Multiple sequence alignment - TraesCS7D01G220200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G220200 chr7D 100.000 8558 0 0 1 8558 180677796 180686353 0.000000e+00 15804.0
1 TraesCS7D01G220200 chr7D 84.496 258 31 8 5153 5406 591240393 591240141 6.630000e-61 246.0
2 TraesCS7D01G220200 chr7D 82.890 263 33 11 5140 5397 531983068 531982813 8.640000e-55 226.0
3 TraesCS7D01G220200 chr7D 100.000 35 0 0 6822 6856 180684515 180684549 1.990000e-06 65.8
4 TraesCS7D01G220200 chr7A 96.081 4695 153 20 2078 6754 185636721 185641402 0.000000e+00 7622.0
5 TraesCS7D01G220200 chr7A 91.433 1821 69 37 216 2003 185634952 185636718 0.000000e+00 2418.0
6 TraesCS7D01G220200 chr7A 91.519 1238 80 11 6798 8033 185641344 185642558 0.000000e+00 1681.0
7 TraesCS7D01G220200 chr7A 91.475 610 22 8 7955 8558 185642558 185643143 0.000000e+00 811.0
8 TraesCS7D01G220200 chr7A 92.593 216 16 0 1 216 722352961 722353176 2.320000e-80 311.0
9 TraesCS7D01G220200 chr7A 93.421 76 5 0 7594 7669 185642063 185642138 7.020000e-21 113.0
10 TraesCS7D01G220200 chr7B 94.698 1886 68 15 3594 5456 146894299 146896175 0.000000e+00 2900.0
11 TraesCS7D01G220200 chr7B 91.671 1825 94 31 215 2003 146890945 146892747 0.000000e+00 2475.0
12 TraesCS7D01G220200 chr7B 94.310 1529 78 9 2078 3600 146892750 146894275 0.000000e+00 2333.0
13 TraesCS7D01G220200 chr7B 92.358 1230 84 7 5531 6754 146896169 146897394 0.000000e+00 1742.0
14 TraesCS7D01G220200 chr7B 91.871 1021 66 10 6797 7812 146897336 146898344 0.000000e+00 1410.0
15 TraesCS7D01G220200 chr7B 96.684 754 19 3 7809 8558 146898648 146899399 0.000000e+00 1249.0
16 TraesCS7D01G220200 chr7B 93.056 216 15 0 1 216 153573377 153573162 4.990000e-82 316.0
17 TraesCS7D01G220200 chr7B 93.056 216 15 0 1 216 196712847 196713062 4.990000e-82 316.0
18 TraesCS7D01G220200 chr7B 91.667 96 6 2 5444 5539 203031451 203031544 1.940000e-26 132.0
19 TraesCS7D01G220200 chr7B 89.720 107 6 5 5453 5557 551488197 551488094 1.940000e-26 132.0
20 TraesCS7D01G220200 chr7B 90.909 77 7 0 7594 7670 146898060 146898136 4.230000e-18 104.0
21 TraesCS7D01G220200 chr7B 100.000 30 0 0 4127 4156 672525167 672525138 1.000000e-03 56.5
22 TraesCS7D01G220200 chr1D 87.869 643 60 15 4768 5401 462961739 462961106 0.000000e+00 739.0
23 TraesCS7D01G220200 chr1D 84.556 259 29 10 5153 5406 225939125 225938873 6.630000e-61 246.0
24 TraesCS7D01G220200 chr1D 84.556 259 29 10 5153 5406 225962686 225962434 6.630000e-61 246.0
25 TraesCS7D01G220200 chr1D 84.585 253 29 9 5158 5406 225956736 225956490 8.580000e-60 243.0
26 TraesCS7D01G220200 chrUn 93.056 216 15 0 1 216 83540870 83541085 4.990000e-82 316.0
27 TraesCS7D01G220200 chr5A 92.727 220 15 1 1 219 490049302 490049083 4.990000e-82 316.0
28 TraesCS7D01G220200 chr5A 92.593 216 16 0 1 216 451457925 451458140 2.320000e-80 311.0
29 TraesCS7D01G220200 chr6B 92.273 220 16 1 1 219 712458177 712457958 2.320000e-80 311.0
30 TraesCS7D01G220200 chr6B 89.216 102 9 2 5444 5545 610024718 610024817 9.020000e-25 126.0
31 TraesCS7D01G220200 chr6B 100.000 30 0 0 4129 4158 626886416 626886387 1.000000e-03 56.5
32 TraesCS7D01G220200 chr6B 100.000 29 0 0 4100 4128 435311158 435311186 4.000000e-03 54.7
33 TraesCS7D01G220200 chr6B 96.970 33 0 1 4096 4128 515582936 515582967 4.000000e-03 54.7
34 TraesCS7D01G220200 chr4A 92.593 216 16 0 1 216 45420056 45419841 2.320000e-80 311.0
35 TraesCS7D01G220200 chr4A 86.139 202 23 5 4764 4962 9538098 9537899 6.730000e-51 213.0
36 TraesCS7D01G220200 chr2B 92.593 216 16 0 1 216 492605150 492605365 2.320000e-80 311.0
37 TraesCS7D01G220200 chr2B 90.722 97 7 2 5443 5539 547862214 547862120 2.510000e-25 128.0
38 TraesCS7D01G220200 chr2B 100.000 28 0 0 4136 4163 799026787 799026760 1.600000e-02 52.8
39 TraesCS7D01G220200 chr6D 83.721 258 33 8 5153 5405 445663229 445662976 1.440000e-57 235.0
40 TraesCS7D01G220200 chr6D 92.553 94 6 1 5445 5538 326984269 326984177 5.390000e-27 134.0
41 TraesCS7D01G220200 chr6D 100.000 31 0 0 4126 4156 63730143 63730173 3.340000e-04 58.4
42 TraesCS7D01G220200 chr5D 93.407 91 4 2 5448 5538 297738430 297738342 5.390000e-27 134.0
43 TraesCS7D01G220200 chr5D 96.875 32 0 1 4096 4127 560030122 560030092 1.600000e-02 52.8
44 TraesCS7D01G220200 chr4B 91.000 100 8 1 5453 5552 178078816 178078914 5.390000e-27 134.0
45 TraesCS7D01G220200 chr1B 92.473 93 6 1 5446 5538 345408183 345408274 1.940000e-26 132.0
46 TraesCS7D01G220200 chr2A 85.526 76 2 4 4095 4164 683725548 683725620 4.290000e-08 71.3
47 TraesCS7D01G220200 chr2A 97.059 34 1 0 4123 4156 172214459 172214492 3.340000e-04 58.4
48 TraesCS7D01G220200 chr2A 100.000 28 0 0 4100 4127 444028141 444028114 1.600000e-02 52.8
49 TraesCS7D01G220200 chr6A 100.000 29 0 0 4100 4128 390737533 390737561 4.000000e-03 54.7
50 TraesCS7D01G220200 chr3D 100.000 29 0 0 4101 4129 60800929 60800957 4.000000e-03 54.7
51 TraesCS7D01G220200 chr2D 100.000 28 0 0 4129 4156 563940419 563940392 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G220200 chr7D 180677796 180686353 8557 False 7934.900000 15804 100.000000 1 8558 2 chr7D.!!$F1 8557
1 TraesCS7D01G220200 chr7A 185634952 185643143 8191 False 2529.000000 7622 92.785800 216 8558 5 chr7A.!!$F2 8342
2 TraesCS7D01G220200 chr7B 146890945 146899399 8454 False 1744.714286 2900 93.214429 215 8558 7 chr7B.!!$F3 8343
3 TraesCS7D01G220200 chr1D 462961106 462961739 633 True 739.000000 739 87.869000 4768 5401 1 chr1D.!!$R4 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 768 0.318107 TTTTGCTCGCTTGCTTGCTC 60.318 50.000 7.80 0.00 0.00 4.26 F
1686 1737 0.182775 AAACTCATACCGATGCCCCC 59.817 55.000 0.00 0.00 32.62 5.40 F
2036 2096 0.037326 TGATGGACGTCTTGCCACTC 60.037 55.000 16.46 6.11 36.92 3.51 F
2044 2104 0.038166 GTCTTGCCACTCATTCCCCA 59.962 55.000 0.00 0.00 0.00 4.96 F
2050 2110 0.255890 CCACTCATTCCCCATCGGTT 59.744 55.000 0.00 0.00 0.00 4.44 F
