Multiple sequence alignment - TraesCS7D01G218900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G218900 chr7D 100.000 4679 0 0 1 4679 179511217 179506539 0.000000e+00 8641.0
1 TraesCS7D01G218900 chr7D 88.003 1367 151 10 2251 3614 179536027 179534671 0.000000e+00 1604.0
2 TraesCS7D01G218900 chr7D 84.683 1371 189 15 2245 3604 179522044 179520684 0.000000e+00 1349.0
3 TraesCS7D01G218900 chr7D 86.291 1189 111 25 12 1165 179952829 179951658 0.000000e+00 1245.0
4 TraesCS7D01G218900 chr7D 85.519 877 106 11 1122 1989 179537083 179536219 0.000000e+00 896.0
5 TraesCS7D01G218900 chr7D 93.874 604 15 8 4095 4679 154195432 154196032 0.000000e+00 891.0
6 TraesCS7D01G218900 chr7D 83.557 894 119 20 1130 2009 179523138 179522259 0.000000e+00 811.0
7 TraesCS7D01G218900 chr7D 79.380 839 161 9 2277 3112 94114614 94113785 8.730000e-162 580.0
8 TraesCS7D01G218900 chr7B 96.559 2325 51 12 1 2312 145699835 145697527 0.000000e+00 3823.0
9 TraesCS7D01G218900 chr7B 96.624 1807 56 3 2295 4096 145697364 145695558 0.000000e+00 2994.0
10 TraesCS7D01G218900 chr7B 84.066 1638 183 39 2230 3832 145739665 145738071 0.000000e+00 1507.0
11 TraesCS7D01G218900 chr7B 84.621 1372 188 15 2245 3604 145710525 145709165 0.000000e+00 1343.0
12 TraesCS7D01G218900 chr7B 88.818 787 76 6 370 1156 145790772 145789998 0.000000e+00 955.0
13 TraesCS7D01G218900 chr7B 83.766 887 130 10 1130 2009 145711625 145710746 0.000000e+00 828.0
14 TraesCS7D01G218900 chr7B 87.321 418 42 6 1122 1530 145740771 145740356 7.090000e-128 468.0
15 TraesCS7D01G218900 chr7B 87.533 377 47 0 1608 1984 145740245 145739869 2.000000e-118 436.0
16 TraesCS7D01G218900 chr7B 86.905 84 7 2 4016 4095 149610339 149610256 1.790000e-14 91.6
17 TraesCS7D01G218900 chr7A 87.633 1787 178 28 2260 4017 183857582 183855810 0.000000e+00 2036.0
18 TraesCS7D01G218900 chr7A 88.093 1369 149 11 2251 3616 183950132 183948775 0.000000e+00 1613.0
19 TraesCS7D01G218900 chr7A 85.037 1223 164 13 2393 3604 183918191 183916977 0.000000e+00 1227.0
20 TraesCS7D01G218900 chr7A 84.352 965 99 25 1 941 183859805 183858869 0.000000e+00 898.0
21 TraesCS7D01G218900 chr7A 85.080 878 110 12 1121 1989 183858677 183857812 0.000000e+00 876.0
22 TraesCS7D01G218900 chr7A 84.783 874 111 14 1121 1989 183951216 183950360 0.000000e+00 857.0
23 TraesCS7D01G218900 chr7A 86.735 392 51 1 1618 2009 183920522 183920132 7.190000e-118 435.0
24 TraesCS7D01G218900 chr7A 82.372 312 49 5 1225 1530 183920896 183920585 2.780000e-67 267.0
25 TraesCS7D01G218900 chr7A 81.690 213 33 4 1160 1372 97406368 97406162 6.220000e-39 172.0
