Multiple sequence alignment - TraesCS7D01G219700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G219700 chr7D 100.000 7921 0 0 1 7921 180253474 180245554 0.000000e+00 14628.0
1 TraesCS7D01G219700 chr7D 88.281 128 10 2 2022 2147 180249029 180248905 1.780000e-31 148.0
2 TraesCS7D01G219700 chr7D 88.281 128 10 2 4446 4570 180251453 180251328 1.780000e-31 148.0
3 TraesCS7D01G219700 chr7D 98.507 67 0 1 4 69 179250910 179250976 5.020000e-22 117.0
4 TraesCS7D01G219700 chr7D 97.059 68 2 0 1 68 374936866 374936933 1.810000e-21 115.0
5 TraesCS7D01G219700 chr7D 100.000 28 0 0 683 710 180252765 180252792 1.400000e-02 52.8
6 TraesCS7D01G219700 chr7A 96.717 3198 70 11 64 3233 184658559 184655369 0.000000e+00 5291.0
7 TraesCS7D01G219700 chr7A 97.543 1994 38 5 4437 6428 184654486 184652502 0.000000e+00 3400.0
8 TraesCS7D01G219700 chr7A 97.794 1496 31 1 6426 7921 184652399 184650906 0.000000e+00 2579.0
9 TraesCS7D01G219700 chr7A 97.183 568 14 1 3831 4396 184655054 184654487 0.000000e+00 959.0
10 TraesCS7D01G219700 chr7A 91.517 389 19 10 3223 3608 184655418 184655041 2.530000e-144 523.0
11 TraesCS7D01G219700 chr7A 90.368 353 30 2 2537 2885 575278785 575279137 2.010000e-125 460.0
12 TraesCS7D01G219700 chr7A 87.032 401 49 3 2036 2433 575275904 575276304 4.360000e-122 449.0
13 TraesCS7D01G219700 chr7A 87.037 270 22 1 2886 3142 575279096 575279365 7.770000e-75 292.0
14 TraesCS7D01G219700 chr7A 87.446 231 18 4 4156 4383 575279358 575279580 1.020000e-63 255.0
15 TraesCS7D01G219700 chr7A 90.551 127 10 2 2022 2147 575279909 575280034 4.920000e-37 167.0
16 TraesCS7D01G219700 chr7A 88.281 128 10 2 2022 2147 184654477 184654353 1.780000e-31 148.0
17 TraesCS7D01G219700 chr7A 87.500 128 11 2 4446 4570 184656577 184656452 8.290000e-30 143.0
18 TraesCS7D01G219700 chr7A 100.000 42 0 0 2886 2927 184655758 184655717 2.370000e-10 78.7
19 TraesCS7D01G219700 chr7B 97.569 2880 65 5 5001 7878 146079142 146076266 0.000000e+00 4926.0
20 TraesCS7D01G219700 chr7B 96.019 2286 58 10 64 2321 146084578 146082298 0.000000e+00 3687.0
21 TraesCS7D01G219700 chr7B 96.251 1067 32 5 3322 4382 146081038 146079974 0.000000e+00 1742.0
22 TraesCS7D01G219700 chr7B 96.780 559 17 1 2369 2927 146082300 146081743 0.000000e+00 931.0
23 TraesCS7D01G219700 chr7B 94.404 554 21 7 4415 4966 146079854 146079309 0.000000e+00 843.0
24 TraesCS7D01G219700 chr7B 98.058 412 8 0 2844 3255 146081784 146081373 0.000000e+00 717.0
25 TraesCS7D01G219700 chr7B 84.328 134 12 2 4446 4570 146082605 146082472 1.080000e-23 122.0
26 TraesCS7D01G219700 chr7B 94.118 51 2 1 2886 2935 146081826 146081776 8.520000e-10 76.8
27 TraesCS7D01G219700 chr1B 79.741 849 85 45 3351 4154 632208386 632207580 1.170000e-147 534.0
28 TraesCS7D01G219700 chr1B 82.303 356 36 8 3838 4172 520394374 520394025 4.680000e-72 283.0
29 TraesCS7D01G219700 chr1B 85.096 208 22 7 3222 3424 520400231 520400434 3.750000e-48 204.0
30 TraesCS7D01G219700 chr1B 91.603 131 11 0 3223 3353 632208789 632208659 1.760000e-41 182.0
31 TraesCS7D01G219700 chr1B 94.828 58 0 3 3777 3834 520394489 520394435 3.940000e-13 87.9
32 TraesCS7D01G219700 chr5D 83.383 337 36 3 3838 4154 449407990 449407654 2.160000e-75 294.0
33 TraesCS7D01G219700 chr5D 87.712 236 21 6 3223 3453 449409025 449408793 1.310000e-67 268.0
34 TraesCS7D01G219700 chr5D 91.935 62 2 3 3777 3838 449408108 449408050 5.090000e-12 84.2
35 TraesCS7D01G219700 chr4A 78.113 265 41 9 4167 4414 518983771 518983507 1.380000e-32 152.0
36 TraesCS7D01G219700 chr2B 84.211 152 20 3 3223 3374 740307418 740307565 2.300000e-30 145.0
37 TraesCS7D01G219700 chr2B 80.272 147 11 8 3511 3656 583414341 583414212 2.350000e-15 95.3
38 TraesCS7D01G219700 chr5A 82.895 152 22 3 3223 3374 549402653 549402800 4.990000e-27 134.0
39 TraesCS7D01G219700 chr6A 83.221 149 18 6 3223 3370 57688801 57688943 6.450000e-26 130.0
40 TraesCS7D01G219700 chr4B 83.221 149 18 6 3223 3370 619602735 619602877 6.450000e-26 130.0
41 TraesCS7D01G219700 chr3B 82.895 152 19 6 3223 3373 24006922 24006777 6.450000e-26 130.0
42 TraesCS7D01G219700 chr3B 88.525 61 7 0 3164 3224 492798395 492798455 3.070000e-09 75.0
43 TraesCS7D01G219700 chr4D 100.000 68 0 0 4 71 357968627 357968560 8.340000e-25 126.0
44 TraesCS7D01G219700 chr3D 98.507 67 0 1 4 69 313482250 313482184 5.020000e-22 117.0
45 TraesCS7D01G219700 chr3D 95.775 71 3 0 1 71 174364333 174364403 1.810000e-21 115.0
46 TraesCS7D01G219700 chr3D 97.059 68 2 0 1 68 443902596 443902529 1.810000e-21 115.0
47 TraesCS7D01G219700 chr6D 98.462 65 1 0 4 68 293396474 293396410 1.810000e-21 115.0
48 TraesCS7D01G219700 chr6D 87.500 72 8 1 3164 3235 400542129 400542059 1.830000e-11 82.4
49 TraesCS7D01G219700 chr6B 97.059 68 2 0 4 71 686811551 686811484 1.810000e-21 115.0
50 TraesCS7D01G219700 chr2D 97.059 68 2 0 1 68 478981915 478981848 1.810000e-21 115.0
51 TraesCS7D01G219700 chr2D 92.982 57 3 1 3600 3656 495783444 495783389 1.830000e-11 82.4
52 TraesCS7D01G219700 chr1D 88.571 70 8 0 3164 3233 450583667 450583736 1.420000e-12 86.1
53 TraesCS7D01G219700 chr3A 85.915 71 9 1 3164 3234 432305167 432305236 3.070000e-09 75.0
54 TraesCS7D01G219700 chr3A 90.385 52 5 0 3184 3235 487445532 487445583 1.430000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G219700 chr7D 180245554 180253474 7920 True 14628.0000 14628 100.000000 1 7921 1 chr7D.!!$R1 7920
1 TraesCS7D01G219700 chr7A 184650906 184658559 7653 True 1640.2125 5291 94.566875 64 7921 8 chr7A.!!$R1 7857
2 TraesCS7D01G219700 chr7A 575275904 575280034 4130 False 324.6000 460 88.486800 2022 4383 5 chr7A.!!$F1 2361
3 TraesCS7D01G219700 chr7B 146076266 146084578 8312 True 1630.6000 4926 94.690875 64 7878 8 chr7B.!!$R1 7814
4 TraesCS7D01G219700 chr1B 632207580 632208789 1209 True 358.0000 534 85.672000 3223 4154 2 chr1B.!!$R2 931
5 TraesCS7D01G219700 chr5D 449407654 449409025 1371 True 215.4000 294 87.676667 3223 4154 3 chr5D.!!$R1 931

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 728 0.681243 GTTTCCATGGGTGGGAGCTC 60.681 60.000 13.02 4.71 46.06 4.09 F
2197 2237 0.830444 ACCTAGGTTCCAGCACGTCA 60.830 55.000 9.21 0.00 0.00 4.35 F
3633 7161 0.036590 TCAGCAGCAGCCATGTACAA 59.963 50.000 0.00 0.00 43.56 2.41 F
3727 7255 0.036577 CAGCAGCTAACTCAGGCACT 60.037 55.000 0.00 0.00 43.88 4.40 F
3753 7281 0.036732 TGGAAGGCAGCACCAACTAG 59.963 55.000 0.00 0.00 43.14 2.57 F
3778 7306 0.036875 AGGAAGAAGAACCAAGCCGG 59.963 55.000 0.00 0.00 42.50 6.13 F
3818 7346 0.179065 TGCTGCCGATGGAGATTCAG 60.179 55.000 0.00 0.00 0.00 3.02 F
3820 7348 0.179065 CTGCCGATGGAGATTCAGCA 60.179 55.000 0.00 0.00 0.00 4.41 F
4193 8065 0.250945 TCCTTTGTAATGGCACCGCA 60.251 50.000 0.00 0.00 0.00 5.69 F
4738 8883 0.612174 CCTGAGGGAGAGGTTGACGA 60.612 60.000 0.00 0.00 33.58 4.20 F
4759 8904 1.490069 TGGCAGGCTGCTATTATCACA 59.510 47.619 35.73 21.01 44.28 3.58 F
