.59
6115 6861 6.953101 TGACCAAACCTTATATGCAGACTAA 58.047 36.000 0.00 0.00 0.00 2.24
6116 6862 7.398829 TGACCAAACCTTATATGCAGACTAAA 58.601 34.615 0.00 0.00 0.00 1.85
6117 6863 7.885922 TGACCAAACCTTATATGCAGACTAAAA 59.114 33.333 0.00 0.00 0.00 1.52
6118 6864 8.644374 ACCAAACCTTATATGCAGACTAAAAA 57.356 30.769 0.00 0.00 0.00 1.94
6119 6865 8.739972 ACCAAACCTTATATGCAGACTAAAAAG 58.260 33.333 0.00 0.00 0.00 2.27
6120 6866 8.956426 CCAAACCTTATATGCAGACTAAAAAGA 58.044 33.333 0.00 0.00 0.00 2.52
6124 6870 8.665685 ACCTTATATGCAGACTAAAAAGAAACG 58.334 33.333 0.00 0.00 0.00 3.60
6125 6871 8.122952 CCTTATATGCAGACTAAAAAGAAACGG 58.877 37.037 0.00 0.00 0.00 4.44
6126 6872 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
6127 6873 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
6128 6874 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
6129 6875 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
6130 6876 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
6131 6877 4.691216 CAGACTAAAAAGAAACGGAGGGAG 59.309 45.833 0.00 0.00 0.00 4.30
6252 6998 2.579684 AATCTGTTCTCGGCGGGCTC 62.580 60.000 7.21 0.00 0.00 4.70
6395 7141 7.877097 ACTAGTACTAGAATACACATAGGACGG 59.123 40.741 31.93 4.51 35.82 4.79
6443 7189 2.674954 TGCATTTTGTCAAGCAATCGG 58.325 42.857 0.00 0.00 36.89 4.18
6814 7560 9.160496 AGAATTTGTTGTTTGCATTTTTAGACA 57.840 25.926 0.00 0.00 0.00 3.41
6879 7625 1.502231 CCGTCACATGCTATACCTGC 58.498 55.000 0.00 0.00 0.00 4.85
6912 7659 3.450457 GGTGAAATAATTGATGGGGTGCA 59.550 43.478 0.00 0.00 0.00 4.57
6944 7692 3.325425 TCCCTATTTCCTGACGTTTGTGA 59.675 43.478 0.00 0.00 0.00 3.58
6949 7697 1.227438 CCTGACGTTTGTGACCGGT 60.227 57.895 6.92 6.92 0.00 5.28
6957 7705 2.608546 CGTTTGTGACCGGTCAACTTAA 59.391 45.455 37.75 25.21 41.85 1.85
7003 7751 9.825972 ATTGAACGTGTAATGTCTATTTTCAAG 57.174 29.630 0.00 0.00 34.28 3.02
7024 7772 3.297134 TTTCTGCAGTTCTGAAACCCT 57.703 42.857 14.67 0.00 37.60 4.34
7026 7774 4.640771 TTCTGCAGTTCTGAAACCCTAT 57.359 40.909 14.67 0.00 35.92 2.57
7027 7775 3.942829 TCTGCAGTTCTGAAACCCTATG 58.057 45.455 14.67 0.00 35.92 2.23
7031 7779 4.943705 TGCAGTTCTGAAACCCTATGATTC 59.056 41.667 3.84 0.00 35.92 2.52
7032 7780 4.336713 GCAGTTCTGAAACCCTATGATTCC 59.663 45.833 3.84 0.00 35.92 3.01
7033 7781 5.749462 CAGTTCTGAAACCCTATGATTCCT 58.251 41.667 0.00 0.00 35.92 3.36
7034 7782 5.587844 CAGTTCTGAAACCCTATGATTCCTG 59.412 44.000 0.00 0.00 35.92 3.86
7035 7783 4.156455 TCTGAAACCCTATGATTCCTGC 57.844 45.455 0.00 0.00 0.00 4.85
7036 7784 3.117888 TCTGAAACCCTATGATTCCTGCC 60.118 47.826 0.00 0.00 0.00 4.85
7037 7785 2.222027 GAAACCCTATGATTCCTGCCG 58.778 52.381 0.00 0.00 0.00 5.69
7038 7786 0.179018 AACCCTATGATTCCTGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
7039 7787 1.056700 ACCCTATGATTCCTGCCGCT 61.057 55.000 0.00 0.00 0.00 5.52
7040 7788 0.604780 CCCTATGATTCCTGCCGCTG 60.605 60.000 0.00 0.00 0.00 5.18
7041 7789 0.394192 CCTATGATTCCTGCCGCTGA 59.606 55.000 0.00 0.00 0.00 4.26
7042 7790 1.202687 CCTATGATTCCTGCCGCTGAA 60.203 52.381 0.00 0.00 0.00 3.02
7043 7791 2.141517 CTATGATTCCTGCCGCTGAAG 58.858 52.381 0.00 0.00 0.00 3.02
7044 7792 1.099879 ATGATTCCTGCCGCTGAAGC 61.100 55.000 0.00 2.06 37.78 3.86
7045 7793 1.746615 GATTCCTGCCGCTGAAGCA 60.747 57.895 2.79 0.00 42.21 3.91
7046 7794 1.986575 GATTCCTGCCGCTGAAGCAC 61.987 60.000 2.79 0.00 42.21 4.40
7047 7795 2.475371 ATTCCTGCCGCTGAAGCACT 62.475 55.000 2.79 0.00 42.21 4.40
7048 7796 1.826340 TTCCTGCCGCTGAAGCACTA 61.826 55.000 2.79 0.00 42.21 2.74
7054 7802 2.280628 GCCGCTGAAGCACTAGTATTT 58.719 47.619 0.00 0.00 42.21 1.40
7081 7829 8.553459 TTGACTTTGACCTATCTTCATTTCTC 57.447 34.615 0.00 0.00 0.00 2.87
7101 7849 4.136796 CTCTCTTCACAACATGGACCAAA 58.863 43.478 0.00 0.00 0.00 3.28
7103 7851 4.580167 TCTCTTCACAACATGGACCAAAAG 59.420 41.667 0.00 0.00 0.00 2.27
7109 7857 2.185004 ACATGGACCAAAAGGAGACG 57.815 50.000 0.00 0.00 0.00 4.18
7114 7864 2.224209 TGGACCAAAAGGAGACGAGAAC 60.224 50.000 0.00 0.00 0.00 3.01
