Multiple sequence alignment - TraesCS7D01G219100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G219100 chr7D 100.000 4677 0 0 1 4677 179538234 179533558 0.000000e+00 8637.0
1 TraesCS7D01G219100 chr7D 88.003 1367 151 10 2208 3564 179508967 179507604 0.000000e+00 1604.0
2 TraesCS7D01G219100 chr7D 81.795 1549 244 22 2036 3562 179522208 179520676 0.000000e+00 1264.0
3 TraesCS7D01G219100 chr7D 85.519 877 106 11 1152 2016 179510096 179509229 0.000000e+00 896.0
4 TraesCS7D01G219100 chr7D 82.167 886 143 13 1145 2021 179523153 179522274 0.000000e+00 747.0
5 TraesCS7D01G219100 chr7D 93.931 346 19 2 530 873 548476234 548476579 5.360000e-144 521.0
6 TraesCS7D01G219100 chr7A 90.924 2964 200 36 872 3779 183951512 183948562 0.000000e+00 3919.0
7 TraesCS7D01G219100 chr7A 87.660 2658 245 33 978 3564 183858861 183856216 0.000000e+00 3014.0
8 TraesCS7D01G219100 chr7A 82.736 1228 193 12 2349 3562 183918191 183916969 0.000000e+00 1075.0
9 TraesCS7D01G219100 chr7A 95.222 607 22 3 3777 4383 183948458 183947859 0.000000e+00 953.0
10 TraesCS7D01G219100 chr7A 80.156 771 128 18 1255 2021 183920896 183920147 1.900000e-153 553.0
11 TraesCS7D01G219100 chr7A 94.077 287 17 0 4391 4677 183947487 183947201 2.000000e-118 436.0
12 TraesCS7D01G219100 chr7A 87.003 377 30 15 48 406 183951981 183951606 1.570000e-109 407.0
13 TraesCS7D01G219100 chr7B 87.244 1513 154 11 1585 3070 145740292 145738792 0.000000e+00 1688.0
14 TraesCS7D01G219100 chr7B 87.661 1321 151 9 2253 3564 145697362 145696045 0.000000e+00 1526.0
15 TraesCS7D01G219100 chr7B 81.730 1549 251 20 2036 3562 145710695 145709157 0.000000e+00 1264.0
16 TraesCS7D01G219100 chr7B 89.733 711 54 4 872 1582 145741034 145740343 0.000000e+00 891.0
17 TraesCS7D01G219100 chr7B 84.045 890 112 16 1152 2021 145698720 145697841 0.000000e+00 830.0
18 TraesCS7D01G219100 chr7B 82.167 886 143 13 1145 2021 145711640 145710761 0.000000e+00 747.0
19 TraesCS7D01G219100 chr7B 90.329 486 30 8 48 532 145741512 145741043 5.140000e-174 621.0
20 TraesCS7D01G219100 chr7B 79.315 817 159 9 2233 3047 48050322 48049514 8.790000e-157 564.0
21 TraesCS7D01G219100 chr7B 88.009 467 50 3 3922 4383 145737617 145737152 8.850000e-152 547.0
22 TraesCS7D01G219100 chr7B 90.805 174 15 1 4394 4566 145736772 145736599 1.010000e-56 231.0
23 TraesCS7D01G219100 chr7B 81.301 246 26 10 3729 3957 145695879 145695637 1.030000e-41 182.0
24 TraesCS7D01G219100 chr7B 76.050 238 34 13 319 535 145790523 145790288 8.280000e-18 102.0
25 TraesCS7D01G219100 chr6A 79.733 824 152 11 2233 3047 592500748 592499931 2.430000e-162 582.0
26 TraesCS7D01G219100 chr6A 80.096 417 63 12 3133 3531 592579992 592580406 4.580000e-75 292.0
27 TraesCS7D01G219100 chr1D 94.675 338 15 3 532 868 131288929 131289264 5.360000e-144 521.0
28 TraesCS7D01G219100 chr1D 93.567 342 21 1 533 873 15303152 15302811 4.180000e-140 508.0
29 TraesCS7D01G219100 chr5D 93.895 344 19 2 533 876 35154841 35155182 6.940000e-143 518.0
30 TraesCS7D01G219100 chr6D 78.087 826 168 11 2235 3052 445824608 445823788 1.160000e-140 510.0
31 TraesCS7D01G219100 chr6D 74.235 392 77 15 1635 2004 445852816 445853205 4.880000e-30 143.0
32 TraesCS7D01G219100 chr3A 94.277 332 19 0 536 867 731003571 731003902 4.180000e-140 508.0
33 TraesCS7D01G219100 chr2D 93.567 342 20 2 535 875 14100511 14100851 4.180000e-140 508.0
34 TraesCS7D01G219100 chr2A 93.529 340 20 2 532 869 778156844 778157183 5.400000e-139 505.0
35 TraesCS7D01G219100 chr1A 93.769 337 20 1 538 873 54297598 54297934 5.400000e-139 505.0
36 TraesCS7D01G219100 chr3B 93.235 340 23 0 536 875 797669616 797669955 6.990000e-138 501.0
37 TraesCS7D01G219100 chr6B 78.322 429 72 11 3142 3552 672619435 672619010 1.670000e-64 257.0
38 TraesCS7D01G219100 chr6B 76.364 440 83 9 3127 3548 672885415 672885851 2.830000e-52 217.0
39 TraesCS7D01G219100 chr6B 77.990 209 45 1 1635 1843 673616186 673615979 3.800000e-26 130.0
40 TraesCS7D01G219100 chr4A 88.679 53 4 2 4287 4338 543377183 543377132 3.910000e-06 63.9
41 TraesCS7D01G219100 chr4D 89.583 48 4 1 4292 4338 53749983 53750030 5.050000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G219100 chr7D 179533558 179538234 4676 True 8637.00 8637 100.000000 1 4677 1 chr7D.!!$R1 4676
1 TraesCS7D01G219100 chr7D 179507604 179510096 2492 True 1250.00 1604 86.761000 1152 3564 2 chr7D.!!$R2 2412
2 TraesCS7D01G219100 chr7D 179520676 179523153 2477 True 1005.50 1264 81.981000 1145 3562 2 chr7D.!!$R3 2417
3 TraesCS7D01G219100 chr7A 183856216 183858861 2645 True 3014.00 3014 87.660000 978 3564 1 chr7A.!!$R1 2586
4 TraesCS7D01G219100 chr7A 183947201 183951981 4780 True 1428.75 3919 91.806500 48 4677 4 chr7A.!!$R3 4629
5 TraesCS7D01G219100 chr7A 183916969 183920896 3927 True 814.00 1075 81.446000 1255 3562 2 chr7A.!!$R2 2307
6 TraesCS7D01G219100 chr7B 145709157 145711640 2483 True 1005.50 1264 81.948500 1145 3562 2 chr7B.!!$R4 2417
7 TraesCS7D01G219100 chr7B 145695637 145698720 3083 True 846.00 1526 84.335667 1152 3957 3 chr7B.!!$R3 2805
8 TraesCS7D01G219100 chr7B 145736599 145741512 4913 True 795.60 1688 89.224000 48 4566 5 chr7B.!!$R5 4518
9 TraesCS7D01G219100 chr7B 48049514 48050322 808 True 564.00 564 79.315000 2233 3047 1 chr7B.!!$R1 814
10 TraesCS7D01G219100 chr6A 592499931 592500748 817 True 582.00 582 79.733000 2233 3047 1 chr6A.!!$R1 814
11 TraesCS7D01G219100 chr6D 445823788 445824608 820 True 510.00 510 78.087000 2235 3052 1 chr6D.!!$R1 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.249657 GATCACTGGTGCTCGGGATC 60.250 60.0 0.00 0.0 0.00 3.36 F
746 774 0.251564 CCAATGGCAGTGGTGGGTAA 60.252 55.0 25.07 0.0 0.00 2.85 F
1480 1529 0.324943 GGTTCTGGACCTGCTAAGCA 59.675 55.0 0.00 0.0 45.55 3.91 F
2484 4476 0.618680 CAGACCCATGTCCTCCAGGA 60.619 60.0 0.00 0.0 42.81 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1062 1090 0.252881 TGGTGGCAGGAGAAGGATCT 60.253 55.0 0.00 0.00 39.10 2.75 R
1843 1960 0.946221 CTGTCCAGAAGCACCACGAC 60.946 60.0 0.00 0.00 0.00 4.34 R