6100 10379 2.412089 GTGCGAGTCGTTATTGAAGCTT 59.588 45.455 15.08 0.00 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2537 4915 0.253160 ACCCTCCTCAGTATGGCCAA 60.253 55.000 10.96 0.00 36.16 4.52 R
3708 7236 0.036577 AGTGCCTGAGTTAGCTGCTG 60.037 55.000 13.43 0.00 0.00 4.41 R
4605 8748 1.683011 CCGACATTCAATGCCCTCCTT 60.683 52.381 0.00 0.00 0.00 3.36 R
4738 8883 2.107031 TGTGATAATAGCAGCCTGCCAT 59.893 45.455 14.25 1.42 46.52 4.40 R
5316 9593 4.156922 CCACTTTGGTTGTGTCAGTTAACA 59.843 41.667 8.61 0.00 33.92 2.41 R
5531 9809 4.439700 GCTTTGCAGAATCTGTATGTGCAT 60.440 41.667 12.29 0.00 43.34 3.96 R
5717 9996 7.807977 AACAACATTTAGACAAGACATGAGT 57.192 32.000 0.00 0.00 0.00 3.41 R
5850 10129 4.986034 CGCCGATTATGTTACCATCACTAA 59.014 41.667 0.00 0.00 32.29 2.24 R
5887 10166 5.009310 ACATATTGCACATATTGGCTCAGTG 59.991 40.000 0.00 0.00 0.00 3.66 R
6275 10554 4.286032 ACACACATAACCTACACCAGATGT 59.714 41.667 0.00 0.00 46.06 3.06 R
6355 10634 4.757594 ACAAAAAGCATGAACACACACAT 58.242 34.783 0.00 0.00 0.00 3.21 R
7679 12063 0.974010 TTAGTAGCCGGTGTGGAGGG 60.974 60.000 1.90 0.00 42.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.910441 ACATAAGCAAATTTTTCTTGGGATG 57.090 32.000 10.97 9.51 0.00 3.51
25 26 7.452562 ACATAAGCAAATTTTTCTTGGGATGT 58.547 30.769 10.97 9.95 0.00 3.06
26 27 7.388500 ACATAAGCAAATTTTTCTTGGGATGTG 59.612 33.333 10.97 5.18 0.00 3.21
27 28 5.294734 AGCAAATTTTTCTTGGGATGTGT 57.705 34.783 0.00 0.00 0.00 3.72
28 29 5.683681 AGCAAATTTTTCTTGGGATGTGTT 58.316 33.333 0.00 0.00 0.00 3.32
29 30 6.825610 AGCAAATTTTTCTTGGGATGTGTTA 58.174 32.000 0.00 0.00 0.00 2.41
30 31 7.452562 AGCAAATTTTTCTTGGGATGTGTTAT 58.547 30.769 0.00 0.00 0.00 1.89
31 32 7.388500 AGCAAATTTTTCTTGGGATGTGTTATG 59.612 33.333 0.00 0.00 0.00 1.90
32 33 7.173047 GCAAATTTTTCTTGGGATGTGTTATGT 59.827 33.333 0.00 0.00 0.00 2.29
33 34 9.054922 CAAATTTTTCTTGGGATGTGTTATGTT 57.945 29.630 0.00 0.00 0.00 2.71
35 36 9.705290 AATTTTTCTTGGGATGTGTTATGTTAC 57.295 29.630 0.00 0.00 0.00 2.50
36 37 8.472007 TTTTTCTTGGGATGTGTTATGTTACT 57.528 30.769 0.00 0.00 0.00 2.24
37 38 8.472007 TTTTCTTGGGATGTGTTATGTTACTT 57.528 30.769 0.00 0.00 0.00 2.24
38 39 7.447374 TTCTTGGGATGTGTTATGTTACTTG 57.553 36.000 0.00 0.00 0.00 3.16
39 40 5.414454 TCTTGGGATGTGTTATGTTACTTGC 59.586 40.000 0.00 0.00 0.00 4.01
40 41 4.917385 TGGGATGTGTTATGTTACTTGCT 58.083 39.130 0.00 0.00 0.00 3.91
41 42 6.056090 TGGGATGTGTTATGTTACTTGCTA 57.944 37.500 0.00 0.00 0.00 3.49
42 43 6.477253 TGGGATGTGTTATGTTACTTGCTAA 58.523 36.000 0.00 0.00 0.00 3.09
43 44 6.597672 TGGGATGTGTTATGTTACTTGCTAAG 59.402 38.462 0.00 0.00 0.00 2.18
44 45 6.598064 GGGATGTGTTATGTTACTTGCTAAGT 59.402 38.462 6.74 6.74 45.40 2.24
45 46 7.120726 GGGATGTGTTATGTTACTTGCTAAGTT 59.879 37.037 6.82 0.00 42.81 2.66
46 47 9.158233 GGATGTGTTATGTTACTTGCTAAGTTA 57.842 33.333 6.82 0.00 42.81 2.24
47 48 9.968743 GATGTGTTATGTTACTTGCTAAGTTAC 57.031 33.333 6.82 8.42 42.81 2.50
48 49 9.720769 ATGTGTTATGTTACTTGCTAAGTTACT 57.279 29.630 14.64 0.00 40.62 2.24
49 50 9.199982 TGTGTTATGTTACTTGCTAAGTTACTC 57.800 33.333 14.64 7.39 40.62 2.59
50 51 8.654215 GTGTTATGTTACTTGCTAAGTTACTCC 58.346 37.037 14.64 5.61 40.62 3.85
51 52 7.820872 TGTTATGTTACTTGCTAAGTTACTCCC 59.179 37.037 14.64 5.83 40.62 4.30
52 53 5.811796 TGTTACTTGCTAAGTTACTCCCA 57.188 39.130 14.64 0.00 40.62 4.37
53 54 5.544650 TGTTACTTGCTAAGTTACTCCCAC 58.455 41.667 14.64 0.00 40.62 4.61
54 55 5.306160 TGTTACTTGCTAAGTTACTCCCACT 59.694 40.000 14.64 0.00 40.62 4.00
55 56 6.494491 TGTTACTTGCTAAGTTACTCCCACTA 59.506 38.462 14.64 0.00 40.62 2.74
56 57 7.179694 TGTTACTTGCTAAGTTACTCCCACTAT 59.820 37.037 14.64 0.00 40.62 2.12
57 58 5.978814 ACTTGCTAAGTTACTCCCACTATG 58.021 41.667 0.00 0.00 39.04 2.23
58 59 5.720041 ACTTGCTAAGTTACTCCCACTATGA 59.280 40.000 0.00 0.00 39.04 2.15
59 60 5.593679 TGCTAAGTTACTCCCACTATGAC 57.406 43.478 0.00 0.00 0.00 3.06
60 61 4.404715 TGCTAAGTTACTCCCACTATGACC 59.595 45.833 0.00 0.00 0.00 4.02
61 62 4.404715 GCTAAGTTACTCCCACTATGACCA 59.595 45.833 0.00 0.00 0.00 4.02
62 63 5.452077 GCTAAGTTACTCCCACTATGACCAG 60.452 48.000 0.00 0.00 0.00 4.00
71 72 3.535561 CCACTATGACCAGCCTAAACAG 58.464 50.000 0.00 0.00 0.00 3.16
96 97 3.631250 AGAAAAGCAAAACAGGGACTCA 58.369 40.909 0.00 0.00 34.60 3.41
150 151 2.283617 CGACAATGGAGCTTCATCTTCG 59.716 50.000 18.78 18.78 0.00 3.79
247 255 4.450419 GCTCGTCCATCTCATTATTCTTGG 59.550 45.833 0.00 0.00 0.00 3.61
258 266 4.020573 TCATTATTCTTGGTGTGTCGGAGT 60.021 41.667 0.00 0.00 0.00 3.85
352 360 3.881688 CAGCTTGATTCACTAGGAATGGG 59.118 47.826 10.16 3.62 46.17 4.00
431 459 2.732597 GCGTATTCTTCTGCGTCTCAGT 60.733 50.000 0.00 0.00 43.32 3.41
436 464 3.667497 TCTTCTGCGTCTCAGTGAAAT 57.333 42.857 0.00 0.00 43.32 2.17
469 497 4.790962 CATGGAGGGCAGCTGCGT 62.791 66.667 31.19 21.58 43.26 5.24
552 580 1.679305 GGAGGGAGCGAGAGACACA 60.679 63.158 0.00 0.00 0.00 3.72
555 583 1.679305 GGGAGCGAGAGACACAGGA 60.679 63.158 0.00 0.00 0.00 3.86
578 607 0.824595 TTTGTCCACGAGTCGGGAGA 60.825 55.000 18.38 15.35 32.85 3.71
698 728 0.681243 GTTTCCATGGGTGGGAGCTC 60.681 60.000 13.02 4.71 46.06 4.09
699 729 1.863155 TTTCCATGGGTGGGAGCTCC 61.863 60.000 25.59 25.59 46.06 4.70
776 806 1.076014 GGTTTCCACGGTTCCCCAT 59.924 57.895 0.00 0.00 0.00 4.00
917 947 7.801716 TGCATTGGTATTATGTTCTAAGGTC 57.198 36.000 0.00 0.00 0.00 3.85
948 978 5.871524 TGACTTCTCATTGATGTACTTCTGC 59.128 40.000 9.87 0.00 33.86 4.26
1017 1047 6.215121 TCTTGCAATGACAATTTTTGACGAT 58.785 32.000 0.00 0.00 0.00 3.73
1078 1108 7.040409 ACAACTACTATTTTGAGAAAGCCAAGG 60.040 37.037 0.00 0.00 0.00 3.61
1654 1684 6.837992 TGTTCAGTTTGTAAACTCTGTTGAC 58.162 36.000 7.02 0.00 45.65 3.18
2009 2039 8.774586 GTTGTTGATGTTTCTGTAGAACAGTAT 58.225 33.333 6.93 0.00 46.03 2.12
2139 2177 5.299949 AGTGATTTTGCCAATTCCAGTTTC 58.700 37.500 0.00 0.00 0.00 2.78
2189 2229 1.617804 CCACCGTAGACCTAGGTTCCA 60.618 57.143 17.53 1.05 35.85 3.53
2197 2237 0.830444 ACCTAGGTTCCAGCACGTCA 60.830 55.000 9.21 0.00 0.00 4.35
2537 4915 4.256920 ACTTAGCGAGCAATTCAAGATGT 58.743 39.130 0.00 0.00 0.00 3.06
2827 5250 3.758755 AGAGTCACTTCATGTGCTTCA 57.241 42.857 0.00 0.00 45.81 3.02
2869 5292 6.767902 TCTTCTTGTCAGTTGTTCTATGCTTT 59.232 34.615 0.00 0.00 0.00 3.51
3075 5553 2.507471 AGGCTGAACTTTGATCCCTAGG 59.493 50.000 0.06 0.06 0.00 3.02
3087 5565 2.263895 TCCCTAGGCACTACCACATT 57.736 50.000 2.05 0.00 43.14 2.71
3149 5627 5.008019 GGTGTGTCATGTAATGCTATGAAGG 59.992 44.000 0.00 0.00 46.21 3.46
3190 5668 1.455587 GTGGATACGGGTACGGGGA 60.456 63.158 0.00 0.00 46.48 4.81
3191 5669 0.829182 GTGGATACGGGTACGGGGAT 60.829 60.000 0.00 0.00 46.48 3.85
3192 5670 0.776810 TGGATACGGGTACGGGGATA 59.223 55.000 0.00 0.00 46.48 2.59
3193 5671 1.177401 GGATACGGGTACGGGGATAC 58.823 60.000 0.00 0.00 46.48 2.24