26 TraesCS7D01G218900 chr7A 87.500 64 7 1 4029 4092 626892591 626892653 6.490000e-09 73.1
27 TraesCS7D01G218900 chr3D 97.782 586 8 4 4096 4679 575602460 575603042 0.000000e+00 1005.0
28 TraesCS7D01G218900 chr3D 97.094 585 12 4 4097 4679 371443513 371444094 0.000000e+00 981.0
29 TraesCS7D01G218900 chr3D 83.529 85 11 3 4012 4096 515009829 515009748 5.020000e-10 76.8
30 TraesCS7D01G218900 chr1D 97.143 595 11 5 4088 4679 388987684 388987093 0.000000e+00 1000.0
31 TraesCS7D01G218900 chr1D 88.608 79 9 0 4015 4093 66562488 66562566 3.850000e-16 97.1
32 TraesCS7D01G218900 chr6D 97.265 585 11 4 4097 4679 173904043 173904624 0.000000e+00 987.0
33 TraesCS7D01G218900 chr6D 76.871 1323 249 37 2274 3548 445839235 445840548 0.000000e+00 695.0
34 TraesCS7D01G218900 chr6D 78.966 832 144 18 2277 3096 445956363 445957175 5.330000e-149 538.0
35 TraesCS7D01G218900 chr6D 77.778 405 72 11 3205 3591 445894861 445895265 2.820000e-57 233.0
36 TraesCS7D01G218900 chr6D 81.858 226 36 4 1151 1372 445800021 445799797 8.000000e-43 185.0
37 TraesCS7D01G218900 chr4D 96.494 599 13 7 4085 4679 469586956 469587550 0.000000e+00 983.0
38 TraesCS7D01G218900 chr2D 97.094 585 12 4 4097 4679 284572095 284571514 0.000000e+00 981.0
39 TraesCS7D01G218900 chr2D 97.094 585 12 4 4097 4679 385272095 385272676 0.000000e+00 981.0
40 TraesCS7D01G218900 chr2D 83.529 85 8 4 4016 4094 567483502 567483586 1.810000e-09 75.0
41 TraesCS7D01G218900 chr2B 96.581 585 17 3 4097 4679 580016632 580016049 0.000000e+00 966.0
42 TraesCS7D01G218900 chr2B 85.930 597 54 18 4094 4679 583166581 583167158 1.110000e-170 610.0
43 TraesCS7D01G218900 chr1A 96.252 587 19 3 4095 4679 511607740 511608325 0.000000e+00 959.0
44 TraesCS7D01G218900 chr6A 96.252 587 17 4 4095 4679 14482499 14481916 0.000000e+00 957.0
45 TraesCS7D01G218900 chr6A 80.070 858 154 12 2277 3124 592500748 592499898 5.140000e-174 621.0
46 TraesCS7D01G218900 chr6A 80.051 396 59 11 3179 3555 592579986 592580380 4.610000e-70 276.0
47 TraesCS7D01G218900 chr4B 95.756 589 21 4 4094 4679 387795187 387795774 0.000000e+00 946.0
48 TraesCS7D01G218900 chr5B 95.051 586 24 4 4096 4679 518301303 518300721 0.000000e+00 917.0
49 TraesCS7D01G218900 chr5B 83.721 86 10 4 4008 4092 440245106 440245188 1.400000e-10 78.7
50 TraesCS7D01G218900 chr5B 82.716 81 11 2 4016 4095 701152526 701152604 8.400000e-08 69.4
51 TraesCS7D01G218900 chr5D 95.385 390 12 5 4094 4480 47093211 47093597 2.390000e-172 616.0
52 TraesCS7D01G218900 chr6B 78.606 416 69 10 3205 3601 673698620 673699034 1.670000e-64 257.0
53 TraesCS7D01G218900 chr6B 77.412 456 80 12 3165 3601 672619462 672619011 2.800000e-62 250.0