2908 4909 1.200519 AACTTCGTATGGCTGGCCTA 58.799 50.0 13.05 0.04 36.94 3.93 R
3870 6098 0.575848 TGGGGAGGGATAGGGCATAA 59.424 55.0 0.00 0.00 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.170607 CTGTTTATCCGGGATCACTGGT 59.829 50.000 13.97 0.00 46.44 4.00
22 23 2.093181 TGTTTATCCGGGATCACTGGTG 60.093 50.000 13.97 0.00 46.44 4.17
23 24 0.468226 TTATCCGGGATCACTGGTGC 59.532 55.000 13.97 0.00 46.44 5.01
24 25 0.398522 TATCCGGGATCACTGGTGCT 60.399 55.000 13.97 0.00 46.44 4.40
25 26 1.690219 ATCCGGGATCACTGGTGCTC 61.690 60.000 2.97 0.00 46.44 4.26
26 27 2.202797 CGGGATCACTGGTGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
27 28 2.187946 GGGATCACTGGTGCTCGG 59.812 66.667 0.00 0.00 0.00 4.63
28 29 2.187946 GGATCACTGGTGCTCGGG 59.812 66.667 0.00 0.00 0.00 5.14
29 30 2.359169 GGATCACTGGTGCTCGGGA 61.359 63.158 0.00 0.00 0.00 5.14
30 31 1.690219 GGATCACTGGTGCTCGGGAT 61.690 60.000 0.00 0.00 0.00 3.85
31 32 0.249657 GATCACTGGTGCTCGGGATC 60.250 60.000 0.00 0.00 0.00 3.36
32 33 2.021068 ATCACTGGTGCTCGGGATCG 62.021 60.000 0.00 0.00 37.82 3.69
33 34 4.148825 ACTGGTGCTCGGGATCGC 62.149 66.667 0.00 0.00 36.13 4.58
34 35 4.147449 CTGGTGCTCGGGATCGCA 62.147 66.667 10.70 0.00 36.13 5.10
35 36 3.451556 CTGGTGCTCGGGATCGCAT 62.452 63.158 10.70 0.00 38.56 4.73
36 37 2.969238 GGTGCTCGGGATCGCATG 60.969 66.667 10.70 2.83 38.56 4.06
37 38 3.643978 GTGCTCGGGATCGCATGC 61.644 66.667 7.91 7.91 38.56 4.06
38 39 3.853487 TGCTCGGGATCGCATGCT 61.853 61.111 17.13 0.00 36.13 3.79
39 40 3.040763 GCTCGGGATCGCATGCTC 61.041 66.667 17.13 7.30 36.13 4.26
40 41 2.356793 CTCGGGATCGCATGCTCC 60.357 66.667 17.13 16.44 36.13 4.70
41 42 3.153781 TCGGGATCGCATGCTCCA 61.154 61.111 23.26 5.89 36.13 3.86
42 43 2.031616 CGGGATCGCATGCTCCAT 59.968 61.111 23.26 10.23 32.90 3.41
43 44 2.322830 CGGGATCGCATGCTCCATG 61.323 63.158 23.26 13.50 43.91 3.66
44 45 1.228063 GGGATCGCATGCTCCATGT 60.228 57.895 23.26 1.40 43.10 3.21
45 46 1.233285 GGGATCGCATGCTCCATGTC 61.233 60.000 23.26 9.44 43.10 3.06
46 47 1.233285 GGATCGCATGCTCCATGTCC 61.233 60.000 18.58 11.24 43.10 4.02
154 155 4.444536 ACCACAAGAAAGTTACTACGCAA 58.555 39.130 0.00 0.00 0.00 4.85
167 168 2.159572 ACTACGCAATTTGTCGAATGGC 60.160 45.455 16.34 2.31 40.66 4.40
168 169 0.881118 ACGCAATTTGTCGAATGGCT 59.119 45.000 16.34 0.00 41.69 4.75
169 170 1.261989 CGCAATTTGTCGAATGGCTG 58.738 50.000 10.01 1.35 41.69 4.85
170 171 1.401409 CGCAATTTGTCGAATGGCTGT 60.401 47.619 10.01 0.00 41.69 4.40
171 172 2.159585 CGCAATTTGTCGAATGGCTGTA 60.160 45.455 10.01 0.00 41.69 2.74
172 173 3.171277 GCAATTTGTCGAATGGCTGTAC 58.829 45.455 5.04 0.00 40.84 2.90
173 174 3.416277 CAATTTGTCGAATGGCTGTACG 58.584 45.455 0.00 0.00 0.00 3.67
174 175 0.793861 TTTGTCGAATGGCTGTACGC 59.206 50.000 0.00 1.72 38.13 4.42
191 192 1.755380 ACGCCTGTACCTTATCTGGAC 59.245 52.381 0.00 0.00 0.00 4.02
205 206 1.003839 TGGACTCAACATCCGGTGC 60.004 57.895 0.00 0.00 39.30 5.01
395 422 2.194201 TGGCAACCAGCTACCTTTAC 57.806 50.000 0.00 0.00 44.79 2.01
446 473 1.103803 TCTCCCCGAGAAGATGAACG 58.896 55.000 0.00 0.00 35.59 3.95
476 503 1.296715 GTGCTGATCCAACGACCCT 59.703 57.895 0.00 0.00 0.00 4.34
477 504 1.021390 GTGCTGATCCAACGACCCTG 61.021 60.000 0.00 0.00 0.00 4.45
496 524 5.779771 ACCCTGTGTGAATGATAAATTTGGT 59.220 36.000 0.00 0.00 0.00 3.67
499 527 7.377398 CCTGTGTGAATGATAAATTTGGTTGA 58.623 34.615 0.00 0.00 0.00 3.18
514 542 4.920640 TGGTTGAAATGCCGTTTTTCTA 57.079 36.364 0.00 0.00 34.80 2.10
528 556 5.392057 CCGTTTTTCTATTGCTTTCCTCCTC 60.392 44.000 0.00 0.00 0.00 3.71
529 557 5.412904 CGTTTTTCTATTGCTTTCCTCCTCT 59.587 40.000 0.00 0.00 0.00 3.69
530 558 6.594159 CGTTTTTCTATTGCTTTCCTCCTCTA 59.406 38.462 0.00 0.00 0.00 2.43
531 559 7.281100 CGTTTTTCTATTGCTTTCCTCCTCTAT 59.719 37.037 0.00 0.00 0.00 1.98
532 560 8.961634 GTTTTTCTATTGCTTTCCTCCTCTATT 58.038 33.333 0.00 0.00 0.00 1.73
533 561 9.533831 TTTTTCTATTGCTTTCCTCCTCTATTT 57.466 29.630 0.00 0.00 0.00 1.40
562 590 7.173863 ACTAGTAATAATGTACGTGCAATGC 57.826 36.000 11.22 0.00 0.00 3.56
563 591 6.759356 ACTAGTAATAATGTACGTGCAATGCA 59.241 34.615 11.22 2.72 35.60 3.96
579 607 7.555306 TGCAATGCACGTTTATATTAGGTAA 57.445 32.000 2.72 0.00 31.71 2.85
580 608 7.635423 TGCAATGCACGTTTATATTAGGTAAG 58.365 34.615 2.72 0.00 31.71 2.34
581 609 7.496263 TGCAATGCACGTTTATATTAGGTAAGA 59.504 33.333 2.72 0.00 31.71 2.10
582 610 8.504005 GCAATGCACGTTTATATTAGGTAAGAT 58.496 33.333 0.00 0.00 0.00 2.40
624 652 8.988064 ATTAGGTAAGATATATCAGTTGCACG 57.012 34.615 15.08 0.00 0.00 5.34
625 653 6.406692 AGGTAAGATATATCAGTTGCACGT 57.593 37.500 15.08 2.68 0.00 4.49
626 654 6.817184 AGGTAAGATATATCAGTTGCACGTT 58.183 36.000 15.08 0.17 0.00 3.99
627 655 6.701841 AGGTAAGATATATCAGTTGCACGTTG 59.298 38.462 15.08 0.00 0.00 4.10
628 656 6.700081 GGTAAGATATATCAGTTGCACGTTGA 59.300 38.462 15.08 0.00 0.00 3.18
629 657 7.385205 GGTAAGATATATCAGTTGCACGTTGAT 59.615 37.037 15.08 10.54 35.79 2.57
630 658 9.406828 GTAAGATATATCAGTTGCACGTTGATA 57.593 33.333 15.08 13.37 37.97 2.15
632 660 9.494271 AAGATATATCAGTTGCACGTTGATATT 57.506 29.630 22.05 14.40 40.03 1.28
633 661 9.494271 AGATATATCAGTTGCACGTTGATATTT 57.506 29.630 22.05 17.32 40.03 1.40
634 662 9.533983 GATATATCAGTTGCACGTTGATATTTG 57.466 33.333 22.05 0.37 40.03 2.32
635 663 4.418013 TCAGTTGCACGTTGATATTTGG 57.582 40.909 0.00 0.00 0.00 3.28
636 664 3.818210 TCAGTTGCACGTTGATATTTGGT 59.182 39.130 0.00 0.00 0.00 3.67
637 665 4.998033 TCAGTTGCACGTTGATATTTGGTA 59.002 37.500 0.00 0.00 0.00 3.25
638 666 5.470437 TCAGTTGCACGTTGATATTTGGTAA 59.530 36.000 0.00 0.00 0.00 2.85
639 667 5.794945 CAGTTGCACGTTGATATTTGGTAAG 59.205 40.000 0.00 0.00 0.00 2.34
640 668 5.703592 AGTTGCACGTTGATATTTGGTAAGA 59.296 36.000 0.00 0.00 0.00 2.10
641 669 6.374333 AGTTGCACGTTGATATTTGGTAAGAT 59.626 34.615 0.00 0.00 0.00 2.40
642 670 7.551262 AGTTGCACGTTGATATTTGGTAAGATA 59.449 33.333 0.00 0.00 0.00 1.98
643 671 8.342634 GTTGCACGTTGATATTTGGTAAGATAT 58.657 33.333 0.00 0.00 0.00 1.63
644 672 8.083462 TGCACGTTGATATTTGGTAAGATATC 57.917 34.615 0.00 0.00 36.33 1.63
