Multiple sequence alignment - TraesCS7D01G218400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G218400 chr7D 100.000 5576 0 0 1 5576 178992989 178987414 0.000000e+00 10298
1 TraesCS7D01G218400 chr7D 76.918 1460 306 27 2977 4422 178938981 178937539 0.000000e+00 800
2 TraesCS7D01G218400 chr7D 75.992 1562 275 54 682 2161 178941178 178939635 0.000000e+00 715
3 TraesCS7D01G218400 chr7D 82.003 639 105 9 1177 1813 179123521 179122891 8.220000e-148 534
4 TraesCS7D01G218400 chr7D 81.493 643 103 12 1174 1813 178861840 178861211 1.070000e-141 514
5 TraesCS7D01G218400 chr7B 94.621 5187 236 23 1 5162 145031592 145026424 0.000000e+00 7993
6 TraesCS7D01G218400 chr7B 77.129 1456 294 32 2977 4414 144811685 144810251 0.000000e+00 808
7 TraesCS7D01G218400 chr7B 76.338 1551 278 53 682 2161 144813871 144812339 0.000000e+00 749
8 TraesCS7D01G218400 chr7B 77.333 975 199 18 2977 3940 144734706 144733743 1.750000e-154 556
9 TraesCS7D01G218400 chr7B 77.306 965 193 21 2978 3929 145053308 145052357 3.800000e-151 545
10 TraesCS7D01G218400 chr7B 82.160 639 104 9 1177 1813 145055154 145054524 1.770000e-149 540
11 TraesCS7D01G218400 chr7B 76.970 330 73 2 1715 2044 144707278 144706952 9.540000e-43 185
12 TraesCS7D01G218400 chr7A 96.725 3542 98 5 1 3524 183645215 183641674 0.000000e+00 5882
13 TraesCS7D01G218400 chr7A 97.222 684 19 0 4119 4802 183641237 183640554 0.000000e+00 1158
14 TraesCS7D01G218400 chr7A 76.797 1461 306 29 2977 4422 183481538 183480096 0.000000e+00 789
15 TraesCS7D01G218400 chr7A 88.462 650 35 18 4788 5425 183621697 183621076 0.000000e+00 749
16 TraesCS7D01G218400 chr7A 96.854 445 14 0 3634 4078 183641677 183641233 0.000000e+00 745
17 TraesCS7D01G218400 chr7A 76.294 1468 298 42 2977 4422 183654099 183652660 0.000000e+00 737
18 TraesCS7D01G218400 chr7A 76.067 1546 274 58 691 2161 183483716 183482192 0.000000e+00 717
19 TraesCS7D01G218400 chr7A 82.942 639 99 9 1177 1813 183655920 183655290 8.110000e-158 568
20 TraesCS7D01G218400 chr7A 76.824 1083 196 34 746 1813 182857273 182856231 4.880000e-155 558
21 TraesCS7D01G218400 chr7A 76.737 950 202 17 2977 3915 183307001 183306060 3.850000e-141 512
22 TraesCS7D01G218400 chr7A 80.871 643 108 11 1174 1813 183308912 183308282 5.020000e-135 492
23 TraesCS7D01G218400 chr7A 77.879 330 70 2 1715 2044 182720937 182720611 9.470000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G218400 chr7D 178987414 178992989 5575 True 10298.0 10298 100.000000 1 5576 1 chr7D.!!$R2 5575
1 TraesCS7D01G218400 chr7D 178937539 178941178 3639 True 757.5 800 76.455000 682 4422 2 chr7D.!!$R4 3740
2 TraesCS7D01G218400 chr7D 179122891 179123521 630 True 534.0 534 82.003000 1177 1813 1 chr7D.!!$R3 636
3 TraesCS7D01G218400 chr7D 178861211 178861840 629 True 514.0 514 81.493000 1174 1813 1 chr7D.!!$R1 639
4 TraesCS7D01G218400 chr7B 145026424 145031592 5168 True 7993.0 7993 94.621000 1 5162 1 chr7B.!!$R3 5161