3194 5672 1.547675 GGATACGGGTACGGGGATACA 60.548 57.143 0.00 0.00 46.48 2.29
3195 5673 1.815003 GATACGGGTACGGGGATACAG 59.185 57.143 0.00 0.00 46.48 2.74
3196 5674 0.178992 TACGGGTACGGGGATACAGG 60.179 60.000 0.00 0.00 46.48 4.00
3197 5675 1.152694 CGGGTACGGGGATACAGGA 60.153 63.158 0.00 0.00 39.74 3.86
3198 5676 0.541296 CGGGTACGGGGATACAGGAT 60.541 60.000 0.00 0.00 39.74 3.24
3199 5677 1.272092 CGGGTACGGGGATACAGGATA 60.272 57.143 0.00 0.00 39.74 2.59
3200 5678 2.174360 GGGTACGGGGATACAGGATAC 58.826 57.143 0.00 0.00 39.74 2.24
3201 5679 1.815003 GGTACGGGGATACAGGATACG 59.185 57.143 0.00 0.00 46.39 3.06
3202 5680 2.553028 GGTACGGGGATACAGGATACGA 60.553 54.545 0.00 0.00 46.39 3.43
3203 5681 1.613836 ACGGGGATACAGGATACGAC 58.386 55.000 0.00 0.00 46.39 4.34
3204 5682 1.133699 ACGGGGATACAGGATACGACA 60.134 52.381 0.00 0.00 46.39 4.35
3205 5683 1.958579 CGGGGATACAGGATACGACAA 59.041 52.381 0.00 0.00 46.39 3.18
3206 5684 2.561419 CGGGGATACAGGATACGACAAT 59.439 50.000 0.00 0.00 46.39 2.71
3207 5685 3.006537 CGGGGATACAGGATACGACAATT 59.993 47.826 0.00 0.00 46.39 2.32
3208 5686 4.502604 CGGGGATACAGGATACGACAATTT 60.503 45.833 0.00 0.00 46.39 1.82
3209 5687 4.995487 GGGGATACAGGATACGACAATTTC 59.005 45.833 0.00 0.00 46.39 2.17
3210 5688 5.221661 GGGGATACAGGATACGACAATTTCT 60.222 44.000 0.00 0.00 46.39 2.52
3211 5689 6.014840 GGGGATACAGGATACGACAATTTCTA 60.015 42.308 0.00 0.00 46.39 2.10
3212 5690 7.091443 GGGATACAGGATACGACAATTTCTAG 58.909 42.308 0.00 0.00 46.39 2.43
3213 5691 7.039923 GGGATACAGGATACGACAATTTCTAGA 60.040 40.741 0.00 0.00 46.39 2.43
3214 5692 8.358148 GGATACAGGATACGACAATTTCTAGAA 58.642 37.037 0.00 0.00 46.39 2.10
3215 5693 9.745880 GATACAGGATACGACAATTTCTAGAAA 57.254 33.333 19.83 19.83 46.39 2.52
3216 5694 7.829378 ACAGGATACGACAATTTCTAGAAAC 57.171 36.000 19.94 6.76 46.39 2.78
3217 5695 7.383687 ACAGGATACGACAATTTCTAGAAACA 58.616 34.615 19.94 0.00 46.39 2.83
3218 5696 7.545965 ACAGGATACGACAATTTCTAGAAACAG 59.454 37.037 19.94 16.55 46.39 3.16
3219 5697 6.535508 AGGATACGACAATTTCTAGAAACAGC 59.464 38.462 19.94 9.08 46.39 4.40
3220 5698 6.312918 GGATACGACAATTTCTAGAAACAGCA 59.687 38.462 19.94 0.00 32.51 4.41
3221 5699 7.148474 GGATACGACAATTTCTAGAAACAGCAA 60.148 37.037 19.94 3.92 32.51 3.91
3227 5705 6.430000 ACAATTTCTAGAAACAGCAATACGGT 59.570 34.615 19.94 0.00 32.51 4.83
3237 5715 1.068127 AGCAATACGGTGATACGGGAC 59.932 52.381 0.00 0.00 38.39 4.46
3378 6437 0.401738 CCCACTGGTTGTCTCCATGT 59.598 55.000 0.00 0.00 36.84 3.21
3389 6451 5.279506 GGTTGTCTCCATGTCTCTTTAGTCA 60.280 44.000 0.00 0.00 0.00 3.41
3611 7139 2.945984 GCGTTAGCAGCAACAGCA 59.054 55.556 0.00 0.00 44.35 4.41
3612 7140 1.441016 GCGTTAGCAGCAACAGCAC 60.441 57.895 0.00 0.00 44.35 4.40
3613 7141 1.154599 CGTTAGCAGCAACAGCACG 60.155 57.895 0.00 0.00 0.00 5.34
3614 7142 1.831389 CGTTAGCAGCAACAGCACGT 61.831 55.000 0.00 0.00 29.98 4.49
3615 7143 0.110644 GTTAGCAGCAACAGCACGTC 60.111 55.000 0.00 0.00 0.00 4.34
3616 7144 0.531753 TTAGCAGCAACAGCACGTCA 60.532 50.000 0.00 0.00 0.00 4.35
3617 7145 0.945743 TAGCAGCAACAGCACGTCAG 60.946 55.000 0.00 0.00 0.00 3.51
3618 7146 2.250485 CAGCAACAGCACGTCAGC 59.750 61.111 0.00 0.00 0.00 4.26
3619 7147 2.203056 AGCAACAGCACGTCAGCA 60.203 55.556 0.36 0.00 36.85 4.41
3620 7148 2.249535 AGCAACAGCACGTCAGCAG 61.250 57.895 0.36 0.00 36.85 4.24
3621 7149 2.250485 CAACAGCACGTCAGCAGC 59.750 61.111 0.36 0.00 36.85 5.25
3622 7150 2.203056 AACAGCACGTCAGCAGCA 60.203 55.556 0.00 0.00 36.85 4.41
3623 7151 2.249535 AACAGCACGTCAGCAGCAG 61.250 57.895 0.00 0.00 36.85 4.24
3624 7152 4.086178 CAGCACGTCAGCAGCAGC 62.086 66.667 0.00 0.00 42.56 5.25
3627 7155 2.745100 CACGTCAGCAGCAGCCAT 60.745 61.111 0.00 0.00 43.56 4.40
3628 7156 2.745100 ACGTCAGCAGCAGCCATG 60.745 61.111 0.00 0.00 43.56 3.66
3629 7157 2.745100 CGTCAGCAGCAGCCATGT 60.745 61.111 0.00 0.00 43.56 3.21
3630 7158 1.448365 CGTCAGCAGCAGCCATGTA 60.448 57.895 0.00 0.00 43.56 2.29
3631 7159 1.699656 CGTCAGCAGCAGCCATGTAC 61.700 60.000 0.00 0.00 43.56 2.90
3632 7160 0.674581 GTCAGCAGCAGCCATGTACA 60.675 55.000 0.00 0.00 43.56 2.90
3633 7161 0.036590 TCAGCAGCAGCCATGTACAA 59.963 50.000 0.00 0.00 43.56 2.41
3634 7162 0.883153 CAGCAGCAGCCATGTACAAA 59.117 50.000 0.00 0.00 43.56 2.83
3635 7163 1.270274 CAGCAGCAGCCATGTACAAAA 59.730 47.619 0.00 0.00 43.56 2.44
3636 7164 1.962807 AGCAGCAGCCATGTACAAAAA 59.037 42.857 0.00 0.00 43.56 1.94
3655 7183 5.659048 AAAAATGTCTTCAGTCGTGAGTC 57.341 39.130 0.00 0.00 32.98 3.36
3656 7184 4.592485 AAATGTCTTCAGTCGTGAGTCT 57.408 40.909 0.00 0.00 32.98 3.24
3657 7185 3.567576 ATGTCTTCAGTCGTGAGTCTG 57.432 47.619 0.00 0.00 46.41 3.51
3658 7186 2.298610 TGTCTTCAGTCGTGAGTCTGT 58.701 47.619 0.00 0.00 45.47 3.41
3659 7187 2.033424 TGTCTTCAGTCGTGAGTCTGTG 59.967 50.000 0.00 0.00 45.47 3.66
3660 7188 2.290916 GTCTTCAGTCGTGAGTCTGTGA 59.709 50.000 0.00 0.00 45.47 3.58
3661 7189 2.290916 TCTTCAGTCGTGAGTCTGTGAC 59.709 50.000 0.00 0.00 45.47 3.67
3662 7190 1.968704 TCAGTCGTGAGTCTGTGACT 58.031 50.000 0.00 0.00 46.42 3.41
3669 7197 4.066694 AGTCTGTGACTCGCGACT 57.933 55.556 3.71 0.00 38.71 4.18
3670 7198 3.228499 AGTCTGTGACTCGCGACTA 57.772 52.632 3.71 0.00 38.71 2.59
3671 7199 1.080298 AGTCTGTGACTCGCGACTAG 58.920 55.000 3.71 0.00 38.71 2.57
3672 7200 0.797542 GTCTGTGACTCGCGACTAGT 59.202 55.000 3.71 0.60 0.00 2.57
3673 7201 1.998315 GTCTGTGACTCGCGACTAGTA 59.002 52.381 3.71 0.00 0.00 1.82
3674 7202 2.414481 GTCTGTGACTCGCGACTAGTAA 59.586 50.000 3.71 0.00 0.00 2.24
3675 7203 3.063725 GTCTGTGACTCGCGACTAGTAAT 59.936 47.826 3.71 0.00 0.00 1.89
3676 7204 3.688185 TCTGTGACTCGCGACTAGTAATT 59.312 43.478 3.71 0.00 0.00 1.40
3677 7205 3.754955 TGTGACTCGCGACTAGTAATTG 58.245 45.455 3.71 0.00 0.00 2.32
3678 7206 2.530700 GTGACTCGCGACTAGTAATTGC 59.469 50.000 3.71 0.00 0.00 3.56
3679 7207 2.422479 TGACTCGCGACTAGTAATTGCT 59.578 45.455 3.71 0.56 0.00 3.91
3680 7208 3.624410 TGACTCGCGACTAGTAATTGCTA 59.376 43.478 3.71 3.12 0.00 3.49
3681 7209 4.212213 ACTCGCGACTAGTAATTGCTAG 57.788 45.455 24.09 24.09 42.96 3.42
3682 7210 2.974536 CTCGCGACTAGTAATTGCTAGC 59.025 50.000 25.22 17.94 41.49 3.42
3683 7211 2.052157 CGCGACTAGTAATTGCTAGCC 58.948 52.381 25.22 16.48 41.49 3.93
3684 7212 2.543031 CGCGACTAGTAATTGCTAGCCA 60.543 50.000 25.22 0.19 41.49 4.75
3685 7213 3.053455 GCGACTAGTAATTGCTAGCCAG 58.947 50.000 25.22 18.32 41.49 4.85
3699 7227 3.689414 CCAGCAAGGCAGCATCAA 58.311 55.556 4.78 0.00 36.85 2.57
3700 7228 1.214589 CCAGCAAGGCAGCATCAAC 59.785 57.895 4.78 0.00 36.85 3.18
3701 7229 1.529152 CCAGCAAGGCAGCATCAACA 61.529 55.000 4.78 0.00 36.85 3.33
3702 7230 0.109272 CAGCAAGGCAGCATCAACAG 60.109 55.000 4.78 0.00 36.85 3.16
3703 7231 1.445582 GCAAGGCAGCATCAACAGC 60.446 57.895 0.00 0.00 0.00 4.40
3704 7232 1.961378 CAAGGCAGCATCAACAGCA 59.039 52.632 0.00 0.00 0.00 4.41
3705 7233 0.109272 CAAGGCAGCATCAACAGCAG 60.109 55.000 0.00 0.00 0.00 4.24