7133 7883 4.754618 AGAACACAATCTTGTTGATGCGTA 59.245 37.500 0.00 0.00 39.88 4.42
7136 7886 4.694982 ACACAATCTTGTTGATGCGTATGA 59.305 37.500 0.00 0.00 39.91 2.15
7139 7889 6.035975 CACAATCTTGTTGATGCGTATGACTA 59.964 38.462 0.00 0.00 39.91 2.59
7144 7894 6.593770 TCTTGTTGATGCGTATGACTACAAAT 59.406 34.615 0.00 0.00 30.89 2.32
7149 7899 2.350192 TGCGTATGACTACAAATTGGCG 59.650 45.455 0.00 0.00 0.00 5.69
7169 7919 3.489229 GCGCAAGTCATAGGAATTTTCCC 60.489 47.826 0.30 0.00 44.45 3.97
7215 7965 1.799258 CTGCAGGGAAACAGGTGTGC 61.799 60.000 5.57 0.00 0.00 4.57
7230 7980 3.063704 TGCTCGCCATGGCCTTTG 61.064 61.111 30.79 16.82 37.98 2.77
7236 7986 1.097547 CGCCATGGCCTTTGGAGTAG 61.098 60.000 30.79 8.86 36.26 2.57
7243 7993 5.656416 CCATGGCCTTTGGAGTAGAAAATTA 59.344 40.000 17.66 0.00 36.26 1.40
7250 8000 6.128007 CCTTTGGAGTAGAAAATTATGCGTGT 60.128 38.462 0.00 0.00 0.00 4.49
7371 8125 5.386060 TCTTCCTTTTCCTTCTTCCCTTTC 58.614 41.667 0.00 0.00 0.00 2.62
7389 8143 2.847327 TCTCTGGGTTTCAAGCTCTG 57.153 50.000 0.00 0.00 0.00 3.35
7390 8144 1.349026 TCTCTGGGTTTCAAGCTCTGG 59.651 52.381 0.00 0.00 0.00 3.86
7413 8169 1.984570 TTCTCGTCAGGCTCAGGGG 60.985 63.158 0.00 0.00 0.00 4.79
7414 8170 2.681778 CTCGTCAGGCTCAGGGGT 60.682 66.667 0.00 0.00 0.00 4.95
7415 8171 2.680352 TCGTCAGGCTCAGGGGTC 60.680 66.667 0.00 0.00 0.00 4.46
7416 8172 2.997315 CGTCAGGCTCAGGGGTCA 60.997 66.667 0.00 0.00 0.00 4.02
7417 8173 2.985456 GTCAGGCTCAGGGGTCAG 59.015 66.667 0.00 0.00 0.00 3.51
7418 8174 2.284921 TCAGGCTCAGGGGTCAGG 60.285 66.667 0.00 0.00 0.00 3.86
7419 8175 3.406200 CAGGCTCAGGGGTCAGGG 61.406 72.222 0.00 0.00 0.00 4.45
7422 8178 3.650950 GCTCAGGGGTCAGGGCAA 61.651 66.667 0.00 0.00 0.00 4.52
7434 8190 0.251077 CAGGGCAAGAGGAAGCAACT 60.251 55.000 0.00 0.00 0.00 3.16
7442 8198 0.538287 GAGGAAGCAACTGGTTGGCT 60.538 55.000 14.17 9.28 40.74 4.75
7444 8200 1.662044 GAAGCAACTGGTTGGCTGG 59.338 57.895 14.17 0.00 40.74 4.85
7446 8202 2.914097 GCAACTGGTTGGCTGGCT 60.914 61.111 14.17 0.00 40.74 4.75
7447 8203 3.045142 CAACTGGTTGGCTGGCTG 58.955 61.111 2.00 0.00 36.95 4.85
7448 8204 2.914097 AACTGGTTGGCTGGCTGC 60.914 61.111 7.96 7.96 41.94 5.25
7449 8205 3.441712 AACTGGTTGGCTGGCTGCT 62.442 57.895 16.14 0.00 42.39 4.24
7509 8265 0.534412 CTGGAGCCTCGTGTCATTCT 59.466 55.000 0.00 0.00 0.00 2.40
7514 8270 1.648467 GCCTCGTGTCATTCTTGCCC 61.648 60.000 0.00 0.00 0.00 5.36
7558 8314 1.302993 GCTCCGCCAAAGGTAACCA 60.303 57.895 0.00 0.00 37.17 3.67
7559 8315 0.891904 GCTCCGCCAAAGGTAACCAA 60.892 55.000 0.00 0.00 37.17 3.67
7560 8316 0.879090 CTCCGCCAAAGGTAACCAAC 59.121 55.000 0.00 0.00 37.17 3.77
7572 8328 1.890489 GTAACCAACCAACACCATCCC 59.110 52.381 0.00 0.00 0.00 3.85
7573 8329 0.471022 AACCAACCAACACCATCCCC 60.471 55.000 0.00 0.00 0.00 4.81
7574 8330 1.976474 CCAACCAACACCATCCCCG 60.976 63.158 0.00 0.00 0.00 5.73
7575 8331 2.282887 AACCAACACCATCCCCGC 60.283 61.111 0.00 0.00 0.00 6.13
7576 8332 3.879180 AACCAACACCATCCCCGCC 62.879 63.158 0.00 0.00 0.00 6.13
7577 8333 4.047125 CCAACACCATCCCCGCCT 62.047 66.667 0.00 0.00 0.00 5.52
7578 8334 2.438434 CAACACCATCCCCGCCTC 60.438 66.667 0.00 0.00 0.00 4.70
7579 8335 3.728373 AACACCATCCCCGCCTCC 61.728 66.667 0.00 0.00 0.00 4.30
7590 8346 4.787280 CGCCTCCCCCTGTCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
7591 8347 2.696893 GCCTCCCCCTGTCCTCTA 59.303 66.667 0.00 0.00 0.00 2.43
7592 8348 1.003051 GCCTCCCCCTGTCCTCTAA 59.997 63.158 0.00 0.00 0.00 2.10
7593 8349 0.400670 GCCTCCCCCTGTCCTCTAAT 60.401 60.000 0.00 0.00 0.00 1.73
7594 8350 1.428869 CCTCCCCCTGTCCTCTAATG 58.571 60.000 0.00 0.00 0.00 1.90
7595 8351 1.344496 CCTCCCCCTGTCCTCTAATGT 60.344 57.143 0.00 0.00 0.00 2.71
7596 8352 2.043227 CTCCCCCTGTCCTCTAATGTC 58.957 57.143 0.00 0.00 0.00 3.06
7597 8353 1.132500 CCCCCTGTCCTCTAATGTCC 58.868 60.000 0.00 0.00 0.00 4.02
7598 8354 0.753262 CCCCTGTCCTCTAATGTCCG 59.247 60.000 0.00 0.00 0.00 4.79