2051 2111 1.488812 CCACTCATTCCCCATCGGTTA 59.511 52.381 0.00 0.00 0.00 2.85 F
2563 2625 2.031245 CGCCATTAACAAGCTCACAACA 60.031 45.455 0.00 0.00 0.00 3.33 F
4290 4401 2.280628 GTATGAACGGGCTCAAAGGAG 58.719 52.381 0.00 0.00 44.33 3.69 F
5162 5279 1.265365 GCTTCTGCTGTGTTCCTGTTC 59.735 52.381 0.00 0.00 36.03 3.18 F
5535 5660 0.035458 GCATTATGGGACGGAGGGAG 59.965 60.000 0.00 0.00 0.00 4.30 F
6556 6684 1.939934 CTTGACAAGAAAGTGGCACGA 59.060 47.619 12.71 0.00 35.82 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2022 0.034283 AGAGTCCCCGTGGTCTAGTC 60.034 60.000 0.00 0.00 29.52 2.59 R
2819 2881 1.827969 ACCCTCTTCAAGATCTCACCG 59.172 52.381 0.00 0.00 0.00 4.94 R
3287 3349 2.604046 ACGCAATGACTGAGGATACC 57.396 50.000 0.00 0.00 37.17 2.73 R
3539 3601 5.494632 TGAGTTCATGCATAATGCTTCTG 57.505 39.130 0.00 0.00 45.31 3.02 R
3595 3688 7.365741 AGAAGCATTTTTATCTTGTCACTGTG 58.634 34.615 0.17 0.17 0.00 3.66 R
4093 4189 2.691011 GGAACAGAGGGAGTAGCTAGTG 59.309 54.545 5.62 0.00 0.00 2.74 R
4496 4607 0.169672 CAAATGTCGGCAAGCTCAGG 59.830 55.000 0.00 0.00 0.00 3.86 R
5516 5641 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.000 0.00 0.00 0.00 3.56 R
6481 6609 0.250858 TGACTGGTTCCCATGCTGTG 60.251 55.000 0.00 0.00 30.82 3.66 R
6562 6690 0.463833 GGGTGCTCATTACTTCCCCG 60.464 60.000 0.00 0.00 0.00 5.73 R
8374 8890 0.451783 GAGCCCATGTAAACTTGCCG 59.548 55.000 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 9.204570 ACGAATATAGTGATACTAATTTGGTGC 57.795 33.333 0.00 0.00 33.89 5.01
118 119 8.656849 CGAATATAGTGATACTAATTTGGTGCC 58.343 37.037 0.00 0.00 33.89 5.01
119 120 9.502091 GAATATAGTGATACTAATTTGGTGCCA 57.498 33.333 0.00 0.00 33.89 4.92
123 124 9.860650 ATAGTGATACTAATTTGGTGCCATAAA 57.139 29.630 0.00 0.00 33.89 1.40
124 125 8.766994 AGTGATACTAATTTGGTGCCATAAAT 57.233 30.769 0.00 0.00 0.00 1.40
125 126 8.632679 AGTGATACTAATTTGGTGCCATAAATG 58.367 33.333 0.00 0.00 0.00 2.32
126 127 7.382218 GTGATACTAATTTGGTGCCATAAATGC 59.618 37.037 0.00 0.00 0.00 3.56
127 128 5.937975 ACTAATTTGGTGCCATAAATGCT 57.062 34.783 0.00 0.00 0.00 3.79
128 129 6.298441 ACTAATTTGGTGCCATAAATGCTT 57.702 33.333 0.00 0.00 0.00 3.91
129 130 6.710278 ACTAATTTGGTGCCATAAATGCTTT 58.290 32.000 0.00 0.00 0.00 3.51
130 131 7.167535 ACTAATTTGGTGCCATAAATGCTTTT 58.832 30.769 2.86 2.86 0.00 2.27
131 132 8.317679 ACTAATTTGGTGCCATAAATGCTTTTA 58.682 29.630 7.20 7.20 0.00 1.52
132 133 6.983474 ATTTGGTGCCATAAATGCTTTTAC 57.017 33.333 6.92 0.00 30.33 2.01
133 134 5.736951 TTGGTGCCATAAATGCTTTTACT 57.263 34.783 6.92 0.00 30.33 2.24
134 135 5.736951 TGGTGCCATAAATGCTTTTACTT 57.263 34.783 6.92 0.00 30.33 2.24
135 136 6.107901 TGGTGCCATAAATGCTTTTACTTT 57.892 33.333 6.92 0.00 30.33 2.66
136 137 6.529220 TGGTGCCATAAATGCTTTTACTTTT 58.471 32.000 6.92 0.00 30.33 2.27
137 138 6.995091 TGGTGCCATAAATGCTTTTACTTTTT 59.005 30.769 6.92 0.00 30.33 1.94
138 139 7.172361 TGGTGCCATAAATGCTTTTACTTTTTC 59.828 33.333 6.92 0.00 30.33 2.29
139 140 7.360861 GGTGCCATAAATGCTTTTACTTTTTCC 60.361 37.037 6.92 3.64 30.33 3.13
140 141 7.387673 GTGCCATAAATGCTTTTACTTTTTCCT 59.612 33.333 6.92 0.00 30.33 3.36
141 142 8.589338 TGCCATAAATGCTTTTACTTTTTCCTA 58.411 29.630 6.92 0.00 30.33 2.94
142 143 9.087424 GCCATAAATGCTTTTACTTTTTCCTAG 57.913 33.333 6.92 0.00 30.33 3.02
149 150 9.696917 ATGCTTTTACTTTTTCCTAGAAATGTG 57.303 29.630 0.00 0.00 31.74 3.21
150 151 8.141268 TGCTTTTACTTTTTCCTAGAAATGTGG 58.859 33.333 0.00 0.00 31.74 4.17
151 152 8.141909 GCTTTTACTTTTTCCTAGAAATGTGGT 58.858 33.333 0.00 0.00 31.74 4.16
157 158 9.197306 ACTTTTTCCTAGAAATGTGGTTAAAGT 57.803 29.630 0.00 0.00 34.36 2.66
202 203 9.262472 GACAAAAGCTAAATGTACACTTATTCG 57.738 33.333 0.00 0.00 0.00 3.34
203 204 7.749126 ACAAAAGCTAAATGTACACTTATTCGC 59.251 33.333 0.00 0.00 0.00 4.70
204 205 5.637104 AGCTAAATGTACACTTATTCGCG 57.363 39.130 0.00 0.00 0.00 5.87
205 206 4.506654 AGCTAAATGTACACTTATTCGCGG 59.493 41.667 6.13 0.00 0.00 6.46
206 207 4.505191 GCTAAATGTACACTTATTCGCGGA 59.495 41.667 6.13 0.00 0.00 5.54
207 208 4.852609 AAATGTACACTTATTCGCGGAC 57.147 40.909 6.13 0.00 0.00 4.79
208 209 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
209 210 1.199789 TGTACACTTATTCGCGGACGT 59.800 47.619 6.13 0.00 41.18 4.34
210 211 2.418280 TGTACACTTATTCGCGGACGTA 59.582 45.455 6.13 0.00 41.18 3.57
211 212 2.184385 ACACTTATTCGCGGACGTAG 57.816 50.000 6.13 0.00 41.18 3.51
212 213 1.202222 ACACTTATTCGCGGACGTAGG 60.202 52.381 6.13 0.00 41.18 3.18
213 214 0.383231 ACTTATTCGCGGACGTAGGG 59.617 55.000 6.13 0.00 41.18 3.53
243 245 2.030958 GTAAACGGGCGTGTGGGAG 61.031 63.158 0.00 0.00 0.00 4.30
325 340 1.336125 AGTTTGAAAGTCAGCAGCAGC 59.664 47.619 0.00 0.00 42.56 5.25
472 488 2.852281 AAACCCACCGCCCATTCCT 61.852 57.895 0.00 0.00 0.00 3.36
473 489 2.781431 AAACCCACCGCCCATTCCTC 62.781 60.000 0.00 0.00 0.00 3.71
474 490 4.506255 CCCACCGCCCATTCCTCC 62.506 72.222 0.00 0.00 0.00 4.30
475 491 4.506255 CCACCGCCCATTCCTCCC 62.506 72.222 0.00 0.00 0.00 4.30
476 492 3.411517 CACCGCCCATTCCTCCCT 61.412 66.667 0.00 0.00 0.00 4.20
575 601 4.148825 GCCGTGCATCCTCTCCGT 62.149 66.667 0.00 0.00 0.00 4.69
671 697 1.896220 TGCTTCATTCTGGAAAGCGT 58.104 45.000 0.00 0.00 0.00 5.07
742 768 0.318107 TTTTGCTCGCTTGCTTGCTC 60.318 50.000 7.80 0.00 0.00 4.26
743 769 2.448153 TTTGCTCGCTTGCTTGCTCG 62.448 55.000 7.80 0.00 0.00 5.03
744 770 4.157958 GCTCGCTTGCTTGCTCGG 62.158 66.667 0.00 0.00 0.00 4.63
798 827 2.594303 CGACCCAGCAAGCCAACA 60.594 61.111 0.00 0.00 0.00 3.33
829 858 3.867493 TGCTACTTCTCGCTGATTTGATG 59.133 43.478 0.00 0.00 0.00 3.07
830 859 4.115516 GCTACTTCTCGCTGATTTGATGA 58.884 43.478 0.00 0.00 0.00 2.92
831 860 4.749099 GCTACTTCTCGCTGATTTGATGAT 59.251 41.667 0.00 0.00 0.00 2.45
934 977 4.122143 AGAAGAGATCGAAGCTTCTTGG 57.878 45.455 23.50 9.05 44.22 3.61
982 1025 5.463061 CCCAAATCAATCTTGACAACAACAC 59.537 40.000 0.00 0.00 40.49 3.32
1315 1363 4.394712 GCTGGTACCCGCTGCAGT 62.395 66.667 20.05 0.00 0.00 4.40
