Multiple sequence alignment - TraesCS7D01G220300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G220300 chr7D 100.000 7269 0 0 1 7269 180692392 180685124 0.000000e+00 13424.0
1 TraesCS7D01G220300 chr7D 94.086 186 11 0 394 579 217622516 217622331 4.290000e-72 283.0
2 TraesCS7D01G220300 chr7B 94.895 3095 105 32 581 3644 146905274 146902202 0.000000e+00 4791.0
3 TraesCS7D01G220300 chr7B 96.869 2459 58 9 4341 6789 146901097 146898648 0.000000e+00 4096.0
4 TraesCS7D01G220300 chr7B 93.535 495 14 6 3639 4125 146901720 146901236 0.000000e+00 721.0
5 TraesCS7D01G220300 chr7B 93.595 484 21 5 6786 7269 146898344 146897871 0.000000e+00 713.0
6 TraesCS7D01G220300 chr7B 93.293 164 8 2 1 163 146905433 146905272 9.420000e-59 239.0
7 TraesCS7D01G220300 chr7B 94.068 118 4 1 4189 4306 146901214 146901100 7.490000e-40 176.0
8 TraesCS7D01G220300 chr7B 90.909 77 7 0 6928 7004 146898136 146898060 3.590000e-18 104.0
9 TraesCS7D01G220300 chr7A 93.929 1779 63 14 4881 6643 185644307 185642558 0.000000e+00 2645.0
10 TraesCS7D01G220300 chr7A 89.340 1773 93 49 935 2663 185648166 185646446 0.000000e+00 2139.0
11 TraesCS7D01G220300 chr7A 95.068 1034 49 2 2719 3750 185646447 185645414 0.000000e+00 1626.0
12 TraesCS7D01G220300 chr7A 88.685 707 55 11 6565 7269 185642558 185641875 0.000000e+00 839.0
13 TraesCS7D01G220300 chr7A 97.180 461 7 3 4264 4718 185644769 185644309 0.000000e+00 774.0
14 TraesCS7D01G220300 chr7A 88.042 577 20 13 3710 4269 185645364 185644820 7.950000e-179 638.0
15 TraesCS7D01G220300 chr7A 86.957 207 26 1 581 787 185648607 185648402 1.580000e-56 231.0
16 TraesCS7D01G220300 chr7A 97.959 98 2 0 1 98 185648748 185648651 3.490000e-38 171.0
17 TraesCS7D01G220300 chr7A 93.421 76 5 0 6929 7004 185642138 185642063 5.960000e-21 113.0
18 TraesCS7D01G220300 chr7A 100.000 41 0 0 3710 3750 185645409 185645369 7.820000e-10 76.8
19 TraesCS7D01G220300 chrUn 100.000 408 0 0 2269 2676 477959013 477958606 0.000000e+00 754.0
20 TraesCS7D01G220300 chr5D 90.930 430 28 4 160 579 341560636 341561064 1.060000e-157 568.0
21 TraesCS7D01G220300 chr5D 92.045 264 11 3 162 416 421912900 421912638 5.360000e-96 363.0
22 TraesCS7D01G220300 chr5D 93.548 186 12 0 394 579 342525904 342525719 2.000000e-70 278.0
23 TraesCS7D01G220300 chr3D 94.760 229 12 0 164 392 350583277 350583049 2.490000e-94 357.0
24 TraesCS7D01G220300 chr3D 91.321 265 14 2 161 416 479616749 479617013 3.230000e-93 353.0
25 TraesCS7D01G220300 chr3D 91.221 262 14 2 164 416 42515720 42515459 1.500000e-91 348.0
26 TraesCS7D01G220300 chr4D 91.635 263 12 3 163 416 256577537 256577276 8.970000e-94 355.0
27 TraesCS7D01G220300 chr4D 91.288 264 14 2 162 416 108101795 108101532 1.160000e-92 351.0
28 TraesCS7D01G220300 chr4D 93.548 186 12 0 394 579 170665552 170665367 2.000000e-70 278.0
29 TraesCS7D01G220300 chr4D 93.548 186 12 0 394 579 481841936 481841751 2.000000e-70 278.0
30 TraesCS7D01G220300 chr4D 93.122 189 13 0 391 579 506212413 506212601 2.000000e-70 278.0
31 TraesCS7D01G220300 chr4D 89.573 211 21 1 369 579 363245946 363245737 4.320000e-67 267.0
32 TraesCS7D01G220300 chr6D 94.017 234 13 1 159 392 254820555 254820323 3.230000e-93 353.0
33 TraesCS7D01G220300 chr6D 93.122 189 13 0 391 579 159027592 159027780 2.000000e-70 278.0
34 TraesCS7D01G220300 chr1D 93.249 237 14 2 157 392 15568714 15568479 1.500000e-91 348.0
35 TraesCS7D01G220300 chr5A 93.548 186 12 0 394 579 370090059 370089874 2.000000e-70 278.0
36 TraesCS7D01G220300 chr1B 93.122 189 13 0 391 579 305284649 305284837 2.000000e-70 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G220300 chr7D 180685124 180692392 7268 True 13424.000000 13424 100.000000 1 7269 1 chr7D.!!$R1 7268
1 TraesCS7D01G220300 chr7B 146897871 146905433 7562 True 1548.571429 4791 93.880571 1 7269 7 chr7B.!!$R1 7268
2 TraesCS7D01G220300 chr7A 185641875 185648748 6873 True 925.280000 2645 93.058100 1 7269 10 chr7A.!!$R1 7268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 513 0.036164 AATGTAGTGTGGCGCCTTCA 59.964 50.000 29.70 22.99 0.00 3.02 F
512 514 0.253044 ATGTAGTGTGGCGCCTTCAT 59.747 50.000 29.70 17.99 0.00 2.57 F
515 517 0.391130 TAGTGTGGCGCCTTCATGTC 60.391 55.000 29.70 14.26 0.00 3.06 F
572 574 0.396435 TCACGGGCAGTTCATTCTGT 59.604 50.000 0.00 0.00 37.70 3.41 F
574 576 0.396435 ACGGGCAGTTCATTCTGTGA 59.604 50.000 0.00 0.00 37.70 3.58 F
600 602 0.624785 AGAGTCTACTAGTGGCGGGT 59.375 55.000 5.39 0.00 0.00 5.28 F
689 691 0.892755 GGGACGTCACTGACATGGTA 59.107 55.000 18.91 0.00 32.09 3.25 F
980 1082 1.042229 ACTACTTGTACCGCACCACA 58.958 50.000 0.00 0.00 0.00 4.17 F
2888 3040 0.035056 TCCTGGAGCTGGCTTAAAGC 60.035 55.000 0.00 0.00 41.46 3.51 F
2969 3122 0.176910 TTTACTGCCGATCCGATGCA 59.823 50.000 0.00 0.00 0.00 3.96 F
3074 3227 1.895707 GTGTGCTTCACAGCCTGCT 60.896 57.895 0.00 0.00 45.43 4.24 F
4244 4999 2.052782 TAGCGGACTGTGAGCATCTA 57.947 50.000 6.81 0.00 34.92 1.98 F
5894 6718 0.039074 GTACAGCGGATGGATCTCGG 60.039 60.000 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 1745 0.323629 TGGCTCGAGGAAAACCGATT 59.676 50.000 15.58 0.0 34.08 3.34 R
2215 2359 2.184385 GCAAGAAGCATCGTGAATGG 57.816 50.000 9.08 0.0 44.79 3.16 R
2676 2828 6.017687 GCATACATGAGACTAACATGATGCAA 60.018 38.462 23.11 7.0 45.13 4.08 R
2716 2868 9.071276 AGGATATAAAATCATAAACCAGCACAG 57.929 33.333 0.00 0.0 0.00 3.66 R
2750 2902 6.835819 TGTGTGCTAGTAGAACTCATTAGT 57.164 37.500 9.78 0.0 37.65 2.24 R
2782 2934 6.398918 ACCTGTGTAGTAGTGACAATCAATC 58.601 40.000 0.00 0.0 0.00 2.67 R
2787 2939 6.420913 AGAAACCTGTGTAGTAGTGACAAT 57.579 37.500 0.00 0.0 0.00 2.71 R
3074 3227 1.040646 CTTCTAGGCAGCGGACCATA 58.959 55.000 0.00 0.0 0.00 2.74 R
3765 4503 1.871080 AGCATATTGTAGGCAGCGTC 58.129 50.000 0.00 0.0 38.06 5.19 R
4446 5262 2.095372 GGCGTATACTGCACAAGGAAAC 59.905 50.000 17.33 0.0 0.00 2.78 R
4792 5608 4.152647 AGTATGTCTGCATCGGAGGAATA 58.847 43.478 0.00 0.0 36.58 1.75 R
5981 6806 0.107017 CAAGGGTAGGTGGATGCCAG 60.107 60.000 0.00 0.0 32.34 4.85 R
6829 8049 0.982852 AGGATGATTCCACGCAGGGA 60.983 55.000 0.00 0.0 45.30 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 175 2.380064 ACCAGTGAGGGCAAATTTGA 57.620 45.000 22.31 0.00 43.89 2.69
174 176 2.893424 ACCAGTGAGGGCAAATTTGAT 58.107 42.857 22.31 6.53 43.89 2.57
175 177 4.046286 ACCAGTGAGGGCAAATTTGATA 57.954 40.909 22.31 0.00 43.89 2.15
176 178 4.415596 ACCAGTGAGGGCAAATTTGATAA 58.584 39.130 22.31 0.00 43.89 1.75
177 179 4.837860 ACCAGTGAGGGCAAATTTGATAAA 59.162 37.500 22.31 0.00 43.89 1.40
178 180 5.484998 ACCAGTGAGGGCAAATTTGATAAAT 59.515 36.000 22.31 2.18 43.89 1.40
179 181 6.013466 ACCAGTGAGGGCAAATTTGATAAATT 60.013 34.615 22.31 0.50 43.89 1.82
180 182 7.474650 ACCAGTGAGGGCAAATTTGATAAATTT 60.475 33.333 22.31 6.47 45.51 1.82
190 192 7.566658 AAATTTGATAAATTTGACCTGGGGA 57.433 32.000 10.48 0.00 46.30 4.81
191 193 5.993748 TTTGATAAATTTGACCTGGGGAC 57.006 39.130 0.00 0.00 0.00 4.46
192 194 3.616219 TGATAAATTTGACCTGGGGACG 58.384 45.455 0.00 0.00 0.00 4.79
193 195 3.264706 TGATAAATTTGACCTGGGGACGA 59.735 43.478 0.00 0.00 0.00 4.20
194 196 2.668144 AAATTTGACCTGGGGACGAA 57.332 45.000 0.00 0.00 0.00 3.85
195 197 2.668144 AATTTGACCTGGGGACGAAA 57.332 45.000 0.00 0.00 0.00 3.46
196 198 2.899303 ATTTGACCTGGGGACGAAAT 57.101 45.000 0.00 0.00 0.00 2.17
197 199 2.194201 TTTGACCTGGGGACGAAATC 57.806 50.000 0.00 0.00 0.00 2.17
198 200 1.060729 TTGACCTGGGGACGAAATCA 58.939 50.000 0.00 0.00 0.00 2.57
199 201 1.060729 TGACCTGGGGACGAAATCAA 58.939 50.000 0.00 0.00 0.00 2.57
200 202 1.422024 TGACCTGGGGACGAAATCAAA 59.578 47.619 0.00 0.00 0.00 2.69
201 203 2.041081 TGACCTGGGGACGAAATCAAAT 59.959 45.455 0.00 0.00 0.00 2.32
202 204 2.683362 GACCTGGGGACGAAATCAAATC 59.317 50.000 0.00 0.00 0.00 2.17
203 205 2.041081 ACCTGGGGACGAAATCAAATCA 59.959 45.455 0.00 0.00 0.00 2.57
204 206 2.423538 CCTGGGGACGAAATCAAATCAC 59.576 50.000 0.00 0.00 0.00 3.06
205 207 3.081061 CTGGGGACGAAATCAAATCACA 58.919 45.455 0.00 0.00 0.00 3.58
206 208 3.491342 TGGGGACGAAATCAAATCACAA 58.509 40.909 0.00 0.00 0.00 3.33
207 209 3.891977 TGGGGACGAAATCAAATCACAAA 59.108 39.130 0.00 0.00 0.00 2.83
208 210 4.342378 TGGGGACGAAATCAAATCACAAAA 59.658 37.500 0.00 0.00 0.00 2.44
209 211 5.011533 TGGGGACGAAATCAAATCACAAAAT 59.988 36.000 0.00 0.00 0.00 1.82
210 212 5.348451 GGGGACGAAATCAAATCACAAAATG 59.652 40.000 0.00 0.00 0.00 2.32