5 TraesCS7D01G218400 chr7B 144810251 144813871 3620 True 778.5 808 76.733500 682 4414 2 chr7B.!!$R4 3732
6 TraesCS7D01G218400 chr7B 144733743 144734706 963 True 556.0 556 77.333000 2977 3940 1 chr7B.!!$R2 963
7 TraesCS7D01G218400 chr7B 145052357 145055154 2797 True 542.5 545 79.733000 1177 3929 2 chr7B.!!$R5 2752
8 TraesCS7D01G218400 chr7A 183640554 183645215 4661 True 2595.0 5882 96.933667 1 4802 3 chr7A.!!$R6 4801
9 TraesCS7D01G218400 chr7A 183480096 183483716 3620 True 753.0 789 76.432000 691 4422 2 chr7A.!!$R5 3731
10 TraesCS7D01G218400 chr7A 183621076 183621697 621 True 749.0 749 88.462000 4788 5425 1 chr7A.!!$R3 637
11 TraesCS7D01G218400 chr7A 183652660 183655920 3260 True 652.5 737 79.618000 1177 4422 2 chr7A.!!$R7 3245
12 TraesCS7D01G218400 chr7A 182856231 182857273 1042 True 558.0 558 76.824000 746 1813 1 chr7A.!!$R2 1067
13 TraesCS7D01G218400 chr7A 183306060 183308912 2852 True 502.0 512 78.804000 1174 3915 2 chr7A.!!$R4 2741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 602 0.250234 TCTGGAAGCAATCGGACCTG 59.750 55.000 0.00 0.0 0.00 4.00 F
943 959 1.612676 TATCCAATGCTGCAGATGCC 58.387 50.000 20.43 0.0 41.18 4.40 F
2374 2640 1.042229 TGCAGACAGCCAGCAAATTT 58.958 45.000 0.00 0.0 44.83 1.82 F
3852 4202 1.336609 GGAAGCTGCAGGAAAGCAAAG 60.337 52.381 17.12 0.0 45.13 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 1703 1.065928 ACCGCGTCTGGATCGAATC 59.934 57.895 4.92 0.0 0.00 2.52 R
2459 2725 3.257127 GTCTATACACTGATCCTCTGGGC 59.743 52.174 0.00 0.0 0.00 5.36 R
3934 4284 1.499007 CAAGGGCCCCCATACTGTATT 59.501 52.381 21.43 0.0 38.92 1.89 R
5262 5637 0.112412 ACATTGGTGACTGGTTCCCC 59.888 55.000 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 3.660865 CAGTCAAGGTAGCCTTTAACGT 58.339 45.455 0.00 0.00 41.69 3.99
196 197 2.146342 TCGCCTTTTCTTCTTCAGCAG 58.854 47.619 0.00 0.00 0.00 4.24
349 352 3.242549 TGTCTGAGCAGCTAATCTGTG 57.757 47.619 0.00 0.00 44.66 3.66
392 395 0.397941 ACTTGCAACCTCAGCTAGCA 59.602 50.000 18.83 0.00 38.19 3.49
401 404 2.277969 CCTCAGCTAGCAACTGATGTG 58.722 52.381 18.83 3.60 42.99 3.21
445 448 6.740122 GCCAGGTATGATTCTTACCTTCTCTC 60.740 46.154 22.41 10.49 45.73 3.20
599 602 0.250234 TCTGGAAGCAATCGGACCTG 59.750 55.000 0.00 0.00 0.00 4.00
604 607 2.614481 GGAAGCAATCGGACCTGTGTAA 60.614 50.000 0.00 0.00 0.00 2.41
700 703 9.869844 GTTTATGTACATGAGCTAATGATTCAC 57.130 33.333 18.56 9.80 0.00 3.18
814 830 5.579384 TGTTTTCGTTTGGTGTATAGACG 57.421 39.130 0.00 0.00 35.24 4.18
873 889 4.022503 GCCTTTTCTTCTTCAGCACAATCT 60.023 41.667 0.00 0.00 0.00 2.40
943 959 1.612676 TATCCAATGCTGCAGATGCC 58.387 50.000 20.43 0.00 41.18 4.40
989 1005 2.157738 AGACTTGCAATCTTGGTCAGC 58.842 47.619 15.61 0.00 0.00 4.26
1186 1241 3.507162 TCCCTGTTGATTTTGAGCTCA 57.493 42.857 13.74 13.74 0.00 4.26
1290 1346 3.244770 GGGGATCTTGGACACTAAACACA 60.245 47.826 0.00 0.00 0.00 3.72