3706 7234 1.874345 AAGGCAGCATCAACAGCAGC 61.874 55.000 0.00 0.00 42.85 5.25
3707 7235 2.341101 GGCAGCATCAACAGCAGCT 61.341 57.895 0.00 0.00 43.09 4.24
3708 7236 1.136984 GCAGCATCAACAGCAGCTC 59.863 57.895 0.00 0.00 40.76 4.09
3709 7237 1.583495 GCAGCATCAACAGCAGCTCA 61.583 55.000 0.00 0.00 40.76 4.26
3710 7238 0.448197 CAGCATCAACAGCAGCTCAG 59.552 55.000 0.00 0.00 34.61 3.35
3711 7239 1.136984 GCATCAACAGCAGCTCAGC 59.863 57.895 0.00 0.00 0.00 4.26
3712 7240 1.583495 GCATCAACAGCAGCTCAGCA 61.583 55.000 0.00 0.00 36.85 4.41
3713 7241 0.448197 CATCAACAGCAGCTCAGCAG 59.552 55.000 0.00 0.00 36.85 4.24
3723 7251 3.062585 GCTCAGCAGCTAACTCAGG 57.937 57.895 0.00 0.00 43.09 3.86
3724 7252 1.088910 GCTCAGCAGCTAACTCAGGC 61.089 60.000 0.00 0.00 43.09 4.85
3725 7253 0.248565 CTCAGCAGCTAACTCAGGCA 59.751 55.000 0.00 0.00 0.00 4.75
3726 7254 0.036952 TCAGCAGCTAACTCAGGCAC 60.037 55.000 0.00 0.00 0.00 5.01
3727 7255 0.036577 CAGCAGCTAACTCAGGCACT 60.037 55.000 0.00 0.00 43.88 4.40
3728 7256 0.689623 AGCAGCTAACTCAGGCACTT 59.310 50.000 0.00 0.00 34.60 3.16
3729 7257 1.902508 AGCAGCTAACTCAGGCACTTA 59.097 47.619 0.00 0.00 34.60 2.24
3730 7258 2.093764 AGCAGCTAACTCAGGCACTTAG 60.094 50.000 0.00 0.00 34.60 2.18
3731 7259 2.275318 CAGCTAACTCAGGCACTTAGC 58.725 52.381 0.00 0.00 41.78 3.09
3732 7260 1.134965 AGCTAACTCAGGCACTTAGCG 60.135 52.381 0.00 0.00 44.72 4.26
3733 7261 3.466540 AGCTAACTCAGGCACTTAGCGA 61.467 50.000 0.00 0.00 44.72 4.93
3734 7262 4.751116 AGCTAACTCAGGCACTTAGCGAT 61.751 47.826 0.00 0.00 44.72 4.58
3735 7263 6.756157 AGCTAACTCAGGCACTTAGCGATG 62.756 50.000 0.00 0.00 44.72 3.84
3741 7269 2.017752 GCACTTAGCGATGGAAGGC 58.982 57.895 0.00 0.00 0.00 4.35
3742 7270 0.744414 GCACTTAGCGATGGAAGGCA 60.744 55.000 0.00 0.00 0.00 4.75
3743 7271 1.293924 CACTTAGCGATGGAAGGCAG 58.706 55.000 0.00 0.00 0.00 4.85
3744 7272 0.462759 ACTTAGCGATGGAAGGCAGC 60.463 55.000 0.00 0.00 0.00 5.25
3745 7273 0.462581 CTTAGCGATGGAAGGCAGCA 60.463 55.000 0.00 0.00 0.00 4.41
3746 7274 0.744414 TTAGCGATGGAAGGCAGCAC 60.744 55.000 0.00 0.00 0.00 4.40
3747 7275 2.593468 TAGCGATGGAAGGCAGCACC 62.593 60.000 0.00 0.00 39.61 5.01
3748 7276 2.046023 CGATGGAAGGCAGCACCA 60.046 61.111 7.49 7.49 43.14 4.17
3749 7277 1.675310 CGATGGAAGGCAGCACCAA 60.675 57.895 8.83 0.00 43.14 3.67
3750 7278 1.885871 GATGGAAGGCAGCACCAAC 59.114 57.895 8.83 3.82 43.14 3.77
3751 7279 0.610232 GATGGAAGGCAGCACCAACT 60.610 55.000 8.83 0.00 43.14 3.16
3752 7280 0.698238 ATGGAAGGCAGCACCAACTA 59.302 50.000 8.83 0.00 43.14 2.24
3753 7281 0.036732 TGGAAGGCAGCACCAACTAG 59.963 55.000 0.00 0.00 43.14 2.57
3754 7282 1.308783 GGAAGGCAGCACCAACTAGC 61.309 60.000 0.00 0.00 43.14 3.42
3755 7283 0.606401 GAAGGCAGCACCAACTAGCA 60.606 55.000 0.00 0.00 43.14 3.49
3756 7284 0.890996 AAGGCAGCACCAACTAGCAC 60.891 55.000 0.00 0.00 43.14 4.40
3757 7285 2.680913 GGCAGCACCAACTAGCACG 61.681 63.158 0.00 0.00 38.86 5.34
3758 7286 2.863153 CAGCACCAACTAGCACGC 59.137 61.111 0.00 0.00 0.00 5.34
3759 7287 1.960763 CAGCACCAACTAGCACGCA 60.961 57.895 0.00 0.00 0.00 5.24
3760 7288 1.669115 AGCACCAACTAGCACGCAG 60.669 57.895 0.00 0.00 0.00 5.18
3761 7289 2.680913 GCACCAACTAGCACGCAGG 61.681 63.158 0.00 0.00 0.00 4.85
3762 7290 1.005037 CACCAACTAGCACGCAGGA 60.005 57.895 0.00 0.00 0.00 3.86
3763 7291 0.602638 CACCAACTAGCACGCAGGAA 60.603 55.000 0.00 0.00 0.00 3.36
3764 7292 0.320771 ACCAACTAGCACGCAGGAAG 60.321 55.000 0.00 0.00 0.00 3.46
3765 7293 0.037326 CCAACTAGCACGCAGGAAGA 60.037 55.000 0.00 0.00 0.00 2.87
3766 7294 1.608025 CCAACTAGCACGCAGGAAGAA 60.608 52.381 0.00 0.00 0.00 2.52
3767 7295 1.728971 CAACTAGCACGCAGGAAGAAG 59.271 52.381 0.00 0.00 0.00 2.85
3768 7296 1.257743 ACTAGCACGCAGGAAGAAGA 58.742 50.000 0.00 0.00 0.00 2.87
3769 7297 1.618837 ACTAGCACGCAGGAAGAAGAA 59.381 47.619 0.00 0.00 0.00 2.52
3770 7298 1.996191 CTAGCACGCAGGAAGAAGAAC 59.004 52.381 0.00 0.00 0.00 3.01
3771 7299 0.603975 AGCACGCAGGAAGAAGAACC 60.604 55.000 0.00 0.00 0.00 3.62
3772 7300 0.884704 GCACGCAGGAAGAAGAACCA 60.885 55.000 0.00 0.00 0.00 3.67
3773 7301 1.593196 CACGCAGGAAGAAGAACCAA 58.407 50.000 0.00 0.00 0.00 3.67
3774 7302 1.532868 CACGCAGGAAGAAGAACCAAG 59.467 52.381 0.00 0.00 0.00 3.61
3775 7303 0.519077 CGCAGGAAGAAGAACCAAGC 59.481 55.000 0.00 0.00 0.00 4.01
3776 7304 0.884514 GCAGGAAGAAGAACCAAGCC 59.115 55.000 0.00 0.00 0.00 4.35
3777 7305 1.160137 CAGGAAGAAGAACCAAGCCG 58.840 55.000 0.00 0.00 0.00 5.52
3778 7306 0.036875 AGGAAGAAGAACCAAGCCGG 59.963 55.000 0.00 0.00 42.50 6.13
3779 7307 1.587043 GGAAGAAGAACCAAGCCGGC 61.587 60.000 21.89 21.89 39.03 6.13
3780 7308 0.889186 GAAGAAGAACCAAGCCGGCA 60.889 55.000 31.54 0.00 39.03 5.69
3781 7309 0.890996 AAGAAGAACCAAGCCGGCAG 60.891 55.000 31.54 20.72 39.03 4.85
3782 7310 2.982744 GAAGAACCAAGCCGGCAGC 61.983 63.158 31.54 10.60 44.25 5.25
3791 7319 3.981308 GCCGGCAGCAGAAAGTTA 58.019 55.556 24.80 0.00 42.97 2.24
3792 7320 1.502190 GCCGGCAGCAGAAAGTTAC 59.498 57.895 24.80 0.00 42.97 2.50
3793 7321 1.923227 GCCGGCAGCAGAAAGTTACC 61.923 60.000 24.80 0.00 42.97 2.85
3794 7322 0.321653 CCGGCAGCAGAAAGTTACCT 60.322 55.000 0.00 0.00 0.00 3.08
3795 7323 1.523758 CGGCAGCAGAAAGTTACCTT 58.476 50.000 0.00 0.00 0.00 3.50
3796 7324 1.197721 CGGCAGCAGAAAGTTACCTTG 59.802 52.381 0.00 0.00 0.00 3.61
3797 7325 1.068264 GGCAGCAGAAAGTTACCTTGC 60.068 52.381 0.00 0.00 0.00 4.01
3798 7326 1.882623 GCAGCAGAAAGTTACCTTGCT 59.117 47.619 0.00 0.00 37.00 3.91
3799 7327 2.294512 GCAGCAGAAAGTTACCTTGCTT 59.705 45.455 0.00 0.00 34.02 3.91
3800 7328 3.854784 GCAGCAGAAAGTTACCTTGCTTG 60.855 47.826 0.00 0.00 34.02 4.01
3801 7329 2.294512 AGCAGAAAGTTACCTTGCTTGC 59.705 45.455 0.00 0.00 34.02 4.01
3802 7330 2.294512 GCAGAAAGTTACCTTGCTTGCT 59.705 45.455 0.00 0.00 34.02 3.91
3803 7331 3.854784 GCAGAAAGTTACCTTGCTTGCTG 60.855 47.826 7.68 7.68 46.23 4.41
3804 7332 2.294512 AGAAAGTTACCTTGCTTGCTGC 59.705 45.455 0.00 0.00 32.11 5.25
3805 7333 0.961753 AAGTTACCTTGCTTGCTGCC 59.038 50.000 0.00 0.00 42.00 4.85
3806 7334 1.210155 GTTACCTTGCTTGCTGCCG 59.790 57.895 0.00 0.00 42.00 5.69
3807 7335 1.072332 TTACCTTGCTTGCTGCCGA 59.928 52.632 0.00 0.00 42.00 5.54
3808 7336 0.322456 TTACCTTGCTTGCTGCCGAT 60.322 50.000 0.00 0.00 42.00 4.18
3809 7337 1.026182 TACCTTGCTTGCTGCCGATG 61.026 55.000 0.00 0.00 42.00 3.84
3810 7338 2.488355 CTTGCTTGCTGCCGATGG 59.512 61.111 0.00 0.00 42.00 3.51
3811 7339 2.033911 TTGCTTGCTGCCGATGGA 59.966 55.556 0.00 0.00 42.00 3.41
3812 7340 1.989966 CTTGCTTGCTGCCGATGGAG 61.990 60.000 0.00 0.00 42.00 3.86
3813 7341 2.124983 GCTTGCTGCCGATGGAGA 60.125 61.111 0.00 0.00 35.15 3.71
3814 7342 1.525535 GCTTGCTGCCGATGGAGAT 60.526 57.895 0.00 0.00 35.15 2.75
3815 7343 1.099879 GCTTGCTGCCGATGGAGATT 61.100 55.000 0.00 0.00 35.15 2.40