211 213 6.155827 GGGACGAAATCAAATCACAAAATGA 58.844 36.000 0.00 0.00 43.13 2.57
212 214 6.644592 GGGACGAAATCAAATCACAAAATGAA 59.355 34.615 0.00 0.00 41.93 2.57
213 215 7.359181 GGGACGAAATCAAATCACAAAATGAAC 60.359 37.037 0.00 0.00 41.93 3.18
214 216 7.382218 GGACGAAATCAAATCACAAAATGAACT 59.618 33.333 0.00 0.00 41.93 3.01
215 217 8.064447 ACGAAATCAAATCACAAAATGAACTG 57.936 30.769 0.00 0.00 41.93 3.16
216 218 7.706179 ACGAAATCAAATCACAAAATGAACTGT 59.294 29.630 0.00 0.00 41.93 3.55
217 219 8.209869 CGAAATCAAATCACAAAATGAACTGTC 58.790 33.333 0.00 0.00 41.93 3.51
218 220 7.951530 AATCAAATCACAAAATGAACTGTCC 57.048 32.000 0.00 0.00 41.93 4.02
219 221 5.518812 TCAAATCACAAAATGAACTGTCCG 58.481 37.500 0.00 0.00 41.93 4.79
220 222 5.067153 TCAAATCACAAAATGAACTGTCCGT 59.933 36.000 0.00 0.00 41.93 4.69
221 223 3.961477 TCACAAAATGAACTGTCCGTG 57.039 42.857 0.00 0.00 33.02 4.94
222 224 3.536570 TCACAAAATGAACTGTCCGTGA 58.463 40.909 0.00 0.00 33.02 4.35
223 225 3.942115 TCACAAAATGAACTGTCCGTGAA 59.058 39.130 0.00 0.00 33.02 3.18
224 226 4.396478 TCACAAAATGAACTGTCCGTGAAA 59.604 37.500 0.00 0.00 33.02 2.69
225 227 4.499040 CACAAAATGAACTGTCCGTGAAAC 59.501 41.667 0.00 0.00 0.00 2.78
226 228 4.398044 ACAAAATGAACTGTCCGTGAAACT 59.602 37.500 0.00 0.00 31.75 2.66
227 229 5.587043 ACAAAATGAACTGTCCGTGAAACTA 59.413 36.000 0.00 0.00 31.75 2.24
228 230 6.262273 ACAAAATGAACTGTCCGTGAAACTAT 59.738 34.615 0.00 0.00 31.75 2.12
229 231 6.877611 AAATGAACTGTCCGTGAAACTATT 57.122 33.333 0.00 0.00 31.75 1.73
230 232 6.877611 AATGAACTGTCCGTGAAACTATTT 57.122 33.333 0.00 0.00 31.75 1.40
231 233 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
232 234 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
241 243 3.734463 TGAAACTATTTCACGTGGCTGA 58.266 40.909 17.00 0.00 44.21 4.26
242 244 3.496884 TGAAACTATTTCACGTGGCTGAC 59.503 43.478 17.00 0.00 44.21 3.51
243 245 2.094762 ACTATTTCACGTGGCTGACC 57.905 50.000 17.00 0.00 0.00 4.02
244 246 1.623811 ACTATTTCACGTGGCTGACCT 59.376 47.619 17.00 0.00 36.63 3.85
245 247 2.038557 ACTATTTCACGTGGCTGACCTT 59.961 45.455 17.00 0.00 36.63 3.50
246 248 1.981256 ATTTCACGTGGCTGACCTTT 58.019 45.000 17.00 0.00 36.63 3.11
247 249 1.757682 TTTCACGTGGCTGACCTTTT 58.242 45.000 17.00 0.00 36.63 2.27
248 250 1.757682 TTCACGTGGCTGACCTTTTT 58.242 45.000 17.00 0.00 36.63 1.94
249 251 1.021202 TCACGTGGCTGACCTTTTTG 58.979 50.000 17.00 0.00 36.63 2.44
250 252 0.738389 CACGTGGCTGACCTTTTTGT 59.262 50.000 7.95 0.00 36.63 2.83
251 253 0.738389 ACGTGGCTGACCTTTTTGTG 59.262 50.000 0.00 0.00 36.63 3.33
252 254 0.738389 CGTGGCTGACCTTTTTGTGT 59.262 50.000 0.00 0.00 36.63 3.72
253 255 1.533756 CGTGGCTGACCTTTTTGTGTG 60.534 52.381 0.00 0.00 36.63 3.82
254 256 1.748493 GTGGCTGACCTTTTTGTGTGA 59.252 47.619 0.00 0.00 36.63 3.58
255 257 1.748493 TGGCTGACCTTTTTGTGTGAC 59.252 47.619 0.00 0.00 36.63 3.67
256 258 1.268539 GGCTGACCTTTTTGTGTGACG 60.269 52.381 0.00 0.00 0.00 4.35
257 259 1.400494 GCTGACCTTTTTGTGTGACGT 59.600 47.619 0.00 0.00 0.00 4.34
258 260 2.538939 GCTGACCTTTTTGTGTGACGTC 60.539 50.000 9.11 9.11 0.00 4.34
259 261 2.011222 TGACCTTTTTGTGTGACGTCC 58.989 47.619 14.12 5.06 0.00 4.79
260 262 1.004292 GACCTTTTTGTGTGACGTCCG 60.004 52.381 14.12 0.00 0.00 4.79
261 263 1.292061 CCTTTTTGTGTGACGTCCGA 58.708 50.000 14.12 0.00 0.00 4.55
262 264 1.004292 CCTTTTTGTGTGACGTCCGAC 60.004 52.381 14.12 10.01 0.00 4.79
263 265 1.661617 CTTTTTGTGTGACGTCCGACA 59.338 47.619 14.12 12.64 0.00 4.35
264 266 1.000884 TTTTGTGTGACGTCCGACAC 58.999 50.000 24.68 24.68 42.40 3.67
268 270 2.966324 TGTGACGTCCGACACAAAG 58.034 52.632 19.38 0.00 44.68 2.77
269 271 0.528901 TGTGACGTCCGACACAAAGG 60.529 55.000 19.38 0.00 44.68 3.11
270 272 1.593209 TGACGTCCGACACAAAGGC 60.593 57.895 14.12 0.00 0.00 4.35
276 278 3.276091 CGACACAAAGGCGCCACA 61.276 61.111 31.54 0.00 45.03 4.17
277 279 2.331451 GACACAAAGGCGCCACAC 59.669 61.111 31.54 8.57 0.00 3.82
278 280 2.124320 ACACAAAGGCGCCACACT 60.124 55.556 31.54 4.11 0.00 3.55
279 281 0.882927 GACACAAAGGCGCCACACTA 60.883 55.000 31.54 0.00 0.00 2.74
280 282 1.164041 ACACAAAGGCGCCACACTAC 61.164 55.000 31.54 0.00 0.00 2.73
281 283 1.147376 ACAAAGGCGCCACACTACA 59.853 52.632 31.54 0.00 0.00 2.74
282 284 0.250727 ACAAAGGCGCCACACTACAT 60.251 50.000 31.54 0.76 0.00 2.29
283 285 0.447801 CAAAGGCGCCACACTACATC 59.552 55.000 31.54 0.00 0.00 3.06
284 286 1.019278 AAAGGCGCCACACTACATCG 61.019 55.000 31.54 0.00 0.00 3.84
285 287 2.125673 GGCGCCACACTACATCGT 60.126 61.111 24.80 0.00 0.00 3.73
286 288 2.452813 GGCGCCACACTACATCGTG 61.453 63.158 24.80 0.00 40.67 4.35
287 289 3.081133 CGCCACACTACATCGTGC 58.919 61.111 0.00 0.00 38.45 5.34
288 290 1.736282 CGCCACACTACATCGTGCA 60.736 57.895 0.00 0.00 38.45 4.57
289 291 1.288419 CGCCACACTACATCGTGCAA 61.288 55.000 0.00 0.00 38.45 4.08
290 292 0.165944 GCCACACTACATCGTGCAAC 59.834 55.000 0.00 0.00 38.45 4.17
301 303 3.972227 GTGCAACGCCTCACAGAT 58.028 55.556 0.00 0.00 33.63 2.90
302 304 3.137484 GTGCAACGCCTCACAGATA 57.863 52.632 0.00 0.00 33.63 1.98
303 305 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
304 306 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
310 312 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
311 313 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
312 314 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
314 316 0.100682 CACAGATAGGCGCTACACGT 59.899 55.000 7.64 0.00 46.11 4.49
321 323 4.735132 GCGCTACACGTCTGGCCA 62.735 66.667 4.71 4.71 46.11 5.36
322 324 2.507102 CGCTACACGTCTGGCCAG 60.507 66.667 27.87 27.87 36.87 4.85
323 325 2.815647 GCTACACGTCTGGCCAGC 60.816 66.667 28.91 20.95 0.00 4.85
324 326 2.507102 CTACACGTCTGGCCAGCG 60.507 66.667 33.47 33.47 35.30 5.18
325 327 3.282745 CTACACGTCTGGCCAGCGT 62.283 63.158 34.50 34.50 40.07 5.07
326 328 2.765250 CTACACGTCTGGCCAGCGTT 62.765 60.000 36.32 29.68 38.44 4.84
327 329 3.716006 CACGTCTGGCCAGCGTTG 61.716 66.667 36.32 28.98 38.44 4.10
330 332 4.030452 GTCTGGCCAGCGTTGCAC 62.030 66.667 28.91 15.92 0.00 4.57
336 338 4.641645 CCAGCGTTGCACCCCAGA 62.642 66.667 0.00 0.00 0.00 3.86
337 339 3.357079 CAGCGTTGCACCCCAGAC 61.357 66.667 0.00 0.00 0.00 3.51
338 340 3.560251 AGCGTTGCACCCCAGACT 61.560 61.111 0.00 0.00 0.00 3.24
339 341 3.357079 GCGTTGCACCCCAGACTG 61.357 66.667 0.00 0.00 0.00 3.51
340 342 3.357079 CGTTGCACCCCAGACTGC 61.357 66.667 0.00 0.00 0.00 4.40
341 343 2.985847 GTTGCACCCCAGACTGCC 60.986 66.667 0.00 0.00 31.97 4.85
342 344 4.284550 TTGCACCCCAGACTGCCC 62.285 66.667 0.00 0.00 31.97 5.36
344 346 4.284550 GCACCCCAGACTGCCCAA 62.285 66.667 0.00 0.00 0.00 4.12
345 347 2.520458 CACCCCAGACTGCCCAAA 59.480 61.111 0.00 0.00 0.00 3.28
346 348 1.152567 CACCCCAGACTGCCCAAAA 60.153 57.895 0.00 0.00 0.00 2.44
347 349 0.758685 CACCCCAGACTGCCCAAAAA 60.759 55.000 0.00 0.00 0.00 1.94
348 350 0.190815 ACCCCAGACTGCCCAAAAAT 59.809 50.000 0.00 0.00 0.00 1.82
349 351 1.351076 CCCCAGACTGCCCAAAAATT 58.649 50.000 0.00 0.00 0.00 1.82
350 352 1.002315 CCCCAGACTGCCCAAAAATTG 59.998 52.381 0.00 0.00 0.00 2.32
351 353 1.608801 CCCAGACTGCCCAAAAATTGC 60.609 52.381 0.00 0.00 0.00 3.56
352 354 1.345415 CCAGACTGCCCAAAAATTGCT 59.655 47.619 0.00 0.00 0.00 3.91
353 355 2.562298 CCAGACTGCCCAAAAATTGCTA 59.438 45.455 0.00 0.00 0.00 3.49
354 356 3.006752 CCAGACTGCCCAAAAATTGCTAA 59.993 43.478 0.00 0.00 0.00 3.09
355 357 4.240096 CAGACTGCCCAAAAATTGCTAAG 58.760 43.478 0.00 0.00 0.00 2.18
356 358 3.897505 AGACTGCCCAAAAATTGCTAAGT 59.102 39.130 0.00 0.00 0.00 2.24
357 359 4.021981 AGACTGCCCAAAAATTGCTAAGTC 60.022 41.667 0.00 0.00 34.53 3.01
358 360 3.640967 ACTGCCCAAAAATTGCTAAGTCA 59.359 39.130 0.00 0.00 0.00 3.41
359 361 4.284234 ACTGCCCAAAAATTGCTAAGTCAT 59.716 37.500 0.00 0.00 0.00 3.06
360 362 5.221702 ACTGCCCAAAAATTGCTAAGTCATT 60.222 36.000 0.00 0.00 0.00 2.57
361 363 6.014669 ACTGCCCAAAAATTGCTAAGTCATTA 60.015 34.615 0.00 0.00 0.00 1.90
362 364 6.945218 TGCCCAAAAATTGCTAAGTCATTAT 58.055 32.000 0.00 0.00 0.00 1.28
363 365 6.817641 TGCCCAAAAATTGCTAAGTCATTATG 59.182 34.615 0.00 0.00 0.00 1.90
364 366 6.238184 GCCCAAAAATTGCTAAGTCATTATGC 60.238 38.462 0.00 0.00 0.00 3.14
365 367 6.817641 CCCAAAAATTGCTAAGTCATTATGCA 59.182 34.615 0.00 0.00 0.00 3.96
366 368 7.010738 CCCAAAAATTGCTAAGTCATTATGCAG 59.989 37.037 0.00 0.00 35.02 4.41