54 TraesCS7D01G218900 chr6B 77.485 342 56 9 3251 3572 673362063 673361723 8.000000e-43 185.0
55 TraesCS7D01G218900 chr6B 81.416 226 37 4 1151 1372 673756548 673756772 3.720000e-41 180.0
56 TraesCS7D01G218900 chr6B 81.731 208 34 4 1612 1817 673366254 673366049 2.240000e-38 171.0
57 TraesCS7D01G218900 chr3B 87.342 79 8 1 4016 4094 744906483 744906559 6.450000e-14 89.8
58 TraesCS7D01G218900 chr3B 85.227 88 11 2 4005 4092 746342205 746342120 6.450000e-14 89.8
59 TraesCS7D01G218900 chr3B 87.342 79 8 1 4016 4094 746342120 746342196 6.450000e-14 89.8
60 TraesCS7D01G218900 chr1B 87.013 77 8 2 4016 4092 213904134 213904208 8.340000e-13 86.1
61 TraesCS7D01G218900 chr3A 83.951 81 11 2 4017 4097 649709120 649709042 5.020000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G218900 chr7D 179506539 179511217 4678 True 8641.000000 8641 100.000000 1 4679 1 chr7D.!!$R2 4678
1 TraesCS7D01G218900 chr7D 179534671 179537083 2412 True 1250.000000 1604 86.761000 1122 3614 2 chr7D.!!$R5 2492
2 TraesCS7D01G218900 chr7D 179951658 179952829 1171 True 1245.000000 1245 86.291000 12 1165 1 chr7D.!!$R3 1153
3 TraesCS7D01G218900 chr7D 179520684 179523138 2454 True 1080.000000 1349 84.120000 1130 3604 2 chr7D.!!$R4 2474
4 TraesCS7D01G218900 chr7D 154195432 154196032 600 False 891.000000 891 93.874000 4095 4679 1 chr7D.!!$F1 584
5 TraesCS7D01G218900 chr7D 94113785 94114614 829 True 580.000000 580 79.380000 2277 3112 1 chr7D.!!$R1 835
6 TraesCS7D01G218900 chr7B 145695558 145699835 4277 True 3408.500000 3823 96.591500 1 4096 2 chr7B.!!$R3 4095
7 TraesCS7D01G218900 chr7B 145709165 145711625 2460 True 1085.500000 1343 84.193500 1130 3604 2 chr7B.!!$R4 2474
8 TraesCS7D01G218900 chr7B 145789998 145790772 774 True 955.000000 955 88.818000 370 1156 1 chr7B.!!$R1 786
9 TraesCS7D01G218900 chr7B 145738071 145740771 2700 True 803.666667 1507 86.306667 1122 3832 3 chr7B.!!$R5 2710
10 TraesCS7D01G218900 chr7A 183855810 183859805 3995 True 1270.000000 2036 85.688333 1 4017 3 chr7A.!!$R2 4016
11 TraesCS7D01G218900 chr7A 183948775 183951216 2441 True 1235.000000 1613 86.438000 1121 3616 2 chr7A.!!$R4 2495
12 TraesCS7D01G218900 chr7A 183916977 183920896 3919 True 643.000000 1227 84.714667 1225 3604 3 chr7A.!!$R3 2379
13 TraesCS7D01G218900 chr3D 575602460 575603042 582 False 1005.000000 1005 97.782000 4096 4679 1 chr3D.!!$F2 583
14 TraesCS7D01G218900 chr3D 371443513 371444094 581 False 981.000000 981 97.094000 4097 4679 1 chr3D.!!$F1 582
15 TraesCS7D01G218900 chr1D 388987093 388987684 591 True 1000.000000 1000 97.143000 4088 4679 1 chr1D.!!$R1 591