7599 8355 1.688311 CCCCTGTCCTCTAATGTCCGA 60.688 57.143 0.00 0.00 0.00 4.55
7600 8356 1.683917 CCCTGTCCTCTAATGTCCGAG 59.316 57.143 0.00 0.00 0.00 4.63
7601 8357 1.683917 CCTGTCCTCTAATGTCCGAGG 59.316 57.143 0.00 0.00 46.52 4.63
7602 8358 1.067821 CTGTCCTCTAATGTCCGAGGC 59.932 57.143 0.00 0.00 45.12 4.70
7603 8359 0.030908 GTCCTCTAATGTCCGAGGCG 59.969 60.000 0.00 0.00 45.12 5.52
7619 8375 2.358247 CGGTTACCGCTGCCTTGT 60.358 61.111 11.93 0.00 41.17 3.16
7620 8376 2.388232 CGGTTACCGCTGCCTTGTC 61.388 63.158 11.93 0.00 41.17 3.18
7621 8377 2.038837 GGTTACCGCTGCCTTGTCC 61.039 63.158 0.00 0.00 0.00 4.02
7622 8378 1.003718 GTTACCGCTGCCTTGTCCT 60.004 57.895 0.00 0.00 0.00 3.85
7623 8379 1.019805 GTTACCGCTGCCTTGTCCTC 61.020 60.000 0.00 0.00 0.00 3.71
7624 8380 2.180159 TTACCGCTGCCTTGTCCTCC 62.180 60.000 0.00 0.00 0.00 4.30
7625 8381 4.020617 CCGCTGCCTTGTCCTCCA 62.021 66.667 0.00 0.00 0.00 3.86
7626 8382 2.032528 CGCTGCCTTGTCCTCCAA 59.967 61.111 0.00 0.00 0.00 3.53
7643 8399 3.614092 TCCAAGTCGGAGTAGTATTCGT 58.386 45.455 0.00 0.00 39.64 3.85
7644 8400 4.012374 TCCAAGTCGGAGTAGTATTCGTT 58.988 43.478 0.00 0.00 39.64 3.85
7645 8401 4.103357 CCAAGTCGGAGTAGTATTCGTTG 58.897 47.826 0.00 0.00 36.56 4.10
7646 8402 4.380233 CCAAGTCGGAGTAGTATTCGTTGT 60.380 45.833 0.00 0.00 36.56 3.32
7647 8403 4.352600 AGTCGGAGTAGTATTCGTTGTG 57.647 45.455 0.00 0.00 0.00 3.33
7648 8404 3.755378 AGTCGGAGTAGTATTCGTTGTGT 59.245 43.478 0.00 0.00 0.00 3.72
7649 8405 4.217118 AGTCGGAGTAGTATTCGTTGTGTT 59.783 41.667 0.00 0.00 0.00 3.32
7650 8406 4.556523 GTCGGAGTAGTATTCGTTGTGTTC 59.443 45.833 0.00 0.00 0.00 3.18
7651 8407 4.216042 TCGGAGTAGTATTCGTTGTGTTCA 59.784 41.667 0.00 0.00 0.00 3.18
7652 8408 5.100259 CGGAGTAGTATTCGTTGTGTTCAT 58.900 41.667 0.00 0.00 0.00 2.57
7653 8409 5.004440 CGGAGTAGTATTCGTTGTGTTCATG 59.996 44.000 0.00 0.00 0.00 3.07
7654 8410 6.097356 GGAGTAGTATTCGTTGTGTTCATGA 58.903 40.000 0.00 0.00 0.00 3.07
7655 8411 6.757010 GGAGTAGTATTCGTTGTGTTCATGAT 59.243 38.462 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.081462 CGGAGGACACAATGTTTACCC 58.919 52.381 0.00 0.00 0.00 3.69
1 2 2.740447 GACGGAGGACACAATGTTTACC 59.260 50.000 0.00 0.00 0.00 2.85
2 3 3.660865 AGACGGAGGACACAATGTTTAC 58.339 45.455 0.00 0.00 0.00 2.01
3 4 3.306502 GGAGACGGAGGACACAATGTTTA 60.307 47.826 0.00 0.00 0.00 2.01
4 5 2.550208 GGAGACGGAGGACACAATGTTT 60.550 50.000 0.00 0.00 0.00 2.83
5 6 1.002087 GGAGACGGAGGACACAATGTT 59.998 52.381 0.00 0.00 0.00 2.71
6 7 0.608640 GGAGACGGAGGACACAATGT 59.391 55.000 0.00 0.00 0.00 2.71
7 8 0.898320 AGGAGACGGAGGACACAATG 59.102 55.000 0.00 0.00 0.00 2.82
8 9 0.898320 CAGGAGACGGAGGACACAAT 59.102 55.000 0.00 0.00 0.00 2.71
9 10 0.469331 ACAGGAGACGGAGGACACAA 60.469 55.000 0.00 0.00 0.00 3.33
10 11 0.469331 AACAGGAGACGGAGGACACA 60.469 55.000 0.00 0.00 0.00 3.72
11 12 1.201880 GTAACAGGAGACGGAGGACAC 59.798 57.143 0.00 0.00 0.00 3.67
12 13 1.542492 GTAACAGGAGACGGAGGACA 58.458 55.000 0.00 0.00 0.00 4.02
13 14 0.816373 GGTAACAGGAGACGGAGGAC 59.184 60.000 0.00 0.00 0.00 3.85
14 15 0.406750 TGGTAACAGGAGACGGAGGA 59.593 55.000 0.00 0.00 46.17 3.71
15 16 2.971676 TGGTAACAGGAGACGGAGG 58.028 57.895 0.00 0.00 46.17 4.30
27 28 2.159338 TGCGTCTAAGGTCGATGGTAAC 60.159 50.000 0.00 0.00 0.00 2.50
28 29 2.093890 TGCGTCTAAGGTCGATGGTAA 58.906 47.619 0.00 0.00 0.00 2.85
29 30 1.402968 GTGCGTCTAAGGTCGATGGTA 59.597 52.381 0.00 0.00 0.00 3.25
30 31 0.172803 GTGCGTCTAAGGTCGATGGT 59.827 55.000 0.00 0.00 0.00 3.55
31 32 0.172578 TGTGCGTCTAAGGTCGATGG 59.827 55.000 0.00 0.00 0.00 3.51
32 33 1.135373 ACTGTGCGTCTAAGGTCGATG 60.135 52.381 0.00 0.00 0.00 3.84
33 34 1.174783 ACTGTGCGTCTAAGGTCGAT 58.825 50.000 0.00 0.00 0.00 3.59
34 35 0.956633 AACTGTGCGTCTAAGGTCGA 59.043 50.000 0.00 0.00 0.00 4.20
35 36 1.337821 GAACTGTGCGTCTAAGGTCG 58.662 55.000 0.00 0.00 0.00 4.79
36 37 1.337821 CGAACTGTGCGTCTAAGGTC 58.662 55.000 0.00 0.00 0.00 3.85
37 38 0.038526 CCGAACTGTGCGTCTAAGGT 60.039 55.000 7.51 0.00 0.00 3.50