3816 7344 0.942962 CTTGCTGCCGATGGAGATTC 59.057 55.000 0.00 0.00 0.00 2.52
3817 7345 0.252761 TTGCTGCCGATGGAGATTCA 59.747 50.000 0.00 0.00 0.00 2.57
3818 7346 0.179065 TGCTGCCGATGGAGATTCAG 60.179 55.000 0.00 0.00 0.00 3.02
3819 7347 1.505477 GCTGCCGATGGAGATTCAGC 61.505 60.000 0.00 0.00 39.82 4.26
3820 7348 0.179065 CTGCCGATGGAGATTCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
3821 7349 0.252761 TGCCGATGGAGATTCAGCAA 59.747 50.000 0.00 0.00 0.00 3.91
3822 7350 0.659957 GCCGATGGAGATTCAGCAAC 59.340 55.000 0.00 0.00 0.00 4.17
3823 7351 2.013563 GCCGATGGAGATTCAGCAACA 61.014 52.381 0.00 0.00 0.00 3.33
3824 7352 1.938577 CCGATGGAGATTCAGCAACAG 59.061 52.381 0.00 0.00 0.00 3.16
3825 7353 1.329906 CGATGGAGATTCAGCAACAGC 59.670 52.381 0.00 0.00 0.00 4.40
3826 7354 1.329906 GATGGAGATTCAGCAACAGCG 59.670 52.381 0.00 0.00 0.00 5.18
3827 7355 0.674581 TGGAGATTCAGCAACAGCGG 60.675 55.000 0.00 0.00 0.00 5.52
3828 7356 0.674895 GGAGATTCAGCAACAGCGGT 60.675 55.000 0.00 0.00 0.00 5.68
3829 7357 0.445436 GAGATTCAGCAACAGCGGTG 59.555 55.000 14.13 14.13 35.70 4.94
3830 7358 0.957395 AGATTCAGCAACAGCGGTGG 60.957 55.000 20.20 2.78 35.11 4.61
3831 7359 2.533391 GATTCAGCAACAGCGGTGGC 62.533 60.000 20.20 8.48 44.80 5.01
3900 7752 1.158484 CGCGGGACTAGATCGAGTCA 61.158 60.000 29.63 0.00 46.51 3.41
3906 7758 3.018149 GGACTAGATCGAGTCACTGGTT 58.982 50.000 29.63 0.00 46.51 3.67
3995 7848 1.296392 CTGTGCTCCCGTCATTCCA 59.704 57.895 0.00 0.00 0.00 3.53
4193 8065 0.250945 TCCTTTGTAATGGCACCGCA 60.251 50.000 0.00 0.00 0.00 5.69
4396 8271 6.713450 TGTTCTCAAACTATGTTTCTAACCCC 59.287 38.462 0.00 0.00 36.30 4.95
4397 8272 5.812286 TCTCAAACTATGTTTCTAACCCCC 58.188 41.667 0.00 0.00 0.00 5.40
4398 8273 5.550403 TCTCAAACTATGTTTCTAACCCCCT 59.450 40.000 0.00 0.00 0.00 4.79
4399 8274 6.045106 TCTCAAACTATGTTTCTAACCCCCTT 59.955 38.462 0.00 0.00 0.00 3.95
4400 8275 6.007703 TCAAACTATGTTTCTAACCCCCTTG 58.992 40.000 0.00 0.00 0.00 3.61
4401 8276 5.853572 AACTATGTTTCTAACCCCCTTGA 57.146 39.130 0.00 0.00 0.00 3.02
4402 8277 5.437191 ACTATGTTTCTAACCCCCTTGAG 57.563 43.478 0.00 0.00 0.00 3.02
4403 8278 4.850386 ACTATGTTTCTAACCCCCTTGAGT 59.150 41.667 0.00 0.00 0.00 3.41
4404 8279 4.741928 ATGTTTCTAACCCCCTTGAGTT 57.258 40.909 0.00 0.00 0.00 3.01
4405 8280 4.529716 TGTTTCTAACCCCCTTGAGTTT 57.470 40.909 0.00 0.00 0.00 2.66
4406 8281 4.211920 TGTTTCTAACCCCCTTGAGTTTG 58.788 43.478 0.00 0.00 0.00 2.93
4407 8282 4.079672 TGTTTCTAACCCCCTTGAGTTTGA 60.080 41.667 0.00 0.00 0.00 2.69
4408 8283 4.367039 TTCTAACCCCCTTGAGTTTGAG 57.633 45.455 0.00 0.00 31.21 3.02
4409 8284 2.642807 TCTAACCCCCTTGAGTTTGAGG 59.357 50.000 0.00 0.00 0.00 3.86
4527 8670 6.531923 AGCTGCATGTGTATATCTTCTTCAT 58.468 36.000 1.02 0.00 0.00 2.57
4605 8748 3.814577 GGTCTAGCAGCGAGTTCAA 57.185 52.632 2.09 0.00 0.00 2.69
4738 8883 0.612174 CCTGAGGGAGAGGTTGACGA 60.612 60.000 0.00 0.00 33.58 4.20
4759 8904 1.490069 TGGCAGGCTGCTATTATCACA 59.510 47.619 35.73 21.01 44.28 3.58
4862 9007 6.151817 GGAATTGAACCAAGTGCTAGAAATCT 59.848 38.462 0.00 0.00 28.03 2.40
5316 9593 4.295051 GTGTTACAAATTGTTGCCGTCAT 58.705 39.130 3.17 0.00 38.39 3.06
5717 9996 9.995957 CATTGTATACATGGTGTTTCGAAATTA 57.004 29.630 14.69 3.77 0.00 1.40
5850 10129 3.377172 GGTAAAGGCAATTGCGATACAGT 59.623 43.478 26.35 12.76 43.26 3.55
5887 10166 2.610694 CGGCGATGATGGTGATGGC 61.611 63.158 0.00 0.00 0.00 4.40
5914 10193 5.771165 TGAGCCAATATGTGCAATATGTGAT 59.229 36.000 0.00 0.00 0.00 3.06
6100 10379 2.412089 GTGCGAGTCGTTATTGAAGCTT 59.588 45.455 15.08 0.00 0.00 3.74
6275 10554 7.500892 TGGTGCTATGTTTTTCTGAAGACTTTA 59.499 33.333 0.00 0.00 0.00 1.85
6413 10692 5.407995 CCTAAGTCTCTTGTTGCTTCTTCTG 59.592 44.000 0.00 0.00 0.00 3.02
6536 10920 6.467194 GGGGTTGATCCTCATACCATTTGATA 60.467 42.308 0.00 0.00 36.51 2.15
6553 10937 9.354673 CCATTTGATATTACCTTGTTACCATCT 57.645 33.333 0.00 0.00 0.00 2.90
6918 11302 7.360101 GCGAAAACTGTAGATATGAACAACACT 60.360 37.037 0.00 0.00 0.00 3.55
7341 11725 1.548081 TGCCATTTCCATGTCCTGTG 58.452 50.000 0.00 0.00 0.00 3.66
7679 12063 4.541973 TTCTTTACCCGTTTCCCTACTC 57.458 45.455 0.00 0.00 0.00 2.59
7707 12091 3.828451 ACACCGGCTACTAACTTCTGTTA 59.172 43.478 0.00 0.00 37.59 2.41
7881 12265 9.506018 TGCTAGCATGTGAACATACATAATATT 57.494 29.630 14.93 0.00 39.17 1.28
7898 12282 8.786898 ACATAATATTAAGGTTGCTAGCATGTG 58.213 33.333 20.13 10.24 0.00 3.21
7902 12286 1.442769 AGGTTGCTAGCATGTGAACG 58.557 50.000 20.13 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.388500 CACATCCCAAGAAAAATTTGCTTATGT 59.612 33.333 7.27 7.27 0.00 2.29
1 2 7.388500 ACACATCCCAAGAAAAATTTGCTTATG 59.612 33.333 0.00 2.86 0.00 1.90
2 3 7.452562 ACACATCCCAAGAAAAATTTGCTTAT 58.547 30.769 0.00 0.00 0.00 1.73
3 4 6.825610 ACACATCCCAAGAAAAATTTGCTTA 58.174 32.000 0.00 0.00 0.00 3.09
4 5 5.683681 ACACATCCCAAGAAAAATTTGCTT 58.316 33.333 0.00 0.00 0.00 3.91
5 6 5.294734 ACACATCCCAAGAAAAATTTGCT 57.705 34.783 0.00 0.00 0.00 3.91
6 7 7.173047 ACATAACACATCCCAAGAAAAATTTGC 59.827 33.333 0.00 0.00 0.00 3.68
7 8 8.606040 ACATAACACATCCCAAGAAAAATTTG 57.394 30.769 0.00 0.00 0.00 2.32
9 10 9.705290 GTAACATAACACATCCCAAGAAAAATT 57.295 29.630 0.00 0.00 0.00 1.82
10 11 9.088987 AGTAACATAACACATCCCAAGAAAAAT 57.911 29.630 0.00 0.00 0.00 1.82
11 12 8.472007 AGTAACATAACACATCCCAAGAAAAA 57.528 30.769 0.00 0.00 0.00 1.94
12 13 8.356657 CAAGTAACATAACACATCCCAAGAAAA 58.643 33.333 0.00 0.00 0.00 2.29
13 14 7.523052 GCAAGTAACATAACACATCCCAAGAAA 60.523 37.037 0.00 0.00 0.00 2.52
14 15 6.072175 GCAAGTAACATAACACATCCCAAGAA 60.072 38.462 0.00 0.00 0.00 2.52
15 16 5.414454 GCAAGTAACATAACACATCCCAAGA 59.586 40.000 0.00 0.00 0.00 3.02
16 17 5.415701 AGCAAGTAACATAACACATCCCAAG 59.584 40.000 0.00 0.00 0.00 3.61
17 18 5.321102 AGCAAGTAACATAACACATCCCAA 58.679 37.500 0.00 0.00 0.00 4.12
18 19 4.917385 AGCAAGTAACATAACACATCCCA 58.083 39.130 0.00 0.00 0.00 4.37
19 20 6.598064 ACTTAGCAAGTAACATAACACATCCC 59.402 38.462 0.44 0.00 40.69 3.85
20 21 7.611213 ACTTAGCAAGTAACATAACACATCC 57.389 36.000 0.44 0.00 40.69 3.51
21 22 9.968743 GTAACTTAGCAAGTAACATAACACATC 57.031 33.333 2.60 0.00 41.91 3.06
22 23 9.720769 AGTAACTTAGCAAGTAACATAACACAT 57.279 29.630 2.60 0.00 41.91 3.21
23 24 9.199982 GAGTAACTTAGCAAGTAACATAACACA 57.800 33.333 2.60 0.00 41.91 3.72
24 25 8.654215 GGAGTAACTTAGCAAGTAACATAACAC 58.346 37.037 2.60 0.00 41.91 3.32
25 26 7.820872 GGGAGTAACTTAGCAAGTAACATAACA 59.179 37.037 2.60 0.00 41.91 2.41
26 27 7.820872 TGGGAGTAACTTAGCAAGTAACATAAC 59.179 37.037 2.60 0.00 41.91 1.89
27 28 7.820872 GTGGGAGTAACTTAGCAAGTAACATAA 59.179 37.037 2.60 0.00 41.91 1.90
28 29 7.179694 AGTGGGAGTAACTTAGCAAGTAACATA 59.820 37.037 2.60 0.00 41.91 2.29
29 30 6.013639 AGTGGGAGTAACTTAGCAAGTAACAT 60.014 38.462 2.60 0.00 41.91 2.71
30 31 5.306160 AGTGGGAGTAACTTAGCAAGTAACA 59.694 40.000 2.60 0.00 41.91 2.41