367 369 7.760794 CCAAAAATTGCTAAGTCATTATGCAGA 59.239 33.333 0.00 0.00 35.02 4.26
368 370 8.804743 CAAAAATTGCTAAGTCATTATGCAGAG 58.195 33.333 0.00 0.00 35.02 3.35
369 371 5.686159 ATTGCTAAGTCATTATGCAGAGC 57.314 39.130 0.00 0.00 35.02 4.09
370 372 3.470709 TGCTAAGTCATTATGCAGAGCC 58.529 45.455 0.00 0.00 0.00 4.70
371 373 3.135348 TGCTAAGTCATTATGCAGAGCCT 59.865 43.478 0.00 0.00 0.00 4.58
372 374 4.344968 TGCTAAGTCATTATGCAGAGCCTA 59.655 41.667 0.00 0.00 0.00 3.93
373 375 5.163311 TGCTAAGTCATTATGCAGAGCCTAA 60.163 40.000 0.00 0.00 0.00 2.69
374 376 5.407995 GCTAAGTCATTATGCAGAGCCTAAG 59.592 44.000 0.00 0.00 0.00 2.18
375 377 5.620738 AAGTCATTATGCAGAGCCTAAGA 57.379 39.130 0.00 0.00 0.00 2.10
376 378 5.212532 AGTCATTATGCAGAGCCTAAGAG 57.787 43.478 0.00 0.00 0.00 2.85
377 379 3.745458 GTCATTATGCAGAGCCTAAGAGC 59.255 47.826 0.00 0.00 0.00 4.09
379 381 4.835056 TCATTATGCAGAGCCTAAGAGCTA 59.165 41.667 0.00 0.00 45.15 3.32
380 382 4.862902 TTATGCAGAGCCTAAGAGCTAG 57.137 45.455 0.00 0.00 45.15 3.42
393 395 2.202810 GCTAGGCGCTCCACTGAC 60.203 66.667 7.64 0.00 35.14 3.51
394 396 2.103143 CTAGGCGCTCCACTGACG 59.897 66.667 7.64 0.00 33.74 4.35
398 400 4.129737 GCGCTCCACTGACGCCTA 62.130 66.667 0.00 0.00 46.63 3.93
399 401 2.103143 CGCTCCACTGACGCCTAG 59.897 66.667 0.00 0.00 0.00 3.02
400 402 2.202810 GCTCCACTGACGCCTAGC 60.203 66.667 0.00 0.00 0.00 3.42
401 403 2.716017 GCTCCACTGACGCCTAGCT 61.716 63.158 0.00 0.00 0.00 3.32
402 404 1.435515 CTCCACTGACGCCTAGCTC 59.564 63.158 0.00 0.00 0.00 4.09
403 405 1.000771 TCCACTGACGCCTAGCTCT 60.001 57.895 0.00 0.00 0.00 4.09
404 406 1.032657 TCCACTGACGCCTAGCTCTC 61.033 60.000 0.00 0.00 0.00 3.20
405 407 1.315981 CCACTGACGCCTAGCTCTCA 61.316 60.000 0.00 0.00 0.00 3.27
406 408 0.100325 CACTGACGCCTAGCTCTCAG 59.900 60.000 0.00 8.71 37.18 3.35
407 409 1.034838 ACTGACGCCTAGCTCTCAGG 61.035 60.000 12.87 0.00 36.18 3.86
412 414 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
413 415 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
414 416 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
415 417 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
417 419 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
418 420 3.586461 CTCTCAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
419 421 3.420606 CTCAGGCGCTGCACACTG 61.421 66.667 7.64 4.89 0.00 3.66
420 422 3.871248 CTCAGGCGCTGCACACTGA 62.871 63.158 7.64 9.54 37.61 3.41
421 423 3.720193 CAGGCGCTGCACACTGAC 61.720 66.667 7.64 0.00 32.86 3.51
422 424 3.933722 AGGCGCTGCACACTGACT 61.934 61.111 7.64 0.00 0.00 3.41
423 425 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
424 426 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
425 427 1.227999 GGCGCTGCACACTGACTTAA 61.228 55.000 7.64 0.00 0.00 1.85
426 428 0.798776 GCGCTGCACACTGACTTAAT 59.201 50.000 0.00 0.00 0.00 1.40
427 429 1.999735 GCGCTGCACACTGACTTAATA 59.000 47.619 0.00 0.00 0.00 0.98
428 430 2.415168 GCGCTGCACACTGACTTAATAA 59.585 45.455 0.00 0.00 0.00 1.40
429 431 3.063997 GCGCTGCACACTGACTTAATAAT 59.936 43.478 0.00 0.00 0.00 1.28
430 432 4.437390 GCGCTGCACACTGACTTAATAATT 60.437 41.667 0.00 0.00 0.00 1.40
431 433 5.631026 CGCTGCACACTGACTTAATAATTT 58.369 37.500 0.00 0.00 0.00 1.82
432 434 6.086222 CGCTGCACACTGACTTAATAATTTT 58.914 36.000 0.00 0.00 0.00 1.82
433 435 6.249260 CGCTGCACACTGACTTAATAATTTTC 59.751 38.462 0.00 0.00 0.00 2.29
434 436 6.249260 GCTGCACACTGACTTAATAATTTTCG 59.751 38.462 0.00 0.00 0.00 3.46
435 437 6.607689 TGCACACTGACTTAATAATTTTCGG 58.392 36.000 0.00 0.00 0.00 4.30
436 438 6.428465 TGCACACTGACTTAATAATTTTCGGA 59.572 34.615 0.00 0.00 0.00 4.55
437 439 7.120579 TGCACACTGACTTAATAATTTTCGGAT 59.879 33.333 0.00 0.00 0.00 4.18
438 440 7.640240 GCACACTGACTTAATAATTTTCGGATC 59.360 37.037 0.00 0.00 0.00 3.36
439 441 8.664798 CACACTGACTTAATAATTTTCGGATCA 58.335 33.333 0.00 0.00 0.00 2.92
440 442 8.665685 ACACTGACTTAATAATTTTCGGATCAC 58.334 33.333 0.00 0.00 0.00 3.06
441 443 8.664798 CACTGACTTAATAATTTTCGGATCACA 58.335 33.333 0.00 0.00 0.00 3.58
442 444 8.665685 ACTGACTTAATAATTTTCGGATCACAC 58.334 33.333 0.00 0.00 0.00 3.82
443 445 7.981142 TGACTTAATAATTTTCGGATCACACC 58.019 34.615 0.00 0.00 0.00 4.16
451 453 2.813908 GGATCACACCGGTGCGAC 60.814 66.667 34.26 21.97 44.87 5.19
452 454 2.261671 GATCACACCGGTGCGACT 59.738 61.111 34.26 18.93 44.87 4.18
453 455 1.805945 GATCACACCGGTGCGACTC 60.806 63.158 34.26 22.50 44.87 3.36
454 456 2.214181 GATCACACCGGTGCGACTCT 62.214 60.000 34.26 15.70 44.87 3.24
455 457 2.492449 ATCACACCGGTGCGACTCTG 62.492 60.000 34.26 22.74 44.87 3.35
456 458 3.991051 ACACCGGTGCGACTCTGG 61.991 66.667 34.26 7.95 37.36 3.86
457 459 3.680786 CACCGGTGCGACTCTGGA 61.681 66.667 24.02 0.00 35.49 3.86
458 460 3.681835 ACCGGTGCGACTCTGGAC 61.682 66.667 6.12 0.00 35.49 4.02
459 461 3.680786 CCGGTGCGACTCTGGACA 61.681 66.667 0.00 0.00 33.49 4.02
460 462 2.126307 CGGTGCGACTCTGGACAG 60.126 66.667 0.00 0.00 30.91 3.51
461 463 2.262915 GGTGCGACTCTGGACAGG 59.737 66.667 0.00 0.00 30.91 4.00
462 464 2.433318 GTGCGACTCTGGACAGGC 60.433 66.667 0.00 0.00 0.00 4.85
463 465 4.056125 TGCGACTCTGGACAGGCG 62.056 66.667 0.00 3.16 0.00 5.52
464 466 4.057428 GCGACTCTGGACAGGCGT 62.057 66.667 0.00 0.00 0.00 5.68
465 467 2.126307 CGACTCTGGACAGGCGTG 60.126 66.667 4.53 4.53 0.00 5.34
466 468 2.920645 CGACTCTGGACAGGCGTGT 61.921 63.158 12.68 12.68 40.71 4.49
467 469 1.583495 CGACTCTGGACAGGCGTGTA 61.583 60.000 12.81 0.00 36.88 2.90
468 470 0.601558 GACTCTGGACAGGCGTGTAA 59.398 55.000 12.81 3.15 36.88 2.41
469 471 0.317479 ACTCTGGACAGGCGTGTAAC 59.683 55.000 12.81 9.24 36.88 2.50
484 486 3.436496 GTGTAACGTCTATCTGTGAGGC 58.564 50.000 0.00 0.00 0.00 4.70
488 490 1.550065 CGTCTATCTGTGAGGCGTTG 58.450 55.000 0.00 0.00 37.26 4.10
489 491 1.281899 GTCTATCTGTGAGGCGTTGC 58.718 55.000 0.00 0.00 0.00 4.17
490 492 0.894835 TCTATCTGTGAGGCGTTGCA 59.105 50.000 0.00 0.00 0.00 4.08
491 493 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
492 494 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
493 495 0.534877 ATCTGTGAGGCGTTGCACAA 60.535 50.000 0.00 0.00 43.65 3.33
494 496 0.534877 TCTGTGAGGCGTTGCACAAT 60.535 50.000 0.00 0.00 43.65 2.71
495 497 0.386352 CTGTGAGGCGTTGCACAATG 60.386 55.000 0.00 0.00 43.65 2.82
496 498 1.100463 TGTGAGGCGTTGCACAATGT 61.100 50.000 4.63 0.00 41.61 2.71
497 499 0.871722 GTGAGGCGTTGCACAATGTA 59.128 50.000 4.63 0.00 35.19 2.29
498 500 1.135972 GTGAGGCGTTGCACAATGTAG 60.136 52.381 4.63 0.00 35.19 2.74
499 501 1.156736 GAGGCGTTGCACAATGTAGT 58.843 50.000 4.63 0.00 0.00 2.73
500 502 0.874390 AGGCGTTGCACAATGTAGTG 59.126 50.000 4.63 0.00 42.37 2.74
501 503 0.591170 GGCGTTGCACAATGTAGTGT 59.409 50.000 4.63 0.00 41.52 3.55
507 509 1.501741 CACAATGTAGTGTGGCGCC 59.498 57.895 22.73 22.73 44.29 6.53
508 510 0.955428 CACAATGTAGTGTGGCGCCT 60.955 55.000 29.70 9.99 44.29 5.52
509 511 0.250727 ACAATGTAGTGTGGCGCCTT 60.251 50.000 29.70 13.03 0.00 4.35
510 512 0.447801 CAATGTAGTGTGGCGCCTTC 59.552 55.000 29.70 20.58 0.00 3.46
511 513 0.036164 AATGTAGTGTGGCGCCTTCA 59.964 50.000 29.70 22.99 0.00 3.02
512 514 0.253044 ATGTAGTGTGGCGCCTTCAT 59.747 50.000 29.70 17.99 0.00 2.57
513 515 0.673333 TGTAGTGTGGCGCCTTCATG 60.673 55.000 29.70 0.00 0.00 3.07
514 516 0.673644 GTAGTGTGGCGCCTTCATGT 60.674 55.000 29.70 18.43 0.00 3.21
515 517 0.391130 TAGTGTGGCGCCTTCATGTC 60.391 55.000 29.70 14.26 0.00 3.06
516 518 2.741985 TGTGGCGCCTTCATGTCG 60.742 61.111 29.70 0.00 0.00 4.35
517 519 3.499737 GTGGCGCCTTCATGTCGG 61.500 66.667 29.70 0.00 0.00 4.79
518 520 4.776322 TGGCGCCTTCATGTCGGG 62.776 66.667 29.70 0.00 0.00 5.14
522 524 3.195698 GCCTTCATGTCGGGCGTC 61.196 66.667 9.64 0.00 36.37 5.19
523 525 2.264480 CCTTCATGTCGGGCGTCA 59.736 61.111 0.00 0.00 0.00 4.35
524 526 2.100631 CCTTCATGTCGGGCGTCAC 61.101 63.158 0.00 0.00 0.00 3.67
525 527 1.374125 CTTCATGTCGGGCGTCACA 60.374 57.895 0.00 0.00 0.00 3.58
526 528 0.740868 CTTCATGTCGGGCGTCACAT 60.741 55.000 0.00 0.00 33.29 3.21
527 529 0.533032 TTCATGTCGGGCGTCACATA 59.467 50.000 0.00 0.00 31.78 2.29
528 530 0.533032 TCATGTCGGGCGTCACATAA 59.467 50.000 0.00 0.00 31.78 1.90
529 531 1.066787 TCATGTCGGGCGTCACATAAA 60.067 47.619 0.00 0.00 31.78 1.40
530 532 1.735018 CATGTCGGGCGTCACATAAAA 59.265 47.619 0.00 0.00 31.78 1.52