38 39 0.736325 CCCGAACTGTGCGTCTAAGG 60.736 60.000 7.51 0.00 0.00 2.69
39 40 0.242825 TCCCGAACTGTGCGTCTAAG 59.757 55.000 7.51 0.00 0.00 2.18
40 41 0.038892 GTCCCGAACTGTGCGTCTAA 60.039 55.000 7.51 0.00 0.00 2.10
41 42 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
42 43 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
43 44 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
44 45 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
46 47 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
49 50 2.817420 AGGTAGGGGGTCCCGAACTG 62.817 65.000 0.48 0.00 44.62 3.16
55 56 0.472161 GATCTCAGGTAGGGGGTCCC 60.472 65.000 0.00 0.00 45.90 4.46
56 57 0.563672 AGATCTCAGGTAGGGGGTCC 59.436 60.000 0.00 0.00 0.00 4.46
57 58 1.062810 ACAGATCTCAGGTAGGGGGTC 60.063 57.143 0.00 0.00 0.00 4.46
58 59 1.019650 ACAGATCTCAGGTAGGGGGT 58.980 55.000 0.00 0.00 0.00 4.95
59 60 1.710816 GACAGATCTCAGGTAGGGGG 58.289 60.000 0.00 0.00 0.00 5.40
60 61 1.323412 CGACAGATCTCAGGTAGGGG 58.677 60.000 0.00 0.00 0.00 4.79
61 62 1.323412 CCGACAGATCTCAGGTAGGG 58.677 60.000 0.00 0.00 0.00 3.53
62 63 2.060050 ACCGACAGATCTCAGGTAGG 57.940 55.000 10.59 9.60 32.76 3.18
63 64 4.082190 TCAAAACCGACAGATCTCAGGTAG 60.082 45.833 12.19 7.28 34.35 3.18
64 65 3.830178 TCAAAACCGACAGATCTCAGGTA 59.170 43.478 12.19 0.00 34.35 3.08
65 66 2.632996 TCAAAACCGACAGATCTCAGGT 59.367 45.455 7.31 7.31 36.66 4.00
66 67 2.996621 GTCAAAACCGACAGATCTCAGG 59.003 50.000 0.00 0.00 35.88 3.86
67 68 3.430218 GTGTCAAAACCGACAGATCTCAG 59.570 47.826 0.00 0.00 46.23 3.35
68 69 3.390135 GTGTCAAAACCGACAGATCTCA 58.610 45.455 0.00 0.00 46.23 3.27
69 70 2.737252 GGTGTCAAAACCGACAGATCTC 59.263 50.000 0.00 0.00 46.23 2.75
70 71 2.767505 GGTGTCAAAACCGACAGATCT 58.232 47.619 0.00 0.00 46.23 2.75
79 80 1.652563 GCCTGTCGGTGTCAAAACC 59.347 57.895 0.00 0.00 36.82 3.27
80 81 1.278637 CGCCTGTCGGTGTCAAAAC 59.721 57.895 0.00 0.00 36.03 2.43
81 82 2.539338 GCGCCTGTCGGTGTCAAAA 61.539 57.895 0.00 0.00 42.91 2.44
82 83 2.970324 GCGCCTGTCGGTGTCAAA 60.970 61.111 0.00 0.00 42.91 2.69
83 84 4.980805 GGCGCCTGTCGGTGTCAA 62.981 66.667 22.15 0.00 44.80 3.18
112 113 1.542030 GATCGATCTGCCAGGTACGAT 59.458 52.381 18.29 16.42 41.83 3.73
253 254 1.128809 TGGGGGTACACAACGGACAT 61.129 55.000 0.00 0.00 0.00 3.06
290 291 3.157881 TCGGAATAGAGGTAGATGCAGG 58.842 50.000 0.00 0.00 0.00 4.85
292 293 4.667573 AGATCGGAATAGAGGTAGATGCA 58.332 43.478 0.00 0.00 0.00 3.96
393 399 2.093973 GGCGATAGATTGGATCCACGAT 60.094 50.000 15.91 6.24 39.76 3.73
403 409 1.986378 GTTCGATCCGGCGATAGATTG 59.014 52.381 9.30 7.01 40.35 2.67
498 510 2.184322 CCACCGGACTCCATCACG 59.816 66.667 9.46 0.00 0.00 4.35
520 532 0.537188 GTGGATCGGAGGAGAGCAAA 59.463 55.000 0.00 0.00 0.00 3.68
558 570 1.079256 CCACTCTCCCCCACTCTCA 59.921 63.158 0.00 0.00 0.00 3.27
639 652 2.357034 GTGGCCACGCTCGAGAAA 60.357 61.111 22.49 0.00 0.00 2.52
748 762 1.904287 TGGCACGAACCTTAAAGCAT 58.096 45.000 0.00 0.00 0.00 3.79
772 786 1.523758 CCTGCTTTTACTGTTCGGCT 58.476 50.000 0.00 0.00 0.00 5.52
845 859 6.942886 TTTCGCATTTGATTTGGTACATTC 57.057 33.333 0.00 0.00 39.30 2.67
1085 1126 4.082523 CAGCCCCTTCCTTCGCGA 62.083 66.667 3.71 3.71 0.00 5.87
1516 1561 0.529773 GTGCCGGCATACTCAATCGA 60.530 55.000 35.23 0.19 0.00 3.59
1736 1794 2.298729 GCCAGTTTTGGGTCAAGCATTA 59.701 45.455 0.00 0.00 45.16 1.90
1865 2053 5.721480 TCCTTCTAAGAACCATCACAGATCA 59.279 40.000 0.00 0.00 0.00 2.92
1930 2118 3.033184 GGGGATTCTGCCAAAATCATGA 58.967 45.455 0.00 0.00 35.30 3.07
1952 2140 7.097192 TGACAGTAGGTACAATTTCTGATCAC 58.903 38.462 0.00 0.00 0.00 3.06
2278 2481 6.350103 TGTAACTGACACTGACAATAACCAA 58.650 36.000 0.00 0.00 31.20 3.67
2496 2699 8.588472 AGAAATAAGCAAAGAAAGCCTGTTAAT 58.412 29.630 0.00 0.00 0.00 1.40
2684 2887 5.184864 CCCAGGAAAGTACATGCAATTGTAA 59.815 40.000 7.40 0.00 34.05 2.41
2739 2942 6.428159 GCAACTGAGAAGAGTAAGAAATGGAA 59.572 38.462 0.00 0.00 0.00 3.53
2864 3067 5.049818 GCTCTGATACCATGCAAGTCAATAC 60.050 44.000 0.00 0.00 0.00 1.89