645 673 7.713073 TGCACGTTGATATTTGGTAAGATATCA 59.287 33.333 5.32 2.78 41.21 2.15
646 674 8.556194 GCACGTTGATATTTGGTAAGATATCAA 58.444 33.333 5.32 12.34 45.70 2.57
688 716 9.466497 AATGGTAGGATATTAATTACATGGCAG 57.534 33.333 0.00 0.00 0.00 4.85
689 717 8.213489 TGGTAGGATATTAATTACATGGCAGA 57.787 34.615 0.00 0.00 0.00 4.26
690 718 8.835734 TGGTAGGATATTAATTACATGGCAGAT 58.164 33.333 0.00 0.00 0.00 2.90
691 719 9.686683 GGTAGGATATTAATTACATGGCAGATT 57.313 33.333 0.00 0.00 0.00 2.40
694 722 9.812347 AGGATATTAATTACATGGCAGATTTCA 57.188 29.630 0.00 0.00 0.00 2.69
697 725 6.713762 TTAATTACATGGCAGATTTCAGGG 57.286 37.500 0.00 0.00 0.00 4.45
698 726 2.734755 TACATGGCAGATTTCAGGGG 57.265 50.000 0.00 0.00 0.00 4.79
699 727 1.002069 ACATGGCAGATTTCAGGGGA 58.998 50.000 0.00 0.00 0.00 4.81
700 728 1.572415 ACATGGCAGATTTCAGGGGAT 59.428 47.619 0.00 0.00 0.00 3.85
701 729 2.785269 ACATGGCAGATTTCAGGGGATA 59.215 45.455 0.00 0.00 0.00 2.59
702 730 3.181436 ACATGGCAGATTTCAGGGGATAG 60.181 47.826 0.00 0.00 0.00 2.08
703 731 1.143684 TGGCAGATTTCAGGGGATAGC 59.856 52.381 0.00 0.00 0.00 2.97
704 732 1.517242 GCAGATTTCAGGGGATAGCG 58.483 55.000 0.00 0.00 0.00 4.26
705 733 1.202698 GCAGATTTCAGGGGATAGCGT 60.203 52.381 0.00 0.00 0.00 5.07
706 734 2.746472 GCAGATTTCAGGGGATAGCGTT 60.746 50.000 0.00 0.00 0.00 4.84
707 735 2.874701 CAGATTTCAGGGGATAGCGTTG 59.125 50.000 0.00 0.00 0.00 4.10
708 736 2.771943 AGATTTCAGGGGATAGCGTTGA 59.228 45.455 0.00 0.00 0.00 3.18
709 737 2.691409 TTTCAGGGGATAGCGTTGAG 57.309 50.000 0.00 0.00 0.00 3.02
710 738 1.568504 TTCAGGGGATAGCGTTGAGT 58.431 50.000 0.00 0.00 0.00 3.41
711 739 1.112113 TCAGGGGATAGCGTTGAGTC 58.888 55.000 0.00 0.00 0.00 3.36
712 740 0.824109 CAGGGGATAGCGTTGAGTCA 59.176 55.000 0.00 0.00 0.00 3.41
713 741 1.207089 CAGGGGATAGCGTTGAGTCAA 59.793 52.381 0.08 0.08 0.00 3.18
714 742 1.906574 AGGGGATAGCGTTGAGTCAAA 59.093 47.619 7.25 0.00 0.00 2.69
715 743 2.304761 AGGGGATAGCGTTGAGTCAAAA 59.695 45.455 7.25 0.00 0.00 2.44
716 744 2.418976 GGGGATAGCGTTGAGTCAAAAC 59.581 50.000 7.25 2.62 0.00 2.43
727 755 7.286609 CGTTGAGTCAAAACGTGTTTATAAC 57.713 36.000 7.25 0.00 44.07 1.89
728 756 6.355144 CGTTGAGTCAAAACGTGTTTATAACC 59.645 38.462 7.25 0.00 44.07 2.85
729 757 6.922247 TGAGTCAAAACGTGTTTATAACCA 57.078 33.333 0.00 0.00 31.63 3.67
730 758 7.317842 TGAGTCAAAACGTGTTTATAACCAA 57.682 32.000 0.00 0.00 31.63 3.67
731 759 7.932335 TGAGTCAAAACGTGTTTATAACCAAT 58.068 30.769 0.00 0.00 31.63 3.16
732 760 7.858382 TGAGTCAAAACGTGTTTATAACCAATG 59.142 33.333 0.00 0.00 31.63 2.82
733 761 7.142680 AGTCAAAACGTGTTTATAACCAATGG 58.857 34.615 0.00 0.00 31.63 3.16
734 762 5.921408 TCAAAACGTGTTTATAACCAATGGC 59.079 36.000 0.00 0.00 31.63 4.40
735 763 5.455056 AAACGTGTTTATAACCAATGGCA 57.545 34.783 0.00 0.00 0.00 4.92
736 764 4.695217 ACGTGTTTATAACCAATGGCAG 57.305 40.909 0.00 0.00 0.00 4.85
737 765 4.076394 ACGTGTTTATAACCAATGGCAGT 58.924 39.130 0.00 0.00 0.00 4.40
738 766 4.083003 ACGTGTTTATAACCAATGGCAGTG 60.083 41.667 8.18 8.18 0.00 3.66
739 767 4.674101 CGTGTTTATAACCAATGGCAGTGG 60.674 45.833 30.65 30.65 42.28 4.00
744 772 2.118076 CCAATGGCAGTGGTGGGT 59.882 61.111 25.07 0.00 0.00 4.51
745 773 1.382240 CCAATGGCAGTGGTGGGTA 59.618 57.895 25.07 0.00 0.00 3.69
746 774 0.251564 CCAATGGCAGTGGTGGGTAA 60.252 55.000 25.07 0.00 0.00 2.85
747 775 1.619432 CCAATGGCAGTGGTGGGTAAT 60.619 52.381 25.07 0.00 0.00 1.89
748 776 2.178580 CAATGGCAGTGGTGGGTAATT 58.821 47.619 7.12 0.00 0.00 1.40
749 777 3.360867 CAATGGCAGTGGTGGGTAATTA 58.639 45.455 7.12 0.00 0.00 1.40
750 778 2.799126 TGGCAGTGGTGGGTAATTAG 57.201 50.000 0.00 0.00 0.00 1.73
751 779 2.270858 TGGCAGTGGTGGGTAATTAGA 58.729 47.619 0.00 0.00 0.00 2.10
752 780 2.238646 TGGCAGTGGTGGGTAATTAGAG 59.761 50.000 0.00 0.00 0.00 2.43
753 781 2.238898 GGCAGTGGTGGGTAATTAGAGT 59.761 50.000 0.00 0.00 0.00 3.24
754 782 3.270877 GCAGTGGTGGGTAATTAGAGTG 58.729 50.000 0.00 0.00 0.00 3.51
755 783 3.307480 GCAGTGGTGGGTAATTAGAGTGT 60.307 47.826 0.00 0.00 0.00 3.55
756 784 4.806286 GCAGTGGTGGGTAATTAGAGTGTT 60.806 45.833 0.00 0.00 0.00 3.32
757 785 5.570034 GCAGTGGTGGGTAATTAGAGTGTTA 60.570 44.000 0.00 0.00 0.00 2.41
758 786 6.469410 CAGTGGTGGGTAATTAGAGTGTTAA 58.531 40.000 0.00 0.00 0.00 2.01
759 787 6.938030 CAGTGGTGGGTAATTAGAGTGTTAAA 59.062 38.462 0.00 0.00 0.00 1.52
760 788 6.938596 AGTGGTGGGTAATTAGAGTGTTAAAC 59.061 38.462 0.00 0.00 0.00 2.01
761 789 5.933463 TGGTGGGTAATTAGAGTGTTAAACG 59.067 40.000 0.00 0.00 0.00 3.60
762 790 5.934043 GGTGGGTAATTAGAGTGTTAAACGT 59.066 40.000 0.00 0.00 0.00 3.99
763 791 6.128472 GGTGGGTAATTAGAGTGTTAAACGTG 60.128 42.308 0.00 0.00 0.00 4.49
764 792 6.424812 GTGGGTAATTAGAGTGTTAAACGTGT 59.575 38.462 0.00 0.00 0.00 4.49
765 793 6.991531 TGGGTAATTAGAGTGTTAAACGTGTT 59.008 34.615 0.00 0.00 0.00 3.32
766 794 7.498570 TGGGTAATTAGAGTGTTAAACGTGTTT 59.501 33.333 3.21 3.21 36.63 2.83
767 795 7.799914 GGGTAATTAGAGTGTTAAACGTGTTTG 59.200 37.037 8.19 0.00 34.23 2.93
768 796 8.550376 GGTAATTAGAGTGTTAAACGTGTTTGA 58.450 33.333 8.19 0.00 34.23 2.69
771 799 4.844267 AGAGTGTTAAACGTGTTTGATGC 58.156 39.130 8.19 0.00 34.23 3.91
772 800 4.574828 AGAGTGTTAAACGTGTTTGATGCT 59.425 37.500 8.19 3.03 34.23 3.79
773 801 4.844267 AGTGTTAAACGTGTTTGATGCTC 58.156 39.130 8.19 0.00 34.23 4.26
774 802 4.334203 AGTGTTAAACGTGTTTGATGCTCA 59.666 37.500 8.19 0.00 34.23 4.26
775 803 5.031578 GTGTTAAACGTGTTTGATGCTCAA 58.968 37.500 8.19 0.00 34.03 3.02
776 804 5.031578 TGTTAAACGTGTTTGATGCTCAAC 58.968 37.500 8.19 3.75 35.89 3.18
777 805 3.773860 AAACGTGTTTGATGCTCAACA 57.226 38.095 0.00 0.00 35.89 3.33
778 806 3.988379 AACGTGTTTGATGCTCAACAT 57.012 38.095 0.00 0.00 43.54 2.71
779 807 3.988379 ACGTGTTTGATGCTCAACATT 57.012 38.095 0.00 0.00 39.84 2.71
780 808 3.631144 ACGTGTTTGATGCTCAACATTG 58.369 40.909 0.00 0.00 39.84 2.82
781 809 2.981805 CGTGTTTGATGCTCAACATTGG 59.018 45.455 0.00 0.00 39.84 3.16
782 810 3.304592 CGTGTTTGATGCTCAACATTGGA 60.305 43.478 0.00 0.00 39.84 3.53
783 811 4.232221 GTGTTTGATGCTCAACATTGGAG 58.768 43.478 0.00 0.00 39.84 3.86