1361 1409 2.872858 GAGATTGCGGTAACCATCTTCC 59.127 50.000 0.00 0.00 0.00 3.46
1368 1416 3.886123 CGGTAACCATCTTCCTTTCCAT 58.114 45.455 0.00 0.00 0.00 3.41
1436 1487 4.365514 TGGTGATGATAGTGTGGTGTTT 57.634 40.909 0.00 0.00 0.00 2.83
1437 1488 4.724399 TGGTGATGATAGTGTGGTGTTTT 58.276 39.130 0.00 0.00 0.00 2.43
1517 1568 4.717279 TGTGCTAGTTTAACCCTCCTTT 57.283 40.909 0.00 0.00 0.00 3.11
1532 1583 4.040829 CCCTCCTTTTTGCATCCTCTTTTT 59.959 41.667 0.00 0.00 0.00 1.94
1559 1610 1.275573 AGCTTCTGTCCGTAACCTTCC 59.724 52.381 0.00 0.00 0.00 3.46
1560 1611 1.001633 GCTTCTGTCCGTAACCTTCCA 59.998 52.381 0.00 0.00 0.00 3.53
1561 1612 2.354805 GCTTCTGTCCGTAACCTTCCAT 60.355 50.000 0.00 0.00 0.00 3.41
1562 1613 3.118884 GCTTCTGTCCGTAACCTTCCATA 60.119 47.826 0.00 0.00 0.00 2.74
1566 1617 4.119862 CTGTCCGTAACCTTCCATACATG 58.880 47.826 0.00 0.00 0.00 3.21
1589 1640 8.752254 CATGCATCATGTTGTTCATATTCTTTC 58.248 33.333 0.00 0.00 37.12 2.62
1624 1675 4.399618 GTGTAGTACTCATCTGAAGGCTCA 59.600 45.833 0.00 0.00 0.00 4.26
1670 1721 8.257306 TCAAATCTGGCAAATTATAGGGAAAAC 58.743 33.333 0.00 0.00 0.00 2.43
1681 1732 8.848474 AATTATAGGGAAAACTCATACCGATG 57.152 34.615 0.00 0.00 0.00 3.84
1682 1733 2.919228 AGGGAAAACTCATACCGATGC 58.081 47.619 0.00 0.00 32.62 3.91
1683 1734 1.947456 GGGAAAACTCATACCGATGCC 59.053 52.381 0.00 0.00 32.62 4.40
1685 1736 1.947456 GAAAACTCATACCGATGCCCC 59.053 52.381 0.00 0.00 32.62 5.80
1686 1737 0.182775 AAACTCATACCGATGCCCCC 59.817 55.000 0.00 0.00 32.62 5.40
1785 1844 9.905713 ACAATTAGCAGTTCCTTATCATTTCTA 57.094 29.630 0.00 0.00 0.00 2.10
1790 1849 7.810260 AGCAGTTCCTTATCATTTCTAGGAAT 58.190 34.615 0.00 0.00 45.61 3.01
1915 1975 4.336433 CCAACCCACTATCAGCTGTTTATG 59.664 45.833 14.67 8.53 0.00 1.90
1916 1976 4.844349 ACCCACTATCAGCTGTTTATGT 57.156 40.909 14.67 4.36 0.00 2.29
1918 1978 4.130118 CCCACTATCAGCTGTTTATGTCC 58.870 47.826 14.67 0.00 0.00 4.02
1999 2059 7.503902 GGGGACTCTTTTTCTATTAGCATCAAT 59.496 37.037 0.00 0.00 0.00 2.57
2000 2060 9.561069 GGGACTCTTTTTCTATTAGCATCAATA 57.439 33.333 0.00 0.00 0.00 1.90
2008 2068 9.502091 TTTTCTATTAGCATCAATATTACCGCT 57.498 29.630 9.00 9.00 0.00 5.52
2009 2069 8.703604 TTCTATTAGCATCAATATTACCGCTC 57.296 34.615 7.68 0.00 0.00 5.03
2010 2070 7.836842 TCTATTAGCATCAATATTACCGCTCA 58.163 34.615 7.68 0.00 0.00 4.26
2011 2071 6.727824 ATTAGCATCAATATTACCGCTCAC 57.272 37.500 7.68 0.00 0.00 3.51
2012 2072 4.342862 AGCATCAATATTACCGCTCACT 57.657 40.909 0.00 0.00 0.00 3.41
2013 2073 5.468540 AGCATCAATATTACCGCTCACTA 57.531 39.130 0.00 0.00 0.00 2.74
2014 2074 5.473931 AGCATCAATATTACCGCTCACTAG 58.526 41.667 0.00 0.00 0.00 2.57
2015 2075 5.011125 AGCATCAATATTACCGCTCACTAGT 59.989 40.000 0.00 0.00 0.00 2.57
2016 2076 5.696724 GCATCAATATTACCGCTCACTAGTT 59.303 40.000 0.00 0.00 0.00 2.24
2017 2077 6.202954 GCATCAATATTACCGCTCACTAGTTT 59.797 38.462 0.00 0.00 0.00 2.66
2018 2078 7.567571 CATCAATATTACCGCTCACTAGTTTG 58.432 38.462 0.00 0.00 0.00 2.93
2019 2079 6.869695 TCAATATTACCGCTCACTAGTTTGA 58.130 36.000 0.00 0.00 0.00 2.69
2020 2080 7.497595 TCAATATTACCGCTCACTAGTTTGAT 58.502 34.615 0.00 0.00 0.00 2.57
2021 2081 7.438160 TCAATATTACCGCTCACTAGTTTGATG 59.562 37.037 0.00 0.00 0.00 3.07
2022 2082 2.386661 ACCGCTCACTAGTTTGATGG 57.613 50.000 0.00 0.00 0.00 3.51
2023 2083 1.899814 ACCGCTCACTAGTTTGATGGA 59.100 47.619 0.00 0.00 0.00 3.41
2024 2084 2.271800 CCGCTCACTAGTTTGATGGAC 58.728 52.381 0.00 0.00 0.00 4.02
2025 2085 1.920574 CGCTCACTAGTTTGATGGACG 59.079 52.381 0.00 0.00 0.00 4.79
2026 2086 2.671351 CGCTCACTAGTTTGATGGACGT 60.671 50.000 0.00 0.00 0.00 4.34
2027 2087 2.924290 GCTCACTAGTTTGATGGACGTC 59.076 50.000 7.13 7.13 0.00 4.34
2028 2088 3.367498 GCTCACTAGTTTGATGGACGTCT 60.367 47.826 16.46 0.00 0.00 4.18
2029 2089 4.810790 CTCACTAGTTTGATGGACGTCTT 58.189 43.478 16.46 3.14 0.00 3.01
2030 2090 4.556233 TCACTAGTTTGATGGACGTCTTG 58.444 43.478 16.46 0.00 0.00 3.02
2031 2091 3.123621 CACTAGTTTGATGGACGTCTTGC 59.876 47.826 16.46 5.38 0.00 4.01
2032 2092 1.523758 AGTTTGATGGACGTCTTGCC 58.476 50.000 16.46 0.00 0.00 4.52
2033 2093 1.202758 AGTTTGATGGACGTCTTGCCA 60.203 47.619 16.46 5.76 38.78 4.92
2034 2094 1.069227 GTTTGATGGACGTCTTGCCAC 60.069 52.381 16.46 2.27 36.92 5.01
2035 2095 0.396435 TTGATGGACGTCTTGCCACT 59.604 50.000 16.46 0.00 36.92 4.00
2036 2096 0.037326 TGATGGACGTCTTGCCACTC 60.037 55.000 16.46 6.11 36.92 3.51
2037 2097 0.037326 GATGGACGTCTTGCCACTCA 60.037 55.000 16.46 2.22 36.92 3.41
2038 2098 0.615331 ATGGACGTCTTGCCACTCAT 59.385 50.000 16.46 4.70 36.92 2.90
2039 2099 0.396435 TGGACGTCTTGCCACTCATT 59.604 50.000 16.46 0.00 0.00 2.57
2040 2100 1.079503 GGACGTCTTGCCACTCATTC 58.920 55.000 16.46 0.00 0.00 2.67
2041 2101 1.079503 GACGTCTTGCCACTCATTCC 58.920 55.000 8.70 0.00 0.00 3.01
2042 2102 0.321653 ACGTCTTGCCACTCATTCCC 60.322 55.000 0.00 0.00 0.00 3.97
2043 2103 1.026718 CGTCTTGCCACTCATTCCCC 61.027 60.000 0.00 0.00 0.00 4.81
2044 2104 0.038166 GTCTTGCCACTCATTCCCCA 59.962 55.000 0.00 0.00 0.00 4.96
2045 2105 1.002069 TCTTGCCACTCATTCCCCAT 58.998 50.000 0.00 0.00 0.00 4.00
2046 2106 1.064463 TCTTGCCACTCATTCCCCATC 60.064 52.381 0.00 0.00 0.00 3.51
2047 2107 0.394216 TTGCCACTCATTCCCCATCG 60.394 55.000 0.00 0.00 0.00 3.84
2048 2108 1.526917 GCCACTCATTCCCCATCGG 60.527 63.158 0.00 0.00 0.00 4.18
2049 2109 1.915228 CCACTCATTCCCCATCGGT 59.085 57.895 0.00 0.00 0.00 4.69
2050 2110 0.255890 CCACTCATTCCCCATCGGTT 59.744 55.000 0.00 0.00 0.00 4.44
2051 2111 1.488812 CCACTCATTCCCCATCGGTTA 59.511 52.381 0.00 0.00 0.00 2.85
2052 2112 2.092646 CCACTCATTCCCCATCGGTTAA 60.093 50.000 0.00 0.00 0.00 2.01
2053 2113 3.435026 CCACTCATTCCCCATCGGTTAAT 60.435 47.826 0.00 0.00 0.00 1.40
2054 2114 3.815401 CACTCATTCCCCATCGGTTAATC 59.185 47.826 0.00 0.00 0.00 1.75
2055 2115 3.716872 ACTCATTCCCCATCGGTTAATCT 59.283 43.478 0.00 0.00 0.00 2.40
2056 2116 4.202367 ACTCATTCCCCATCGGTTAATCTC 60.202 45.833 0.00 0.00 0.00 2.75