31 32 5.791666 AGTGGGAGTAACTTAGCAAGTAAC 58.208 41.667 2.60 0.00 41.91 2.50
32 33 7.398047 TCATAGTGGGAGTAACTTAGCAAGTAA 59.602 37.037 2.60 0.00 41.91 2.24
33 34 6.893554 TCATAGTGGGAGTAACTTAGCAAGTA 59.106 38.462 2.60 0.00 41.91 2.24
34 35 5.720041 TCATAGTGGGAGTAACTTAGCAAGT 59.280 40.000 0.00 0.00 45.46 3.16
35 36 6.043411 GTCATAGTGGGAGTAACTTAGCAAG 58.957 44.000 0.00 0.00 0.00 4.01
36 37 5.105064 GGTCATAGTGGGAGTAACTTAGCAA 60.105 44.000 0.00 0.00 0.00 3.91
37 38 4.404715 GGTCATAGTGGGAGTAACTTAGCA 59.595 45.833 0.00 0.00 0.00 3.49
38 39 4.404715 TGGTCATAGTGGGAGTAACTTAGC 59.595 45.833 0.00 0.00 0.00 3.09
39 40 5.452077 GCTGGTCATAGTGGGAGTAACTTAG 60.452 48.000 0.00 0.00 0.00 2.18
40 41 4.404715 GCTGGTCATAGTGGGAGTAACTTA 59.595 45.833 0.00 0.00 0.00 2.24
41 42 3.197983 GCTGGTCATAGTGGGAGTAACTT 59.802 47.826 0.00 0.00 0.00 2.66
42 43 2.766828 GCTGGTCATAGTGGGAGTAACT 59.233 50.000 0.00 0.00 0.00 2.24
43 44 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
44 45 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
45 46 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
46 47 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
47 48 2.088104 TAGGCTGGTCATAGTGGGAG 57.912 55.000 0.00 0.00 0.00 4.30
48 49 2.504175 GTTTAGGCTGGTCATAGTGGGA 59.496 50.000 0.00 0.00 0.00 4.37
49 50 2.238646 TGTTTAGGCTGGTCATAGTGGG 59.761 50.000 0.00 0.00 0.00 4.61
50 51 3.197766 TCTGTTTAGGCTGGTCATAGTGG 59.802 47.826 0.00 0.00 0.00 4.00
51 52 4.471904 TCTGTTTAGGCTGGTCATAGTG 57.528 45.455 0.00 0.00 0.00 2.74
52 53 4.777896 TCTTCTGTTTAGGCTGGTCATAGT 59.222 41.667 0.00 0.00 0.00 2.12
53 54 5.127845 TCTCTTCTGTTTAGGCTGGTCATAG 59.872 44.000 0.00 0.00 0.00 2.23
54 55 5.023452 TCTCTTCTGTTTAGGCTGGTCATA 58.977 41.667 0.00 0.00 0.00 2.15
55 56 3.840666 TCTCTTCTGTTTAGGCTGGTCAT 59.159 43.478 0.00 0.00 0.00 3.06
56 57 3.239449 TCTCTTCTGTTTAGGCTGGTCA 58.761 45.455 0.00 0.00 0.00 4.02
57 58 3.963428 TCTCTTCTGTTTAGGCTGGTC 57.037 47.619 0.00 0.00 0.00 4.02
58 59 4.706842 TTTCTCTTCTGTTTAGGCTGGT 57.293 40.909 0.00 0.00 0.00 4.00
59 60 4.083057 GCTTTTCTCTTCTGTTTAGGCTGG 60.083 45.833 0.00 0.00 0.00 4.85
60 61 4.516698 TGCTTTTCTCTTCTGTTTAGGCTG 59.483 41.667 0.00 0.00 0.00 4.85
61 62 4.718961 TGCTTTTCTCTTCTGTTTAGGCT 58.281 39.130 0.00 0.00 0.00 4.58
62 63 5.438761 TTGCTTTTCTCTTCTGTTTAGGC 57.561 39.130 0.00 0.00 0.00 3.93
71 72 4.339530 AGTCCCTGTTTTGCTTTTCTCTTC 59.660 41.667 0.00 0.00 0.00 2.87
150 151 1.675641 AACACCAATCTGCTCGCCC 60.676 57.895 0.00 0.00 0.00 6.13
187 195 7.933033 TCGTGGGGAAACTAATATTTATGGTAC 59.067 37.037 0.00 0.00 0.00 3.34
247 255 1.270094 TGGTGATTGACTCCGACACAC 60.270 52.381 0.00 0.00 35.17 3.82
352 360 3.047280 TTGACCACATGGCGCGAC 61.047 61.111 12.10 8.22 39.32 5.19
431 459 2.030571 GCTCCATGCCATCCCATTTCA 61.031 52.381 0.00 0.00 35.15 2.69
552 580 2.806244 CGACTCGTGGACAAATTTTCCT 59.194 45.455 15.75 1.60 33.84 3.36
555 583 1.877443 CCCGACTCGTGGACAAATTTT 59.123 47.619 0.00 0.00 0.00 1.82
578 607 1.677820 CCCCGAGCCAGAAATAAACGT 60.678 52.381 0.00 0.00 0.00 3.99
698 728 1.696063 CTAGCAAATCCATGGGTGGG 58.304 55.000 13.02 1.34 46.06 4.61
699 729 4.363086 ACCCTAGCAAATCCATGGGTGG 62.363 54.545 13.02 2.45 45.22 4.61
700 730 1.063717 ACCCTAGCAAATCCATGGGTG 60.064 52.381 13.02 9.17 45.22 4.61
737 767 3.506067 CCAGTAAGGGATTGTTTGGTGTC 59.494 47.826 0.00 0.00 0.00 3.67
776 806 4.079844 TCAACTCTTGGGCCATATGAATGA 60.080 41.667 7.26 10.58 34.84 2.57
917 947 8.509690 AGTACATCAATGAGAAGTCACAAATTG 58.490 33.333 0.00 0.00 34.75 2.32
939 969 2.475487 GTCACTGGAAACGCAGAAGTAC 59.525 50.000 0.00 0.00 0.00 2.73
948 978 1.068588 TCACTGGAGTCACTGGAAACG 59.931 52.381 0.00 0.00 0.00 3.60
1017 1047 0.533531 GTGGCTCCGCATCATCATCA 60.534 55.000 0.00 0.00 0.00 3.07
1078 1108 3.542310 GTGCTGAAACAAACAAACTCGTC 59.458 43.478 0.00 0.00 0.00 4.20
1654 1684 7.102346 AGGAATCATATGAAAATAGAGCGAGG 58.898 38.462 9.99 0.00 0.00 4.63
1688 1718 1.684450 TCAGCTCGACAAAGTGTGGTA 59.316 47.619 0.00 0.00 0.00 3.25
1722 1752 6.472887 AGTAATACTAGCTTGCCAAAGTTCA 58.527 36.000 0.00 0.00 35.69 3.18
2139 2177 5.276868 GCATAGCTCTGTTACCATGTTAACG 60.277 44.000 8.42 4.25 0.00 3.18
2537 4915 0.253160 ACCCTCCTCAGTATGGCCAA 60.253 55.000 10.96 0.00 36.16 4.52
2827 5250 4.375313 AGAAGATGTCCCCCTCAAGTATT 58.625 43.478 0.00 0.00 0.00 1.89
2869 5292 3.779183 AGAAGATTGGAGCTGATTGGAGA 59.221 43.478 0.00 0.00 0.00 3.71
3075 5553 6.403636 CCAAACAATCTCTAATGTGGTAGTGC 60.404 42.308 0.00 0.00 0.00 4.40
3087 5565 3.751175 CCAACGAAGCCAAACAATCTCTA 59.249 43.478 0.00 0.00 0.00 2.43
3149 5627 3.895232 ATCAGTGTCACTGTATGGGTC 57.105 47.619 27.97 0.00 46.03 4.46
3190 5668 9.530633 GTTTCTAGAAATTGTCGTATCCTGTAT 57.469 33.333 20.41 0.00 32.36 2.29
3191 5669 8.525316 TGTTTCTAGAAATTGTCGTATCCTGTA 58.475 33.333 20.41 0.00 32.36 2.74
3192 5670 7.383687 TGTTTCTAGAAATTGTCGTATCCTGT 58.616 34.615 20.41 0.00 32.36 4.00
3193 5671 7.464710 GCTGTTTCTAGAAATTGTCGTATCCTG 60.465 40.741 20.41 8.82 32.36 3.86
3194 5672 6.535508 GCTGTTTCTAGAAATTGTCGTATCCT 59.464 38.462 20.41 0.00 32.36 3.24
3195 5673 6.312918 TGCTGTTTCTAGAAATTGTCGTATCC 59.687 38.462 20.41 4.92 32.36 2.59
3196 5674 7.290857 TGCTGTTTCTAGAAATTGTCGTATC 57.709 36.000 20.41 5.59 32.36 2.24
3197 5675 7.667043 TTGCTGTTTCTAGAAATTGTCGTAT 57.333 32.000 20.41 0.00 32.36 3.06
3198 5676 7.667043 ATTGCTGTTTCTAGAAATTGTCGTA 57.333 32.000 20.41 5.33 32.36 3.43
3199 5677 6.560253 ATTGCTGTTTCTAGAAATTGTCGT 57.440 33.333 20.41 4.57 32.36 4.34
3200 5678 6.678663 CGTATTGCTGTTTCTAGAAATTGTCG 59.321 38.462 20.41 12.81 32.36 4.35
3201 5679 6.961554 CCGTATTGCTGTTTCTAGAAATTGTC 59.038 38.462 20.41 8.65 32.36 3.18
3202 5680 6.430000 ACCGTATTGCTGTTTCTAGAAATTGT 59.570 34.615 20.41 7.28 32.36 2.71
3203 5681 6.742718 CACCGTATTGCTGTTTCTAGAAATTG 59.257 38.462 20.41 16.08 32.36 2.32
3204 5682 6.653320 TCACCGTATTGCTGTTTCTAGAAATT 59.347 34.615 20.41 5.39 32.36 1.82
3205 5683 6.170506 TCACCGTATTGCTGTTTCTAGAAAT 58.829 36.000 20.41 6.59 32.36 2.17
3206 5684 5.543714 TCACCGTATTGCTGTTTCTAGAAA 58.456 37.500 13.99 13.99 0.00 2.52
3207 5685 5.142061 TCACCGTATTGCTGTTTCTAGAA 57.858 39.130 0.00 0.00 0.00 2.10
3208 5686 4.794278 TCACCGTATTGCTGTTTCTAGA 57.206 40.909 0.00 0.00 0.00 2.43
3209 5687 5.173312 CGTATCACCGTATTGCTGTTTCTAG 59.827 44.000 0.00 0.00 0.00 2.43
3210 5688 5.038683 CGTATCACCGTATTGCTGTTTCTA 58.961 41.667 0.00 0.00 0.00 2.10
3211 5689 3.863424 CGTATCACCGTATTGCTGTTTCT 59.137 43.478 0.00 0.00 0.00 2.52
3212 5690 3.000925 CCGTATCACCGTATTGCTGTTTC 59.999 47.826 0.00 0.00 0.00 2.78
3213 5691 2.933906 CCGTATCACCGTATTGCTGTTT 59.066 45.455 0.00 0.00 0.00 2.83
3214 5692 2.546778 CCGTATCACCGTATTGCTGTT 58.453 47.619 0.00 0.00 0.00 3.16
3215 5693 1.202486 CCCGTATCACCGTATTGCTGT 60.202 52.381 0.00 0.00 0.00 4.40
3216 5694 1.067974 TCCCGTATCACCGTATTGCTG 59.932 52.381 0.00 0.00 0.00 4.41