792 820 4.424061 CTCAACATTGGAGCGATTTGAA 57.576 40.909 0.00 0.00 0.00 2.69
793 821 4.159377 TCAACATTGGAGCGATTTGAAC 57.841 40.909 0.00 0.00 0.00 3.18
794 822 3.057596 TCAACATTGGAGCGATTTGAACC 60.058 43.478 0.00 0.00 0.00 3.62
795 823 1.468520 ACATTGGAGCGATTTGAACCG 59.531 47.619 0.00 0.00 0.00 4.44
804 832 4.116713 GCGATTTGAACCGCTAGATAAC 57.883 45.455 0.00 0.00 46.96 1.89
805 833 3.554324 GCGATTTGAACCGCTAGATAACA 59.446 43.478 0.00 0.00 46.96 2.41
806 834 4.211374 GCGATTTGAACCGCTAGATAACAT 59.789 41.667 0.00 0.00 46.96 2.71
807 835 5.670097 CGATTTGAACCGCTAGATAACATG 58.330 41.667 0.00 0.00 0.00 3.21
808 836 5.462068 CGATTTGAACCGCTAGATAACATGA 59.538 40.000 0.00 0.00 0.00 3.07
809 837 6.146184 CGATTTGAACCGCTAGATAACATGAT 59.854 38.462 0.00 0.00 0.00 2.45
810 838 6.844696 TTTGAACCGCTAGATAACATGATC 57.155 37.500 0.00 0.00 0.00 2.92
811 839 5.791336 TGAACCGCTAGATAACATGATCT 57.209 39.130 0.00 0.30 39.54 2.75
812 840 5.532557 TGAACCGCTAGATAACATGATCTG 58.467 41.667 0.00 0.00 36.80 2.90
813 841 5.301805 TGAACCGCTAGATAACATGATCTGA 59.698 40.000 0.00 0.00 36.80 3.27
814 842 5.791336 ACCGCTAGATAACATGATCTGAA 57.209 39.130 0.00 0.00 36.80 3.02
815 843 5.777802 ACCGCTAGATAACATGATCTGAAG 58.222 41.667 0.00 0.00 36.80 3.02
816 844 5.167121 CCGCTAGATAACATGATCTGAAGG 58.833 45.833 0.00 0.26 36.80 3.46
817 845 5.279206 CCGCTAGATAACATGATCTGAAGGT 60.279 44.000 0.00 0.00 36.80 3.50
818 846 6.219473 CGCTAGATAACATGATCTGAAGGTT 58.781 40.000 0.00 0.00 36.80 3.50
819 847 6.145209 CGCTAGATAACATGATCTGAAGGTTG 59.855 42.308 0.00 0.00 36.80 3.77
820 848 7.212976 GCTAGATAACATGATCTGAAGGTTGA 58.787 38.462 0.00 0.00 36.80 3.18
821 849 7.384660 GCTAGATAACATGATCTGAAGGTTGAG 59.615 40.741 0.00 0.00 36.80 3.02
822 850 7.429374 AGATAACATGATCTGAAGGTTGAGA 57.571 36.000 0.00 0.00 34.79 3.27
823 851 8.032045 AGATAACATGATCTGAAGGTTGAGAT 57.968 34.615 0.00 0.00 34.79 2.75
824 852 7.932491 AGATAACATGATCTGAAGGTTGAGATG 59.068 37.037 0.00 0.00 34.79 2.90
825 853 4.778579 ACATGATCTGAAGGTTGAGATGG 58.221 43.478 0.00 0.00 31.14 3.51
826 854 4.226846 ACATGATCTGAAGGTTGAGATGGT 59.773 41.667 0.00 0.00 31.14 3.55
827 855 4.916041 TGATCTGAAGGTTGAGATGGTT 57.084 40.909 0.00 0.00 31.14 3.67
828 856 5.246981 TGATCTGAAGGTTGAGATGGTTT 57.753 39.130 0.00 0.00 31.14 3.27
829 857 5.005740 TGATCTGAAGGTTGAGATGGTTTG 58.994 41.667 0.00 0.00 31.14 2.93
830 858 4.705110 TCTGAAGGTTGAGATGGTTTGA 57.295 40.909 0.00 0.00 0.00 2.69
831 859 5.047566 TCTGAAGGTTGAGATGGTTTGAA 57.952 39.130 0.00 0.00 0.00 2.69
832 860 5.634118 TCTGAAGGTTGAGATGGTTTGAAT 58.366 37.500 0.00 0.00 0.00 2.57
833 861 5.707298 TCTGAAGGTTGAGATGGTTTGAATC 59.293 40.000 0.00 0.00 0.00 2.52
834 862 5.634118 TGAAGGTTGAGATGGTTTGAATCT 58.366 37.500 0.00 0.00 37.09 2.40
835 863 5.474532 TGAAGGTTGAGATGGTTTGAATCTG 59.525 40.000 0.00 0.00 34.50 2.90
836 864 3.760684 AGGTTGAGATGGTTTGAATCTGC 59.239 43.478 0.00 0.00 34.50 4.26
837 865 3.119352 GGTTGAGATGGTTTGAATCTGCC 60.119 47.826 0.00 0.00 34.50 4.85
838 866 2.726821 TGAGATGGTTTGAATCTGCCC 58.273 47.619 0.00 0.00 34.50 5.36
839 867 2.041485 TGAGATGGTTTGAATCTGCCCA 59.959 45.455 0.00 0.00 34.50 5.36
840 868 3.294214 GAGATGGTTTGAATCTGCCCAT 58.706 45.455 0.00 0.00 38.58 4.00
841 869 3.703052 GAGATGGTTTGAATCTGCCCATT 59.297 43.478 0.00 0.00 36.08 3.16
842 870 4.098894 AGATGGTTTGAATCTGCCCATTT 58.901 39.130 0.00 0.00 36.08 2.32
843 871 3.681593 TGGTTTGAATCTGCCCATTTG 57.318 42.857 0.00 0.00 0.00 2.32
844 872 2.302445 TGGTTTGAATCTGCCCATTTGG 59.698 45.455 0.00 0.00 37.09 3.28
845 873 2.566724 GGTTTGAATCTGCCCATTTGGA 59.433 45.455 0.00 0.00 37.39 3.53
846 874 3.198417 GGTTTGAATCTGCCCATTTGGAT 59.802 43.478 0.00 0.00 37.39 3.41
847 875 4.323715 GGTTTGAATCTGCCCATTTGGATT 60.324 41.667 0.00 0.00 37.39 3.01
848 876 5.247862 GTTTGAATCTGCCCATTTGGATTT 58.752 37.500 0.00 0.00 37.39 2.17
849 877 5.502089 TTGAATCTGCCCATTTGGATTTT 57.498 34.783 0.00 0.00 37.39 1.82
850 878 5.502089 TGAATCTGCCCATTTGGATTTTT 57.498 34.783 0.00 0.00 37.39 1.94
884 912 3.902150 AGATATAGATGACGTTGTGCCG 58.098 45.455 0.00 0.00 0.00 5.69
885 913 3.568430 AGATATAGATGACGTTGTGCCGA 59.432 43.478 0.00 0.00 0.00 5.54
943 971 5.163602 GCTATATACCGGAGACAGATTCAGG 60.164 48.000 9.46 0.00 36.20 3.86
1026 1054 2.437359 GAGCCAGCACGCCAGAAT 60.437 61.111 0.00 0.00 0.00 2.40
1056 1084 0.620556 AGATCACAATTGACGGCCCT 59.379 50.000 13.59 0.00 33.38 5.19
1401 1447 0.970937 TCGTCGCCATCCTCTTCCTT 60.971 55.000 0.00 0.00 0.00 3.36
1480 1529 0.324943 GGTTCTGGACCTGCTAAGCA 59.675 55.000 0.00 0.00 45.55 3.91
1583 1680 1.339610 CTACCTCGCTCTTCAGATGGG 59.660 57.143 0.00 0.00 0.00 4.00
1843 1960 2.809174 TGGCGTCGTTGCTCATCG 60.809 61.111 0.00 0.00 34.52 3.84
2023 2140 0.668401 GGCATTGCTCCAAGTTGCAC 60.668 55.000 8.82 0.00 39.05 4.57
2106 2292 5.394553 GCCAAAAGCAATAACAATAGCTCCT 60.395 40.000 0.00 0.00 42.97 3.69
2401 4393 3.261137 GGTACAAGGCCTTCTTCTACTGT 59.739 47.826 17.29 11.53 32.41 3.55
2484 4476 0.618680 CAGACCCATGTCCTCCAGGA 60.619 60.000 0.00 0.00 42.81 3.86
2747 4748 3.948719 GGTTGACACCTCCGGGCA 61.949 66.667 0.00 0.00 40.44 5.36
2908 4909 3.137544 TGCTCGTGAACCCCCATTTATAT 59.862 43.478 0.00 0.00 0.00 0.86
3071 5072 3.190874 GTCATAGCTGCACTGTTCCTAC 58.809 50.000 1.02 0.00 0.00 3.18
3072 5073 2.168521 TCATAGCTGCACTGTTCCTACC 59.831 50.000 1.02 0.00 0.00 3.18
3400 5443 7.054124 TGGATAAGAATAAAGAATGGTCGCTT 58.946 34.615 0.00 0.00 0.00 4.68
3418 5467 3.064207 GCTTAAGGTCATGAACACGACA 58.936 45.455 14.46 0.00 33.66 4.35
3436 5485 3.656559 GACAATTGTGCTGGATTTGCTT 58.343 40.909 17.58 0.00 0.00 3.91
3442 5491 1.217244 GCTGGATTTGCTTGCCCTG 59.783 57.895 0.00 0.00 0.00 4.45
3460 5509 1.302033 GCTAGTGGCATATGCGGCT 60.302 57.895 21.04 21.03 43.26 5.52
3502 5551 2.463876 ACATCTGTGTATGTCATCGCG 58.536 47.619 0.00 0.00 35.08 5.87
3564 5613 2.419673 TGCTGGCATTGTTATGTTCTCG 59.580 45.455 0.00 0.00 34.12 4.04
3574 5623 6.887376 TTGTTATGTTCTCGTTCTCATAGC 57.113 37.500 0.00 0.00 0.00 2.97
3579 5628 1.095600 TCTCGTTCTCATAGCGCTGT 58.904 50.000 22.90 11.62 0.00 4.40