2057 2117 3.714280 TCATTCCCCATCGGTTAATCTCA 59.286 43.478 0.00 0.00 0.00 3.27
2058 2118 4.165180 TCATTCCCCATCGGTTAATCTCAA 59.835 41.667 0.00 0.00 0.00 3.02
2059 2119 3.553828 TCCCCATCGGTTAATCTCAAC 57.446 47.619 0.00 0.00 0.00 3.18
2060 2120 2.841266 TCCCCATCGGTTAATCTCAACA 59.159 45.455 0.00 0.00 0.00 3.33
2061 2121 3.264706 TCCCCATCGGTTAATCTCAACAA 59.735 43.478 0.00 0.00 0.00 2.83
2062 2122 4.013728 CCCCATCGGTTAATCTCAACAAA 58.986 43.478 0.00 0.00 0.00 2.83
2063 2123 4.461081 CCCCATCGGTTAATCTCAACAAAA 59.539 41.667 0.00 0.00 0.00 2.44
2064 2124 5.047660 CCCCATCGGTTAATCTCAACAAAAA 60.048 40.000 0.00 0.00 0.00 1.94
2105 2165 2.535331 GCTTCAAACAAGCCGAACAAA 58.465 42.857 0.00 0.00 37.30 2.83
2108 2168 4.723754 GCTTCAAACAAGCCGAACAAAAAC 60.724 41.667 0.00 0.00 37.30 2.43
2133 2193 3.062763 GCCTATCTGACCGACATGATTG 58.937 50.000 0.00 0.00 0.00 2.67
2181 2242 8.321353 AGACTATGACATATTTTTCAGTGTGGA 58.679 33.333 0.00 0.00 0.00 4.02
2203 2264 6.093495 TGGACAACTATTTACATGCTGCTAAC 59.907 38.462 0.00 0.00 0.00 2.34
2206 2268 7.697691 ACAACTATTTACATGCTGCTAACATC 58.302 34.615 0.00 0.00 0.00 3.06
2379 2441 7.248976 TCCTATAGAACTATCCACATCACCAT 58.751 38.462 0.00 0.00 0.00 3.55
2382 2444 5.028549 AGAACTATCCACATCACCATCAC 57.971 43.478 0.00 0.00 0.00 3.06
2383 2445 3.459232 ACTATCCACATCACCATCACG 57.541 47.619 0.00 0.00 0.00 4.35
2407 2469 4.352600 GTGATGAAGCAGAAATCACCAG 57.647 45.455 9.45 0.00 42.78 4.00
2408 2470 4.005650 GTGATGAAGCAGAAATCACCAGA 58.994 43.478 9.45 0.00 42.78 3.86
2409 2471 4.094590 GTGATGAAGCAGAAATCACCAGAG 59.905 45.833 9.45 0.00 42.78 3.35
2428 2490 5.278364 CCAGAGAGGATAAATCAAATGCTGC 60.278 44.000 0.00 0.00 41.22 5.25
2451 2513 2.097466 CCATCATTTGTCAACCGGCTAC 59.903 50.000 0.00 0.00 0.00 3.58
2457 2519 2.552599 TGTCAACCGGCTACATCAAA 57.447 45.000 0.00 0.00 0.00 2.69
2459 2521 4.209307 TGTCAACCGGCTACATCAAATA 57.791 40.909 0.00 0.00 0.00 1.40
2542 2604 4.398044 TGGTTTGGACACTCTTGAAGAAAC 59.602 41.667 0.00 0.00 0.00 2.78
2563 2625 2.031245 CGCCATTAACAAGCTCACAACA 60.031 45.455 0.00 0.00 0.00 3.33
2568 2630 6.349280 GCCATTAACAAGCTCACAACATTCTA 60.349 38.462 0.00 0.00 0.00 2.10
2580 2642 5.819379 TCACAACATTCTAATGAGCAGGATC 59.181 40.000 9.60 0.00 39.67 3.36
2740 2802 7.259290 TGAATACACTTCTTTTCTCACCAAC 57.741 36.000 0.00 0.00 0.00 3.77
2765 2827 3.999001 CAGACTTTCTGCAATCACTAGCA 59.001 43.478 0.00 0.00 37.72 3.49
2801 2863 6.227298 ACTACTGGTCTGGATATTCAACAG 57.773 41.667 7.95 7.95 0.00 3.16
2819 2881 5.296780 TCAACAGTGGAGACTTGAAAATGAC 59.703 40.000 0.00 0.00 0.00 3.06
3037 3099 6.060788 GGCCTGAACTAAGAGATGATGAAAT 58.939 40.000 0.00 0.00 0.00 2.17
3041 3103 9.993454 CCTGAACTAAGAGATGATGAAATATCA 57.007 33.333 0.00 0.00 40.57 2.15
3287 3349 7.367285 TCCGAATCTTTGGAAATTTTACTGTG 58.633 34.615 0.00 0.00 37.80 3.66
4058 4154 9.594478 TCTCATAACTCGTTAGAAATGCATTTA 57.406 29.630 24.15 7.60 0.00 1.40
4166 4277 4.543689 ACGGAGGGAGTATTCATAACTCA 58.456 43.478 5.67 0.00 44.25 3.41
4274 4385 6.659242 AGAACTCCCAGTAACCAAAATGTATG 59.341 38.462 0.00 0.00 0.00 2.39
4290 4401 2.280628 GTATGAACGGGCTCAAAGGAG 58.719 52.381 0.00 0.00 44.33 3.69
4334 4445 6.478512 TTTTTAGGTCTTTCAAGTGGCAAT 57.521 33.333 0.00 0.00 0.00 3.56
4417 4528 4.519906 ACCCTCGGTGATGGAAATAAAT 57.480 40.909 0.00 0.00 32.98 1.40
4677 4789 6.295575 GGTCTCTATTCCCTATCATCAAGTGG 60.296 46.154 0.00 0.00 0.00 4.00
4736 4850 7.521529 CCTCACTCAAATACTACAATTGTGTG 58.478 38.462 21.42 15.67 44.05 3.82
4849 4964 5.007724 CACTGTTACCAAGAAGACCAAAGTC 59.992 44.000 0.00 0.00 43.89 3.01
5156 5273 7.412137 AAATTTATTTGCTTCTGCTGTGTTC 57.588 32.000 0.00 0.00 40.48 3.18
5162 5279 1.265365 GCTTCTGCTGTGTTCCTGTTC 59.735 52.381 0.00 0.00 36.03 3.18
5166 5283 2.061773 CTGCTGTGTTCCTGTTCTACG 58.938 52.381 0.00 0.00 0.00 3.51
5246 5363 8.703604 TTCAGTATCCTCAAATTAAAGAGTCG 57.296 34.615 0.00 0.00 0.00 4.18
5324 5447 3.426159 GCAAATCTACAATGGTGGTCACG 60.426 47.826 0.00 0.00 0.00 4.35
5461 5584 7.255906 GCTCTACTATAAAAAGGTACTCCCTCC 60.256 44.444 0.00 0.00 45.47 4.30
5477 5600 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
5497 5620 9.337396 TGTAAGATGTTTTCTGACACTACATTT 57.663 29.630 0.00 0.00 40.39 2.32
5535 5660 0.035458 GCATTATGGGACGGAGGGAG 59.965 60.000 0.00 0.00 0.00 4.30
5615 5740 6.999871 TGTCATATTTCACATGGTCATGCTAT 59.000 34.615 10.53 2.97 42.39 2.97
5672 5797 4.177026 ACATCTGTTTCGTATGACTGCTC 58.823 43.478 0.00 0.00 0.00 4.26
5698 5825 5.682471 GCTGCTTAGTCTTATGGCTGTCTTA 60.682 44.000 0.00 0.00 0.00 2.10
5956 6083 2.293170 TCCTTTGTGTCATTCAACGCA 58.707 42.857 0.00 0.00 37.86 5.24
5989 6116 8.928270 AGTAAGTTAGTTTTCGTGGATGATAG 57.072 34.615 0.00 0.00 0.00 2.08
6033 6160 4.201950 GCTGGCCATCACAATAAACTACTG 60.202 45.833 5.51 0.00 0.00 2.74
6355 6483 6.150307 TGTGATGTACAACAAGTGAAACAGTT 59.850 34.615 7.47 0.00 36.05 3.16
6356 6484 7.334671 TGTGATGTACAACAAGTGAAACAGTTA 59.665 33.333 7.47 0.00 36.05 2.24
6357 6485 7.850982 GTGATGTACAACAAGTGAAACAGTTAG 59.149 37.037 7.47 0.00 41.43 2.34
6481 6609 3.024547 TGGCTGTATGGACTACTCTGTC 58.975 50.000 0.00 0.00 36.31 3.51
6556 6684 1.939934 CTTGACAAGAAAGTGGCACGA 59.060 47.619 12.71 0.00 35.82 4.35
6562 6690 0.874607 AGAAAGTGGCACGACGTGAC 60.875 55.000 31.08 29.07 42.82 3.67
6661 6789 1.392710 AAGGTATCCCACTCGGCGAG 61.393 60.000 33.42 33.42 35.52 5.03
6681 6809 6.640907 GGCGAGTTTTTCAATGTAAGAAATGT 59.359 34.615 0.00 0.00 35.17 2.71
6703 6831 6.563422 TGTCTTTCTGGCATTATAATTGTGC 58.437 36.000 0.00 0.00 38.12 4.57
6704 6832 6.152492 TGTCTTTCTGGCATTATAATTGTGCA 59.848 34.615 10.78 0.00 40.53 4.57
6705 6833 7.147863 TGTCTTTCTGGCATTATAATTGTGCAT 60.148 33.333 10.78 0.00 40.53 3.96
6706 6834 7.168637 GTCTTTCTGGCATTATAATTGTGCATG 59.831 37.037 10.78 0.00 40.53 4.06
6707 6835 6.712179 TTCTGGCATTATAATTGTGCATGA 57.288 33.333 10.78 5.98 40.53 3.07
6708 6836 6.904463 TCTGGCATTATAATTGTGCATGAT 57.096 33.333 10.78 0.00 40.53 2.45
6709 6837 7.999450 TCTGGCATTATAATTGTGCATGATA 57.001 32.000 10.78 0.00 40.53 2.15