2905 3108 3.848975 AGAAGGGTGGTGAAGAGAATGAT 59.151 43.478 0.00 0.00 0.00 2.45
3345 3553 7.219535 TCGAGCTTTACATTACGTGAAAGATAC 59.780 37.037 0.00 0.00 31.92 2.24
3369 3577 4.036852 TCTCGGCTAATGGCTATCATATCG 59.963 45.833 0.00 0.00 41.46 2.92
3433 3649 9.449719 GTCCTTATGGAAATCTCTAAAAAGACA 57.550 33.333 0.00 0.00 45.18 3.41
3448 3664 7.931015 ACATCCTTATGTAGTCCTTATGGAA 57.069 36.000 0.00 0.00 44.66 3.53
3499 3715 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
4256 4478 6.761099 TGTACAGTGCTGTAAAAAGGAAAA 57.239 33.333 12.94 0.00 46.33 2.29
4497 4730 2.045926 AGGATGGCGGCACACTTC 60.046 61.111 16.34 7.94 0.00 3.01
4525 4758 3.809832 ACACTTCTTTGAATCTGGACACG 59.190 43.478 0.00 0.00 0.00 4.49
4628 4863 4.903045 TGAAATCCGAAAACCCTAGAGT 57.097 40.909 0.00 0.00 0.00 3.24
4699 5126 2.397597 ACATCAAAGGCCAACAAACCT 58.602 42.857 5.01 0.00 38.14 3.50
4812 5239 7.177568 AGACTAATCACCGAGCTATTCATACAT 59.822 37.037 0.00 0.00 0.00 2.29
4877 5305 1.539157 CCTGAAACTTCCAGCCTTCC 58.461 55.000 0.00 0.00 0.00 3.46
5376 6118 2.092429 ACAGGATGGTATCGGTTTGCAT 60.092 45.455 0.00 0.00 43.62 3.96
5872 6618 5.545588 AGTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
5873 6619 5.279657 GGAGTAAAAAGAAACGGAGGGAGTA 60.280 44.000 0.00 0.00 0.00 2.59
5874 6620 4.504514 GGAGTAAAAAGAAACGGAGGGAGT 60.505 45.833 0.00 0.00 0.00 3.85
5875 6621 4.001652 GGAGTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
5876 6622 3.555586 CGGAGTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
5877 6623 2.740447 CGGAGTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
5878 6624 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
5879 6625 2.803956 TGCGGAGTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
5880 6626 2.836262 TGCGGAGTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
5881 6627 3.824414 ATGCGGAGTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
5882 6628 7.902032 TCTTATATGCGGAGTAAAAAGAAACG 58.098 34.615 0.00 0.00 0.00 3.60
5886 6632 8.836413 CCAAATCTTATATGCGGAGTAAAAAGA 58.164 33.333 0.00 0.00 0.00 2.52
5887 6633 8.621286 ACCAAATCTTATATGCGGAGTAAAAAG 58.379 33.333 0.00 0.00 0.00 2.27
5888 6634 8.514330 ACCAAATCTTATATGCGGAGTAAAAA 57.486 30.769 0.00 0.00 0.00 1.94
5889 6635 7.771361 TGACCAAATCTTATATGCGGAGTAAAA 59.229 33.333 0.00 0.00 0.00 1.52
5890 6636 7.276658 TGACCAAATCTTATATGCGGAGTAAA 58.723 34.615 0.00 0.00 0.00 2.01
5891 6637 6.822442 TGACCAAATCTTATATGCGGAGTAA 58.178 36.000 0.00 0.00 0.00 2.24
5892 6638 6.413783 TGACCAAATCTTATATGCGGAGTA 57.586 37.500 0.00 0.00 0.00 2.59
5893 6639 5.290493 TGACCAAATCTTATATGCGGAGT 57.710 39.130 0.00 0.00 0.00 3.85
5894 6640 6.260936 ACTTTGACCAAATCTTATATGCGGAG 59.739 38.462 0.00 0.00 0.00 4.63
5895 6641 6.119536 ACTTTGACCAAATCTTATATGCGGA 58.880 36.000 0.00 0.00 0.00 5.54
5896 6642 6.038161 TGACTTTGACCAAATCTTATATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
5897 6643 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
5898 6644 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
5902 6648 9.349713 TGTAGTTTGACTTTGACCAAATCTTAT 57.650 29.630 0.00 0.00 35.14 1.73
5903 6649 8.617809 GTGTAGTTTGACTTTGACCAAATCTTA 58.382 33.333 0.00 0.00 35.14 2.10
5904 6650 7.122055 TGTGTAGTTTGACTTTGACCAAATCTT 59.878 33.333 0.00 0.00 35.14 2.40
5905 6651 6.601613 TGTGTAGTTTGACTTTGACCAAATCT 59.398 34.615 0.00 0.00 35.14 2.40
5906 6652 6.791303 TGTGTAGTTTGACTTTGACCAAATC 58.209 36.000 0.00 0.00 35.14 2.17
5907 6653 6.767524 TGTGTAGTTTGACTTTGACCAAAT 57.232 33.333 0.00 0.00 35.14 2.32
5908 6654 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
5909 6655 6.207810 ACTTTGTGTAGTTTGACTTTGACCAA 59.792 34.615 0.00 0.00 0.00 3.67
5910 6656 5.708230 ACTTTGTGTAGTTTGACTTTGACCA 59.292 36.000 0.00 0.00 0.00 4.02
5911 6657 6.190954 ACTTTGTGTAGTTTGACTTTGACC 57.809 37.500 0.00 0.00 0.00 4.02
5921 6667 8.840833 AAATTTGGTCAAACTTTGTGTAGTTT 57.159 26.923 1.44 0.00 46.42 2.66