3588 5637 1.135046 CATAGCGCTGTCATTCCTCG 58.865 55.000 22.90 0.00 0.00 4.63
3597 5646 1.087501 GTCATTCCTCGGCAAAGGAC 58.912 55.000 5.84 0.00 45.20 3.85
3602 5651 1.078848 CCTCGGCAAAGGACTCCAG 60.079 63.158 0.00 0.00 38.87 3.86
3652 5701 1.741401 CGCGAGGAATCAGGCACAA 60.741 57.895 0.00 0.00 0.00 3.33
3670 5719 3.556365 CACAATTTGCTGCAATGTCAACA 59.444 39.130 16.77 0.00 0.00 3.33
3693 5749 6.144854 CACCTTGATTATCAGTGTGTTTGTG 58.855 40.000 14.15 4.67 30.21 3.33
3725 5831 0.318529 CGAGGAGTGGATGCGATCTG 60.319 60.000 0.00 0.00 0.00 2.90
3851 6076 7.756614 AGTTTCTCCCTATTCTTAGTTTTGGT 58.243 34.615 0.00 0.00 0.00 3.67
3870 6098 2.164624 GGTCGTAGCTTGTCATCTCTGT 59.835 50.000 0.00 0.00 0.00 3.41
3881 6109 5.474578 TGTCATCTCTGTTATGCCCTATC 57.525 43.478 0.00 0.00 0.00 2.08
3976 6507 4.627467 GCTAGTATGTTCGAGCATATTGGG 59.373 45.833 22.47 16.12 36.39 4.12
3982 6513 5.913137 TGTTCGAGCATATTGGGAAAAAT 57.087 34.783 0.00 0.00 0.00 1.82
3983 6514 7.581213 ATGTTCGAGCATATTGGGAAAAATA 57.419 32.000 13.55 0.00 0.00 1.40
4002 6533 9.959749 GAAAAATATATACATTTTTGCCTCGGA 57.040 29.630 17.03 0.00 44.26 4.55
4011 6542 5.184864 ACATTTTTGCCTCGGACATATTTGA 59.815 36.000 0.00 0.00 0.00 2.69
4014 6545 2.639065 TGCCTCGGACATATTTGAACC 58.361 47.619 0.00 0.00 0.00 3.62
4023 6554 1.136110 CATATTTGAACCCGGGTTGGC 59.864 52.381 42.92 28.70 38.60 4.52
4049 6580 1.988107 ACCTGAATCCAGTGGATGTGT 59.012 47.619 25.51 16.00 42.27 3.72
4481 7397 5.301551 TCACGCCAAATGCTCCAAATAATAT 59.698 36.000 0.00 0.00 38.05 1.28
4486 7402 6.225318 CCAAATGCTCCAAATAATATGGTGG 58.775 40.000 0.00 0.00 39.09 4.61
4560 7477 1.177256 AGCCACCGTCACGTAGAAGT 61.177 55.000 0.00 0.00 0.00 3.01
4581 7498 5.014858 AGTAAGTTATCCTGAGGAACGACA 58.985 41.667 4.76 0.00 34.34 4.35
4583 7500 5.422214 AAGTTATCCTGAGGAACGACATT 57.578 39.130 4.76 0.00 34.34 2.71
4585 7502 2.698855 ATCCTGAGGAACGACATTGG 57.301 50.000 4.76 0.00 34.34 3.16
4608 7525 2.877786 CAAATTGGCCCAAAGAAACACC 59.122 45.455 0.00 0.00 0.00 4.16
4614 7531 2.223745 GCCCAAAGAAACACCGAACTA 58.776 47.619 0.00 0.00 0.00 2.24
4630 7547 4.260907 CCGAACTACAGATAATCCGAACGA 60.261 45.833 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.170607 ACCAGTGATCCCGGATAAACAG 59.829 50.000 0.73 0.00 0.00 3.16
1 2 2.093181 CACCAGTGATCCCGGATAAACA 60.093 50.000 0.73 0.00 0.00 2.83
2 3 2.561569 CACCAGTGATCCCGGATAAAC 58.438 52.381 0.73 2.32 0.00 2.01
3 4 1.134220 GCACCAGTGATCCCGGATAAA 60.134 52.381 0.73 0.00 0.00 1.40
4 5 0.468226 GCACCAGTGATCCCGGATAA 59.532 55.000 0.73 0.00 0.00 1.75
5 6 0.398522 AGCACCAGTGATCCCGGATA 60.399 55.000 0.73 0.00 0.00 2.59
6 7 1.690219 GAGCACCAGTGATCCCGGAT 61.690 60.000 0.73 0.00 39.88 4.18
7 8 2.284625 AGCACCAGTGATCCCGGA 60.285 61.111 0.73 0.00 0.00 5.14
8 9 2.187946 GAGCACCAGTGATCCCGG 59.812 66.667 4.71 0.00 39.88 5.73
9 10 2.202797 CGAGCACCAGTGATCCCG 60.203 66.667 10.23 0.00 42.54 5.14
10 11 2.187946 CCGAGCACCAGTGATCCC 59.812 66.667 10.23 0.00 42.54 3.85
11 12 1.690219 ATCCCGAGCACCAGTGATCC 61.690 60.000 10.23 0.00 42.54 3.36
12 13 0.249657 GATCCCGAGCACCAGTGATC 60.250 60.000 5.98 5.98 42.13 2.92
13 14 1.826024 GATCCCGAGCACCAGTGAT 59.174 57.895 0.99 0.00 0.00 3.06
14 15 2.710902 CGATCCCGAGCACCAGTGA 61.711 63.158 0.99 0.00 38.22 3.41
15 16 2.202797 CGATCCCGAGCACCAGTG 60.203 66.667 0.00 0.00 38.22 3.66
16 17 4.148825 GCGATCCCGAGCACCAGT 62.149 66.667 0.00 0.00 38.22 4.00
17 18 3.451556 ATGCGATCCCGAGCACCAG 62.452 63.158 0.00 0.00 46.83 4.00
18 19 3.469970 ATGCGATCCCGAGCACCA 61.470 61.111 0.00 0.00 46.83 4.17
19 20 2.969238 CATGCGATCCCGAGCACC 60.969 66.667 0.00 0.00 46.83 5.01
20 21 3.643978 GCATGCGATCCCGAGCAC 61.644 66.667 0.00 0.00 46.83 4.40
22 23 3.040763 GAGCATGCGATCCCGAGC 61.041 66.667 13.01 0.00 38.22 5.03
23 24 2.356793 GGAGCATGCGATCCCGAG 60.357 66.667 13.01 0.00 42.23 4.63
28 29 0.533531 TGGACATGGAGCATGCGATC 60.534 55.000 13.01 5.10 44.80 3.69
29 30 0.816825 GTGGACATGGAGCATGCGAT 60.817 55.000 13.01 2.92 44.80 4.58
30 31 1.450134 GTGGACATGGAGCATGCGA 60.450 57.895 13.01 0.19 44.80 5.10
31 32 1.434622 GAGTGGACATGGAGCATGCG 61.435 60.000 13.01 0.00 44.80 4.73
32 33 0.393402 TGAGTGGACATGGAGCATGC 60.393 55.000 10.51 10.51 44.80 4.06
33 34 2.343484 ATGAGTGGACATGGAGCATG 57.657 50.000 0.00 0.00 46.18 4.06
34 35 3.008813 GGATATGAGTGGACATGGAGCAT 59.991 47.826 0.00 0.00 0.00 3.79
35 36 2.369860 GGATATGAGTGGACATGGAGCA 59.630 50.000 0.00 0.00 0.00 4.26
36 37 2.369860 TGGATATGAGTGGACATGGAGC 59.630 50.000 0.00 0.00 0.00 4.70
37 38 3.556633 GCTGGATATGAGTGGACATGGAG 60.557 52.174 0.00 0.00 0.00 3.86
38 39 2.369860 GCTGGATATGAGTGGACATGGA 59.630 50.000 0.00 0.00 0.00 3.41
39 40 2.371179 AGCTGGATATGAGTGGACATGG 59.629 50.000 0.00 0.00 0.00 3.66
40 41 3.766068 AGCTGGATATGAGTGGACATG 57.234 47.619 0.00 0.00 0.00 3.21
41 42 3.713248 TGAAGCTGGATATGAGTGGACAT 59.287 43.478 0.00 0.00 0.00 3.06
42 43 3.106827 TGAAGCTGGATATGAGTGGACA 58.893 45.455 0.00 0.00 0.00 4.02
43 44 3.462021 GTGAAGCTGGATATGAGTGGAC 58.538 50.000 0.00 0.00 0.00 4.02
44 45 2.101415 CGTGAAGCTGGATATGAGTGGA 59.899 50.000 0.00 0.00 0.00 4.02
45 46 2.159043 ACGTGAAGCTGGATATGAGTGG 60.159 50.000 0.00 0.00 0.00 4.00
46 47 3.170791 ACGTGAAGCTGGATATGAGTG 57.829 47.619 0.00 0.00 0.00 3.51
154 155 1.396996 GCGTACAGCCATTCGACAAAT 59.603 47.619 0.00 0.00 40.81 2.32
169 170 2.954318 TCCAGATAAGGTACAGGCGTAC 59.046 50.000 9.98 9.98 46.18 3.67
170 171 2.954318 GTCCAGATAAGGTACAGGCGTA 59.046 50.000 0.00 0.00 0.00 4.42
171 172 1.755380 GTCCAGATAAGGTACAGGCGT 59.245 52.381 0.00 0.00 0.00 5.68
172 173 2.032620 AGTCCAGATAAGGTACAGGCG 58.967 52.381 0.00 0.00 0.00 5.52
173 174 3.031736 TGAGTCCAGATAAGGTACAGGC 58.968 50.000 0.00 0.00 0.00 4.85
174 175 4.466370 TGTTGAGTCCAGATAAGGTACAGG 59.534 45.833 0.00 0.00 0.00 4.00
191 192 2.401766 GCAGGCACCGGATGTTGAG 61.402 63.158 9.46 0.00 0.00 3.02
205 206 4.087892 CACGAGGGAGGGTGCAGG 62.088 72.222 0.00 0.00 0.00 4.85
375 402 1.810755 GTAAAGGTAGCTGGTTGCCAC 59.189 52.381 0.00 0.00 44.23 5.01
446 473 2.298158 ATCAGCACCCGACGGACATC 62.298 60.000 17.49 1.22 0.00 3.06