6710 6838 8.584063 TCTGGCATTATAATTGTGCATGATAT 57.416 30.769 10.78 0.00 40.53 1.63
6711 6839 9.027202 TCTGGCATTATAATTGTGCATGATATT 57.973 29.630 10.78 0.00 40.53 1.28
6792 6920 7.941795 TTAAACATCTTAGTATTAGCTCGGC 57.058 36.000 0.00 0.00 0.00 5.54
6793 6921 4.162096 ACATCTTAGTATTAGCTCGGCG 57.838 45.455 0.00 0.00 0.00 6.46
6794 6922 3.819337 ACATCTTAGTATTAGCTCGGCGA 59.181 43.478 10.14 10.14 0.00 5.54
6795 6923 4.083217 ACATCTTAGTATTAGCTCGGCGAG 60.083 45.833 31.40 31.40 0.00 5.03
6891 7020 1.929836 GTCGTATTCTTGCCTGCTCTG 59.070 52.381 0.00 0.00 0.00 3.35
7044 7175 4.277423 CCTCATTTTGGTTAACCGAACACT 59.723 41.667 24.44 11.24 39.06 3.55
7046 7177 3.423996 TTTTGGTTAACCGAACACTGC 57.576 42.857 24.44 0.00 39.06 4.40
7150 7281 1.619827 CATTGTGGTGAAGTGGCCATT 59.380 47.619 9.72 0.00 37.09 3.16
7169 7300 6.587608 GGCCATTCTGAATTTAGAAAGTTGTG 59.412 38.462 15.74 9.45 39.87 3.33
7236 7369 6.208402 TGCATTACACCTAAGCATGAGAAAAA 59.792 34.615 0.00 0.00 0.00 1.94
7245 7378 7.984617 ACCTAAGCATGAGAAAAATAGTCTCTC 59.015 37.037 0.00 0.00 41.80 3.20
7281 7414 4.379339 TTTGTCAAAGGCAACAACTACC 57.621 40.909 0.00 0.00 35.24 3.18
7293 7426 5.180680 GGCAACAACTACCGTCTATTTTCTT 59.819 40.000 0.00 0.00 0.00 2.52
7458 7591 2.029110 GGCATGGTTAAAGAGCTGCAAA 60.029 45.455 1.02 0.00 34.06 3.68
7618 7751 1.801178 GCCAACTTGAGAAGGAACTCG 59.199 52.381 0.00 0.00 38.49 4.18
7653 7786 2.291741 GGAGCCATTTTTCGCATCCTAG 59.708 50.000 0.00 0.00 0.00 3.02
7704 7837 2.847327 CAGAAAGCCTCTTCTGGTGA 57.153 50.000 11.26 0.00 45.73 4.02
7705 7838 3.347077 CAGAAAGCCTCTTCTGGTGAT 57.653 47.619 11.26 0.00 45.73 3.06
7767 7900 0.982852 AGGATGATTCCACGCAGGGA 60.983 55.000 0.00 0.00 45.30 4.20
7770 7903 2.511600 GATTCCACGCAGGGACGG 60.512 66.667 0.00 0.00 36.46 4.79
7792 7925 3.053831 TGGAGAACTAAAAGAAGGGCG 57.946 47.619 0.00 0.00 0.00 6.13
7846 8288 3.242543 GCCTTCATGTTAGATCACAAGCG 60.243 47.826 0.00 0.00 0.00 4.68
7909 8351 7.775397 AAATCACCATTCTTTTCAACACTTG 57.225 32.000 0.00 0.00 0.00 3.16
7915 8357 6.136071 CCATTCTTTTCAACACTTGTACTCG 58.864 40.000 0.00 0.00 0.00 4.18
7939 8381 6.517529 CGAAAGGAAAATTGATGGGGTAAACA 60.518 38.462 0.00 0.00 0.00 2.83
7940 8382 6.755542 AAGGAAAATTGATGGGGTAAACAA 57.244 33.333 0.00 0.00 0.00 2.83
8037 8553 0.099259 CGGCCATGTGTGCTGTTATG 59.901 55.000 2.24 0.00 0.00 1.90
8322 8838 7.721286 ATGCTCAAGTACAAATAGTAGCATC 57.279 36.000 0.00 0.00 35.78 3.91
8397 8913 3.287222 GCAAGTTTACATGGGCTCCATA 58.713 45.455 6.42 0.00 43.15 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 9.204570 GCACCAAATTAGTATCACTATATTCGT 57.795 33.333 0.00 0.00 29.64 3.85
92 93 8.656849 GGCACCAAATTAGTATCACTATATTCG 58.343 37.037 0.00 0.00 29.64 3.34
93 94 9.502091 TGGCACCAAATTAGTATCACTATATTC 57.498 33.333 0.00 0.00 29.64 1.75
97 98 9.860650 TTTATGGCACCAAATTAGTATCACTAT 57.139 29.630 0.00 0.00 29.64 2.12
98 99 9.860650 ATTTATGGCACCAAATTAGTATCACTA 57.139 29.630 0.00 0.00 0.00 2.74
99 100 8.632679 CATTTATGGCACCAAATTAGTATCACT 58.367 33.333 6.24 0.00 0.00 3.41
100 101 7.382218 GCATTTATGGCACCAAATTAGTATCAC 59.618 37.037 6.24 0.00 0.00 3.06
101 102 7.287466 AGCATTTATGGCACCAAATTAGTATCA 59.713 33.333 6.24 0.00 0.00 2.15
102 103 7.661040 AGCATTTATGGCACCAAATTAGTATC 58.339 34.615 6.24 0.00 0.00 2.24
103 104 7.601705 AGCATTTATGGCACCAAATTAGTAT 57.398 32.000 6.24 0.00 0.00 2.12
104 105 7.416964 AAGCATTTATGGCACCAAATTAGTA 57.583 32.000 6.24 0.00 0.00 1.82
105 106 5.937975 AGCATTTATGGCACCAAATTAGT 57.062 34.783 6.24 0.00 0.00 2.24
106 107 7.614124 AAAAGCATTTATGGCACCAAATTAG 57.386 32.000 6.24 0.00 37.28 1.73
107 108 8.317679 AGTAAAAGCATTTATGGCACCAAATTA 58.682 29.630 6.24 0.00 37.28 1.40
108 109 7.167535 AGTAAAAGCATTTATGGCACCAAATT 58.832 30.769 6.24 0.00 37.28 1.82
109 110 6.710278 AGTAAAAGCATTTATGGCACCAAAT 58.290 32.000 0.00 0.00 37.28 2.32
110 111 6.107901 AGTAAAAGCATTTATGGCACCAAA 57.892 33.333 0.00 0.00 37.28 3.28
111 112 5.736951 AGTAAAAGCATTTATGGCACCAA 57.263 34.783 0.00 0.00 37.28 3.67
112 113 5.736951 AAGTAAAAGCATTTATGGCACCA 57.263 34.783 0.00 0.00 37.28 4.17
113 114 7.360861 GGAAAAAGTAAAAGCATTTATGGCACC 60.361 37.037 0.00 0.00 37.28 5.01
114 115 7.387673 AGGAAAAAGTAAAAGCATTTATGGCAC 59.612 33.333 0.00 0.00 37.28 5.01
115 116 7.449247 AGGAAAAAGTAAAAGCATTTATGGCA 58.551 30.769 0.00 0.00 37.28 4.92
116 117 7.905604 AGGAAAAAGTAAAAGCATTTATGGC 57.094 32.000 0.00 0.00 37.28 4.40
123 124 9.696917 CACATTTCTAGGAAAAAGTAAAAGCAT 57.303 29.630 0.00 0.00 0.00 3.79
124 125 8.141268 CCACATTTCTAGGAAAAAGTAAAAGCA 58.859 33.333 0.00 0.00 0.00 3.91
125 126 8.141909 ACCACATTTCTAGGAAAAAGTAAAAGC 58.858 33.333 0.00 0.00 0.00 3.51
131 132 9.197306 ACTTTAACCACATTTCTAGGAAAAAGT 57.803 29.630 2.83 2.83 36.76 2.66
176 177 9.262472 CGAATAAGTGTACATTTAGCTTTTGTC 57.738 33.333 15.04 4.53 0.00 3.18
177 178 7.749126 GCGAATAAGTGTACATTTAGCTTTTGT 59.251 33.333 15.04 0.00 0.00 2.83
178 179 7.045612 CGCGAATAAGTGTACATTTAGCTTTTG 60.046 37.037 15.04 10.06 0.00 2.44
179 180 6.959311 CGCGAATAAGTGTACATTTAGCTTTT 59.041 34.615 15.04 5.86 0.00 2.27
180 181 6.456449 CCGCGAATAAGTGTACATTTAGCTTT 60.456 38.462 8.23 6.17 0.00 3.51
181 182 5.006358 CCGCGAATAAGTGTACATTTAGCTT 59.994 40.000 8.23 8.54 0.00 3.74
182 183 4.506654 CCGCGAATAAGTGTACATTTAGCT 59.493 41.667 8.23 6.20 0.00 3.32
183 184 4.505191 TCCGCGAATAAGTGTACATTTAGC 59.495 41.667 8.23 12.02 0.00 3.09
184 185 5.331309 CGTCCGCGAATAAGTGTACATTTAG 60.331 44.000 8.23 4.70 41.33 1.85
185 186 4.500117 CGTCCGCGAATAAGTGTACATTTA 59.500 41.667 8.23 12.58 41.33 1.40
186 187 3.305094 CGTCCGCGAATAAGTGTACATTT 59.695 43.478 8.23 8.77 41.33 2.32
187 188 2.855963 CGTCCGCGAATAAGTGTACATT 59.144 45.455 8.23 0.00 41.33 2.71
188 189 2.159338 ACGTCCGCGAATAAGTGTACAT 60.159 45.455 8.23 0.00 42.00 2.29
189 190 1.199789 ACGTCCGCGAATAAGTGTACA 59.800 47.619 8.23 0.00 42.00 2.90
190 191 1.900237 ACGTCCGCGAATAAGTGTAC 58.100 50.000 8.23 0.00 42.00 2.90
191 192 2.032054 CCTACGTCCGCGAATAAGTGTA 59.968 50.000 8.23 0.00 42.00 2.90