16 TraesCS7D01G218900 chr6D 173904043 173904624 581 False 987.000000 987 97.265000 4097 4679 1 chr6D.!!$F1 582
17 TraesCS7D01G218900 chr6D 445839235 445840548 1313 False 695.000000 695 76.871000 2274 3548 1 chr6D.!!$F2 1274
18 TraesCS7D01G218900 chr6D 445956363 445957175 812 False 538.000000 538 78.966000 2277 3096 1 chr6D.!!$F4 819
19 TraesCS7D01G218900 chr4D 469586956 469587550 594 False 983.000000 983 96.494000 4085 4679 1 chr4D.!!$F1 594
20 TraesCS7D01G218900 chr2D 284571514 284572095 581 True 981.000000 981 97.094000 4097 4679 1 chr2D.!!$R1 582
21 TraesCS7D01G218900 chr2D 385272095 385272676 581 False 981.000000 981 97.094000 4097 4679 1 chr2D.!!$F1 582
22 TraesCS7D01G218900 chr2B 580016049 580016632 583 True 966.000000 966 96.581000 4097 4679 1 chr2B.!!$R1 582
23 TraesCS7D01G218900 chr2B 583166581 583167158 577 False 610.000000 610 85.930000 4094 4679 1 chr2B.!!$F1 585
24 TraesCS7D01G218900 chr1A 511607740 511608325 585 False 959.000000 959 96.252000 4095 4679 1 chr1A.!!$F1 584
25 TraesCS7D01G218900 chr6A 14481916 14482499 583 True 957.000000 957 96.252000 4095 4679 1 chr6A.!!$R1 584
26 TraesCS7D01G218900 chr6A 592499898 592500748 850 True 621.000000 621 80.070000 2277 3124 1 chr6A.!!$R2 847
27 TraesCS7D01G218900 chr4B 387795187 387795774 587 False 946.000000 946 95.756000 4094 4679 1 chr4B.!!$F1 585
28 TraesCS7D01G218900 chr5B 518300721 518301303 582 True 917.000000 917 95.051000 4096 4679 1 chr5B.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 330 0.266453 TCCGTCCATATTCCTGGGGA 59.734 55.000 0.00 0.00 36.89 4.81 F
559 607 1.220529 CATCGTATGCATTGACGGCT 58.779 50.000 19.08 7.05 39.53 5.52 F
647 705 1.451936 CCCATTCGACCTCCCCATC 59.548 63.158 0.00 0.00 0.00 3.51 F
2021 2228 1.538047 TTGAAAGGAGATGTGGCTGC 58.462 50.000 0.00 0.00 0.00 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1426 1.461127 GTGGCGTTGCAGTAGAAGAAG 59.539 52.381 0.00 0.0 0.0 2.85 R
2128 2368 1.514553 GTACGTACCTGCCCTGACC 59.485 63.158 15.00 0.0 0.0 4.02 R
2256 2497 4.451150 TGCGCTGCGTCCCTAAGG 62.451 66.667 24.04 0.0 0.0 2.69 R
3935 6019 1.222567 GAAAGGGGGAGGAATAGGCA 58.777 55.000 0.00 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 0.909610 AGGAACCGAGGAAGCATGGA 60.910 55.000 0.00 0.00 0.00 3.41
73 75 6.094186 ACCAGTTGTGAACTTCTCTTCTTTTC 59.906 38.462 0.00 0.00 40.46 2.29
106 108 2.123589 TCCAATGGAGGCCGAAGAATA 58.876 47.619 0.00 0.00 0.00 1.75
109 111 4.020218 TCCAATGGAGGCCGAAGAATATAG 60.020 45.833 0.00 0.00 0.00 1.31
152 158 3.567478 TACAGTGCGCAGGTGTCCG 62.567 63.158 24.62 2.78 0.00 4.79
183 191 3.060602 GCTATTCCACGATGTAGCTTCC 58.939 50.000 0.00 0.00 37.25 3.46