1587 1643 5.879777 TGTGTATGTTGTGATTCATACCCTG 59.120 40.000 11.15 0.00 43.02 4.45
1647 1703 3.632604 AGCTGCAAAGAATGATGGATGAG 59.367 43.478 1.02 0.00 0.00 2.90
2243 2368 4.142447 GCAAGATCATTCTCATGCAACTGT 60.142 41.667 0.00 0.00 36.27 3.55
2296 2421 2.027745 CCAGAAGAAGGCAGTGCTTCTA 60.028 50.000 22.06 0.00 44.67 2.10
2374 2640 1.042229 TGCAGACAGCCAGCAAATTT 58.958 45.000 0.00 0.00 44.83 1.82
2813 3106 2.040544 CCACCAACGATCACCCAGC 61.041 63.158 0.00 0.00 0.00 4.85
2959 3303 4.624452 GCAGCAAAAAGAATTCTGATGACC 59.376 41.667 9.17 0.00 31.28 4.02
3016 3360 6.375455 CACATACCTACTTCTTCTTGCCATTT 59.625 38.462 0.00 0.00 0.00 2.32
3702 4052 8.636843 GTGTTCTACTACTCAAATTCAGTTACG 58.363 37.037 0.00 0.00 0.00 3.18
3725 4075 5.971792 CGTTCGTGTCATCTGTAGTTATCAT 59.028 40.000 0.00 0.00 0.00 2.45
3852 4202 1.336609 GGAAGCTGCAGGAAAGCAAAG 60.337 52.381 17.12 0.00 45.13 2.77
3934 4284 6.493802 AGTCCTTGTACTCTCTTCAACACATA 59.506 38.462 0.00 0.00 0.00 2.29
4507 4857 4.471386 TGAGACTAAGGAAGAGAAATGGGG 59.529 45.833 0.00 0.00 0.00 4.96
4589 4939 9.090692 ACAACAAGTTTGAAGATTCAATTTCTG 57.909 29.630 8.72 7.08 45.65 3.02
4752 5105 7.129109 TGAAATTTGGACTCGAGTGATAAAC 57.871 36.000 25.58 7.00 0.00 2.01
4765 5118 6.476706 TCGAGTGATAAACTGCATATCTGTTG 59.523 38.462 7.21 0.50 40.07 3.33
4780 5133 7.509546 CATATCTGTTGGGTGTTCCTATACTT 58.490 38.462 0.00 0.00 36.20 2.24
5111 5478 4.216687 CGTAGGTATGTGGATTCCTCTCTC 59.783 50.000 3.95 0.00 31.97 3.20
5170 5537 9.290988 TCACCTTATAAGTTGAGCAATTTAACA 57.709 29.630 8.52 0.00 0.00 2.41
5184 5551 9.798994 GAGCAATTTAACATTTTCTCAGATGAT 57.201 29.630 0.00 0.00 0.00 2.45
5188 5555 9.778993 AATTTAACATTTTCTCAGATGATCACG 57.221 29.630 0.00 0.00 0.00 4.35
5199 5566 5.304778 TCAGATGATCACGTCCAAAAGAAA 58.695 37.500 0.00 0.00 32.93 2.52
5216 5583 6.410942 AAAGAAATTTGACTAGCCAGCTTT 57.589 33.333 0.00 0.00 0.00 3.51
5220 5587 5.635417 AATTTGACTAGCCAGCTTTTCTC 57.365 39.130 0.00 0.00 0.00 2.87
5221 5588 3.769739 TTGACTAGCCAGCTTTTCTCA 57.230 42.857 0.00 0.00 0.00 3.27
5222 5589 3.325293 TGACTAGCCAGCTTTTCTCAG 57.675 47.619 0.00 0.00 0.00 3.35
5244 5619 7.443218 CAGAGTATTTCTGTAATGTCAGTCG 57.557 40.000 0.00 0.00 46.77 4.18
5258 5633 6.710597 ATGTCAGTCGGTATTTAGAGCTTA 57.289 37.500 0.00 0.00 0.00 3.09
5259 5634 5.888105 TGTCAGTCGGTATTTAGAGCTTAC 58.112 41.667 0.00 0.00 0.00 2.34
5260 5635 5.416639 TGTCAGTCGGTATTTAGAGCTTACA 59.583 40.000 0.00 0.00 0.00 2.41
5261 5636 5.742926 GTCAGTCGGTATTTAGAGCTTACAC 59.257 44.000 0.00 0.00 0.00 2.90
5262 5637 4.733887 CAGTCGGTATTTAGAGCTTACACG 59.266 45.833 0.00 0.00 0.00 4.49
5265 5640 3.725490 GGTATTTAGAGCTTACACGGGG 58.275 50.000 0.00 0.00 0.00 5.73
5266 5641 3.385755 GGTATTTAGAGCTTACACGGGGA 59.614 47.826 0.00 0.00 0.00 4.81
5267 5642 4.141869 GGTATTTAGAGCTTACACGGGGAA 60.142 45.833 0.00 0.00 0.00 3.97
5268 5643 3.323751 TTTAGAGCTTACACGGGGAAC 57.676 47.619 0.00 0.00 0.00 3.62