458 485 1.021390 CAGGGTCGTTGGATCAGCAC 61.021 60.000 0.00 0.00 0.00 4.40
476 503 9.775854 ATTTCAACCAAATTTATCATTCACACA 57.224 25.926 0.00 0.00 29.60 3.72
496 524 5.537188 AGCAATAGAAAAACGGCATTTCAA 58.463 33.333 10.93 0.00 38.86 2.69
499 527 5.408299 GGAAAGCAATAGAAAAACGGCATTT 59.592 36.000 0.00 0.00 0.00 2.32
536 564 8.922676 GCATTGCACGTACATTATTACTAGTAT 58.077 33.333 2.79 0.00 0.00 2.12
537 565 7.921745 TGCATTGCACGTACATTATTACTAGTA 59.078 33.333 7.38 0.00 31.71 1.82
538 566 6.759356 TGCATTGCACGTACATTATTACTAGT 59.241 34.615 7.38 0.00 31.71 2.57
539 567 7.172654 TGCATTGCACGTACATTATTACTAG 57.827 36.000 7.38 0.00 31.71 2.57
555 583 7.496263 TCTTACCTAATATAAACGTGCATTGCA 59.504 33.333 7.38 7.38 35.60 4.08
556 584 7.857569 TCTTACCTAATATAAACGTGCATTGC 58.142 34.615 0.46 0.46 0.00 3.56
599 627 8.585881 ACGTGCAACTGATATATCTTACCTAAT 58.414 33.333 13.79 0.00 31.75 1.73
600 628 7.948357 ACGTGCAACTGATATATCTTACCTAA 58.052 34.615 13.79 0.00 31.75 2.69
601 629 7.520451 ACGTGCAACTGATATATCTTACCTA 57.480 36.000 13.79 0.00 31.75 3.08
602 630 6.406692 ACGTGCAACTGATATATCTTACCT 57.593 37.500 13.79 0.00 31.75 3.08
603 631 6.700081 TCAACGTGCAACTGATATATCTTACC 59.300 38.462 13.79 0.37 31.75 2.85
604 632 7.694388 TCAACGTGCAACTGATATATCTTAC 57.306 36.000 13.79 0.00 31.75 2.34
606 634 9.494271 AATATCAACGTGCAACTGATATATCTT 57.506 29.630 19.23 8.31 41.23 2.40
607 635 9.494271 AAATATCAACGTGCAACTGATATATCT 57.506 29.630 19.23 8.03 41.23 1.98
608 636 9.533983 CAAATATCAACGTGCAACTGATATATC 57.466 33.333 19.23 5.73 41.23 1.63
609 637 8.506437 CCAAATATCAACGTGCAACTGATATAT 58.494 33.333 19.23 11.36 41.23 0.86
610 638 7.497579 ACCAAATATCAACGTGCAACTGATATA 59.502 33.333 19.23 3.96 41.23 0.86
611 639 6.318648 ACCAAATATCAACGTGCAACTGATAT 59.681 34.615 15.64 15.64 42.82 1.63
612 640 5.645929 ACCAAATATCAACGTGCAACTGATA 59.354 36.000 13.21 13.21 38.05 2.15
613 641 4.458989 ACCAAATATCAACGTGCAACTGAT 59.541 37.500 10.34 10.34 36.03 2.90
614 642 3.818210 ACCAAATATCAACGTGCAACTGA 59.182 39.130 0.00 0.00 31.75 3.41
615 643 4.159377 ACCAAATATCAACGTGCAACTG 57.841 40.909 0.00 0.00 31.75 3.16
616 644 5.703592 TCTTACCAAATATCAACGTGCAACT 59.296 36.000 0.00 0.00 31.75 3.16
617 645 5.933790 TCTTACCAAATATCAACGTGCAAC 58.066 37.500 0.00 0.00 0.00 4.17
618 646 6.751514 ATCTTACCAAATATCAACGTGCAA 57.248 33.333 0.00 0.00 0.00 4.08
619 647 7.713073 TGATATCTTACCAAATATCAACGTGCA 59.287 33.333 3.98 0.00 40.28 4.57
620 648 8.083462 TGATATCTTACCAAATATCAACGTGC 57.917 34.615 3.98 0.00 40.28 5.34
662 690 9.466497 CTGCCATGTAATTAATATCCTACCATT 57.534 33.333 0.00 0.00 0.00 3.16
663 691 8.835734 TCTGCCATGTAATTAATATCCTACCAT 58.164 33.333 0.00 0.00 0.00 3.55
664 692 8.213489 TCTGCCATGTAATTAATATCCTACCA 57.787 34.615 0.00 0.00 0.00 3.25
665 693 9.686683 AATCTGCCATGTAATTAATATCCTACC 57.313 33.333 0.00 0.00 0.00 3.18
668 696 9.812347 TGAAATCTGCCATGTAATTAATATCCT 57.188 29.630 0.00 0.00 0.00 3.24
671 699 9.028284 CCCTGAAATCTGCCATGTAATTAATAT 57.972 33.333 0.00 0.00 0.00 1.28
672 700 7.451255 CCCCTGAAATCTGCCATGTAATTAATA 59.549 37.037 0.00 0.00 0.00 0.98
673 701 6.268387 CCCCTGAAATCTGCCATGTAATTAAT 59.732 38.462 0.00 0.00 0.00 1.40
674 702 5.598005 CCCCTGAAATCTGCCATGTAATTAA 59.402 40.000 0.00 0.00 0.00 1.40
675 703 5.103728 TCCCCTGAAATCTGCCATGTAATTA 60.104 40.000 0.00 0.00 0.00 1.40
676 704 3.962718 CCCCTGAAATCTGCCATGTAATT 59.037 43.478 0.00 0.00 0.00 1.40
677 705 3.205056 TCCCCTGAAATCTGCCATGTAAT 59.795 43.478 0.00 0.00 0.00 1.89
678 706 2.580322 TCCCCTGAAATCTGCCATGTAA 59.420 45.455 0.00 0.00 0.00 2.41
679 707 2.204463 TCCCCTGAAATCTGCCATGTA 58.796 47.619 0.00 0.00 0.00 2.29
680 708 1.002069 TCCCCTGAAATCTGCCATGT 58.998 50.000 0.00 0.00 0.00 3.21
681 709 2.376695 ATCCCCTGAAATCTGCCATG 57.623 50.000 0.00 0.00 0.00 3.66
682 710 2.224967 GCTATCCCCTGAAATCTGCCAT 60.225 50.000 0.00 0.00 0.00 4.40
683 711 1.143684 GCTATCCCCTGAAATCTGCCA 59.856 52.381 0.00 0.00 0.00 4.92
684 712 1.879796 CGCTATCCCCTGAAATCTGCC 60.880 57.143 0.00 0.00 0.00 4.85
685 713 1.202698 ACGCTATCCCCTGAAATCTGC 60.203 52.381 0.00 0.00 0.00 4.26
686 714 2.874701 CAACGCTATCCCCTGAAATCTG 59.125 50.000 0.00 0.00 0.00 2.90
687 715 2.771943 TCAACGCTATCCCCTGAAATCT 59.228 45.455 0.00 0.00 0.00 2.40
688 716 3.134458 CTCAACGCTATCCCCTGAAATC 58.866 50.000 0.00 0.00 0.00 2.17
689 717 2.505819 ACTCAACGCTATCCCCTGAAAT 59.494 45.455 0.00 0.00 0.00 2.17
690 718 1.906574 ACTCAACGCTATCCCCTGAAA 59.093 47.619 0.00 0.00 0.00 2.69
691 719 1.480954 GACTCAACGCTATCCCCTGAA 59.519 52.381 0.00 0.00 0.00 3.02
692 720 1.112113 GACTCAACGCTATCCCCTGA 58.888 55.000 0.00 0.00 0.00 3.86
693 721 0.824109 TGACTCAACGCTATCCCCTG 59.176 55.000 0.00 0.00 0.00 4.45
694 722 1.568504 TTGACTCAACGCTATCCCCT 58.431 50.000 0.00 0.00 0.00 4.79
695 723 2.396590 TTTGACTCAACGCTATCCCC 57.603 50.000 0.00 0.00 0.00 4.81
696 724 2.093783 CGTTTTGACTCAACGCTATCCC 59.906 50.000 0.00 0.00 40.49 3.85
697 725 3.369835 CGTTTTGACTCAACGCTATCC 57.630 47.619 0.00 0.00 40.49 2.59
704 732 7.188157 TGGTTATAAACACGTTTTGACTCAAC 58.812 34.615 0.00 0.00 34.23 3.18
705 733 7.317842 TGGTTATAAACACGTTTTGACTCAA 57.682 32.000 0.00 0.00 34.23 3.02
706 734 6.922247 TGGTTATAAACACGTTTTGACTCA 57.078 33.333 0.00 0.00 34.23 3.41
707 735 7.325097 CCATTGGTTATAAACACGTTTTGACTC 59.675 37.037 1.72 0.00 34.23 3.36
708 736 7.142680 CCATTGGTTATAAACACGTTTTGACT 58.857 34.615 1.72 0.00 34.23 3.41
709 737 6.129035 GCCATTGGTTATAAACACGTTTTGAC 60.129 38.462 1.72 0.00 34.23 3.18
710 738 5.921408 GCCATTGGTTATAAACACGTTTTGA 59.079 36.000 1.72 0.00 34.23 2.69
711 739 5.692204 TGCCATTGGTTATAAACACGTTTTG 59.308 36.000 1.72 0.00 34.23 2.44
712 740 5.844004 TGCCATTGGTTATAAACACGTTTT 58.156 33.333 1.72 0.00 34.23 2.43
713 741 5.010213 ACTGCCATTGGTTATAAACACGTTT 59.990 36.000 1.72 0.22 36.63 3.60
714 742 4.521256 ACTGCCATTGGTTATAAACACGTT 59.479 37.500 1.72 0.00 0.00 3.99
715 743 4.076394 ACTGCCATTGGTTATAAACACGT 58.924 39.130 1.72 0.00 0.00 4.49
716 744 4.411327 CACTGCCATTGGTTATAAACACG 58.589 43.478 1.72 0.00 0.00 4.49