192 193 1.202222 CCTACGTCCGCGAATAAGTGT 60.202 52.381 8.23 0.00 42.00 3.55
193 194 1.474017 CCTACGTCCGCGAATAAGTG 58.526 55.000 8.23 0.00 42.00 3.16
194 195 0.383231 CCCTACGTCCGCGAATAAGT 59.617 55.000 8.23 3.66 42.00 2.24
195 196 0.664761 TCCCTACGTCCGCGAATAAG 59.335 55.000 8.23 0.00 42.00 1.73
196 197 0.664761 CTCCCTACGTCCGCGAATAA 59.335 55.000 8.23 0.00 42.00 1.40
197 198 0.179048 TCTCCCTACGTCCGCGAATA 60.179 55.000 8.23 0.00 42.00 1.75
198 199 0.822532 ATCTCCCTACGTCCGCGAAT 60.823 55.000 8.23 0.00 42.00 3.34
199 200 1.452651 ATCTCCCTACGTCCGCGAA 60.453 57.895 8.23 0.00 42.00 4.70
200 201 2.184830 CATCTCCCTACGTCCGCGA 61.185 63.158 8.23 0.00 42.00 5.87
201 202 2.119147 CTCATCTCCCTACGTCCGCG 62.119 65.000 0.00 0.00 44.93 6.46
202 203 1.655329 CTCATCTCCCTACGTCCGC 59.345 63.158 0.00 0.00 0.00 5.54
203 204 1.655329 GCTCATCTCCCTACGTCCG 59.345 63.158 0.00 0.00 0.00 4.79
204 205 1.102222 ACGCTCATCTCCCTACGTCC 61.102 60.000 0.00 0.00 0.00 4.79
205 206 0.029567 CACGCTCATCTCCCTACGTC 59.970 60.000 0.00 0.00 0.00 4.34
206 207 1.384989 CCACGCTCATCTCCCTACGT 61.385 60.000 0.00 0.00 0.00 3.57
207 208 1.360551 CCACGCTCATCTCCCTACG 59.639 63.158 0.00 0.00 0.00 3.51
208 209 1.688772 TACCACGCTCATCTCCCTAC 58.311 55.000 0.00 0.00 0.00 3.18
209 210 2.429610 GTTTACCACGCTCATCTCCCTA 59.570 50.000 0.00 0.00 0.00 3.53
210 211 1.207329 GTTTACCACGCTCATCTCCCT 59.793 52.381 0.00 0.00 0.00 4.20
211 212 1.653151 GTTTACCACGCTCATCTCCC 58.347 55.000 0.00 0.00 0.00 4.30
212 213 1.278238 CGTTTACCACGCTCATCTCC 58.722 55.000 0.00 0.00 43.37 3.71
238 240 1.465188 TTCTTTCTGCCCCCTCCCA 60.465 57.895 0.00 0.00 0.00 4.37
243 245 2.363018 GCCCTTCTTTCTGCCCCC 60.363 66.667 0.00 0.00 0.00 5.40
270 284 4.731612 CGCAGCTCAGGTCGTGCT 62.732 66.667 0.00 0.00 45.21 4.40
336 351 3.839432 CGTCGCCTCCCTCCTTCC 61.839 72.222 0.00 0.00 0.00 3.46
337 352 4.516195 GCGTCGCCTCCCTCCTTC 62.516 72.222 5.75 0.00 0.00 3.46
474 490 4.038804 TTGGGGGAGGGAGGGAGG 62.039 72.222 0.00 0.00 0.00 4.30
475 491 2.367512 CTTGGGGGAGGGAGGGAG 60.368 72.222 0.00 0.00 0.00 4.30
476 492 2.068841 TTTCTTGGGGGAGGGAGGGA 62.069 60.000 0.00 0.00 0.00 4.20
537 557 1.380112 GTCGAGTAGGGCTCAGGGT 60.380 63.158 0.00 0.00 44.33 4.34
671 697 1.276140 ATCCGGGGAAAACGATGGGA 61.276 55.000 0.00 0.00 0.00 4.37
674 700 0.655733 CGAATCCGGGGAAAACGATG 59.344 55.000 0.00 0.00 0.00 3.84
675 701 1.093496 GCGAATCCGGGGAAAACGAT 61.093 55.000 0.00 0.00 36.06 3.73
742 768 2.673368 GCTGAGACCACATAAAGTTCCG 59.327 50.000 0.00 0.00 0.00 4.30
743 769 3.935828 GAGCTGAGACCACATAAAGTTCC 59.064 47.826 0.00 0.00 0.00 3.62
744 770 4.826556 AGAGCTGAGACCACATAAAGTTC 58.173 43.478 0.00 0.00 0.00 3.01
798 827 2.094442 GCGAGAAGTAGCAGAAGAAGGT 60.094 50.000 0.00 0.00 0.00 3.50
829 858 2.244651 CGGCGGTTGGGATCGAATC 61.245 63.158 0.00 0.00 0.00 2.52
830 859 2.203015 CGGCGGTTGGGATCGAAT 60.203 61.111 0.00 0.00 0.00 3.34
907 946 6.930731 AGAAGCTTCGATCTCTTCTTTAACT 58.069 36.000 20.43 0.00 42.60 2.24
920 963 5.241506 TCAAATCAAACCAAGAAGCTTCGAT 59.758 36.000 20.43 12.05 0.00 3.59
934 977 3.042887 GTCTGCGTGGTTCAAATCAAAC 58.957 45.455 0.00 0.00 0.00 2.93
990 1033 3.192212 CCACAAGCCTCATTTCCTTCTTC 59.808 47.826 0.00 0.00 0.00 2.87
1103 1151 1.003580 TCCTGATCACCTTGGTCTTGC 59.996 52.381 0.00 0.00 0.00 4.01
1315 1363 2.705658 TCTTGGACTTCTTGCTCTTGGA 59.294 45.455 0.00 0.00 0.00 3.53
1517 1568 3.834489 TTGCCAAAAAGAGGATGCAAA 57.166 38.095 0.00 0.00 35.94 3.68
1532 1583 0.613260 ACGGACAGAAGCTATTGCCA 59.387 50.000 0.00 0.00 40.80 4.92
1566 1617 7.486647 AGGAAAGAATATGAACAACATGATGC 58.513 34.615 0.00 0.00 39.77 3.91
1600 1651 4.344978 AGCCTTCAGATGAGTACTACACA 58.655 43.478 0.00 0.00 0.00 3.72
1601 1652 4.399618 TGAGCCTTCAGATGAGTACTACAC 59.600 45.833 0.00 0.00 0.00 2.90
1603 1654 4.399618 TGTGAGCCTTCAGATGAGTACTAC 59.600 45.833 0.00 0.00 32.98 2.73
1604 1655 4.600062 TGTGAGCCTTCAGATGAGTACTA 58.400 43.478 0.00 0.00 32.98 1.82
1605 1656 3.435275 TGTGAGCCTTCAGATGAGTACT 58.565 45.455 0.00 0.00 32.98 2.73
1624 1675 2.645838 ACTCATGACCTGTTGCTTGT 57.354 45.000 0.00 0.00 0.00 3.16
1683 1734 2.215451 ATAGCAACTGTGGCTGGGGG 62.215 60.000 19.82 0.00 42.62 5.40
1685 1736 0.035152 TCATAGCAACTGTGGCTGGG 60.035 55.000 19.82 11.20 42.62 4.45
1686 1737 1.825090 TTCATAGCAACTGTGGCTGG 58.175 50.000 19.82 11.54 42.62 4.85
1687 1738 3.011818 TGATTCATAGCAACTGTGGCTG 58.988 45.455 19.82 5.02 42.62 4.85
1689 1740 4.337555 AGATTGATTCATAGCAACTGTGGC 59.662 41.667 0.00 0.00 31.56 5.01
1883 1943 3.844211 TGATAGTGGGTTGGAAGCTAAGT 59.156 43.478 0.00 0.00 0.00 2.24
1915 1975 7.516198 AGCCATTAAATACATCATTCAGGAC 57.484 36.000 0.00 0.00 0.00 3.85
1916 1976 9.639563 TTAAGCCATTAAATACATCATTCAGGA 57.360 29.630 0.00 0.00 0.00 3.86
1950 2010 6.338146 CCGTGGTCTAGTCTTTTATGATTCA 58.662 40.000 0.00 0.00 0.00 2.57
1955 2015 3.449737 TCCCCGTGGTCTAGTCTTTTATG 59.550 47.826 0.00 0.00 0.00 1.90
1959 2019 1.203149 AGTCCCCGTGGTCTAGTCTTT 60.203 52.381 0.00 0.00 0.00 2.52
1962 2022 0.034283 AGAGTCCCCGTGGTCTAGTC 60.034 60.000 0.00 0.00 29.52 2.59
1970 2030 4.571176 GCTAATAGAAAAAGAGTCCCCGTG 59.429 45.833 0.00 0.00 0.00 4.94
1972 2032 4.766375 TGCTAATAGAAAAAGAGTCCCCG 58.234 43.478 0.00 0.00 0.00 5.73
1999 2059 5.361571 TCCATCAAACTAGTGAGCGGTAATA 59.638 40.000 0.00 0.00 0.00 0.98
2000 2060 4.161565 TCCATCAAACTAGTGAGCGGTAAT 59.838 41.667 0.00 0.00 0.00 1.89
2001 2061 3.512329 TCCATCAAACTAGTGAGCGGTAA 59.488 43.478 0.00 0.00 0.00 2.85
2002 2062 3.093814 TCCATCAAACTAGTGAGCGGTA 58.906 45.455 0.00 0.00 0.00 4.02
2003 2063 1.899814 TCCATCAAACTAGTGAGCGGT 59.100 47.619 0.00 0.00 0.00 5.68
2004 2064 2.271800 GTCCATCAAACTAGTGAGCGG 58.728 52.381 0.00 0.00 0.00 5.52
2005 2065 1.920574 CGTCCATCAAACTAGTGAGCG 59.079 52.381 0.00 0.00 0.00 5.03
2006 2066 2.924290 GACGTCCATCAAACTAGTGAGC 59.076 50.000 3.51 0.00 0.00 4.26
2007 2067 4.442375 AGACGTCCATCAAACTAGTGAG 57.558 45.455 13.01 0.00 0.00 3.51