5985 6731 8.342634 GCACCACGAAATGTATTTTCATACTAT 58.657 33.333 0.00 0.00 43.32 2.12
5986 6732 7.334671 TGCACCACGAAATGTATTTTCATACTA 59.665 33.333 0.00 0.00 43.32 1.82
5987 6733 6.150307 TGCACCACGAAATGTATTTTCATACT 59.850 34.615 0.00 0.00 43.32 2.12
5988 6734 6.318628 TGCACCACGAAATGTATTTTCATAC 58.681 36.000 0.00 0.00 43.32 2.39
5989 6735 6.502136 TGCACCACGAAATGTATTTTCATA 57.498 33.333 0.00 0.00 43.32 2.15
5990 6736 5.384063 TGCACCACGAAATGTATTTTCAT 57.616 34.783 0.00 0.00 43.32 2.57
5991 6737 4.837896 TGCACCACGAAATGTATTTTCA 57.162 36.364 0.00 0.00 43.32 2.69
5992 6738 5.512788 CAGATGCACCACGAAATGTATTTTC 59.487 40.000 0.00 0.00 40.34 2.29
5993 6739 5.182950 TCAGATGCACCACGAAATGTATTTT 59.817 36.000 0.00 0.00 0.00 1.82
5994 6740 4.699735 TCAGATGCACCACGAAATGTATTT 59.300 37.500 0.00 0.00 0.00 1.40
5995 6741 4.260985 TCAGATGCACCACGAAATGTATT 58.739 39.130 0.00 0.00 0.00 1.89
5996 6742 3.872696 TCAGATGCACCACGAAATGTAT 58.127 40.909 0.00 0.00 0.00 2.29
5997 6743 3.326836 TCAGATGCACCACGAAATGTA 57.673 42.857 0.00 0.00 0.00 2.29
5998 6744 2.183478 TCAGATGCACCACGAAATGT 57.817 45.000 0.00 0.00 0.00 2.71
5999 6745 4.880886 TTATCAGATGCACCACGAAATG 57.119 40.909 0.00 0.00 0.00 2.32
6000 6746 4.883585 ACATTATCAGATGCACCACGAAAT 59.116 37.500 0.00 0.00 0.00 2.17
6001 6747 4.260985 ACATTATCAGATGCACCACGAAA 58.739 39.130 0.00 0.00 0.00 3.46
6002 6748 3.872696 ACATTATCAGATGCACCACGAA 58.127 40.909 0.00 0.00 0.00 3.85
6003 6749 3.541996 ACATTATCAGATGCACCACGA 57.458 42.857 0.00 0.00 0.00 4.35
6004 6750 3.622612 TCAACATTATCAGATGCACCACG 59.377 43.478 0.00 0.00 0.00 4.94
6005 6751 5.762825 ATCAACATTATCAGATGCACCAC 57.237 39.130 0.00 0.00 0.00 4.16
6006 6752 6.377712 TGAAATCAACATTATCAGATGCACCA 59.622 34.615 0.00 0.00 0.00 4.17
6007 6753 6.798482 TGAAATCAACATTATCAGATGCACC 58.202 36.000 0.00 0.00 0.00 5.01
6080 6826 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
6081 6827 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
6082 6828 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
6083 6829 7.029563 GCATATAAGGTTTGGTCAAAGTCAAG 58.970 38.462 0.00 0.00 0.00 3.02
6084 6830 6.491745 TGCATATAAGGTTTGGTCAAAGTCAA 59.508 34.615 0.00 0.00 0.00 3.18
6085 6831 6.007076 TGCATATAAGGTTTGGTCAAAGTCA 58.993 36.000 0.00 0.00 0.00 3.41
6086 6832 6.374333 TCTGCATATAAGGTTTGGTCAAAGTC 59.626 38.462 0.00 0.00 0.00 3.01
6087 6833 6.151144 GTCTGCATATAAGGTTTGGTCAAAGT 59.849 38.462 0.00 0.00 0.00 2.66
6088 6834 6.375455 AGTCTGCATATAAGGTTTGGTCAAAG 59.625 38.462 0.00 0.00 0.00 2.77
6089 6835 6.245408 AGTCTGCATATAAGGTTTGGTCAAA 58.755 36.000 0.00 0.00 0.00 2.69
6090 6836 5.815581 AGTCTGCATATAAGGTTTGGTCAA 58.184 37.500 0.00 0.00 0.00 3.18
6091 6837 5.435686 AGTCTGCATATAAGGTTTGGTCA 57.564 39.130 0.00 0.00 0.00 4.02
6092 6838 7.859325 TTTAGTCTGCATATAAGGTTTGGTC 57.141 36.000 0.00 0.00 0.00 4.02
6093 6839 8.644374 TTTTTAGTCTGCATATAAGGTTTGGT 57.356 30.769 0.00 0.00 0.00 3.67
6094 6840 8.956426 TCTTTTTAGTCTGCATATAAGGTTTGG 58.044 33.333 0.00 0.00 0.00 3.28
6098 6844 8.665685 CGTTTCTTTTTAGTCTGCATATAAGGT 58.334 33.333 0.00 0.00 0.00 3.50
6099 6845 8.122952 CCGTTTCTTTTTAGTCTGCATATAAGG 58.877 37.037 0.00 0.00 0.00 2.69
6100 6846 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
6101 6847 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
6102 6848 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
6103 6849 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
6104 6850 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
6105 6851 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
6106 6852 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
6107 6853 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
6108 6854 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
6109 6855 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
6110 6856 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
6111 6857 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