717 745 4.219725 ACCACTGCCATTGGTTATAAACAC 59.780 41.667 1.72 0.00 45.62 3.32
718 746 4.219507 CACCACTGCCATTGGTTATAAACA 59.780 41.667 3.63 0.00 45.62 2.83
719 747 4.381505 CCACCACTGCCATTGGTTATAAAC 60.382 45.833 3.63 0.00 45.62 2.01
720 748 3.766591 CCACCACTGCCATTGGTTATAAA 59.233 43.478 3.63 0.00 45.62 1.40
721 749 3.360867 CCACCACTGCCATTGGTTATAA 58.639 45.455 3.63 0.00 45.62 0.98
722 750 2.357673 CCCACCACTGCCATTGGTTATA 60.358 50.000 3.63 0.00 45.62 0.98
723 751 1.619432 CCCACCACTGCCATTGGTTAT 60.619 52.381 3.63 0.00 45.62 1.89
724 752 0.251564 CCCACCACTGCCATTGGTTA 60.252 55.000 3.63 0.00 45.62 2.85
725 753 1.533753 CCCACCACTGCCATTGGTT 60.534 57.895 3.63 0.00 45.62 3.67
727 755 0.251564 TTACCCACCACTGCCATTGG 60.252 55.000 0.00 0.00 40.32 3.16
728 756 1.851304 ATTACCCACCACTGCCATTG 58.149 50.000 0.00 0.00 0.00 2.82
729 757 2.621556 AATTACCCACCACTGCCATT 57.378 45.000 0.00 0.00 0.00 3.16
730 758 2.849943 TCTAATTACCCACCACTGCCAT 59.150 45.455 0.00 0.00 0.00 4.40
731 759 2.238646 CTCTAATTACCCACCACTGCCA 59.761 50.000 0.00 0.00 0.00 4.92
732 760 2.238898 ACTCTAATTACCCACCACTGCC 59.761 50.000 0.00 0.00 0.00 4.85
733 761 3.270877 CACTCTAATTACCCACCACTGC 58.729 50.000 0.00 0.00 0.00 4.40
734 762 4.553330 ACACTCTAATTACCCACCACTG 57.447 45.455 0.00 0.00 0.00 3.66
735 763 6.691255 TTAACACTCTAATTACCCACCACT 57.309 37.500 0.00 0.00 0.00 4.00
736 764 6.128472 CGTTTAACACTCTAATTACCCACCAC 60.128 42.308 0.00 0.00 0.00 4.16
737 765 5.933463 CGTTTAACACTCTAATTACCCACCA 59.067 40.000 0.00 0.00 0.00 4.17
738 766 5.934043 ACGTTTAACACTCTAATTACCCACC 59.066 40.000 0.00 0.00 0.00 4.61
739 767 6.424812 ACACGTTTAACACTCTAATTACCCAC 59.575 38.462 0.00 0.00 0.00 4.61
740 768 6.523840 ACACGTTTAACACTCTAATTACCCA 58.476 36.000 0.00 0.00 0.00 4.51
741 769 7.425577 AACACGTTTAACACTCTAATTACCC 57.574 36.000 0.00 0.00 0.00 3.69
742 770 8.550376 TCAAACACGTTTAACACTCTAATTACC 58.450 33.333 0.00 0.00 0.00 2.85
745 773 7.589954 GCATCAAACACGTTTAACACTCTAATT 59.410 33.333 0.00 0.00 0.00 1.40
746 774 7.041372 AGCATCAAACACGTTTAACACTCTAAT 60.041 33.333 0.00 0.00 0.00 1.73
747 775 6.259167 AGCATCAAACACGTTTAACACTCTAA 59.741 34.615 0.00 0.00 0.00 2.10
748 776 5.756347 AGCATCAAACACGTTTAACACTCTA 59.244 36.000 0.00 0.00 0.00 2.43
749 777 4.574828 AGCATCAAACACGTTTAACACTCT 59.425 37.500 0.00 0.00 0.00 3.24
750 778 4.844267 AGCATCAAACACGTTTAACACTC 58.156 39.130 0.00 0.00 0.00 3.51
751 779 4.334203 TGAGCATCAAACACGTTTAACACT 59.666 37.500 0.00 0.00 45.97 3.55
752 780 4.593157 TGAGCATCAAACACGTTTAACAC 58.407 39.130 0.00 0.00 45.97 3.32
753 781 4.884458 TGAGCATCAAACACGTTTAACA 57.116 36.364 0.00 0.00 45.97 2.41
767 795 1.372582 TCGCTCCAATGTTGAGCATC 58.627 50.000 12.22 0.00 41.64 3.91
768 796 2.048444 ATCGCTCCAATGTTGAGCAT 57.952 45.000 12.22 3.08 41.64 3.79
769 797 1.825090 AATCGCTCCAATGTTGAGCA 58.175 45.000 12.22 1.02 41.64 4.26
770 798 2.162208 TCAAATCGCTCCAATGTTGAGC 59.838 45.455 2.24 2.24 38.48 4.26
771 799 4.161333 GTTCAAATCGCTCCAATGTTGAG 58.839 43.478 0.00 0.00 0.00 3.02
772 800 3.057596 GGTTCAAATCGCTCCAATGTTGA 60.058 43.478 0.00 0.00 0.00 3.18
773 801 3.244976 GGTTCAAATCGCTCCAATGTTG 58.755 45.455 0.00 0.00 0.00 3.33
774 802 2.095263 CGGTTCAAATCGCTCCAATGTT 60.095 45.455 0.00 0.00 0.00 2.71
775 803 1.468520 CGGTTCAAATCGCTCCAATGT 59.531 47.619 0.00 0.00 0.00 2.71
776 804 2.178474 CGGTTCAAATCGCTCCAATG 57.822 50.000 0.00 0.00 0.00 2.82
784 812 5.462068 TCATGTTATCTAGCGGTTCAAATCG 59.538 40.000 0.00 0.00 35.16 3.34
785 813 6.844696 TCATGTTATCTAGCGGTTCAAATC 57.155 37.500 0.00 0.00 0.00 2.17
786 814 7.172190 CAGATCATGTTATCTAGCGGTTCAAAT 59.828 37.037 0.00 0.00 34.40 2.32
787 815 6.479990 CAGATCATGTTATCTAGCGGTTCAAA 59.520 38.462 0.00 0.00 34.40 2.69
788 816 5.985530 CAGATCATGTTATCTAGCGGTTCAA 59.014 40.000 0.00 0.00 34.40 2.69
789 817 5.301805 TCAGATCATGTTATCTAGCGGTTCA 59.698 40.000 0.00 0.00 34.40 3.18
790 818 5.773575 TCAGATCATGTTATCTAGCGGTTC 58.226 41.667 0.00 0.00 34.40 3.62
791 819 5.791336 TCAGATCATGTTATCTAGCGGTT 57.209 39.130 0.00 0.00 34.40 4.44
792 820 5.279206 CCTTCAGATCATGTTATCTAGCGGT 60.279 44.000 0.00 0.00 34.40 5.68
793 821 5.167121 CCTTCAGATCATGTTATCTAGCGG 58.833 45.833 0.00 0.00 34.40 5.52
794 822 5.777802 ACCTTCAGATCATGTTATCTAGCG 58.222 41.667 0.00 0.00 34.40 4.26
795 823 7.212976 TCAACCTTCAGATCATGTTATCTAGC 58.787 38.462 0.00 0.00 34.40 3.42
796 824 8.637099 TCTCAACCTTCAGATCATGTTATCTAG 58.363 37.037 0.00 0.00 34.40 2.43
797 825 8.539117 TCTCAACCTTCAGATCATGTTATCTA 57.461 34.615 0.00 0.00 34.40 1.98
798 826 7.429374 TCTCAACCTTCAGATCATGTTATCT 57.571 36.000 0.00 0.00 36.64 1.98
799 827 7.172875 CCATCTCAACCTTCAGATCATGTTATC 59.827 40.741 0.00 0.00 0.00 1.75
800 828 6.996879 CCATCTCAACCTTCAGATCATGTTAT 59.003 38.462 0.00 0.00 0.00 1.89
801 829 6.070021 ACCATCTCAACCTTCAGATCATGTTA 60.070 38.462 0.00 0.00 0.00 2.41
802 830 5.191426 CCATCTCAACCTTCAGATCATGTT 58.809 41.667 0.00 0.00 0.00 2.71
803 831 4.226846 ACCATCTCAACCTTCAGATCATGT 59.773 41.667 0.00 0.00 0.00 3.21
804 832 4.778579 ACCATCTCAACCTTCAGATCATG 58.221 43.478 0.00 0.00 0.00 3.07
805 833 5.447778 AACCATCTCAACCTTCAGATCAT 57.552 39.130 0.00 0.00 0.00 2.45
806 834 4.916041 AACCATCTCAACCTTCAGATCA 57.084 40.909 0.00 0.00 0.00 2.92
807 835 5.248640 TCAAACCATCTCAACCTTCAGATC 58.751 41.667 0.00 0.00 0.00 2.75
808 836 5.246981 TCAAACCATCTCAACCTTCAGAT 57.753 39.130 0.00 0.00 0.00 2.90
809 837 4.705110 TCAAACCATCTCAACCTTCAGA 57.295 40.909 0.00 0.00 0.00 3.27
810 838 5.709164 AGATTCAAACCATCTCAACCTTCAG 59.291 40.000 0.00 0.00 0.00 3.02
811 839 5.474532 CAGATTCAAACCATCTCAACCTTCA 59.525 40.000 0.00 0.00 0.00 3.02
812 840 5.620879 GCAGATTCAAACCATCTCAACCTTC 60.621 44.000 0.00 0.00 0.00 3.46
813 841 4.219288 GCAGATTCAAACCATCTCAACCTT 59.781 41.667 0.00 0.00 0.00 3.50
814 842 3.760684 GCAGATTCAAACCATCTCAACCT 59.239 43.478 0.00 0.00 0.00 3.50
815 843 3.119352 GGCAGATTCAAACCATCTCAACC 60.119 47.826 0.00 0.00 0.00 3.77
816 844 3.119352 GGGCAGATTCAAACCATCTCAAC 60.119 47.826 0.00 0.00 0.00 3.18