2008 2068 4.556233 CAAGACGTCCATCAAACTAGTGA 58.444 43.478 13.01 0.00 0.00 3.41
2009 2069 3.123621 GCAAGACGTCCATCAAACTAGTG 59.876 47.826 13.01 0.00 0.00 2.74
2010 2070 3.326747 GCAAGACGTCCATCAAACTAGT 58.673 45.455 13.01 0.00 0.00 2.57
2011 2071 2.673368 GGCAAGACGTCCATCAAACTAG 59.327 50.000 13.01 0.00 0.00 2.57
2012 2072 2.037902 TGGCAAGACGTCCATCAAACTA 59.962 45.455 13.01 0.00 0.00 2.24
2013 2073 1.202758 TGGCAAGACGTCCATCAAACT 60.203 47.619 13.01 0.00 0.00 2.66
2014 2074 1.069227 GTGGCAAGACGTCCATCAAAC 60.069 52.381 13.01 0.42 34.47 2.93
2015 2075 1.202758 AGTGGCAAGACGTCCATCAAA 60.203 47.619 13.01 0.00 34.47 2.69
2016 2076 0.396435 AGTGGCAAGACGTCCATCAA 59.604 50.000 13.01 0.00 34.47 2.57
2017 2077 0.037326 GAGTGGCAAGACGTCCATCA 60.037 55.000 13.01 3.13 34.47 3.07
2018 2078 0.037326 TGAGTGGCAAGACGTCCATC 60.037 55.000 13.01 0.67 34.47 3.51
2019 2079 0.615331 ATGAGTGGCAAGACGTCCAT 59.385 50.000 13.01 2.79 34.47 3.41
2020 2080 0.396435 AATGAGTGGCAAGACGTCCA 59.604 50.000 13.01 0.00 0.00 4.02
2021 2081 1.079503 GAATGAGTGGCAAGACGTCC 58.920 55.000 13.01 0.00 0.00 4.79
2022 2082 1.079503 GGAATGAGTGGCAAGACGTC 58.920 55.000 7.70 7.70 0.00 4.34
2023 2083 0.321653 GGGAATGAGTGGCAAGACGT 60.322 55.000 0.00 0.00 0.00 4.34
2024 2084 1.026718 GGGGAATGAGTGGCAAGACG 61.027 60.000 0.00 0.00 0.00 4.18
2025 2085 0.038166 TGGGGAATGAGTGGCAAGAC 59.962 55.000 0.00 0.00 0.00 3.01
2026 2086 1.002069 ATGGGGAATGAGTGGCAAGA 58.998 50.000 0.00 0.00 0.00 3.02
2027 2087 1.396653 GATGGGGAATGAGTGGCAAG 58.603 55.000 0.00 0.00 0.00 4.01
2028 2088 0.394216 CGATGGGGAATGAGTGGCAA 60.394 55.000 0.00 0.00 0.00 4.52
2029 2089 1.224315 CGATGGGGAATGAGTGGCA 59.776 57.895 0.00 0.00 0.00 4.92
2030 2090 1.526917 CCGATGGGGAATGAGTGGC 60.527 63.158 0.00 0.00 38.47 5.01
2031 2091 0.255890 AACCGATGGGGAATGAGTGG 59.744 55.000 0.00 0.00 39.97 4.00
2032 2092 3.275617 TTAACCGATGGGGAATGAGTG 57.724 47.619 0.00 0.00 39.97 3.51
2033 2093 3.716872 AGATTAACCGATGGGGAATGAGT 59.283 43.478 0.00 0.00 39.97 3.41
2034 2094 4.202357 TGAGATTAACCGATGGGGAATGAG 60.202 45.833 0.00 0.00 39.97 2.90
2035 2095 3.714280 TGAGATTAACCGATGGGGAATGA 59.286 43.478 0.00 0.00 39.97 2.57
2036 2096 4.085357 TGAGATTAACCGATGGGGAATG 57.915 45.455 0.00 0.00 39.97 2.67
2037 2097 4.080015 TGTTGAGATTAACCGATGGGGAAT 60.080 41.667 0.00 0.00 39.97 3.01
2038 2098 3.264706 TGTTGAGATTAACCGATGGGGAA 59.735 43.478 0.00 0.00 39.97 3.97
2039 2099 2.841266 TGTTGAGATTAACCGATGGGGA 59.159 45.455 0.00 0.00 39.97 4.81
2040 2100 3.275617 TGTTGAGATTAACCGATGGGG 57.724 47.619 0.00 0.00 43.62 4.96
2041 2101 5.637006 TTTTGTTGAGATTAACCGATGGG 57.363 39.130 0.00 0.00 40.11 4.00
2089 2149 2.028643 CCGTTTTTGTTCGGCTTGTTTG 59.971 45.455 0.00 0.00 40.28 2.93
2090 2150 2.263945 CCGTTTTTGTTCGGCTTGTTT 58.736 42.857 0.00 0.00 40.28 2.83
2098 2158 2.482721 AGATAGGCACCGTTTTTGTTCG 59.517 45.455 0.00 0.00 0.00 3.95
2102 2162 2.161609 GGTCAGATAGGCACCGTTTTTG 59.838 50.000 0.00 0.00 0.00 2.44
2105 2165 0.108329 CGGTCAGATAGGCACCGTTT 60.108 55.000 3.87 0.00 46.58 3.60
2154 2214 9.599866 CCACACTGAAAAATATGTCATAGTCTA 57.400 33.333 0.00 0.00 0.00 2.59
2155 2215 8.321353 TCCACACTGAAAAATATGTCATAGTCT 58.679 33.333 0.00 0.00 0.00 3.24
2156 2216 8.391106 GTCCACACTGAAAAATATGTCATAGTC 58.609 37.037 0.00 0.00 0.00 2.59
2157 2217 7.882791 TGTCCACACTGAAAAATATGTCATAGT 59.117 33.333 0.00 0.00 0.00 2.12
2158 2218 8.267620 TGTCCACACTGAAAAATATGTCATAG 57.732 34.615 0.00 0.00 0.00 2.23
2159 2219 8.511321 GTTGTCCACACTGAAAAATATGTCATA 58.489 33.333 0.00 0.00 0.00 2.15
2160 2220 7.231317 AGTTGTCCACACTGAAAAATATGTCAT 59.769 33.333 0.00 0.00 0.00 3.06
2161 2221 6.545666 AGTTGTCCACACTGAAAAATATGTCA 59.454 34.615 0.00 0.00 0.00 3.58
2162 2222 6.970484 AGTTGTCCACACTGAAAAATATGTC 58.030 36.000 0.00 0.00 0.00 3.06
2164 2224 9.912634 AAATAGTTGTCCACACTGAAAAATATG 57.087 29.630 0.00 0.00 26.71 1.78
2181 2242 7.554118 AGATGTTAGCAGCATGTAAATAGTTGT 59.446 33.333 0.00 0.00 39.31 3.32
2203 2264 8.961294 AAGATGAATTTCTCCTACAGAAGATG 57.039 34.615 0.00 0.00 42.37 2.90
2206 2268 8.260818 TGGTAAGATGAATTTCTCCTACAGAAG 58.739 37.037 0.00 0.00 42.37 2.85
2379 2441 3.934457 TTCTGCTTCATCACTACGTGA 57.066 42.857 0.00 0.00 46.90 4.35
2382 2444 4.033358 GGTGATTTCTGCTTCATCACTACG 59.967 45.833 10.49 0.00 44.25 3.51
2383 2445 4.937620 TGGTGATTTCTGCTTCATCACTAC 59.062 41.667 10.49 0.00 44.25 2.73
2402 2464 5.826737 AGCATTTGATTTATCCTCTCTGGTG 59.173 40.000 0.00 0.00 37.07 4.17
2407 2469 5.048852 GGAGCAGCATTTGATTTATCCTCTC 60.049 44.000 0.00 0.00 0.00 3.20
2408 2470 4.826183 GGAGCAGCATTTGATTTATCCTCT 59.174 41.667 0.00 0.00 0.00 3.69
2409 2471 4.581824 TGGAGCAGCATTTGATTTATCCTC 59.418 41.667 0.00 0.00 0.00 3.71
2428 2490 1.133025 GCCGGTTGACAAATGATGGAG 59.867 52.381 1.90 0.00 0.00 3.86
2459 2521 8.527810 TCTGTGTCTTTTGGTTTTACTGAAAAT 58.472 29.630 0.00 0.00 36.92 1.82
2542 2604 2.031245 TGTTGTGAGCTTGTTAATGGCG 60.031 45.455 0.00 0.00 0.00 5.69
2563 2625 7.344913 AGTTTCAAGATCCTGCTCATTAGAAT 58.655 34.615 0.00 0.00 0.00 2.40
2568 2630 5.879223 CACTAGTTTCAAGATCCTGCTCATT 59.121 40.000 0.00 0.00 0.00 2.57
2580 2642 6.831769 ACGACATATTTGCACTAGTTTCAAG 58.168 36.000 0.00 0.00 0.00 3.02
2622 2684 3.949754 CCTTCATGCTTAGATGCAAAGGA 59.050 43.478 12.14 0.00 46.16 3.36
2765 2827 2.644798 ACCAGTAGTCCCTTGCATCTTT 59.355 45.455 0.00 0.00 0.00 2.52
2801 2863 3.058914 CACCGTCATTTTCAAGTCTCCAC 60.059 47.826 0.00 0.00 0.00 4.02
2819 2881 1.827969 ACCCTCTTCAAGATCTCACCG 59.172 52.381 0.00 0.00 0.00 4.94
3037 3099 5.791336 AGAGATTACAAGCCGTGATGATA 57.209 39.130 0.00 0.00 0.00 2.15
3041 3103 3.535561 CCAAGAGATTACAAGCCGTGAT 58.464 45.455 0.00 0.00 0.00 3.06
3287 3349 2.604046 ACGCAATGACTGAGGATACC 57.396 50.000 0.00 0.00 37.17 2.73
3299 3361 7.795734 TGTGCAAAAACATAAATAAACGCAATG 59.204 29.630 0.00 0.00 0.00 2.82
3300 3362 7.796197 GTGTGCAAAAACATAAATAAACGCAAT 59.204 29.630 0.00 0.00 31.49 3.56
3539 3601 5.494632 TGAGTTCATGCATAATGCTTCTG 57.505 39.130 0.00 0.00 45.31 3.02