6112 6858 8.959705 ATAATACTCCCTCCGTTTCTTTTTAG 57.040 34.615 0.00 0.00 0.00 1.85
6113 6859 9.743581 AAATAATACTCCCTCCGTTTCTTTTTA 57.256 29.630 0.00 0.00 0.00 1.52
6114 6860 8.520351 CAAATAATACTCCCTCCGTTTCTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
6115 6861 7.886446 TCAAATAATACTCCCTCCGTTTCTTTT 59.114 33.333 0.00 0.00 0.00 2.27
6116 6862 7.399634 TCAAATAATACTCCCTCCGTTTCTTT 58.600 34.615 0.00 0.00 0.00 2.52
6117 6863 6.954232 TCAAATAATACTCCCTCCGTTTCTT 58.046 36.000 0.00 0.00 0.00 2.52
6118 6864 6.555463 TCAAATAATACTCCCTCCGTTTCT 57.445 37.500 0.00 0.00 0.00 2.52
6119 6865 8.897872 TTATCAAATAATACTCCCTCCGTTTC 57.102 34.615 0.00 0.00 0.00 2.78
6120 6866 9.862149 ATTTATCAAATAATACTCCCTCCGTTT 57.138 29.630 0.00 0.00 0.00 3.60
6121 6867 9.862149 AATTTATCAAATAATACTCCCTCCGTT 57.138 29.630 0.00 0.00 0.00 4.44
6122 6868 9.862149 AAATTTATCAAATAATACTCCCTCCGT 57.138 29.630 0.00 0.00 0.00 4.69
6196 6942 4.917415 GGCACACTGAAATCAAATACACAC 59.083 41.667 0.00 0.00 0.00 3.82
6252 6998 6.237175 CGTTGCCAACAAAATATGTATTGTCG 60.237 38.462 8.51 0.00 42.99 4.35
6369 7115 7.877097 CCGTCCTATGTGTATTCTAGTACTAGT 59.123 40.741 25.58 12.85 34.84 2.57
6385 7131 5.825593 AATCAATGATACCCGTCCTATGT 57.174 39.130 0.00 0.00 0.00 2.29
6443 7189 6.470235 GTGACACTGCATCAAAACTAATATGC 59.530 38.462 0.00 0.00 43.92 3.14
6458 7204 2.347114 CCATCGGGTGACACTGCA 59.653 61.111 5.39 0.00 0.00 4.41
6890 7636 3.450457 TGCACCCCATCAATTATTTCACC 59.550 43.478 0.00 0.00 0.00 4.02
6892 7638 4.776837 ACTTGCACCCCATCAATTATTTCA 59.223 37.500 0.00 0.00 0.00 2.69
6912 7659 4.597507 TCAGGAAATAGGGACAACAGACTT 59.402 41.667 0.00 0.00 0.00 3.01
6944 7692 1.585297 CGTTGGTTAAGTTGACCGGT 58.415 50.000 6.92 6.92 40.13 5.28
6949 7697 2.223618 GCCTTTGCGTTGGTTAAGTTGA 60.224 45.455 0.00 0.00 0.00 3.18
7003 7751 2.952310 AGGGTTTCAGAACTGCAGAAAC 59.048 45.455 23.35 18.92 46.36 2.78
7024 7772 1.811558 GCTTCAGCGGCAGGAATCATA 60.812 52.381 1.45 0.00 0.00 2.15
7026 7774 1.746615 GCTTCAGCGGCAGGAATCA 60.747 57.895 1.45 0.00 0.00 2.57
7027 7775 1.746615 TGCTTCAGCGGCAGGAATC 60.747 57.895 1.45 2.16 45.83 2.52
7031 7779 1.812922 CTAGTGCTTCAGCGGCAGG 60.813 63.158 1.45 0.00 45.83 4.85
7032 7780 0.173481 TACTAGTGCTTCAGCGGCAG 59.827 55.000 5.39 0.00 45.83 4.85
7033 7781 0.824109 ATACTAGTGCTTCAGCGGCA 59.176 50.000 5.39 0.00 45.83 5.69
7034 7782 1.941325 AATACTAGTGCTTCAGCGGC 58.059 50.000 5.39 0.00 45.83 6.53
7035 7783 4.946784 AAAAATACTAGTGCTTCAGCGG 57.053 40.909 5.39 0.00 45.83 5.52
7054 7802 9.354673 AGAAATGAAGATAGGTCAAAGTCAAAA 57.645 29.630 0.00 0.00 0.00 2.44
7081 7829 4.261741 CCTTTTGGTCCATGTTGTGAAGAG 60.262 45.833 0.00 0.00 34.07 2.85
7101 7849 4.202264 ACAAGATTGTGTTCTCGTCTCCTT 60.202 41.667 0.00 0.00 40.49 3.36
7103 7851 3.654414 ACAAGATTGTGTTCTCGTCTCC 58.346 45.455 0.00 0.00 40.49 3.71
7109 7857 4.153986 CGCATCAACAAGATTGTGTTCTC 58.846 43.478 0.00 0.00 41.31 2.87
7114 7864 5.023920 GTCATACGCATCAACAAGATTGTG 58.976 41.667 0.00 0.00 41.31 3.33
7133 7883 2.819608 ACTTGCGCCAATTTGTAGTCAT 59.180 40.909 4.18 0.00 0.00 3.06
7136 7886 2.226330 TGACTTGCGCCAATTTGTAGT 58.774 42.857 4.18 0.00 0.00 2.73
7139 7889 2.164219 CCTATGACTTGCGCCAATTTGT 59.836 45.455 4.18 0.00 0.00 2.83
7144 7894 2.418368 ATTCCTATGACTTGCGCCAA 57.582 45.000 4.18 0.00 0.00 4.52
7149 7899 5.185828 ACAAGGGAAAATTCCTATGACTTGC 59.814 40.000 19.41 1.49 46.72 4.01
7156 7906 3.697166 ACGCACAAGGGAAAATTCCTAT 58.303 40.909 11.75 0.00 46.72 2.57
7169 7919 3.309682 TCTCAAGAGTTTCAACGCACAAG 59.690 43.478 0.00 0.00 0.00 3.16
7215 7965 2.045045 TCCAAAGGCCATGGCGAG 60.045 61.111 29.90 18.24 43.06 5.03
7227 7977 6.607689 CACACGCATAATTTTCTACTCCAAA 58.392 36.000 0.00 0.00 0.00 3.28
7230 7980 4.332819 AGCACACGCATAATTTTCTACTCC 59.667 41.667 0.00 0.00 42.27 3.85
7236 7986 3.126858 TCTCCAGCACACGCATAATTTTC 59.873 43.478 0.00 0.00 42.27 2.29
7243 7993 2.435586 GCTCTCCAGCACACGCAT 60.436 61.111 0.00 0.00 46.06 4.73
7308 8058 3.063084 GTGAGAGTCCCGAGCGGT 61.063 66.667 8.25 0.00 0.00 5.68