531 533 1.880271 TGTCGGGCGTCACATAAAAA 58.120 45.000 0.00 0.00 0.00 1.94
532 534 1.801771 TGTCGGGCGTCACATAAAAAG 59.198 47.619 0.00 0.00 0.00 2.27
533 535 2.070783 GTCGGGCGTCACATAAAAAGA 58.929 47.619 0.00 0.00 0.00 2.52
534 536 2.676342 GTCGGGCGTCACATAAAAAGAT 59.324 45.455 0.00 0.00 0.00 2.40
535 537 2.933906 TCGGGCGTCACATAAAAAGATC 59.066 45.455 0.00 0.00 0.00 2.75
536 538 2.675844 CGGGCGTCACATAAAAAGATCA 59.324 45.455 0.00 0.00 0.00 2.92
537 539 3.242413 CGGGCGTCACATAAAAAGATCAG 60.242 47.826 0.00 0.00 0.00 2.90
538 540 3.487544 GGGCGTCACATAAAAAGATCAGC 60.488 47.826 0.00 0.00 0.00 4.26
539 541 3.487544 GGCGTCACATAAAAAGATCAGCC 60.488 47.826 0.00 0.00 0.00 4.85
540 542 3.785505 GCGTCACATAAAAAGATCAGCCG 60.786 47.826 0.00 0.00 0.00 5.52
541 543 3.685058 GTCACATAAAAAGATCAGCCGC 58.315 45.455 0.00 0.00 0.00 6.53
542 544 2.351418 TCACATAAAAAGATCAGCCGCG 59.649 45.455 0.00 0.00 0.00 6.46
543 545 2.095853 CACATAAAAAGATCAGCCGCGT 59.904 45.455 4.92 0.00 0.00 6.01
544 546 2.095853 ACATAAAAAGATCAGCCGCGTG 59.904 45.455 4.92 0.00 0.00 5.34
545 547 2.087501 TAAAAAGATCAGCCGCGTGA 57.912 45.000 4.92 3.05 0.00 4.35
546 548 1.234821 AAAAAGATCAGCCGCGTGAA 58.765 45.000 4.92 0.00 0.00 3.18
547 549 1.234821 AAAAGATCAGCCGCGTGAAA 58.765 45.000 4.92 0.00 0.00 2.69
548 550 1.453155 AAAGATCAGCCGCGTGAAAT 58.547 45.000 4.92 0.00 0.00 2.17
549 551 2.309528 AAGATCAGCCGCGTGAAATA 57.690 45.000 4.92 0.00 0.00 1.40
550 552 2.309528 AGATCAGCCGCGTGAAATAA 57.690 45.000 4.92 0.00 0.00 1.40
551 553 2.838736 AGATCAGCCGCGTGAAATAAT 58.161 42.857 4.92 0.00 0.00 1.28
552 554 3.206150 AGATCAGCCGCGTGAAATAATT 58.794 40.909 4.92 0.00 0.00 1.40
553 555 3.627577 AGATCAGCCGCGTGAAATAATTT 59.372 39.130 4.92 0.00 0.00 1.82
554 556 3.398954 TCAGCCGCGTGAAATAATTTC 57.601 42.857 4.92 0.00 40.08 2.17
555 557 2.744741 TCAGCCGCGTGAAATAATTTCA 59.255 40.909 4.92 0.00 46.68 2.69
565 567 5.054390 TGAAATAATTTCACGGGCAGTTC 57.946 39.130 0.00 0.00 44.21 3.01
566 568 4.520874 TGAAATAATTTCACGGGCAGTTCA 59.479 37.500 0.00 0.00 44.21 3.18
567 569 5.184864 TGAAATAATTTCACGGGCAGTTCAT 59.815 36.000 0.00 0.00 44.21 2.57
568 570 5.659440 AATAATTTCACGGGCAGTTCATT 57.341 34.783 0.00 0.00 0.00 2.57
569 571 3.575965 AATTTCACGGGCAGTTCATTC 57.424 42.857 0.00 0.00 0.00 2.67
570 572 2.270352 TTTCACGGGCAGTTCATTCT 57.730 45.000 0.00 0.00 0.00 2.40
571 573 1.522668 TTCACGGGCAGTTCATTCTG 58.477 50.000 0.00 0.00 38.35 3.02
572 574 0.396435 TCACGGGCAGTTCATTCTGT 59.604 50.000 0.00 0.00 37.70 3.41
573 575 0.518636 CACGGGCAGTTCATTCTGTG 59.481 55.000 0.00 0.00 37.70 3.66
574 576 0.396435 ACGGGCAGTTCATTCTGTGA 59.604 50.000 0.00 0.00 37.70 3.58
575 577 1.003580 ACGGGCAGTTCATTCTGTGAT 59.996 47.619 0.00 0.00 36.54 3.06
576 578 2.086869 CGGGCAGTTCATTCTGTGATT 58.913 47.619 0.00 0.00 36.54 2.57
577 579 2.489329 CGGGCAGTTCATTCTGTGATTT 59.511 45.455 0.00 0.00 36.54 2.17
578 580 3.671433 CGGGCAGTTCATTCTGTGATTTG 60.671 47.826 0.00 0.00 36.54 2.32
579 581 3.248266 GGCAGTTCATTCTGTGATTTGC 58.752 45.455 0.00 6.01 41.81 3.68
580 582 2.912967 GCAGTTCATTCTGTGATTTGCG 59.087 45.455 0.00 0.00 37.05 4.85
581 583 3.365264 GCAGTTCATTCTGTGATTTGCGA 60.365 43.478 0.00 0.00 37.05 5.10
582 584 4.400845 CAGTTCATTCTGTGATTTGCGAG 58.599 43.478 0.00 0.00 36.54 5.03
600 602 0.624785 AGAGTCTACTAGTGGCGGGT 59.375 55.000 5.39 0.00 0.00 5.28
669 671 2.813908 CACGCCGCTCCTGGTTAC 60.814 66.667 0.00 0.00 0.00 2.50
689 691 0.892755 GGGACGTCACTGACATGGTA 59.107 55.000 18.91 0.00 32.09 3.25
696 698 2.563179 GTCACTGACATGGTAGACCTGT 59.437 50.000 4.17 2.24 32.83 4.00
980 1082 1.042229 ACTACTTGTACCGCACCACA 58.958 50.000 0.00 0.00 0.00 4.17
1046 1150 6.936900 GCTGTACATCTCTCTCTTATCTCTCT 59.063 42.308 0.00 0.00 0.00 3.10
1054 1158 9.699410 ATCTCTCTCTTATCTCTCTCAGAAAAA 57.301 33.333 0.00 0.00 33.62 1.94
1196 1310 2.430610 GGGCTGGATCTGACGAGCT 61.431 63.158 11.57 0.00 40.49 4.09
1206 1320 3.414700 GACGAGCTGCGGTGTTGG 61.415 66.667 0.00 0.00 46.49 3.77
1249 1369 1.473278 CGCCGTCTCTACCTTCTTTCT 59.527 52.381 0.00 0.00 0.00 2.52
1254 1374 4.440387 CCGTCTCTACCTTCTTTCTTAGCC 60.440 50.000 0.00 0.00 0.00 3.93
1264 1384 5.474876 CCTTCTTTCTTAGCCTGTTCATGTT 59.525 40.000 0.00 0.00 0.00 2.71
1268 1388 6.428159 TCTTTCTTAGCCTGTTCATGTTTCTC 59.572 38.462 0.00 0.00 0.00 2.87
1318 1447 2.567169 TCTGATGATTTGTGTCGGTCCT 59.433 45.455 0.00 0.00 0.00 3.85
1320 1449 3.857052 TGATGATTTGTGTCGGTCCTAC 58.143 45.455 0.00 0.00 0.00 3.18
1460 1590 1.336795 GCTTTGATCCGGGGTGTTTTG 60.337 52.381 0.00 0.00 0.00 2.44
1508 1638 3.202706 GATTGGGCCGGCGACTTC 61.203 66.667 22.54 11.31 0.00 3.01
1549 1679 3.856309 TCACTGTGGCTCGTGACT 58.144 55.556 8.11 0.00 35.40 3.41
2006 2147 2.624316 TTCGCACGAACGAATAGTCT 57.376 45.000 12.01 0.00 46.39 3.24
2215 2359 5.953571 ACTCCTGTTTGATATTATTCCCCC 58.046 41.667 0.00 0.00 0.00 5.40
2267 2418 8.611654 TTATTGTCCTTAGGTAAAGTTGTGAC 57.388 34.615 0.00 0.00 32.89 3.67
2676 2828 7.039223 CGGTTCCTTGGGTCAGTATATAGTAAT 60.039 40.741 0.00 0.00 0.00 1.89
2714 2866 5.769662 TCTCATGTATGCACCATTAAATCCC 59.230 40.000 0.00 0.00 0.00 3.85
2716 2868 5.769662 TCATGTATGCACCATTAAATCCCTC 59.230 40.000 0.00 0.00 0.00 4.30
2782 2934 9.760660 GAGTTCTACTAGCACACATTTTTAATG 57.239 33.333 0.00 0.00 0.00 1.90
2885 3037 1.885049 AGATCCTGGAGCTGGCTTAA 58.115 50.000 14.71 0.00 0.00 1.85
2888 3040 0.035056 TCCTGGAGCTGGCTTAAAGC 60.035 55.000 0.00 0.00 41.46 3.51
2969 3122 0.176910 TTTACTGCCGATCCGATGCA 59.823 50.000 0.00 0.00 0.00 3.96
3053 3206 6.989169 GCCATACAAGAACTCTTCTATGTGAT 59.011 38.462 11.47 0.00 39.61 3.06
3074 3227 1.895707 GTGTGCTTCACAGCCTGCT 60.896 57.895 0.00 0.00 45.43 4.24
3404 3557 6.591935 AGACAAACAAAAGTCTGTGATAGGA 58.408 36.000 0.00 0.00 43.09 2.94
3505 3658 5.886960 AAGGTGCAATAAGATTCTCACAC 57.113 39.130 0.00 0.00 0.00 3.82
3828 4566 4.095334 TGAATCTTGATTCTTGCCATGTCG 59.905 41.667 19.91 0.00 0.00 4.35
3954 4692 7.889873 TTTTCAGAAACAAATTAGGGTGAGA 57.110 32.000 0.00 0.00 0.00 3.27
4184 4931 8.896744 GGGTAAATAGGTAACCATGTAAAGTTC 58.103 37.037 0.00 0.00 34.83 3.01
4195 4950 5.882557 ACCATGTAAAGTTCTAGCCATTCAG 59.117 40.000 0.00 0.00 0.00 3.02
4244 4999 2.052782 TAGCGGACTGTGAGCATCTA 57.947 50.000 6.81 0.00 34.92 1.98
4328 5138 6.266103 GGATCTTCCCTCATTTGCATTTGATA 59.734 38.462 0.00 0.00 0.00 2.15
4446 5262 8.761575 AATTTTTCACTAATGTGTGCTTATGG 57.238 30.769 0.00 0.00 44.14 2.74
4622 5438 5.181690 TGGCATTGACAGTTACTTTGAAC 57.818 39.130 0.00 0.00 0.00 3.18
4623 5439 4.037446 TGGCATTGACAGTTACTTTGAACC 59.963 41.667 0.00 0.00 0.00 3.62
4627 5443 7.422399 GCATTGACAGTTACTTTGAACCTAAA 58.578 34.615 0.00 0.00 0.00 1.85
4792 5608 6.265196 TCACCTTGCTCTGATGTTAATTTTGT 59.735 34.615 0.00 0.00 0.00 2.83
4822 5638 5.478332 TCCGATGCAGACATACTTGAGATAT 59.522 40.000 0.00 0.00 36.35 1.63
4823 5639 6.659242 TCCGATGCAGACATACTTGAGATATA 59.341 38.462 0.00 0.00 36.35 0.86
4824 5640 6.971756 CCGATGCAGACATACTTGAGATATAG 59.028 42.308 0.00 0.00 36.35 1.31
4825 5641 6.971756 CGATGCAGACATACTTGAGATATAGG 59.028 42.308 0.00 0.00 36.35 2.57
4826 5642 7.148171 CGATGCAGACATACTTGAGATATAGGA 60.148 40.741 0.00 0.00 36.35 2.94
4827 5643 7.459795 TGCAGACATACTTGAGATATAGGAG 57.540 40.000 0.00 0.00 0.00 3.69
4930 5746 8.523523 TTACAATCATTGTTGAGAAAAGCATG 57.476 30.769 8.69 0.00 42.22 4.06
5217 6037 5.189180 AGCATTCCTGAAGAATACCAAGAC 58.811 41.667 0.00 0.00 43.63 3.01
5392 6213 4.898861 TGTGCCTTTTTATTTCTGGAAGGT 59.101 37.500 0.00 0.00 39.21 3.50
5850 6674 7.671495 AGATTTGAAAGTTGTGCAAGTTTTT 57.329 28.000 16.02 4.59 42.23 1.94
5856 6680 2.094752 AGTTGTGCAAGTTTTTGACGCT 60.095 40.909 0.00 0.00 36.36 5.07
5865 6689 2.357952 AGTTTTTGACGCTGTTTCTCCC 59.642 45.455 0.00 0.00 0.00 4.30
5894 6718 0.039074 GTACAGCGGATGGATCTCGG 60.039 60.000 0.00 0.00 0.00 4.63
5909 6733 4.443598 GGATCTCGGGTCTTCTATTGCTTT 60.444 45.833 0.00 0.00 0.00 3.51
5961 6785 4.744570 CAACTAGATGGACTTTCTGCGTA 58.255 43.478 0.00 0.00 0.00 4.42
5981 6806 5.733937 GCGTATTTCTCCCTTCTACTGACTC 60.734 48.000 0.00 0.00 0.00 3.36
6199 7032 1.111277 GTTTCAAGCTGGTGGTGGTT 58.889 50.000 0.00 0.00 0.00 3.67
6222 7055 0.451783 GAGCCCATGTAAACTTGCCG 59.548 55.000 0.00 0.00 0.00 5.69
6274 7107 2.826725 AGGAAACCTTCAGACCTACTCG 59.173 50.000 0.00 0.00 0.00 4.18
6656 7567 7.837689 GGTATAAAGGTTCTACCCCTTCAATTT 59.162 37.037 0.00 0.00 41.47 1.82
6657 7568 9.251440 GTATAAAGGTTCTACCCCTTCAATTTT 57.749 33.333 0.00 0.00 41.47 1.82