3217 5695 1.068127 GTCCCGTATCACCGTATTGCT 59.932 52.381 0.00 0.00 0.00 3.91
3218 5696 1.202440 TGTCCCGTATCACCGTATTGC 60.202 52.381 0.00 0.00 0.00 3.56
3219 5697 2.466846 GTGTCCCGTATCACCGTATTG 58.533 52.381 0.00 0.00 0.00 1.90
3220 5698 1.066002 CGTGTCCCGTATCACCGTATT 59.934 52.381 0.00 0.00 0.00 1.89
3221 5699 0.664761 CGTGTCCCGTATCACCGTAT 59.335 55.000 0.00 0.00 0.00 3.06
3227 5705 0.250793 AATTGCCGTGTCCCGTATCA 59.749 50.000 0.00 0.00 33.66 2.15
3237 5715 3.058293 TGCTGTTTCTAGAAATTGCCGTG 60.058 43.478 27.32 13.27 33.60 4.94
3598 7126 0.945743 CTGACGTGCTGTTGCTGCTA 60.946 55.000 0.00 0.00 40.48 3.49
3599 7127 2.203056 TGACGTGCTGTTGCTGCT 60.203 55.556 0.00 0.00 40.48 4.24
3600 7128 2.250485 CTGACGTGCTGTTGCTGC 59.750 61.111 0.00 0.00 40.48 5.25
3601 7129 2.250485 GCTGACGTGCTGTTGCTG 59.750 61.111 0.00 0.00 40.48 4.41
3602 7130 2.203056 TGCTGACGTGCTGTTGCT 60.203 55.556 0.00 0.00 40.48 3.91
3603 7131 2.250485 CTGCTGACGTGCTGTTGC 59.750 61.111 0.00 0.00 40.20 4.17
3604 7132 2.250485 GCTGCTGACGTGCTGTTG 59.750 61.111 0.00 0.00 34.93 3.33
3605 7133 2.203056 TGCTGCTGACGTGCTGTT 60.203 55.556 0.00 0.00 34.93 3.16
3606 7134 2.664185 CTGCTGCTGACGTGCTGT 60.664 61.111 0.00 0.00 34.93 4.40
3607 7135 4.086178 GCTGCTGCTGACGTGCTG 62.086 66.667 10.92 0.00 36.03 4.41
3610 7138 2.745100 ATGGCTGCTGCTGACGTG 60.745 61.111 15.64 0.00 39.59 4.49
3611 7139 2.171209 TACATGGCTGCTGCTGACGT 62.171 55.000 15.64 5.95 39.59 4.34
3612 7140 1.448365 TACATGGCTGCTGCTGACG 60.448 57.895 15.64 4.66 39.59 4.35
3613 7141 0.674581 TGTACATGGCTGCTGCTGAC 60.675 55.000 15.64 8.18 39.59 3.51
3614 7142 0.036590 TTGTACATGGCTGCTGCTGA 59.963 50.000 15.64 3.00 39.59 4.26
3615 7143 0.883153 TTTGTACATGGCTGCTGCTG 59.117 50.000 15.64 9.24 39.59 4.41
3616 7144 1.619654 TTTTGTACATGGCTGCTGCT 58.380 45.000 15.64 0.00 39.59 4.24
3617 7145 2.437200 TTTTTGTACATGGCTGCTGC 57.563 45.000 7.10 7.10 38.76 5.25
3633 7161 5.235186 CAGACTCACGACTGAAGACATTTTT 59.765 40.000 0.00 0.00 35.38 1.94
3634 7162 4.747108 CAGACTCACGACTGAAGACATTTT 59.253 41.667 0.00 0.00 35.38 1.82
3635 7163 4.202161 ACAGACTCACGACTGAAGACATTT 60.202 41.667 0.00 0.00 36.60 2.32
3636 7164 3.319405 ACAGACTCACGACTGAAGACATT 59.681 43.478 0.00 0.00 36.60 2.71
3637 7165 2.887783 ACAGACTCACGACTGAAGACAT 59.112 45.455 0.00 0.00 36.60 3.06
3638 7166 2.033424 CACAGACTCACGACTGAAGACA 59.967 50.000 0.00 0.00 36.60 3.41
3639 7167 2.290916 TCACAGACTCACGACTGAAGAC 59.709 50.000 0.00 0.00 36.60 3.01
3640 7168 2.290916 GTCACAGACTCACGACTGAAGA 59.709 50.000 0.00 0.00 36.60 2.87
3641 7169 2.292016 AGTCACAGACTCACGACTGAAG 59.708 50.000 0.00 0.00 38.71 3.02
3642 7170 2.298610 AGTCACAGACTCACGACTGAA 58.701 47.619 0.00 0.00 38.71 3.02
3643 7171 1.968704 AGTCACAGACTCACGACTGA 58.031 50.000 0.00 0.00 38.71 3.41
3652 7180 1.080298 CTAGTCGCGAGTCACAGACT 58.920 55.000 21.77 8.98 46.42 3.24
3653 7181 0.797542 ACTAGTCGCGAGTCACAGAC 59.202 55.000 21.77 0.04 0.00 3.51
3654 7182 2.375173 TACTAGTCGCGAGTCACAGA 57.625 50.000 21.77 0.80 0.00 3.41
3655 7183 3.677190 ATTACTAGTCGCGAGTCACAG 57.323 47.619 21.77 15.00 0.00 3.66
3656 7184 3.754955 CAATTACTAGTCGCGAGTCACA 58.245 45.455 21.77 1.65 0.00 3.58
3657 7185 2.530700 GCAATTACTAGTCGCGAGTCAC 59.469 50.000 21.77 3.12 0.00 3.67
3658 7186 2.422479 AGCAATTACTAGTCGCGAGTCA 59.578 45.455 21.77 4.11 0.00 3.41
3659 7187 3.067721 AGCAATTACTAGTCGCGAGTC 57.932 47.619 21.77 3.72 0.00 3.36
3660 7188 3.548415 GCTAGCAATTACTAGTCGCGAGT 60.548 47.826 21.82 21.82 41.49 4.18
3661 7189 2.974536 GCTAGCAATTACTAGTCGCGAG 59.025 50.000 10.24 0.00 41.49 5.03
3662 7190 2.287427 GGCTAGCAATTACTAGTCGCGA 60.287 50.000 18.24 3.71 41.49 5.87
3663 7191 2.052157 GGCTAGCAATTACTAGTCGCG 58.948 52.381 18.24 0.00 41.49 5.87
3664 7192 3.053455 CTGGCTAGCAATTACTAGTCGC 58.947 50.000 18.24 0.00 45.89 5.19
3665 7193 3.053455 GCTGGCTAGCAATTACTAGTCG 58.947 50.000 18.27 8.25 45.89 4.18
3682 7210 1.214589 GTTGATGCTGCCTTGCTGG 59.785 57.895 0.00 0.00 39.35 4.85
3683 7211 0.109272 CTGTTGATGCTGCCTTGCTG 60.109 55.000 0.00 0.00 0.00 4.41
3684 7212 1.874345 GCTGTTGATGCTGCCTTGCT 61.874 55.000 0.00 0.00 0.00 3.91
3685 7213 1.445582 GCTGTTGATGCTGCCTTGC 60.446 57.895 0.00 0.00 0.00 4.01
3686 7214 0.109272 CTGCTGTTGATGCTGCCTTG 60.109 55.000 0.00 0.00 33.25 3.61
3687 7215 1.874345 GCTGCTGTTGATGCTGCCTT 61.874 55.000 0.00 0.00 45.39 4.35
3688 7216 2.341101 GCTGCTGTTGATGCTGCCT 61.341 57.895 0.00 0.00 45.39 4.75
3689 7217 2.181021 GCTGCTGTTGATGCTGCC 59.819 61.111 0.00 0.00 45.39 4.85
3691 7219 0.448197 CTGAGCTGCTGTTGATGCTG 59.552 55.000 7.01 0.00 35.76 4.41
3692 7220 1.306642 GCTGAGCTGCTGTTGATGCT 61.307 55.000 7.01 0.00 38.59 3.79
3693 7221 1.136984 GCTGAGCTGCTGTTGATGC 59.863 57.895 7.01 0.00 0.00 3.91
3694 7222 0.448197 CTGCTGAGCTGCTGTTGATG 59.552 55.000 7.01 0.00 0.00 3.07
3695 7223 2.855887 CTGCTGAGCTGCTGTTGAT 58.144 52.632 7.01 0.00 0.00 2.57
3696 7224 4.373771 CTGCTGAGCTGCTGTTGA 57.626 55.556 7.01 0.00 0.00 3.18
3705 7233 1.088910 GCCTGAGTTAGCTGCTGAGC 61.089 60.000 13.43 0.00 46.64 4.26
3706 7234 0.248565 TGCCTGAGTTAGCTGCTGAG 59.751 55.000 13.43 0.00 0.00 3.35
3707 7235 0.036952 GTGCCTGAGTTAGCTGCTGA 60.037 55.000 13.43 0.00 0.00 4.26
3708 7236 0.036577 AGTGCCTGAGTTAGCTGCTG 60.037 55.000 13.43 0.00 0.00 4.41
3709 7237 0.689623 AAGTGCCTGAGTTAGCTGCT 59.310 50.000 7.57 7.57 0.00 4.24
3710 7238 2.275318 CTAAGTGCCTGAGTTAGCTGC 58.725 52.381 0.00 0.00 32.06 5.25
3714 7242 2.941453 TCGCTAAGTGCCTGAGTTAG 57.059 50.000 0.00 0.00 39.69 2.34
3715 7243 2.159099 CCATCGCTAAGTGCCTGAGTTA 60.159 50.000 0.00 0.00 38.78 2.24
3716 7244 1.406069 CCATCGCTAAGTGCCTGAGTT 60.406 52.381 0.00 0.00 38.78 3.01
3717 7245 0.176680 CCATCGCTAAGTGCCTGAGT 59.823 55.000 0.00 0.00 38.78 3.41
3718 7246 0.461548 TCCATCGCTAAGTGCCTGAG 59.538 55.000 0.00 0.00 38.78 3.35
3719 7247 0.901827 TTCCATCGCTAAGTGCCTGA 59.098 50.000 0.00 0.00 38.78 3.86
3720 7248 1.293924 CTTCCATCGCTAAGTGCCTG 58.706 55.000 0.00 0.00 38.78 4.85
3721 7249 0.179000 CCTTCCATCGCTAAGTGCCT 59.821 55.000 0.00 0.00 38.78 4.75
3722 7250 1.440145 GCCTTCCATCGCTAAGTGCC 61.440 60.000 0.00 0.00 38.78 5.01
3723 7251 0.744414 TGCCTTCCATCGCTAAGTGC 60.744 55.000 0.00 0.00 38.57 4.40
3724 7252 1.293924 CTGCCTTCCATCGCTAAGTG 58.706 55.000 0.00 0.00 0.00 3.16
3725 7253 0.462759 GCTGCCTTCCATCGCTAAGT 60.463 55.000 0.00 0.00 0.00 2.24
3726 7254 0.462581 TGCTGCCTTCCATCGCTAAG 60.463 55.000 0.00 0.00 0.00 2.18
3727 7255 0.744414 GTGCTGCCTTCCATCGCTAA 60.744 55.000 0.00 0.00 0.00 3.09
3728 7256 1.153369 GTGCTGCCTTCCATCGCTA 60.153 57.895 0.00 0.00 0.00 4.26
3729 7257 2.437359 GTGCTGCCTTCCATCGCT 60.437 61.111 0.00 0.00 0.00 4.93
3730 7258 3.512516 GGTGCTGCCTTCCATCGC 61.513 66.667 0.00 0.00 0.00 4.58
3731 7259 1.675310 TTGGTGCTGCCTTCCATCG 60.675 57.895 8.61 0.00 38.35 3.84
3732 7260 0.610232 AGTTGGTGCTGCCTTCCATC 60.610 55.000 8.61 8.22 38.35 3.51