7347 8098 5.403558 AAGGGAAGAAGGAAAAGGAAGAA 57.596 39.130 0.00 0.00 0.00 2.52
7371 8125 1.072965 ACCAGAGCTTGAAACCCAGAG 59.927 52.381 0.00 0.00 0.00 3.35
7389 8143 0.733223 GAGCCTGACGAGAACGAACC 60.733 60.000 0.00 0.00 42.66 3.62
7390 8144 0.039437 TGAGCCTGACGAGAACGAAC 60.039 55.000 0.00 0.00 42.66 3.95
7413 8169 0.250901 TTGCTTCCTCTTGCCCTGAC 60.251 55.000 0.00 0.00 0.00 3.51
7414 8170 0.250901 GTTGCTTCCTCTTGCCCTGA 60.251 55.000 0.00 0.00 0.00 3.86
7415 8171 0.251077 AGTTGCTTCCTCTTGCCCTG 60.251 55.000 0.00 0.00 0.00 4.45
7416 8172 0.251077 CAGTTGCTTCCTCTTGCCCT 60.251 55.000 0.00 0.00 0.00 5.19
7417 8173 1.246737 CCAGTTGCTTCCTCTTGCCC 61.247 60.000 0.00 0.00 0.00 5.36
7418 8174 0.538287 ACCAGTTGCTTCCTCTTGCC 60.538 55.000 0.00 0.00 0.00 4.52
7419 8175 1.000938 CAACCAGTTGCTTCCTCTTGC 60.001 52.381 0.00 0.00 33.45 4.01
7422 8178 0.538287 GCCAACCAGTTGCTTCCTCT 60.538 55.000 4.96 0.00 39.16 3.69
7442 8198 1.453197 CATGGATCAGCAGCAGCCA 60.453 57.895 0.00 0.00 43.56 4.75
7444 8200 0.381089 GTTCATGGATCAGCAGCAGC 59.619 55.000 0.00 0.00 42.56 5.25
7446 8202 0.036105 ACGTTCATGGATCAGCAGCA 60.036 50.000 0.00 0.00 0.00 4.41
7447 8203 0.654683 GACGTTCATGGATCAGCAGC 59.345 55.000 0.00 0.00 0.00 5.25
7448 8204 1.293924 GGACGTTCATGGATCAGCAG 58.706 55.000 0.00 0.00 0.00 4.24
7449 8205 0.107703 GGGACGTTCATGGATCAGCA 60.108 55.000 0.00 0.00 0.00 4.41
7501 8257 2.224523 ACGAAGAAGGGCAAGAATGACA 60.225 45.455 0.00 0.00 35.69 3.58
7502 8258 2.416893 GACGAAGAAGGGCAAGAATGAC 59.583 50.000 0.00 0.00 0.00 3.06
7509 8265 0.836400 AGGAGGACGAAGAAGGGCAA 60.836 55.000 0.00 0.00 0.00 4.52
7514 8270 0.174617 GCAGGAGGAGGACGAAGAAG 59.825 60.000 0.00 0.00 0.00 2.85
7558 8314 2.282887 GCGGGGATGGTGTTGGTT 60.283 61.111 0.00 0.00 0.00 3.67
7559 8315 4.360405 GGCGGGGATGGTGTTGGT 62.360 66.667 0.00 0.00 0.00 3.67
7560 8316 3.995506 GAGGCGGGGATGGTGTTGG 62.996 68.421 0.00 0.00 0.00 3.77
7561 8317 2.438434 GAGGCGGGGATGGTGTTG 60.438 66.667 0.00 0.00 0.00 3.33
7562 8318 3.728373 GGAGGCGGGGATGGTGTT 61.728 66.667 0.00 0.00 0.00 3.32
7573 8329 2.873557 TTAGAGGACAGGGGGAGGCG 62.874 65.000 0.00 0.00 0.00 5.52
7574 8330 0.400670 ATTAGAGGACAGGGGGAGGC 60.401 60.000 0.00 0.00 0.00 4.70
7575 8331 1.344496 ACATTAGAGGACAGGGGGAGG 60.344 57.143 0.00 0.00 0.00 4.30
7576 8332 2.043227 GACATTAGAGGACAGGGGGAG 58.957 57.143 0.00 0.00 0.00 4.30
7577 8333 1.344087 GGACATTAGAGGACAGGGGGA 60.344 57.143 0.00 0.00 0.00 4.81
7578 8334 1.132500 GGACATTAGAGGACAGGGGG 58.868 60.000 0.00 0.00 0.00 5.40
7579 8335 0.753262 CGGACATTAGAGGACAGGGG 59.247 60.000 0.00 0.00 0.00 4.79
7580 8336 1.683917 CTCGGACATTAGAGGACAGGG 59.316 57.143 0.00 0.00 0.00 4.45
7603 8359 2.038837 GGACAAGGCAGCGGTAACC 61.039 63.158 0.00 0.00 0.00 2.85
7604 8360 1.003718 AGGACAAGGCAGCGGTAAC 60.004 57.895 0.00 0.00 0.00 2.50
7605 8361 1.295423 GAGGACAAGGCAGCGGTAA 59.705 57.895 0.00 0.00 0.00 2.85
7606 8362 2.656069 GGAGGACAAGGCAGCGGTA 61.656 63.158 0.00 0.00 0.00 4.02
7607 8363 4.021925 GGAGGACAAGGCAGCGGT 62.022 66.667 0.00 0.00 0.00 5.68
7608 8364 3.551496 TTGGAGGACAAGGCAGCGG 62.551 63.158 0.00 0.00 33.18 5.52
7609 8365 2.032528 TTGGAGGACAAGGCAGCG 59.967 61.111 0.00 0.00 33.18 5.18
7623 8379 4.103357 CAACGAATACTACTCCGACTTGG 58.897 47.826 0.00 0.00 40.09 3.61
7624 8380 4.557690 CACAACGAATACTACTCCGACTTG 59.442 45.833 0.00 0.00 0.00 3.16
7625 8381 4.217118 ACACAACGAATACTACTCCGACTT 59.783 41.667 0.00 0.00 0.00 3.01
7626 8382 3.755378 ACACAACGAATACTACTCCGACT 59.245 43.478 0.00 0.00 0.00 4.18
7627 8383 4.088823 ACACAACGAATACTACTCCGAC 57.911 45.455 0.00 0.00 0.00 4.79
7628 8384 4.216042 TGAACACAACGAATACTACTCCGA 59.784 41.667 0.00 0.00 0.00 4.55
7629 8385 4.478699 TGAACACAACGAATACTACTCCG 58.521 43.478 0.00 0.00 0.00 4.63
7630 8386 6.097356 TCATGAACACAACGAATACTACTCC 58.903 40.000 0.00 0.00 0.00 3.85
7631 8387 7.757097 ATCATGAACACAACGAATACTACTC 57.243 36.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.