6681 7592 6.764379 TGTTTACCCCATCAATTTTCCTTTC 58.236 36.000 0.00 0.00 0.00 2.62
6687 7598 5.163652 CCCCATCAATTTTCCTTTCGAGTAC 60.164 44.000 0.00 0.00 0.00 2.73
6750 7661 3.443045 CCATGGACACTTGCCGGC 61.443 66.667 22.73 22.73 0.00 6.13
6757 7668 4.688419 CACTTGCCGGCGCTTGTG 62.688 66.667 23.90 21.78 34.48 3.33
6826 8046 3.188667 CGCCCTTCTTTTAGTTCTCCAAC 59.811 47.826 0.00 0.00 0.00 3.77
6829 8049 4.386711 CCTTCTTTTAGTTCTCCAACCGT 58.613 43.478 0.00 0.00 32.22 4.83
6880 8100 1.223187 TCCTCGCCGAAACTCAAAAC 58.777 50.000 0.00 0.00 0.00 2.43
6892 8112 4.942761 AACTCAAAACTGGTCAATGCAT 57.057 36.364 0.00 0.00 0.00 3.96
6893 8113 4.510038 ACTCAAAACTGGTCAATGCATC 57.490 40.909 0.00 0.00 0.00 3.91
6903 8123 2.681848 GGTCAATGCATCACCAGAAGAG 59.318 50.000 18.76 0.00 0.00 2.85
6917 8137 4.478206 CAGAAGAGGCTTTCTGGTGATA 57.522 45.455 21.58 0.00 46.55 2.15
6943 8163 7.681782 ACATATATGTATGTGCACCAGCAAAAC 60.682 37.037 16.85 2.65 46.95 2.43
6978 8198 2.385803 TGGCTCCTAGTTAGCTGGTAC 58.614 52.381 12.56 0.00 39.97 3.34
7038 8258 4.150897 AGTAGGATGCGAAAAATGGCTA 57.849 40.909 0.00 0.00 0.00 3.93
7138 8358 4.690748 TCTTGCGTGATCTTCTTTCGATTT 59.309 37.500 0.00 0.00 0.00 2.17
7247 8467 6.826231 TCGAATATGGAGCTGTGGAAATTAAA 59.174 34.615 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 110 4.394712 CACACCGTGGGAGGAGGC 62.395 72.222 3.03 0.00 34.73 4.70
156 158 7.910441 AAATTTATCAAATTTGCCCTCACTG 57.090 32.000 13.54 0.00 46.30 3.66
167 169 6.350949 CGTCCCCAGGTCAAATTTATCAAATT 60.351 38.462 0.00 0.00 42.62 1.82
168 170 5.127031 CGTCCCCAGGTCAAATTTATCAAAT 59.873 40.000 0.00 0.00 0.00 2.32
169 171 4.461081 CGTCCCCAGGTCAAATTTATCAAA 59.539 41.667 0.00 0.00 0.00 2.69
170 172 4.013728 CGTCCCCAGGTCAAATTTATCAA 58.986 43.478 0.00 0.00 0.00 2.57
171 173 3.264706 TCGTCCCCAGGTCAAATTTATCA 59.735 43.478 0.00 0.00 0.00 2.15
172 174 3.881220 TCGTCCCCAGGTCAAATTTATC 58.119 45.455 0.00 0.00 0.00 1.75
173 175 4.310022 TTCGTCCCCAGGTCAAATTTAT 57.690 40.909 0.00 0.00 0.00 1.40
174 176 3.791953 TTCGTCCCCAGGTCAAATTTA 57.208 42.857 0.00 0.00 0.00 1.40
175 177 2.668144 TTCGTCCCCAGGTCAAATTT 57.332 45.000 0.00 0.00 0.00 1.82
176 178 2.668144 TTTCGTCCCCAGGTCAAATT 57.332 45.000 0.00 0.00 0.00 1.82
177 179 2.041081 TGATTTCGTCCCCAGGTCAAAT 59.959 45.455 0.00 0.00 0.00 2.32
178 180 1.422024 TGATTTCGTCCCCAGGTCAAA 59.578 47.619 0.00 0.00 0.00 2.69
179 181 1.060729 TGATTTCGTCCCCAGGTCAA 58.939 50.000 0.00 0.00 0.00 3.18
180 182 1.060729 TTGATTTCGTCCCCAGGTCA 58.939 50.000 0.00 0.00 0.00 4.02
181 183 2.194201 TTTGATTTCGTCCCCAGGTC 57.806 50.000 0.00 0.00 0.00 3.85
182 184 2.041081 TGATTTGATTTCGTCCCCAGGT 59.959 45.455 0.00 0.00 0.00 4.00
183 185 2.423538 GTGATTTGATTTCGTCCCCAGG 59.576 50.000 0.00 0.00 0.00 4.45
184 186 3.081061 TGTGATTTGATTTCGTCCCCAG 58.919 45.455 0.00 0.00 0.00 4.45
185 187 3.147553 TGTGATTTGATTTCGTCCCCA 57.852 42.857 0.00 0.00 0.00 4.96
186 188 4.513198 TTTGTGATTTGATTTCGTCCCC 57.487 40.909 0.00 0.00 0.00 4.81
187 189 6.155827 TCATTTTGTGATTTGATTTCGTCCC 58.844 36.000 0.00 0.00 0.00 4.46
188 190 7.382218 AGTTCATTTTGTGATTTGATTTCGTCC 59.618 33.333 0.00 0.00 36.54 4.79
189 191 8.209869 CAGTTCATTTTGTGATTTGATTTCGTC 58.790 33.333 0.00 0.00 36.54 4.20
190 192 7.706179 ACAGTTCATTTTGTGATTTGATTTCGT 59.294 29.630 0.00 0.00 36.54 3.85
191 193 8.064447 ACAGTTCATTTTGTGATTTGATTTCG 57.936 30.769 0.00 0.00 36.54 3.46
192 194 8.490355 GGACAGTTCATTTTGTGATTTGATTTC 58.510 33.333 0.00 0.00 36.54 2.17
193 195 7.169645 CGGACAGTTCATTTTGTGATTTGATTT 59.830 33.333 0.00 0.00 36.54 2.17
194 196 6.642131 CGGACAGTTCATTTTGTGATTTGATT 59.358 34.615 0.00 0.00 36.54 2.57
195 197 6.151691 CGGACAGTTCATTTTGTGATTTGAT 58.848 36.000 0.00 0.00 36.54 2.57
196 198 5.067153 ACGGACAGTTCATTTTGTGATTTGA 59.933 36.000 0.00 0.00 36.54 2.69
197 199 5.173673 CACGGACAGTTCATTTTGTGATTTG 59.826 40.000 0.00 0.00 36.54 2.32
198 200 5.067153 TCACGGACAGTTCATTTTGTGATTT 59.933 36.000 0.00 0.00 36.54 2.17
199 201 4.578516 TCACGGACAGTTCATTTTGTGATT 59.421 37.500 0.00 0.00 36.54 2.57
200 202 4.133820 TCACGGACAGTTCATTTTGTGAT 58.866 39.130 0.00 0.00 36.54 3.06
201 203 3.536570 TCACGGACAGTTCATTTTGTGA 58.463 40.909 0.00 0.00 33.14 3.58
202 204 3.961477 TCACGGACAGTTCATTTTGTG 57.039 42.857 0.00 0.00 0.00 3.33
203 205 4.398044 AGTTTCACGGACAGTTCATTTTGT 59.602 37.500 0.00 0.00 0.00 2.83
204 206 4.920376 AGTTTCACGGACAGTTCATTTTG 58.080 39.130 0.00 0.00 0.00 2.44
205 207 6.877611 ATAGTTTCACGGACAGTTCATTTT 57.122 33.333 0.00 0.00 0.00 1.82
206 208 6.877611 AATAGTTTCACGGACAGTTCATTT 57.122 33.333 0.00 0.00 0.00 2.32
207 209 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
208 210 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
209 211 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
210 212 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
220 222 3.496884 GTCAGCCACGTGAAATAGTTTCA 59.503 43.478 19.30 1.24 46.68 2.69
221 223 3.120304 GGTCAGCCACGTGAAATAGTTTC 60.120 47.826 19.30 0.00 36.07 2.78
222 224 2.812011 GGTCAGCCACGTGAAATAGTTT 59.188 45.455 19.30 0.00 34.09 2.66
223 225 2.038557 AGGTCAGCCACGTGAAATAGTT 59.961 45.455 19.30 0.00 37.19 2.24
224 226 1.623811 AGGTCAGCCACGTGAAATAGT 59.376 47.619 19.30 0.00 37.19 2.12
225 227 2.386661 AGGTCAGCCACGTGAAATAG 57.613 50.000 19.30 0.00 37.19 1.73
226 228 2.851263 AAGGTCAGCCACGTGAAATA 57.149 45.000 19.30 0.00 37.19 1.40
227 229 1.981256 AAAGGTCAGCCACGTGAAAT 58.019 45.000 19.30 0.00 37.19 2.17
228 230 1.757682 AAAAGGTCAGCCACGTGAAA 58.242 45.000 19.30 0.00 37.19 2.69
229 231 1.403679 CAAAAAGGTCAGCCACGTGAA 59.596 47.619 19.30 0.00 37.19 3.18
230 232 1.021202 CAAAAAGGTCAGCCACGTGA 58.979 50.000 19.30 0.00 37.19 4.35
231 233 0.738389 ACAAAAAGGTCAGCCACGTG 59.262 50.000 9.08 9.08 37.19 4.49
232 234 0.738389 CACAAAAAGGTCAGCCACGT 59.262 50.000 0.00 0.00 37.19 4.49
233 235 0.738389 ACACAAAAAGGTCAGCCACG 59.262 50.000 0.00 0.00 37.19 4.94
234 236 1.748493 TCACACAAAAAGGTCAGCCAC 59.252 47.619 0.00 0.00 37.19 5.01
235 237 1.748493 GTCACACAAAAAGGTCAGCCA 59.252 47.619 0.00 0.00 37.19 4.75
236 238 1.268539 CGTCACACAAAAAGGTCAGCC 60.269 52.381 0.00 0.00 0.00 4.85
237 239 1.400494 ACGTCACACAAAAAGGTCAGC 59.600 47.619 0.00 0.00 0.00 4.26
238 240 2.031683 GGACGTCACACAAAAAGGTCAG 59.968 50.000 18.91 0.00 31.25 3.51
239 241 2.011222 GGACGTCACACAAAAAGGTCA 58.989 47.619 18.91 0.00 31.25 4.02
240 242 1.004292 CGGACGTCACACAAAAAGGTC 60.004 52.381 18.91 0.00 0.00 3.85
241 243 1.011333 CGGACGTCACACAAAAAGGT 58.989 50.000 18.91 0.00 0.00 3.50
242 244 1.004292 GTCGGACGTCACACAAAAAGG 60.004 52.381 18.91 0.00 0.00 3.11
243 245 1.661617 TGTCGGACGTCACACAAAAAG 59.338 47.619 18.91 0.00 0.00 2.27
244 246 1.394227 GTGTCGGACGTCACACAAAAA 59.606 47.619 25.84 2.94 42.20 1.94
245 247 1.000884 GTGTCGGACGTCACACAAAA 58.999 50.000 25.84 3.24 42.20 2.44
246 248 2.668203 GTGTCGGACGTCACACAAA 58.332 52.632 25.84 3.84 42.20 2.83
247 249 4.405762 GTGTCGGACGTCACACAA 57.594 55.556 25.84 8.50 42.20 3.33
249 251 0.575390 CTTTGTGTCGGACGTCACAC 59.425 55.000 24.68 24.68 42.01 3.82
250 252 0.528901 CCTTTGTGTCGGACGTCACA 60.529 55.000 18.91 17.94 40.99 3.58
251 253 1.828331 GCCTTTGTGTCGGACGTCAC 61.828 60.000 18.91 13.60 35.37 3.67
252 254 1.593209 GCCTTTGTGTCGGACGTCA 60.593 57.895 18.91 2.88 0.00 4.35
253 255 2.654912 CGCCTTTGTGTCGGACGTC 61.655 63.158 7.13 7.13 0.00 4.34
254 256 2.660552 CGCCTTTGTGTCGGACGT 60.661 61.111 3.34 0.00 0.00 4.34
255 257 4.072088 GCGCCTTTGTGTCGGACG 62.072 66.667 0.00 0.00 0.00 4.79
256 258 3.723348 GGCGCCTTTGTGTCGGAC 61.723 66.667 22.15 0.00 0.00 4.79
257 259 4.243008 TGGCGCCTTTGTGTCGGA 62.243 61.111 29.70 0.00 0.00 4.55
258 260 4.025401 GTGGCGCCTTTGTGTCGG 62.025 66.667 29.70 0.00 0.00 4.79
259 261 3.276091 TGTGGCGCCTTTGTGTCG 61.276 61.111 29.70 0.00 0.00 4.35
260 262 0.882927 TAGTGTGGCGCCTTTGTGTC 60.883 55.000 29.70 10.72 0.00 3.67
261 263 1.147376 TAGTGTGGCGCCTTTGTGT 59.853 52.632 29.70 9.85 0.00 3.72
262 264 1.163420 TGTAGTGTGGCGCCTTTGTG 61.163 55.000 29.70 0.00 0.00 3.33
263 265 0.250727 ATGTAGTGTGGCGCCTTTGT 60.251 50.000 29.70 12.53 0.00 2.83
264 266 0.447801 GATGTAGTGTGGCGCCTTTG 59.552 55.000 29.70 0.00 0.00 2.77
265 267 1.019278 CGATGTAGTGTGGCGCCTTT 61.019 55.000 29.70 12.66 0.00 3.11
266 268 1.447838 CGATGTAGTGTGGCGCCTT 60.448 57.895 29.70 13.03 0.00 4.35