817 845 3.091545 GGGCAGATTCAAACCATCTCAA 58.908 45.455 0.00 0.00 0.00 3.02
818 846 2.041485 TGGGCAGATTCAAACCATCTCA 59.959 45.455 0.00 0.00 0.00 3.27
819 847 2.726821 TGGGCAGATTCAAACCATCTC 58.273 47.619 0.00 0.00 0.00 2.75
820 848 2.905415 TGGGCAGATTCAAACCATCT 57.095 45.000 0.00 0.00 0.00 2.90
821 849 4.186159 CAAATGGGCAGATTCAAACCATC 58.814 43.478 0.00 0.00 40.84 3.51
822 850 3.054948 CCAAATGGGCAGATTCAAACCAT 60.055 43.478 0.00 0.00 43.39 3.55
823 851 2.302445 CCAAATGGGCAGATTCAAACCA 59.698 45.455 0.00 0.00 35.39 3.67
824 852 2.566724 TCCAAATGGGCAGATTCAAACC 59.433 45.455 0.00 0.00 36.21 3.27
825 853 3.959535 TCCAAATGGGCAGATTCAAAC 57.040 42.857 0.00 0.00 36.21 2.93
826 854 5.502089 AAATCCAAATGGGCAGATTCAAA 57.498 34.783 0.00 0.00 36.21 2.69
827 855 5.502089 AAAATCCAAATGGGCAGATTCAA 57.498 34.783 0.00 0.00 36.21 2.69
828 856 5.502089 AAAAATCCAAATGGGCAGATTCA 57.498 34.783 0.00 0.00 36.21 2.57
856 884 8.027189 GCACAACGTCATCTATATCTATACCAA 58.973 37.037 0.00 0.00 0.00 3.67
857 885 7.362660 GGCACAACGTCATCTATATCTATACCA 60.363 40.741 0.00 0.00 0.00 3.25
858 886 6.973474 GGCACAACGTCATCTATATCTATACC 59.027 42.308 0.00 0.00 0.00 2.73
859 887 6.687531 CGGCACAACGTCATCTATATCTATAC 59.312 42.308 0.00 0.00 0.00 1.47
864 892 3.897325 TCGGCACAACGTCATCTATATC 58.103 45.455 0.00 0.00 34.94 1.63
865 893 3.318275 ACTCGGCACAACGTCATCTATAT 59.682 43.478 0.00 0.00 34.94 0.86
869 897 0.033504 AACTCGGCACAACGTCATCT 59.966 50.000 0.00 0.00 34.94 2.90
870 898 0.163788 CAACTCGGCACAACGTCATC 59.836 55.000 0.00 0.00 34.94 2.92
879 907 0.950555 TCAGCATGACAACTCGGCAC 60.951 55.000 0.00 0.00 42.56 5.01
881 909 4.284123 TCAGCATGACAACTCGGC 57.716 55.556 0.00 0.00 42.56 5.54
943 971 3.841643 TCGACGGAATTAAGGACAAGAC 58.158 45.455 0.00 0.00 0.00 3.01
1026 1054 4.019411 TCAATTGTGATCTCAGTTGGGCTA 60.019 41.667 24.13 9.44 36.28 3.93
1056 1084 1.493861 CAGGAGAAGGATCTGGCTCA 58.506 55.000 10.05 0.00 35.54 4.26
1062 1090 0.252881 TGGTGGCAGGAGAAGGATCT 60.253 55.000 0.00 0.00 39.10 2.75
1209 1255 2.534019 GGCATATGTCACCGTGGCG 61.534 63.158 1.45 0.00 0.00 5.69
1401 1447 0.762418 TTTTCTCTTCCACGAGGGCA 59.238 50.000 0.00 0.00 36.21 5.36
1465 1514 2.219458 CATGATGCTTAGCAGGTCCAG 58.781 52.381 13.74 0.00 43.65 3.86
1480 1529 1.681666 CGGCATAGGCTCCCATGAT 59.318 57.895 0.00 0.00 40.87 2.45
1843 1960 0.946221 CTGTCCAGAAGCACCACGAC 60.946 60.000 0.00 0.00 0.00 4.34
2106 2292 2.100197 CTGTCATTAGTCTCCGGACCA 58.900 52.381 0.00 0.00 43.05 4.02
2401 4393 4.603511 GGCTACAAAGGCGACGGAGTTA 62.604 54.545 0.00 0.00 39.03 2.24
2484 4476 4.307032 AACAAGTCCAGTATCATGGCTT 57.693 40.909 0.00 0.00 40.41 4.35
2908 4909 1.200519 AACTTCGTATGGCTGGCCTA 58.799 50.000 13.05 0.04 36.94 3.93
3140 5180 2.849880 TATTTTCGCTTGGCATGCTC 57.150 45.000 18.92 8.46 0.00 4.26
3374 5414 6.708054 AGCGACCATTCTTTATTCTTATCCAG 59.292 38.462 0.00 0.00 0.00 3.86
3400 5443 5.049749 CACAATTGTCGTGTTCATGACCTTA 60.050 40.000 8.48 7.92 34.18 2.69
3418 5467 2.419667 GCAAGCAAATCCAGCACAATT 58.580 42.857 0.00 0.00 0.00 2.32
3442 5491 1.302033 AGCCGCATATGCCACTAGC 60.302 57.895 21.77 15.70 44.14 3.42
3460 5509 3.016971 CACCCCCTGCTGGATCCA 61.017 66.667 15.27 15.27 35.39 3.41
3502 5551 1.953138 CAGGACGGCGATGATCAGC 60.953 63.158 16.62 0.00 0.00 4.26
3564 5613 2.541762 GGAATGACAGCGCTATGAGAAC 59.458 50.000 10.99 0.00 0.00 3.01
3574 5623 1.298157 TTTGCCGAGGAATGACAGCG 61.298 55.000 0.00 0.00 0.00 5.18
3579 5628 0.984230 AGTCCTTTGCCGAGGAATGA 59.016 50.000 6.73 0.00 46.95 2.57
3588 5637 2.747855 CGCCTGGAGTCCTTTGCC 60.748 66.667 11.33 0.00 0.00 4.52
3602 5651 1.153765 GAGAATTTGCTTGGGCGCC 60.154 57.895 21.18 21.18 42.25 6.53
3652 5701 2.366266 AGGTGTTGACATTGCAGCAAAT 59.634 40.909 12.97 3.11 30.76 2.32
3670 5719 5.241506 CCACAAACACACTGATAATCAAGGT 59.758 40.000 0.00 0.00 0.00 3.50
3693 5749 0.809241 CTCCTCGCATGAACAGAGCC 60.809 60.000 0.00 0.00 0.00 4.70
3725 5831 7.121315 GGACAATAGGGAAATTGATATACAGGC 59.879 40.741 3.73 0.00 38.84 4.85
3833 6058 5.522824 GCTACGACCAAAACTAAGAATAGGG 59.477 44.000 0.00 0.00 33.15 3.53
3848 6073 2.164422 CAGAGATGACAAGCTACGACCA 59.836 50.000 0.00 0.00 0.00 4.02
3849 6074 2.164624 ACAGAGATGACAAGCTACGACC 59.835 50.000 0.00 0.00 0.00 4.79
3851 6076 5.582550 CATAACAGAGATGACAAGCTACGA 58.417 41.667 0.00 0.00 0.00 3.43
3870 6098 0.575848 TGGGGAGGGATAGGGCATAA 59.424 55.000 0.00 0.00 0.00 1.90
3881 6109 4.526438 ACAAATCTAGAAATGGGGAGGG 57.474 45.455 11.51 0.00 0.00 4.30
3976 6507 9.959749 TCCGAGGCAAAAATGTATATATTTTTC 57.040 29.630 22.72 18.00 44.23 2.29
3982 6513 9.733556 AATATGTCCGAGGCAAAAATGTATATA 57.266 29.630 0.00 0.00 0.00 0.86
3983 6514 8.635765 AATATGTCCGAGGCAAAAATGTATAT 57.364 30.769 0.00 0.00 0.00 0.86
4002 6533 2.452505 CCAACCCGGGTTCAAATATGT 58.547 47.619 36.32 9.74 36.00 2.29
4011 6542 0.824595 GTTTACAGCCAACCCGGGTT 60.825 55.000 33.74 33.74 45.83 4.11
4014 6545 1.074248 AGGTTTACAGCCAACCCGG 59.926 57.895 0.00 0.00 44.38 5.73
4023 6554 4.286297 TCCACTGGATTCAGGTTTACAG 57.714 45.455 5.84 0.00 44.99 2.74
4049 6580 2.583441 CCGAGCCCTGTGAACCTGA 61.583 63.158 0.00 0.00 0.00 3.86
4388 6925 8.599624 AGGGTCATTCATCAAGTCATAATTTT 57.400 30.769 0.00 0.00 0.00 1.82
4424 7340 4.692625 CAGGGTTATGGATAATCGCTTCTG 59.307 45.833 0.00 0.00 0.00 3.02
4481 7397 2.104792 CTCTGAACTCTTTGGTCCACCA 59.895 50.000 0.00 0.00 45.94 4.17
4486 7402 5.555966 AGGAAATCTCTGAACTCTTTGGTC 58.444 41.667 0.00 0.00 0.00 4.02
4548 7464 7.081526 TCAGGATAACTTACTTCTACGTGAC 57.918 40.000 0.00 0.00 0.00 3.67
4560 7477 6.338146 CAATGTCGTTCCTCAGGATAACTTA 58.662 40.000 0.00 0.00 0.00 2.24
4581 7498 2.978278 TCTTTGGGCCAATTTGACCAAT 59.022 40.909 21.65 0.00 42.09 3.16
4583 7500 2.094100 TCTTTGGGCCAATTTGACCA 57.906 45.000 21.65 0.00 0.00 4.02
4585 7502 3.559655 GTGTTTCTTTGGGCCAATTTGAC 59.440 43.478 21.65 16.41 0.00 3.18
4608 7525 4.669728 GTCGTTCGGATTATCTGTAGTTCG 59.330 45.833 0.57 1.64 0.00 3.95
4614 7531 1.747355 ACGGTCGTTCGGATTATCTGT 59.253 47.619 0.57 0.00 0.00 3.41
4630 7547 1.152860 TGTTCATTGGGTGCACGGT 60.153 52.632 11.45 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.