3595 3688 7.365741 AGAAGCATTTTTATCTTGTCACTGTG 58.634 34.615 0.17 0.17 0.00 3.66
4093 4189 2.691011 GGAACAGAGGGAGTAGCTAGTG 59.309 54.545 5.62 0.00 0.00 2.74
4166 4277 5.564550 AGATGGCTTCAAATGTGTTCTAGT 58.435 37.500 3.03 0.00 0.00 2.57
4305 4416 7.595130 GCCACTTGAAAGACCTAAAAATACTTG 59.405 37.037 0.00 0.00 0.00 3.16
4357 4468 9.021863 GCATCAAATTCAAAAATTTCTGCAAAA 57.978 25.926 15.71 0.00 41.96 2.44
4417 4528 8.058235 TCAAAGGGTCCATCAAAATCATATACA 58.942 33.333 0.00 0.00 0.00 2.29
4496 4607 0.169672 CAAATGTCGGCAAGCTCAGG 59.830 55.000 0.00 0.00 0.00 3.86
4677 4789 8.890718 GGTCCTAAGAGTATGATTTGGTTTTAC 58.109 37.037 0.00 0.00 0.00 2.01
4849 4964 9.177304 CATACTTAATGACAAATAAGCATGCAG 57.823 33.333 21.98 5.40 37.86 4.41
5156 5273 1.069227 GTTTGCTTGCCGTAGAACAGG 60.069 52.381 0.00 0.00 0.00 4.00
5162 5279 0.605319 TGAGGGTTTGCTTGCCGTAG 60.605 55.000 0.00 0.00 0.00 3.51
5166 5283 0.968405 TGAATGAGGGTTTGCTTGCC 59.032 50.000 0.00 0.00 0.00 4.52
5246 5363 1.828768 CTGACTCAGGATCCCAGCC 59.171 63.158 8.55 0.00 0.00 4.85
5324 5447 7.710907 TGTACTACATCATACTGGCTGAAAATC 59.289 37.037 0.00 0.00 0.00 2.17
5461 5584 7.279981 TCAGAAAACATCTTACATTATGGGACG 59.720 37.037 0.00 0.00 35.73 4.79
5477 5600 7.771183 ACACAAAATGTAGTGTCAGAAAACAT 58.229 30.769 0.00 0.00 45.16 2.71
5516 5641 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.000 0.00 0.00 0.00 3.56
5672 5797 1.202580 AGCCATAAGACTAAGCAGCCG 60.203 52.381 0.00 0.00 0.00 5.52
5698 5825 2.817844 GGATAAAAACAAGCGACCCTGT 59.182 45.455 0.00 0.00 0.00 4.00
5956 6083 7.095355 CCACGAAAACTAACTTACTTATGTGCT 60.095 37.037 0.00 0.00 0.00 4.40
5989 6116 5.050490 AGCCACATATGACGAGTTAATGTC 58.950 41.667 10.38 0.11 35.67 3.06
6083 6211 7.867403 AGTACGCAATTCACATTTTTGAAGAAT 59.133 29.630 0.00 0.00 38.87 2.40
6481 6609 0.250858 TGACTGGTTCCCATGCTGTG 60.251 55.000 0.00 0.00 30.82 3.66
6505 6633 1.417517 ACTTGTCTCTGGTGCACATCA 59.582 47.619 20.43 7.43 0.00 3.07
6556 6684 1.203994 CTCATTACTTCCCCGTCACGT 59.796 52.381 0.00 0.00 0.00 4.49
6562 6690 0.463833 GGGTGCTCATTACTTCCCCG 60.464 60.000 0.00 0.00 0.00 5.73
6681 6809 6.772360 TGCACAATTATAATGCCAGAAAGA 57.228 33.333 0.00 0.00 38.63 2.52
6766 6894 9.635520 GCCGAGCTAATACTAAGATGTTTAATA 57.364 33.333 0.00 0.00 0.00 0.98
6767 6895 7.328737 CGCCGAGCTAATACTAAGATGTTTAAT 59.671 37.037 0.00 0.00 0.00 1.40
6768 6896 6.639686 CGCCGAGCTAATACTAAGATGTTTAA 59.360 38.462 0.00 0.00 0.00 1.52
6769 6897 6.016860 TCGCCGAGCTAATACTAAGATGTTTA 60.017 38.462 0.00 0.00 0.00 2.01
6770 6898 4.982916 CGCCGAGCTAATACTAAGATGTTT 59.017 41.667 0.00 0.00 0.00 2.83
6771 6899 4.277672 TCGCCGAGCTAATACTAAGATGTT 59.722 41.667 0.00 0.00 0.00 2.71
6772 6900 3.819337 TCGCCGAGCTAATACTAAGATGT 59.181 43.478 0.00 0.00 0.00 3.06
6773 6901 4.083217 ACTCGCCGAGCTAATACTAAGATG 60.083 45.833 15.20 0.00 32.04 2.90
6774 6902 4.073549 ACTCGCCGAGCTAATACTAAGAT 58.926 43.478 15.20 0.00 32.04 2.40
6775 6903 3.474600 ACTCGCCGAGCTAATACTAAGA 58.525 45.455 15.20 0.00 32.04 2.10
6776 6904 3.900388 ACTCGCCGAGCTAATACTAAG 57.100 47.619 15.20 0.00 32.04 2.18
6777 6905 4.644103 AAACTCGCCGAGCTAATACTAA 57.356 40.909 15.20 0.00 32.04 2.24
6778 6906 4.644103 AAAACTCGCCGAGCTAATACTA 57.356 40.909 15.20 0.00 32.04 1.82
6779 6907 3.521947 AAAACTCGCCGAGCTAATACT 57.478 42.857 15.20 0.00 32.04 2.12
6860 6988 6.092259 AGGCAAGAATACGACAAGATTAACAC 59.908 38.462 0.00 0.00 0.00 3.32
6891 7020 4.229876 GTGACCAAGAAAGCAACATAAGC 58.770 43.478 0.00 0.00 0.00 3.09
7006 7135 8.960591 ACCAAAATGAGGAAATACATAGAACAG 58.039 33.333 0.00 0.00 0.00 3.16
7044 7175 5.418524 ACAAAGCAACCAAGATATATGTGCA 59.581 36.000 0.00 0.00 0.00 4.57
7046 7177 6.688385 CGAACAAAGCAACCAAGATATATGTG 59.312 38.462 0.00 0.00 0.00 3.21
7150 7281 7.227910 GTGTACCCACAACTTTCTAAATTCAGA 59.772 37.037 0.00 0.00 41.44 3.27
7169 7300 8.516234 TGTGATTGTTTTGTATAATGTGTACCC 58.484 33.333 0.00 0.00 0.00 3.69
7245 7378 8.968242 GCCTTTGACAAAACTAATGAACTAAAG 58.032 33.333 1.62 0.00 0.00 1.85
7281 7414 7.855409 TGTGACAAAATGACAAGAAAATAGACG 59.145 33.333 0.00 0.00 0.00 4.18
7293 7426 6.698008 AATCTCAGTTGTGACAAAATGACA 57.302 33.333 0.00 0.00 31.43 3.58
7349 7482 6.826231 TCGAATATGGAGCTGTGGAAATTAAA 59.174 34.615 0.00 0.00 0.00 1.52
7458 7591 4.690748 TCTTGCGTGATCTTCTTTCGATTT 59.309 37.500 0.00 0.00 0.00 2.17
7558 7691 4.150897 AGTAGGATGCGAAAAATGGCTA 57.849 40.909 0.00 0.00 0.00 3.93
7618 7751 2.385803 TGGCTCCTAGTTAGCTGGTAC 58.614 52.381 12.56 0.00 39.97 3.34
7653 7786 7.681782 ACATATATGTATGTGCACCAGCAAAAC 60.682 37.037 16.85 2.65 46.95 2.43
7679 7812 4.478206 CAGAAGAGGCTTTCTGGTGATA 57.522 45.455 21.58 0.00 46.55 2.15
7693 7826 2.681848 GGTCAATGCATCACCAGAAGAG 59.318 50.000 18.76 0.00 0.00 2.85
7703 7836 4.510038 ACTCAAAACTGGTCAATGCATC 57.490 40.909 0.00 0.00 0.00 3.91
7704 7837 4.942761 AACTCAAAACTGGTCAATGCAT 57.057 36.364 0.00 0.00 0.00 3.96
7705 7838 4.681744 GAAACTCAAAACTGGTCAATGCA 58.318 39.130 0.00 0.00 0.00 3.96
7716 7849 1.223187 TCCTCGCCGAAACTCAAAAC 58.777 50.000 0.00 0.00 0.00 2.43
7767 7900 4.386711 CCTTCTTTTAGTTCTCCAACCGT 58.613 43.478 0.00 0.00 32.22 4.83
7770 7903 3.188667 CGCCCTTCTTTTAGTTCTCCAAC 59.811 47.826 0.00 0.00 0.00 3.77
7839 8281 4.688419 CACTTGCCGGCGCTTGTG 62.688 66.667 23.90 21.78 34.48 3.33
7846 8288 3.443045 CCATGGACACTTGCCGGC 61.443 66.667 22.73 22.73 0.00 6.13
7909 8351 5.163652 CCCCATCAATTTTCCTTTCGAGTAC 60.164 44.000 0.00 0.00 0.00 2.73
7915 8357 6.764379 TGTTTACCCCATCAATTTTCCTTTC 58.236 36.000 0.00 0.00 0.00 2.62
7939 8381 9.251440 GTATAAAGGTTCTACCCCTTCAATTTT 57.749 33.333 0.00 0.00 41.47 1.82
7940 8382 7.837689 GGTATAAAGGTTCTACCCCTTCAATTT 59.162 37.037 0.00 0.00 41.47 1.82
8322 8838 2.826725 AGGAAACCTTCAGACCTACTCG 59.173 50.000 0.00 0.00 0.00 4.18
8374 8890 0.451783 GAGCCCATGTAAACTTGCCG 59.548 55.000 0.00 0.00 0.00 5.69
8397 8913 1.111277 GTTTCAAGCTGGTGGTGGTT 58.889 50.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.