267 269 2.184322 CGATGTAGTGTGGCGCCT 59.816 61.111 29.70 9.99 0.00 5.52
268 270 2.125673 ACGATGTAGTGTGGCGCC 60.126 61.111 22.73 22.73 0.00 6.53
269 271 3.081133 CACGATGTAGTGTGGCGC 58.919 61.111 0.00 0.00 37.35 6.53
270 272 1.288419 TTGCACGATGTAGTGTGGCG 61.288 55.000 0.00 0.00 43.61 5.69
271 273 0.165944 GTTGCACGATGTAGTGTGGC 59.834 55.000 0.00 0.00 43.61 5.01
272 274 0.438445 CGTTGCACGATGTAGTGTGG 59.562 55.000 3.04 0.00 46.05 4.17
273 275 0.179250 GCGTTGCACGATGTAGTGTG 60.179 55.000 11.94 0.00 46.05 3.82
274 276 1.289109 GGCGTTGCACGATGTAGTGT 61.289 55.000 11.94 0.00 46.05 3.55
275 277 1.014044 AGGCGTTGCACGATGTAGTG 61.014 55.000 11.94 0.00 46.05 2.74
276 278 0.736325 GAGGCGTTGCACGATGTAGT 60.736 55.000 11.94 0.00 46.05 2.73
277 279 0.735978 TGAGGCGTTGCACGATGTAG 60.736 55.000 11.94 0.00 46.05 2.74
278 280 1.011968 GTGAGGCGTTGCACGATGTA 61.012 55.000 11.94 0.00 46.05 2.29
279 281 2.030412 TGAGGCGTTGCACGATGT 59.970 55.556 11.94 0.00 46.05 3.06
280 282 2.231745 CTGTGAGGCGTTGCACGATG 62.232 60.000 11.94 0.00 46.05 3.84
281 283 2.029288 CTGTGAGGCGTTGCACGAT 61.029 57.895 11.94 0.85 46.05 3.73
282 284 2.434658 ATCTGTGAGGCGTTGCACGA 62.435 55.000 11.94 0.00 46.05 4.35
283 285 0.735978 TATCTGTGAGGCGTTGCACG 60.736 55.000 4.61 4.61 45.88 5.34
284 286 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
285 287 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
286 288 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
292 294 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
293 295 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
294 296 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
295 297 0.100682 ACGTGTAGCGCCTATCTGTG 59.899 55.000 2.29 0.00 46.11 3.66
296 298 0.381089 GACGTGTAGCGCCTATCTGT 59.619 55.000 2.29 0.00 46.11 3.41
297 299 0.663688 AGACGTGTAGCGCCTATCTG 59.336 55.000 2.29 0.00 46.11 2.90
298 300 0.663688 CAGACGTGTAGCGCCTATCT 59.336 55.000 2.29 0.00 46.11 1.98
299 301 0.317938 CCAGACGTGTAGCGCCTATC 60.318 60.000 2.29 0.00 46.11 2.08
300 302 1.734137 CCAGACGTGTAGCGCCTAT 59.266 57.895 2.29 0.00 46.11 2.57
301 303 3.060020 GCCAGACGTGTAGCGCCTA 62.060 63.158 2.29 0.00 46.11 3.93
302 304 4.436998 GCCAGACGTGTAGCGCCT 62.437 66.667 2.29 0.00 46.11 5.52
304 306 4.735132 TGGCCAGACGTGTAGCGC 62.735 66.667 0.00 0.00 46.11 5.92
306 308 2.815647 GCTGGCCAGACGTGTAGC 60.816 66.667 37.21 15.66 0.00 3.58
307 309 2.507102 CGCTGGCCAGACGTGTAG 60.507 66.667 37.21 8.65 0.00 2.74
308 310 2.863346 AACGCTGGCCAGACGTGTA 61.863 57.895 37.80 5.56 39.64 2.90
309 311 4.235762 AACGCTGGCCAGACGTGT 62.236 61.111 37.80 28.35 39.64 4.49
310 312 3.716006 CAACGCTGGCCAGACGTG 61.716 66.667 37.80 29.73 39.64 4.49
313 315 4.030452 GTGCAACGCTGGCCAGAC 62.030 66.667 37.21 24.73 0.00 3.51
323 325 3.357079 GCAGTCTGGGGTGCAACG 61.357 66.667 1.14 0.00 39.62 4.10
324 326 2.985847 GGCAGTCTGGGGTGCAAC 60.986 66.667 1.14 0.00 41.75 4.17
325 327 4.284550 GGGCAGTCTGGGGTGCAA 62.285 66.667 1.14 0.00 41.75 4.08
327 329 3.808218 TTTGGGCAGTCTGGGGTGC 62.808 63.158 1.14 0.00 39.08 5.01
328 330 0.758685 TTTTTGGGCAGTCTGGGGTG 60.759 55.000 1.14 0.00 0.00 4.61
329 331 0.190815 ATTTTTGGGCAGTCTGGGGT 59.809 50.000 1.14 0.00 0.00 4.95
330 332 1.002315 CAATTTTTGGGCAGTCTGGGG 59.998 52.381 1.14 0.00 0.00 4.96
331 333 1.608801 GCAATTTTTGGGCAGTCTGGG 60.609 52.381 1.14 0.00 0.00 4.45
332 334 1.345415 AGCAATTTTTGGGCAGTCTGG 59.655 47.619 1.14 0.00 0.00 3.86
333 335 2.825861 AGCAATTTTTGGGCAGTCTG 57.174 45.000 0.00 0.00 0.00 3.51
334 336 3.897505 ACTTAGCAATTTTTGGGCAGTCT 59.102 39.130 0.00 0.00 0.00 3.24
335 337 4.237724 GACTTAGCAATTTTTGGGCAGTC 58.762 43.478 0.00 0.00 0.00 3.51
336 338 3.640967 TGACTTAGCAATTTTTGGGCAGT 59.359 39.130 0.00 0.00 0.00 4.40
337 339 4.255833 TGACTTAGCAATTTTTGGGCAG 57.744 40.909 0.00 0.00 0.00 4.85
338 340 4.888326 ATGACTTAGCAATTTTTGGGCA 57.112 36.364 0.00 0.00 0.00 5.36
339 341 6.238184 GCATAATGACTTAGCAATTTTTGGGC 60.238 38.462 0.00 0.00 0.00 5.36
340 342 6.817641 TGCATAATGACTTAGCAATTTTTGGG 59.182 34.615 0.00 0.00 31.42 4.12
341 343 7.760794 TCTGCATAATGACTTAGCAATTTTTGG 59.239 33.333 0.00 0.00 34.45 3.28
342 344 8.692110 TCTGCATAATGACTTAGCAATTTTTG 57.308 30.769 0.00 0.00 34.45 2.44
343 345 7.490402 GCTCTGCATAATGACTTAGCAATTTTT 59.510 33.333 0.00 0.00 34.45 1.94
344 346 6.976925 GCTCTGCATAATGACTTAGCAATTTT 59.023 34.615 0.00 0.00 34.45 1.82
345 347 6.460676 GGCTCTGCATAATGACTTAGCAATTT 60.461 38.462 0.00 0.00 34.45 1.82
346 348 5.009410 GGCTCTGCATAATGACTTAGCAATT 59.991 40.000 0.00 0.00 34.45 2.32
347 349 4.518211 GGCTCTGCATAATGACTTAGCAAT 59.482 41.667 0.00 0.00 34.45 3.56
348 350 3.879295 GGCTCTGCATAATGACTTAGCAA 59.121 43.478 0.00 0.00 34.45 3.91
349 351 3.135348 AGGCTCTGCATAATGACTTAGCA 59.865 43.478 0.00 0.00 0.00 3.49
350 352 3.737850 AGGCTCTGCATAATGACTTAGC 58.262 45.455 0.00 0.00 0.00 3.09
351 353 6.753180 TCTTAGGCTCTGCATAATGACTTAG 58.247 40.000 0.00 0.00 34.39 2.18
352 354 6.731292 TCTTAGGCTCTGCATAATGACTTA 57.269 37.500 0.00 0.00 34.39 2.24
353 355 5.609423 CTCTTAGGCTCTGCATAATGACTT 58.391 41.667 0.00 0.00 34.39 3.01
354 356 4.502950 GCTCTTAGGCTCTGCATAATGACT 60.503 45.833 0.00 0.00 34.39 3.41
355 357 3.745458 GCTCTTAGGCTCTGCATAATGAC 59.255 47.826 0.00 0.00 34.39 3.06
356 358 3.645212 AGCTCTTAGGCTCTGCATAATGA 59.355 43.478 0.00 0.00 38.24 2.57
357 359 4.005487 AGCTCTTAGGCTCTGCATAATG 57.995 45.455 0.00 0.00 38.24 1.90
358 360 4.222588 CCTAGCTCTTAGGCTCTGCATAAT 59.777 45.833 0.00 0.00 42.50 1.28
359 361 3.576118 CCTAGCTCTTAGGCTCTGCATAA 59.424 47.826 0.00 0.00 42.50 1.90
360 362 3.161067 CCTAGCTCTTAGGCTCTGCATA 58.839 50.000 0.00 0.00 42.50 3.14
361 363 1.969923 CCTAGCTCTTAGGCTCTGCAT 59.030 52.381 0.00 0.00 42.50 3.96
362 364 1.407936 CCTAGCTCTTAGGCTCTGCA 58.592 55.000 0.00 0.00 42.50 4.41
377 379 2.103143 CGTCAGTGGAGCGCCTAG 59.897 66.667 8.34 0.00 34.31 3.02
378 380 4.129737 GCGTCAGTGGAGCGCCTA 62.130 66.667 8.34 0.00 44.67 3.93
382 384 2.103143 CTAGGCGTCAGTGGAGCG 59.897 66.667 0.00 2.38 0.00 5.03
383 385 2.202810 GCTAGGCGTCAGTGGAGC 60.203 66.667 0.00 2.72 0.00 4.70
384 386 1.034838 AGAGCTAGGCGTCAGTGGAG 61.035 60.000 0.00 0.00 0.00 3.86
385 387 1.000771 AGAGCTAGGCGTCAGTGGA 60.001 57.895 0.00 0.00 0.00 4.02
386 388 1.315981 TGAGAGCTAGGCGTCAGTGG 61.316 60.000 0.00 0.00 0.00 4.00
387 389 0.100325 CTGAGAGCTAGGCGTCAGTG 59.900 60.000 13.18 0.00 38.66 3.66
388 390 1.034838 CCTGAGAGCTAGGCGTCAGT 61.035 60.000 17.23 0.00 40.44 3.41
389 391 1.732917 CCTGAGAGCTAGGCGTCAG 59.267 63.158 13.96 13.96 41.15 3.51
390 392 3.926003 CCTGAGAGCTAGGCGTCA 58.074 61.111 0.00 0.00 0.00 4.35
400 402 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
401 403 3.619767 AGTGTGCAGCGCCTGAGA 61.620 61.111 2.29 0.00 32.44 3.27
402 404 3.420606 CAGTGTGCAGCGCCTGAG 61.421 66.667 15.59 0.00 32.44 3.35
403 405 3.927548 TCAGTGTGCAGCGCCTGA 61.928 61.111 18.04 18.04 32.44 3.86
404 406 3.720193 GTCAGTGTGCAGCGCCTG 61.720 66.667 2.29 14.85 34.12 4.85
405 407 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
406 408 1.227999 TTAAGTCAGTGTGCAGCGCC 61.228 55.000 2.29 0.00 0.00 6.53
407 409 0.798776 ATTAAGTCAGTGTGCAGCGC 59.201 50.000 0.00 0.00 0.00 5.92
408 410 4.864916 ATTATTAAGTCAGTGTGCAGCG 57.135 40.909 0.00 0.00 0.00 5.18
409 411 6.249260 CGAAAATTATTAAGTCAGTGTGCAGC 59.751 38.462 0.00 0.00 0.00 5.25
410 412 6.742718 CCGAAAATTATTAAGTCAGTGTGCAG 59.257 38.462 0.00 0.00 0.00 4.41
411 413 6.428465 TCCGAAAATTATTAAGTCAGTGTGCA 59.572 34.615 0.00 0.00 0.00 4.57
412 414 6.837992 TCCGAAAATTATTAAGTCAGTGTGC 58.162 36.000 0.00 0.00 0.00 4.57
413 415 8.664798 TGATCCGAAAATTATTAAGTCAGTGTG 58.335 33.333 0.00 0.00 0.00 3.82
414 416 8.665685 GTGATCCGAAAATTATTAAGTCAGTGT 58.334 33.333 0.00 0.00 0.00 3.55
415 417 8.664798 TGTGATCCGAAAATTATTAAGTCAGTG 58.335 33.333 0.00 0.00 0.00 3.66
416 418 8.665685 GTGTGATCCGAAAATTATTAAGTCAGT 58.334 33.333 0.00 0.00 0.00 3.41
417 419 8.122952 GGTGTGATCCGAAAATTATTAAGTCAG 58.877 37.037 0.00 0.00 0.00 3.51
418 420 7.981142 GGTGTGATCCGAAAATTATTAAGTCA 58.019 34.615 0.00 0.00 0.00 3.41
433 435 4.429212 TCGCACCGGTGTGATCCG 62.429 66.667 39.85 30.15 45.76 4.18
437 439 2.910479 AGAGTCGCACCGGTGTGA 60.910 61.111 39.85 39.85 45.76 3.58
438 440 2.734723 CAGAGTCGCACCGGTGTG 60.735 66.667 36.83 36.83 45.65 3.82
439 441 3.991051 CCAGAGTCGCACCGGTGT 61.991 66.667 33.92 16.05 0.00 4.16