300 330 0.266453 TCCGTCCATATTCCTGGGGA 59.734 55.000 0.00 0.00 36.89 4.81
313 343 3.186283 TCCTGGGGAGCTAACATTGTTA 58.814 45.455 8.86 8.86 0.00 2.41
505 552 2.310233 CCTTCGTGGTGTGTCGCTG 61.310 63.158 0.00 0.00 0.00 5.18
559 607 1.220529 CATCGTATGCATTGACGGCT 58.779 50.000 19.08 7.05 39.53 5.52
647 705 1.451936 CCCATTCGACCTCCCCATC 59.548 63.158 0.00 0.00 0.00 3.51
728 787 7.868415 CCAGCAGTTCTCTACCTTAATACATAC 59.132 40.741 0.00 0.00 0.00 2.39
961 1022 9.859427 GATTCATGTTTTGTCTTAATTCCATCA 57.141 29.630 0.00 0.00 0.00 3.07
1059 1120 3.625853 AGATGAGATCGAAGACCTGTCA 58.374 45.455 0.00 0.00 42.51 3.58
1305 1426 2.755469 TACGGCCGGTACCTGGTC 60.755 66.667 31.76 17.37 0.00 4.02
1989 2196 3.824443 TGATATTCATGGCATTGCTCCAG 59.176 43.478 8.82 0.00 36.98 3.86
2019 2226 5.774690 TGTTTATTTGAAAGGAGATGTGGCT 59.225 36.000 0.00 0.00 0.00 4.75
2021 2228 1.538047 TTGAAAGGAGATGTGGCTGC 58.462 50.000 0.00 0.00 0.00 5.25
2076 2283 2.031012 TGCTTCAGGACCACGCTG 59.969 61.111 0.00 0.00 0.00 5.18
2128 2368 1.738099 CAAAGTCCGGCGGAGACTG 60.738 63.158 31.98 21.50 43.77 3.51
2219 2460 7.340232 TGCAAATCACTGCCTTCTATTATTTCT 59.660 33.333 0.00 0.00 41.90 2.52
2256 2497 8.885494 ATCTCTGTTTATCTCTCTGCAATTAC 57.115 34.615 0.00 0.00 0.00 1.89
2337 2758 1.819632 CATCACCTACCAAGCCGGC 60.820 63.158 21.89 21.89 39.03 6.13
2372 2793 1.448893 GCGTCTGGCCGGATAACAA 60.449 57.895 19.55 0.00 34.80 2.83
3650 5723 0.603707 AACAGTGTGGATCCTGCACG 60.604 55.000 24.17 21.40 41.94 5.34
3738 5814 5.294552 CAGTAGCAGTAAAGCCTACAATTCC 59.705 44.000 0.00 0.00 34.23 3.01
3776 5857 5.954296 ATGTCAAGACAGGTGATCTTTTG 57.046 39.130 8.99 0.00 45.48 2.44
3935 6019 2.093235 GGCTTGTCCAGTCTCTGCTATT 60.093 50.000 0.00 0.00 34.01 1.73
3936 6020 2.935201 GCTTGTCCAGTCTCTGCTATTG 59.065 50.000 0.00 0.00 0.00 1.90
4017 6102 8.957466 ACATTTTAAATCCCTCAAACTAGCTAC 58.043 33.333 0.00 0.00 0.00 3.58
4027 6112 3.940221 TCAAACTAGCTACTCTCTCCGAC 59.060 47.826 0.00 0.00 0.00 4.79
4052 6137 6.319152 CCCATATTAATTGTCGGTGGTTTACA 59.681 38.462 0.00 0.00 0.00 2.41
4088 6173 5.337250 CGACAATTAATATGGATCGGAGGGA 60.337 44.000 0.00 0.00 0.00 4.20
4104 6189 1.755380 AGGGAGTAGTATTGTCACGGC 59.245 52.381 0.00 0.00 0.00 5.68
4128 6216 2.046796 TGATTGCCGCGCAGGTTA 60.047 55.556 8.75 2.76 40.61 2.85
4242 6332 5.399113 AGGAGGAGAGGTTGTAGGATATTC 58.601 45.833 0.00 0.00 0.00 1.75
4315 6429 7.558444 ACAAGACCAGACTAAGACTCCTATTAG 59.442 40.741 0.00 0.00 35.54 1.73
4377 6492 6.027482 ACCTTTCCAACTAATACCCAGACTA 58.973 40.000 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 0.250684 TGGTGTCCGTGAACATGCAT 60.251 50.000 0.00 0.00 0.00 3.96