3733 7261 0.698238 TAGTTGGTGCTGCCTTCCAT 59.302 50.000 8.61 0.05 38.35 3.41
3734 7262 0.036732 CTAGTTGGTGCTGCCTTCCA 59.963 55.000 0.00 0.43 38.35 3.53
3735 7263 1.308783 GCTAGTTGGTGCTGCCTTCC 61.309 60.000 0.00 0.00 38.35 3.46
3736 7264 0.606401 TGCTAGTTGGTGCTGCCTTC 60.606 55.000 0.00 0.00 38.35 3.46
3737 7265 0.890996 GTGCTAGTTGGTGCTGCCTT 60.891 55.000 0.00 0.00 38.35 4.35
3738 7266 1.302832 GTGCTAGTTGGTGCTGCCT 60.303 57.895 0.00 0.00 38.35 4.75
3739 7267 2.680913 CGTGCTAGTTGGTGCTGCC 61.681 63.158 0.00 0.00 37.90 4.85
3740 7268 2.863153 CGTGCTAGTTGGTGCTGC 59.137 61.111 0.00 0.00 0.00 5.25
3741 7269 1.904852 CTGCGTGCTAGTTGGTGCTG 61.905 60.000 0.00 0.00 0.00 4.41
3742 7270 1.669115 CTGCGTGCTAGTTGGTGCT 60.669 57.895 0.00 0.00 0.00 4.40
3743 7271 2.680913 CCTGCGTGCTAGTTGGTGC 61.681 63.158 0.00 0.00 0.00 5.01
3744 7272 0.602638 TTCCTGCGTGCTAGTTGGTG 60.603 55.000 0.00 0.00 0.00 4.17
3745 7273 0.320771 CTTCCTGCGTGCTAGTTGGT 60.321 55.000 0.00 0.00 0.00 3.67
3746 7274 0.037326 TCTTCCTGCGTGCTAGTTGG 60.037 55.000 0.00 0.00 0.00 3.77
3747 7275 1.728971 CTTCTTCCTGCGTGCTAGTTG 59.271 52.381 0.00 0.00 0.00 3.16
3748 7276 1.618837 TCTTCTTCCTGCGTGCTAGTT 59.381 47.619 0.00 0.00 0.00 2.24
3749 7277 1.257743 TCTTCTTCCTGCGTGCTAGT 58.742 50.000 0.00 0.00 0.00 2.57
3750 7278 1.996191 GTTCTTCTTCCTGCGTGCTAG 59.004 52.381 0.00 0.00 0.00 3.42
3751 7279 1.337823 GGTTCTTCTTCCTGCGTGCTA 60.338 52.381 0.00 0.00 0.00 3.49
3752 7280 0.603975 GGTTCTTCTTCCTGCGTGCT 60.604 55.000 0.00 0.00 0.00 4.40
3753 7281 0.884704 TGGTTCTTCTTCCTGCGTGC 60.885 55.000 0.00 0.00 0.00 5.34
3754 7282 1.532868 CTTGGTTCTTCTTCCTGCGTG 59.467 52.381 0.00 0.00 0.00 5.34
3755 7283 1.884235 CTTGGTTCTTCTTCCTGCGT 58.116 50.000 0.00 0.00 0.00 5.24
3756 7284 0.519077 GCTTGGTTCTTCTTCCTGCG 59.481 55.000 0.00 0.00 0.00 5.18
3757 7285 0.884514 GGCTTGGTTCTTCTTCCTGC 59.115 55.000 0.00 0.00 0.00 4.85
3758 7286 1.160137 CGGCTTGGTTCTTCTTCCTG 58.840 55.000 0.00 0.00 0.00 3.86
3759 7287 0.036875 CCGGCTTGGTTCTTCTTCCT 59.963 55.000 0.00 0.00 0.00 3.36
3760 7288 1.587043 GCCGGCTTGGTTCTTCTTCC 61.587 60.000 22.15 0.00 41.21 3.46
3761 7289 0.889186 TGCCGGCTTGGTTCTTCTTC 60.889 55.000 29.70 0.00 41.21 2.87
3762 7290 0.890996 CTGCCGGCTTGGTTCTTCTT 60.891 55.000 29.70 0.00 41.21 2.52
3763 7291 1.302832 CTGCCGGCTTGGTTCTTCT 60.303 57.895 29.70 0.00 41.21 2.85
3764 7292 2.982744 GCTGCCGGCTTGGTTCTTC 61.983 63.158 29.70 2.83 41.21 2.87
3765 7293 2.985847 GCTGCCGGCTTGGTTCTT 60.986 61.111 29.70 0.00 41.21 2.52
3766 7294 4.269523 TGCTGCCGGCTTGGTTCT 62.270 61.111 29.70 0.00 42.39 3.01
3767 7295 3.741476 CTGCTGCCGGCTTGGTTC 61.741 66.667 29.70 10.32 42.39 3.62
3768 7296 3.790416 TTCTGCTGCCGGCTTGGTT 62.790 57.895 29.70 0.00 42.39 3.67
3769 7297 3.790416 TTTCTGCTGCCGGCTTGGT 62.790 57.895 29.70 0.00 42.39 3.67
3770 7298 2.985282 TTTCTGCTGCCGGCTTGG 60.985 61.111 29.70 18.26 42.39 3.61
3771 7299 1.799258 AACTTTCTGCTGCCGGCTTG 61.799 55.000 29.70 21.00 42.39 4.01
3772 7300 0.250727 TAACTTTCTGCTGCCGGCTT 60.251 50.000 29.70 12.59 42.39 4.35
3773 7301 0.955919 GTAACTTTCTGCTGCCGGCT 60.956 55.000 29.70 5.21 42.39 5.52
3774 7302 1.502190 GTAACTTTCTGCTGCCGGC 59.498 57.895 22.73 22.73 42.22 6.13
3775 7303 2.171635 GGTAACTTTCTGCTGCCGG 58.828 57.895 0.00 0.00 0.00 6.13
3796 7324 1.099879 AATCTCCATCGGCAGCAAGC 61.100 55.000 0.00 0.00 44.65 4.01
3797 7325 0.942962 GAATCTCCATCGGCAGCAAG 59.057 55.000 0.00 0.00 0.00 4.01
3798 7326 0.252761 TGAATCTCCATCGGCAGCAA 59.747 50.000 0.00 0.00 0.00 3.91
3799 7327 0.179065 CTGAATCTCCATCGGCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
3800 7328 1.505477 GCTGAATCTCCATCGGCAGC 61.505 60.000 0.00 0.00 46.25 5.25
3801 7329 2.614581 GCTGAATCTCCATCGGCAG 58.385 57.895 2.62 0.00 46.25 4.85
3802 7330 4.863707 GCTGAATCTCCATCGGCA 57.136 55.556 2.62 0.00 46.25 5.69
3803 7331 0.659957 GTTGCTGAATCTCCATCGGC 59.340 55.000 0.49 0.49 46.98 5.54
3804 7332 1.938577 CTGTTGCTGAATCTCCATCGG 59.061 52.381 0.00 0.00 0.00 4.18
3805 7333 1.329906 GCTGTTGCTGAATCTCCATCG 59.670 52.381 0.00 0.00 36.03 3.84
3806 7334 1.329906 CGCTGTTGCTGAATCTCCATC 59.670 52.381 0.00 0.00 36.97 3.51
3807 7335 1.376543 CGCTGTTGCTGAATCTCCAT 58.623 50.000 0.00 0.00 36.97 3.41
3808 7336 0.674581 CCGCTGTTGCTGAATCTCCA 60.675 55.000 0.00 0.00 36.97 3.86
3809 7337 0.674895 ACCGCTGTTGCTGAATCTCC 60.675 55.000 0.00 0.00 36.97 3.71
3810 7338 0.445436 CACCGCTGTTGCTGAATCTC 59.555 55.000 0.00 0.00 36.97 2.75
3811 7339 0.957395 CCACCGCTGTTGCTGAATCT 60.957 55.000 0.00 0.00 36.97 2.40
3812 7340 1.503542 CCACCGCTGTTGCTGAATC 59.496 57.895 0.00 0.00 36.97 2.52
3813 7341 2.629656 GCCACCGCTGTTGCTGAAT 61.630 57.895 0.00 0.00 36.97 2.57
3814 7342 3.286751 GCCACCGCTGTTGCTGAA 61.287 61.111 0.00 0.00 36.97 3.02
3832 7360 4.767255 CCTGGAGTCGCTGCCACC 62.767 72.222 0.00 0.00 0.00 4.61
3906 7758 4.383118 GGTCCTCATCTCCTCGATCAAAAA 60.383 45.833 0.00 0.00 0.00 1.94
3910 7762 1.815795 CGGTCCTCATCTCCTCGATCA 60.816 57.143 0.00 0.00 0.00 2.92
3995 7848 2.470196 CGTCAACACGTCGGAGATAT 57.530 50.000 0.00 0.00 41.42 1.63
4193 8065 4.765856 GGATCATTGGCAATCTGAATAGCT 59.234 41.667 10.36 0.00 0.00 3.32
4414 8289 7.660208 CACATACATCTAAGTATTAACACCCCC 59.340 40.741 0.00 0.00 32.56 5.40
4605 8748 1.683011 CCGACATTCAATGCCCTCCTT 60.683 52.381 0.00 0.00 0.00 3.36
4738 8883 2.107031 TGTGATAATAGCAGCCTGCCAT 59.893 45.455 14.25 1.42 46.52 4.40
5122 9399 6.588719 AAACATTTGGCTTATGCACTAGAA 57.411 33.333 0.00 0.00 41.91 2.10
5316 9593 4.156922 CCACTTTGGTTGTGTCAGTTAACA 59.843 41.667 8.61 0.00 33.92 2.41
5531 9809 4.439700 GCTTTGCAGAATCTGTATGTGCAT 60.440 41.667 12.29 0.00 43.34 3.96
5697 9976 7.915293 TGAGTAATTTCGAAACACCATGTAT 57.085 32.000 13.81 0.00 0.00 2.29
5717 9996 7.807977 AACAACATTTAGACAAGACATGAGT 57.192 32.000 0.00 0.00 0.00 3.41
5850 10129 4.986034 CGCCGATTATGTTACCATCACTAA 59.014 41.667 0.00 0.00 32.29 2.24
5887 10166 5.009310 ACATATTGCACATATTGGCTCAGTG 59.991 40.000 0.00 0.00 0.00 3.66
6100 10379 5.664294 ATCAAACATATGCTTGCAAGGAA 57.336 34.783 25.06 14.05 0.00 3.36
6275 10554 4.286032 ACACACATAACCTACACCAGATGT 59.714 41.667 0.00 0.00 46.06 3.06
6355 10634 4.757594 ACAAAAAGCATGAACACACACAT 58.242 34.783 0.00 0.00 0.00 3.21
6413 10692 6.842676 ACCCCCTCAATACATTCTTAAGATC 58.157 40.000 5.89 0.00 0.00 2.75
6608 10992 8.264347 TGTCAGCTAAAATACCATGATAGTTCA 58.736 33.333 0.00 0.00 36.00 3.18
6918 11302 5.390461 CGAGTTCTCCGCATTTGAAACATTA 60.390 40.000 0.00 0.00 0.00 1.90
7341 11725 1.883638 TCAGGTCTGAAGCACCAATGC 60.884 52.381 0.00 0.00 42.78 3.56
7679 12063 0.974010 TTAGTAGCCGGTGTGGAGGG 60.974 60.000 1.90 0.00 42.00 4.30
7707 12091 3.713248 TCTCATGGTCTCTGCATGGTATT 59.287 43.478 0.00 0.00 0.00 1.89
7881 12265 3.000041 CGTTCACATGCTAGCAACCTTA 59.000 45.455 23.54 4.77 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.