440 442 3.680786 TCCAGAGTCGCACCGGTG 61.681 66.667 30.66 30.66 0.00 4.94
441 443 3.681835 GTCCAGAGTCGCACCGGT 61.682 66.667 0.00 0.00 0.00 5.28
442 444 3.633094 CTGTCCAGAGTCGCACCGG 62.633 68.421 0.00 0.00 0.00 5.28
443 445 2.126307 CTGTCCAGAGTCGCACCG 60.126 66.667 0.00 0.00 0.00 4.94
444 446 2.262915 CCTGTCCAGAGTCGCACC 59.737 66.667 0.00 0.00 0.00 5.01
445 447 2.433318 GCCTGTCCAGAGTCGCAC 60.433 66.667 0.00 0.00 0.00 5.34
446 448 4.056125 CGCCTGTCCAGAGTCGCA 62.056 66.667 0.00 0.00 0.00 5.10
447 449 4.057428 ACGCCTGTCCAGAGTCGC 62.057 66.667 0.00 0.00 0.00 5.19
448 450 1.583495 TACACGCCTGTCCAGAGTCG 61.583 60.000 0.00 0.00 0.00 4.18
449 451 0.601558 TTACACGCCTGTCCAGAGTC 59.398 55.000 0.00 0.00 0.00 3.36
450 452 0.317479 GTTACACGCCTGTCCAGAGT 59.683 55.000 0.00 0.00 0.00 3.24
451 453 0.732880 CGTTACACGCCTGTCCAGAG 60.733 60.000 0.00 0.00 33.65 3.35
452 454 1.287815 CGTTACACGCCTGTCCAGA 59.712 57.895 0.00 0.00 33.65 3.86
453 455 3.856508 CGTTACACGCCTGTCCAG 58.143 61.111 0.00 0.00 33.65 3.86
463 465 3.436496 GCCTCACAGATAGACGTTACAC 58.564 50.000 0.00 0.00 0.00 2.90
464 466 2.096980 CGCCTCACAGATAGACGTTACA 59.903 50.000 0.00 0.00 0.00 2.41
465 467 2.097142 ACGCCTCACAGATAGACGTTAC 59.903 50.000 0.00 0.00 0.00 2.50
466 468 2.362736 ACGCCTCACAGATAGACGTTA 58.637 47.619 0.00 0.00 0.00 3.18
467 469 1.174783 ACGCCTCACAGATAGACGTT 58.825 50.000 0.00 0.00 0.00 3.99
468 470 1.135373 CAACGCCTCACAGATAGACGT 60.135 52.381 0.00 0.00 0.00 4.34
469 471 1.550065 CAACGCCTCACAGATAGACG 58.450 55.000 0.00 0.00 0.00 4.18
470 472 1.281899 GCAACGCCTCACAGATAGAC 58.718 55.000 0.00 0.00 0.00 2.59
471 473 0.894835 TGCAACGCCTCACAGATAGA 59.105 50.000 0.00 0.00 0.00 1.98
472 474 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
473 475 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
474 476 0.534877 TTGTGCAACGCCTCACAGAT 60.535 50.000 0.00 0.00 43.15 2.90
475 477 0.534877 ATTGTGCAACGCCTCACAGA 60.535 50.000 0.00 0.00 43.15 3.41
476 478 0.386352 CATTGTGCAACGCCTCACAG 60.386 55.000 0.00 0.00 43.15 3.66
477 479 1.100463 ACATTGTGCAACGCCTCACA 61.100 50.000 0.00 0.86 42.39 3.58
478 480 0.871722 TACATTGTGCAACGCCTCAC 59.128 50.000 0.00 0.00 42.39 3.51
479 481 1.155889 CTACATTGTGCAACGCCTCA 58.844 50.000 0.00 0.00 42.39 3.86
480 482 1.135972 CACTACATTGTGCAACGCCTC 60.136 52.381 0.00 0.00 42.39 4.70
481 483 0.874390 CACTACATTGTGCAACGCCT 59.126 50.000 0.00 0.00 42.39 5.52
482 484 0.591170 ACACTACATTGTGCAACGCC 59.409 50.000 0.00 0.00 42.39 5.68
483 485 1.662876 CCACACTACATTGTGCAACGC 60.663 52.381 0.00 0.00 44.79 4.84
484 486 1.662876 GCCACACTACATTGTGCAACG 60.663 52.381 0.00 0.00 44.79 4.10
485 487 1.662876 CGCCACACTACATTGTGCAAC 60.663 52.381 0.00 0.00 44.79 4.17
486 488 0.590682 CGCCACACTACATTGTGCAA 59.409 50.000 0.00 0.00 44.79 4.08
487 489 1.851021 GCGCCACACTACATTGTGCA 61.851 55.000 0.00 0.00 44.79 4.57
488 490 1.154225 GCGCCACACTACATTGTGC 60.154 57.895 0.00 0.00 44.79 4.57
489 491 0.955428 AGGCGCCACACTACATTGTG 60.955 55.000 31.54 0.00 45.57 3.33
490 492 0.250727 AAGGCGCCACACTACATTGT 60.251 50.000 31.54 0.00 0.00 2.71
491 493 0.447801 GAAGGCGCCACACTACATTG 59.552 55.000 31.54 0.00 0.00 2.82
492 494 0.036164 TGAAGGCGCCACACTACATT 59.964 50.000 31.54 11.63 0.00 2.71
493 495 0.253044 ATGAAGGCGCCACACTACAT 59.747 50.000 31.54 19.42 0.00 2.29
494 496 0.673333 CATGAAGGCGCCACACTACA 60.673 55.000 31.54 18.06 0.00 2.74
495 497 0.673644 ACATGAAGGCGCCACACTAC 60.674 55.000 31.54 12.91 0.00 2.73
496 498 0.391130 GACATGAAGGCGCCACACTA 60.391 55.000 31.54 10.42 0.00 2.74
497 499 1.672356 GACATGAAGGCGCCACACT 60.672 57.895 31.54 16.05 0.00 3.55
498 500 2.870372 GACATGAAGGCGCCACAC 59.130 61.111 31.54 19.20 0.00 3.82
499 501 2.741985 CGACATGAAGGCGCCACA 60.742 61.111 31.54 27.20 45.03 4.17
505 507 3.195698 GACGCCCGACATGAAGGC 61.196 66.667 13.24 13.24 43.53 4.35
506 508 2.100631 GTGACGCCCGACATGAAGG 61.101 63.158 0.00 1.50 0.00 3.46
507 509 0.740868 ATGTGACGCCCGACATGAAG 60.741 55.000 0.00 0.00 31.47 3.02
508 510 0.533032 TATGTGACGCCCGACATGAA 59.467 50.000 0.00 0.00 34.60 2.57
509 511 0.533032 TTATGTGACGCCCGACATGA 59.467 50.000 0.00 0.00 34.60 3.07
510 512 1.364721 TTTATGTGACGCCCGACATG 58.635 50.000 0.00 0.00 34.60 3.21
511 513 2.102070 TTTTATGTGACGCCCGACAT 57.898 45.000 0.00 0.00 36.72 3.06
512 514 1.801771 CTTTTTATGTGACGCCCGACA 59.198 47.619 0.00 0.00 0.00 4.35
513 515 2.070783 TCTTTTTATGTGACGCCCGAC 58.929 47.619 0.00 0.00 0.00 4.79
514 516 2.459060 TCTTTTTATGTGACGCCCGA 57.541 45.000 0.00 0.00 0.00 5.14
515 517 2.675844 TGATCTTTTTATGTGACGCCCG 59.324 45.455 0.00 0.00 0.00 6.13
516 518 3.487544 GCTGATCTTTTTATGTGACGCCC 60.488 47.826 0.00 0.00 0.00 6.13
517 519 3.487544 GGCTGATCTTTTTATGTGACGCC 60.488 47.826 0.00 0.00 0.00 5.68
518 520 3.685058 GGCTGATCTTTTTATGTGACGC 58.315 45.455 0.00 0.00 0.00 5.19
519 521 3.785505 GCGGCTGATCTTTTTATGTGACG 60.786 47.826 0.00 0.00 0.00 4.35
520 522 3.685058 GCGGCTGATCTTTTTATGTGAC 58.315 45.455 0.00 0.00 0.00 3.67
521 523 2.351418 CGCGGCTGATCTTTTTATGTGA 59.649 45.455 0.00 0.00 0.00 3.58
522 524 2.095853 ACGCGGCTGATCTTTTTATGTG 59.904 45.455 12.47 0.00 0.00 3.21
523 525 2.095853 CACGCGGCTGATCTTTTTATGT 59.904 45.455 12.47 0.00 0.00 2.29
524 526 2.351418 TCACGCGGCTGATCTTTTTATG 59.649 45.455 12.47 0.00 0.00 1.90
525 527 2.627945 TCACGCGGCTGATCTTTTTAT 58.372 42.857 12.47 0.00 0.00 1.40
526 528 2.087501 TCACGCGGCTGATCTTTTTA 57.912 45.000 12.47 0.00 0.00 1.52
527 529 1.234821 TTCACGCGGCTGATCTTTTT 58.765 45.000 12.47 0.00 0.00 1.94
528 530 1.234821 TTTCACGCGGCTGATCTTTT 58.765 45.000 12.47 0.00 0.00 2.27
529 531 1.453155 ATTTCACGCGGCTGATCTTT 58.547 45.000 12.47 0.00 0.00 2.52
530 532 2.309528 TATTTCACGCGGCTGATCTT 57.690 45.000 12.47 0.00 0.00 2.40
531 533 2.309528 TTATTTCACGCGGCTGATCT 57.690 45.000 12.47 0.00 0.00 2.75
532 534 3.609103 AATTATTTCACGCGGCTGATC 57.391 42.857 12.47 0.00 0.00 2.92
533 535 3.376859 TGAAATTATTTCACGCGGCTGAT 59.623 39.130 15.46 1.51 44.21 2.90
534 536 2.744741 TGAAATTATTTCACGCGGCTGA 59.255 40.909 15.46 2.44 44.21 4.26
535 537 3.129852 TGAAATTATTTCACGCGGCTG 57.870 42.857 15.46 0.00 44.21 4.85
543 545 4.520874 TGAACTGCCCGTGAAATTATTTCA 59.479 37.500 15.46 15.46 46.68 2.69
544 546 5.054390 TGAACTGCCCGTGAAATTATTTC 57.946 39.130 10.47 10.47 40.08 2.17
545 547 5.659440 ATGAACTGCCCGTGAAATTATTT 57.341 34.783 0.00 0.00 0.00 1.40
546 548 5.418840 AGAATGAACTGCCCGTGAAATTATT 59.581 36.000 0.00 0.00 0.00 1.40
547 549 4.949856 AGAATGAACTGCCCGTGAAATTAT 59.050 37.500 0.00 0.00 0.00 1.28
548 550 4.155826 CAGAATGAACTGCCCGTGAAATTA 59.844 41.667 0.00 0.00 39.69 1.40
549 551 3.057315 CAGAATGAACTGCCCGTGAAATT 60.057 43.478 0.00 0.00 39.69 1.82
550 552 2.489329 CAGAATGAACTGCCCGTGAAAT 59.511 45.455 0.00 0.00 39.69 2.17
551 553 1.879380 CAGAATGAACTGCCCGTGAAA 59.121 47.619 0.00 0.00 39.69 2.69
552 554 1.202758 ACAGAATGAACTGCCCGTGAA 60.203 47.619 0.00 0.00 39.69 3.18
553 555 0.396435 ACAGAATGAACTGCCCGTGA 59.604 50.000 0.00 0.00 39.69 4.35
554 556 0.518636 CACAGAATGAACTGCCCGTG 59.481 55.000 0.00 0.00 39.69 4.94
555 557 0.396435 TCACAGAATGAACTGCCCGT 59.604 50.000 0.00 0.00 39.69 5.28
556 558 1.742761 ATCACAGAATGAACTGCCCG 58.257 50.000 0.00 0.00 41.93 6.13
557 559 3.841643 CAAATCACAGAATGAACTGCCC 58.158 45.455 0.00 0.00 41.93 5.36
558 560 3.248266 GCAAATCACAGAATGAACTGCC 58.752 45.455 0.00 0.00 41.93 4.85
559 561 2.912967 CGCAAATCACAGAATGAACTGC 59.087 45.455 0.00 4.38 41.93 4.40
560 562 4.152938 TCTCGCAAATCACAGAATGAACTG 59.847 41.667 0.00 0.00 41.93 3.16
561 563 4.318332 TCTCGCAAATCACAGAATGAACT 58.682 39.130 0.00 0.00 41.93 3.01
562 564 4.153117 ACTCTCGCAAATCACAGAATGAAC 59.847 41.667 0.00 0.00 41.93 3.18
563 565 4.318332 ACTCTCGCAAATCACAGAATGAA 58.682 39.130 0.00 0.00 41.93 2.57
564 566 3.928992 GACTCTCGCAAATCACAGAATGA 59.071 43.478 0.00 0.00 43.13 2.57
565 567 3.931468 AGACTCTCGCAAATCACAGAATG 59.069 43.478 0.00 0.00 46.00 2.67
566 568 4.199432 AGACTCTCGCAAATCACAGAAT 57.801 40.909 0.00 0.00 0.00 2.40
567 569 3.667497 AGACTCTCGCAAATCACAGAA 57.333 42.857 0.00 0.00 0.00 3.02
568 570 3.759086 AGTAGACTCTCGCAAATCACAGA 59.241 43.478 0.00 0.00 0.00 3.41
569 571 4.103365 AGTAGACTCTCGCAAATCACAG 57.897 45.455 0.00 0.00 0.00 3.66
570 572 4.700692 ACTAGTAGACTCTCGCAAATCACA 59.299 41.667 3.59 0.00 0.00 3.58