73 75 0.810648 CATTGGACGACAACCATGGG 59.189 55.000 18.09 0.85 42.94 4.00
152 158 0.464554 GTGGAATAGCCTGGCTGGAC 60.465 60.000 30.83 19.28 40.10 4.02
183 191 6.468956 GGTGTGCAATGTATATTTGAAAGACG 59.531 38.462 0.00 0.00 0.00 4.18
327 357 5.057843 ACTGTACGGGAACTAGGATATGA 57.942 43.478 6.65 0.00 0.00 2.15
505 552 7.201652 CGAAAATTCCTTCAAGATAGGGAAGAC 60.202 40.741 0.00 0.00 42.39 3.01
559 607 7.052248 TCGAGGTAGAACTACTTGATATGTCA 58.948 38.462 11.04 0.00 36.36 3.58
647 705 3.900116 CGCAAACTCATCGTTGTTAACAG 59.100 43.478 8.56 0.00 35.61 3.16
688 747 2.811101 CTGGTAGCTGGAGCCGAG 59.189 66.667 0.00 0.00 43.38 4.63
728 787 5.248087 CACTTCGTGCTGTATTTATTCGTG 58.752 41.667 0.00 0.00 0.00 4.35
913 974 6.159172 TCTCTCCCCAATATATAGCTCACT 57.841 41.667 0.00 0.00 0.00 3.41
961 1022 3.399305 AGGGAGTCAGGGTTCAATTTCTT 59.601 43.478 0.00 0.00 0.00 2.52
966 1027 1.912043 CTCAGGGAGTCAGGGTTCAAT 59.088 52.381 0.00 0.00 0.00 2.57
1059 1120 4.322198 CCATTTGCATTAGGCTGAAGTTGT 60.322 41.667 0.00 0.00 45.15 3.32
1305 1426 1.461127 GTGGCGTTGCAGTAGAAGAAG 59.539 52.381 0.00 0.00 0.00 2.85
1989 2196 6.399639 TCTCCTTTCAAATAAACAACACCC 57.600 37.500 0.00 0.00 0.00 4.61
2076 2283 4.439289 GCAATCTTAGCCTGGACATTTGTC 60.439 45.833 0.00 1.99 44.04 3.18
2128 2368 1.514553 GTACGTACCTGCCCTGACC 59.485 63.158 15.00 0.00 0.00 4.02
2219 2460 7.164122 AGATAAACAGAGATCAACTTCAAGCA 58.836 34.615 0.00 0.00 0.00 3.91
2256 2497 4.451150 TGCGCTGCGTCCCTAAGG 62.451 66.667 24.04 0.00 0.00 2.69
3387 5433 5.172460 TGATGATAACAACAATGGATGCG 57.828 39.130 0.00 0.00 0.00 4.73
3650 5723 4.840005 GTGCCGCTGGAGCTACCC 62.840 72.222 0.00 0.00 39.32 3.69
3738 5814 9.599866 TGTCTTGACATTTTGATAGGTGTATAG 57.400 33.333 0.00 0.00 0.00 1.31
3776 5857 8.540388 TCAGGATACAAGGCAAATAGATATACC 58.460 37.037 0.00 0.00 41.41 2.73
3935 6019 1.222567 GAAAGGGGGAGGAATAGGCA 58.777 55.000 0.00 0.00 0.00 4.75
3936 6020 1.524037 AGAAAGGGGGAGGAATAGGC 58.476 55.000 0.00 0.00 0.00 3.93
4017 6102 6.102897 ACAATTAATATGGGTCGGAGAGAG 57.897 41.667 0.00 0.00 36.95 3.20
4027 6112 5.845391 AAACCACCGACAATTAATATGGG 57.155 39.130 0.00 0.00 0.00 4.00
4052 6137 8.999431 CCATATTAATTGTCGCTGGTTTAGTAT 58.001 33.333 0.00 0.00 0.00 2.12
4064 6149 4.870426 CCCTCCGATCCATATTAATTGTCG 59.130 45.833 0.00 0.00 0.00 4.35
4088 6173 0.828677 GGGGCCGTGACAATACTACT 59.171 55.000 0.00 0.00 0.00 2.57
4128 6216 2.024655 TCCTCCTACCAACCACGACTAT 60.025 50.000 0.00 0.00 0.00 2.12
4242 6332 4.191544 TGGATCAATAAACGGAAGCAGAG 58.808 43.478 0.00 0.00 0.00 3.35
4315 6429 0.831711 ACCCTGCCAACACCCAATTC 60.832 55.000 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.