571 573 5.031578 CACTAGTAGACTCTCGCAAATCAC 58.968 45.833 3.59 0.00 0.00 3.06
572 574 4.096532 CCACTAGTAGACTCTCGCAAATCA 59.903 45.833 3.59 0.00 0.00 2.57
573 575 4.602995 CCACTAGTAGACTCTCGCAAATC 58.397 47.826 3.59 0.00 0.00 2.17
574 576 3.181485 GCCACTAGTAGACTCTCGCAAAT 60.181 47.826 3.59 0.00 0.00 2.32
575 577 2.163815 GCCACTAGTAGACTCTCGCAAA 59.836 50.000 3.59 0.00 0.00 3.68
576 578 1.743958 GCCACTAGTAGACTCTCGCAA 59.256 52.381 3.59 0.00 0.00 4.85
577 579 1.380524 GCCACTAGTAGACTCTCGCA 58.619 55.000 3.59 0.00 0.00 5.10
578 580 0.305313 CGCCACTAGTAGACTCTCGC 59.695 60.000 3.59 0.00 0.00 5.03
579 581 0.938713 CCGCCACTAGTAGACTCTCG 59.061 60.000 3.59 0.38 0.00 4.04
580 582 1.310904 CCCGCCACTAGTAGACTCTC 58.689 60.000 3.59 0.00 0.00 3.20
581 583 0.624785 ACCCGCCACTAGTAGACTCT 59.375 55.000 3.59 0.00 0.00 3.24
582 584 0.739561 CACCCGCCACTAGTAGACTC 59.260 60.000 3.59 0.00 0.00 3.36
600 602 0.662619 CGAAAAGTTCCACTGCTGCA 59.337 50.000 0.88 0.88 0.00 4.41
669 671 1.446099 CCATGTCAGTGACGTCCCG 60.446 63.158 15.23 4.79 34.95 5.14
689 691 1.340211 CCAGGTCTCTACGACAGGTCT 60.340 57.143 0.00 0.00 44.68 3.85
696 698 2.439701 CGGGCCAGGTCTCTACGA 60.440 66.667 4.39 0.00 0.00 3.43
720 722 1.003573 ATCCACTCCCTCCCTCACC 59.996 63.158 0.00 0.00 0.00 4.02
807 809 4.547367 CCCTCGTCATTCCCGCCC 62.547 72.222 0.00 0.00 0.00 6.13
942 1041 3.367321 AGTAGTGGTAAGAGGAGGAAGC 58.633 50.000 0.00 0.00 0.00 3.86
980 1082 3.592865 ACAAAAGAGAGGAAGAGAGGGT 58.407 45.455 0.00 0.00 0.00 4.34
1046 1150 5.505654 GCTGGACGAAGAACAATTTTTCTGA 60.506 40.000 7.60 0.00 35.92 3.27
1054 1158 0.322546 GGGGCTGGACGAAGAACAAT 60.323 55.000 0.00 0.00 0.00 2.71
1056 1160 1.827399 GAGGGGCTGGACGAAGAACA 61.827 60.000 0.00 0.00 0.00 3.18
1057 1161 1.079057 GAGGGGCTGGACGAAGAAC 60.079 63.158 0.00 0.00 0.00 3.01
1178 1292 2.107953 GCTCGTCAGATCCAGCCC 59.892 66.667 0.00 0.00 0.00 5.19
1191 1305 2.972505 AACCAACACCGCAGCTCG 60.973 61.111 0.00 0.00 38.08 5.03
1196 1310 1.034838 AAGAAGCAACCAACACCGCA 61.035 50.000 0.00 0.00 0.00 5.69
1206 1320 2.287849 GCACCTTGAAGGAAGAAGCAAC 60.288 50.000 19.83 0.00 37.67 4.17
1239 1355 4.706842 TGAACAGGCTAAGAAAGAAGGT 57.293 40.909 0.00 0.00 0.00 3.50
1249 1369 4.761739 CCAAGAGAAACATGAACAGGCTAA 59.238 41.667 0.00 0.00 0.00 3.09
1254 1374 6.154445 CCAAATCCAAGAGAAACATGAACAG 58.846 40.000 0.00 0.00 0.00 3.16
1264 1384 3.559171 CGGAGTTCCCAAATCCAAGAGAA 60.559 47.826 3.82 0.00 32.31 2.87
1268 1388 1.271926 ACCGGAGTTCCCAAATCCAAG 60.272 52.381 9.46 0.00 32.31 3.61
1390 1520 4.174762 GCGGCCGTGGAAATAAATTTAAA 58.825 39.130 28.70 0.00 0.00 1.52
1393 1523 1.134936 GGCGGCCGTGGAAATAAATTT 60.135 47.619 28.70 0.00 0.00 1.82
1395 1525 1.720694 CGGCGGCCGTGGAAATAAAT 61.721 55.000 32.14 0.00 42.73 1.40
1396 1526 2.400158 CGGCGGCCGTGGAAATAAA 61.400 57.895 32.14 0.00 42.73 1.40
1397 1527 2.820479 CGGCGGCCGTGGAAATAA 60.820 61.111 32.14 0.00 42.73 1.40
1460 1590 5.102313 CCCGAACCAAATCAATAGAAAAGC 58.898 41.667 0.00 0.00 0.00 3.51
1508 1638 3.635433 TCGAAGCTAAATCGACCGG 57.365 52.632 4.90 0.00 43.76 5.28
1513 1643 6.199154 ACAGTGACATAATCGAAGCTAAATCG 59.801 38.462 0.00 0.00 41.53 3.34
1549 1679 2.885266 ACGACAAGACTGCTGTAGAAGA 59.115 45.455 0.00 0.00 0.00 2.87
1605 1736 7.384387 GCTCGAGGAAAACCGATTACTAATAAT 59.616 37.037 15.58 0.00 34.08 1.28
1606 1737 6.698766 GCTCGAGGAAAACCGATTACTAATAA 59.301 38.462 15.58 0.00 34.08 1.40
1608 1739 5.048507 GCTCGAGGAAAACCGATTACTAAT 58.951 41.667 15.58 0.00 34.08 1.73
1609 1740 4.427312 GCTCGAGGAAAACCGATTACTAA 58.573 43.478 15.58 0.00 34.08 2.24
1610 1741 3.181483 GGCTCGAGGAAAACCGATTACTA 60.181 47.826 15.58 0.00 34.08 1.82
1611 1742 2.418334 GGCTCGAGGAAAACCGATTACT 60.418 50.000 15.58 0.00 34.08 2.24
1612 1743 1.931841 GGCTCGAGGAAAACCGATTAC 59.068 52.381 15.58 0.00 34.08 1.89
1613 1744 1.551430 TGGCTCGAGGAAAACCGATTA 59.449 47.619 15.58 0.00 34.08 1.75
1614 1745 0.323629 TGGCTCGAGGAAAACCGATT 59.676 50.000 15.58 0.00 34.08 3.34
1850 1988 6.660521 ACATAGATTTTGACATCTCCTTTGCA 59.339 34.615 0.00 0.00 35.08 4.08
1906 2047 2.368131 TTTTCAGTTCGTGCGCACCG 62.368 55.000 33.23 26.49 0.00 4.94
2215 2359 2.184385 GCAAGAAGCATCGTGAATGG 57.816 50.000 9.08 0.00 44.79 3.16
2676 2828 6.017687 GCATACATGAGACTAACATGATGCAA 60.018 38.462 23.11 7.00 45.13 4.08
2716 2868 9.071276 AGGATATAAAATCATAAACCAGCACAG 57.929 33.333 0.00 0.00 0.00 3.66
2748 2900 8.521170 TGTGTGCTAGTAGAACTCATTAGTAT 57.479 34.615 9.78 0.00 33.75 2.12
2750 2902 6.835819 TGTGTGCTAGTAGAACTCATTAGT 57.164 37.500 9.78 0.00 37.65 2.24
2782 2934 6.398918 ACCTGTGTAGTAGTGACAATCAATC 58.601 40.000 0.00 0.00 0.00 2.67
2787 2939 6.420913 AGAAACCTGTGTAGTAGTGACAAT 57.579 37.500 0.00 0.00 0.00 2.71
2969 3122 2.288030 GCATGACAAGCACAAAGAAGCT 60.288 45.455 0.00 0.00 44.31 3.74
3074 3227 1.040646 CTTCTAGGCAGCGGACCATA 58.959 55.000 0.00 0.00 0.00 2.74
3329 3482 0.389025 CCAAACTGTTGTCCCCTTGC 59.611 55.000 0.00 0.00 32.40 4.01
3765 4503 1.871080 AGCATATTGTAGGCAGCGTC 58.129 50.000 0.00 0.00 38.06 5.19
3828 4566 4.559153 CAAAAATGTCCTGAATGACCCAC 58.441 43.478 0.00 0.00 34.25 4.61
4092 4831 7.568349 AGTATCTCATTCCAATTAAGCACAGA 58.432 34.615 0.00 0.00 0.00 3.41
4184 4931 9.800433 CATCTATTACTCATACTGAATGGCTAG 57.200 37.037 0.00 0.00 36.15 3.42
4206 4961 5.221263 CCGCTAACTTACATGTAGACCATCT 60.221 44.000 5.56 0.00 0.00 2.90
4244 4999 6.742559 TCCCAACTTAAGAACTCACTAAGT 57.257 37.500 10.09 0.00 41.10 2.24
4328 5138 9.599056 TCCACAGAGAGAAATATATGAGAGAAT 57.401 33.333 0.00 0.00 0.00 2.40
4446 5262 2.095372 GGCGTATACTGCACAAGGAAAC 59.905 50.000 17.33 0.00 0.00 2.78
4773 5589 8.579850 AGGAATACAAAATTAACATCAGAGCA 57.420 30.769 0.00 0.00 0.00 4.26
4792 5608 4.152647 AGTATGTCTGCATCGGAGGAATA 58.847 43.478 0.00 0.00 36.58 1.75
4822 5638 7.094377 GCAAGGAAACATGAAATTGTACTCCTA 60.094 37.037 0.00 0.00 39.43 2.94
4823 5639 6.294731 GCAAGGAAACATGAAATTGTACTCCT 60.295 38.462 0.00 0.00 40.89 3.69
4824 5640 5.863935 GCAAGGAAACATGAAATTGTACTCC 59.136 40.000 0.00 0.00 34.31 3.85
4825 5641 6.446318 TGCAAGGAAACATGAAATTGTACTC 58.554 36.000 0.00 0.00 0.00 2.59
4826 5642 6.403866 TGCAAGGAAACATGAAATTGTACT 57.596 33.333 0.00 0.00 0.00 2.73
4827 5643 6.922957 TCTTGCAAGGAAACATGAAATTGTAC 59.077 34.615 25.73 0.00 0.00 2.90
4842 5658 7.285401 AGTTCTTAAACTGAATTCTTGCAAGGA 59.715 33.333 25.73 19.04 44.13 3.36
4930 5746 7.362662 TGATTGTAATTCAAAAGTGACAGCTC 58.637 34.615 0.00 0.00 39.62 4.09
5392 6213 5.836821 TGGTTACAAGTAAACATGCAACA 57.163 34.783 6.61 0.00 37.79 3.33
5740 6564 6.749216 TCAGCGTCTGATTTATCGATTTAC 57.251 37.500 1.71 0.00 35.39 2.01
5822 6646 7.671495 ACTTGCACAACTTTCAAATCTTTTT 57.329 28.000 0.00 0.00 0.00 1.94
5850 6674 0.599204 GAACGGGAGAAACAGCGTCA 60.599 55.000 0.00 0.00 0.00 4.35
5856 6680 1.766496 ACAGAAGGAACGGGAGAAACA 59.234 47.619 0.00 0.00 0.00 2.83
5865 6689 0.242825 TCCGCTGTACAGAAGGAACG 59.757 55.000 27.67 19.60 35.11 3.95
5909 6733 1.939934 CGTTCACCAAAACTGCTCTGA 59.060 47.619 0.00 0.00 0.00 3.27
5961 6785 4.714308 CCAGAGTCAGTAGAAGGGAGAAAT 59.286 45.833 0.00 0.00 0.00 2.17
5981 6806 0.107017 CAAGGGTAGGTGGATGCCAG 60.107 60.000 0.00 0.00 32.34 4.85
6199 7032 3.287222 GCAAGTTTACATGGGCTCCATA 58.713 45.455 6.42 0.00 43.15 2.74
6274 7107 7.721286 ATGCTCAAGTACAAATAGTAGCATC 57.279 36.000 0.00 0.00 35.78 3.91
6559 7392 0.099259 CGGCCATGTGTGCTGTTATG 59.901 55.000 2.24 0.00 0.00 1.90
6656 7567 6.755542 AAGGAAAATTGATGGGGTAAACAA 57.244 33.333 0.00 0.00 0.00 2.83
6657 7568 6.517529 CGAAAGGAAAATTGATGGGGTAAACA 60.518 38.462 0.00 0.00 0.00 2.83
6681 7592 6.136071 CCATTCTTTTCAACACTTGTACTCG 58.864 40.000 0.00 0.00 0.00 4.18
6687 7598 7.775397 AAATCACCATTCTTTTCAACACTTG 57.225 32.000 0.00 0.00 0.00 3.16
6750 7661 3.242543 GCCTTCATGTTAGATCACAAGCG 60.243 47.826 0.00 0.00 0.00 4.68
6804 8024 3.053831 TGGAGAACTAAAAGAAGGGCG 57.946 47.619 0.00 0.00 0.00 6.13
6826 8046 2.511600 GATTCCACGCAGGGACGG 60.512 66.667 0.00 0.00 36.46 4.79
6829 8049 0.982852 AGGATGATTCCACGCAGGGA 60.983 55.000 0.00 0.00 45.30 4.20
6892 8112 2.847327 CAGAAAGCCTCTTCTGGTGA 57.153 50.000 11.26 0.00 45.73 4.02
6943 8163 2.291741 GGAGCCATTTTTCGCATCCTAG 59.708 50.000 0.00 0.00 0.00 3.02
6978 8198 1.801178 GCCAACTTGAGAAGGAACTCG 59.199 52.381 0.00 0.00 38.49 4.18
7138 8358 2.029110 GGCATGGTTAAAGAGCTGCAAA 60.029 45.455 1.02 0.00 34.06 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.