5283 5658 1.981256 GGAACCAGTCACCAATGTGT 58.019 50.000 0.00 0.00 43.26 3.72
5284 5659 3.134574 GGAACCAGTCACCAATGTGTA 57.865 47.619 0.00 0.00 43.26 2.90
5285 5660 3.686016 GGAACCAGTCACCAATGTGTAT 58.314 45.455 0.00 0.00 43.26 2.29
5286 5661 4.079253 GGAACCAGTCACCAATGTGTATT 58.921 43.478 0.00 0.00 43.26 1.89
5287 5662 4.522789 GGAACCAGTCACCAATGTGTATTT 59.477 41.667 0.00 0.00 43.26 1.40
5288 5663 5.010617 GGAACCAGTCACCAATGTGTATTTT 59.989 40.000 0.00 0.00 43.26 1.82
5297 5672 4.898861 ACCAATGTGTATTTTGAACAGGGT 59.101 37.500 0.00 0.00 33.21 4.34
5363 5738 9.609346 TCCCTTCTATTACAGTTATTGTTAAGC 57.391 33.333 0.00 0.00 41.29 3.09
5364 5739 9.614792 CCCTTCTATTACAGTTATTGTTAAGCT 57.385 33.333 0.00 0.00 41.29 3.74
5380 5755 5.825679 TGTTAAGCTAAGCTCTGTTTTCCAA 59.174 36.000 0.00 0.00 38.25 3.53
5385 5760 6.241645 AGCTAAGCTCTGTTTTCCAATAAGT 58.758 36.000 0.00 0.00 30.62 2.24
5405 5780 3.627577 AGTAAATAGGATGTGCCGCAAAG 59.372 43.478 0.00 0.00 43.43 2.77
5414 5792 1.474478 TGTGCCGCAAAGAAAAACTGA 59.526 42.857 0.00 0.00 0.00 3.41
5440 5818 3.349488 GTTTGAGTAAACGCAGGCTTT 57.651 42.857 0.00 0.00 37.08 3.51
5441 5819 4.477302 GTTTGAGTAAACGCAGGCTTTA 57.523 40.909 0.00 0.00 37.08 1.85
5442 5820 4.464112 GTTTGAGTAAACGCAGGCTTTAG 58.536 43.478 0.00 0.00 37.08 1.85
5443 5821 3.396260 TGAGTAAACGCAGGCTTTAGT 57.604 42.857 0.00 0.00 0.00 2.24
5444 5822 3.064207 TGAGTAAACGCAGGCTTTAGTG 58.936 45.455 0.00 0.00 0.00 2.74
5445 5823 3.064931 GAGTAAACGCAGGCTTTAGTGT 58.935 45.455 0.00 0.00 0.00 3.55
5446 5824 3.064931 AGTAAACGCAGGCTTTAGTGTC 58.935 45.455 0.00 0.00 0.00 3.67
5447 5825 2.256117 AAACGCAGGCTTTAGTGTCT 57.744 45.000 0.00 0.00 0.00 3.41
5448 5826 1.512926 AACGCAGGCTTTAGTGTCTG 58.487 50.000 0.00 0.00 0.00 3.51
5449 5827 0.393077 ACGCAGGCTTTAGTGTCTGT 59.607 50.000 0.00 0.00 0.00 3.41
5450 5828 1.202651 ACGCAGGCTTTAGTGTCTGTT 60.203 47.619 0.00 0.00 0.00 3.16
5451 5829 1.461127 CGCAGGCTTTAGTGTCTGTTC 59.539 52.381 0.00 0.00 0.00 3.18
5452 5830 2.494059 GCAGGCTTTAGTGTCTGTTCA 58.506 47.619 0.00 0.00 0.00 3.18
5453 5831 2.481952 GCAGGCTTTAGTGTCTGTTCAG 59.518 50.000 0.00 0.00 0.00 3.02
5454 5832 2.481952 CAGGCTTTAGTGTCTGTTCAGC 59.518 50.000 0.00 0.00 0.00 4.26
5455 5833 1.807142 GGCTTTAGTGTCTGTTCAGCC 59.193 52.381 0.00 0.00 0.00 4.85
5456 5834 2.494059 GCTTTAGTGTCTGTTCAGCCA 58.506 47.619 0.00 0.00 0.00 4.75
5457 5835 2.481952 GCTTTAGTGTCTGTTCAGCCAG 59.518 50.000 0.00 0.00 0.00 4.85
5458 5836 3.733337 CTTTAGTGTCTGTTCAGCCAGT 58.267 45.455 0.00 0.00 34.02 4.00
5459 5837 3.838244 TTAGTGTCTGTTCAGCCAGTT 57.162 42.857 0.00 0.00 34.02 3.16
5460 5838 2.717639 AGTGTCTGTTCAGCCAGTTT 57.282 45.000 0.00 0.00 34.02 2.66
5461 5839 2.292267 AGTGTCTGTTCAGCCAGTTTG 58.708 47.619 0.00 0.00 34.02 2.93
5462 5840 1.334869 GTGTCTGTTCAGCCAGTTTGG 59.665 52.381 0.00 0.00 41.55 3.28
5463 5841 1.211703 TGTCTGTTCAGCCAGTTTGGA 59.788 47.619 0.00 0.00 40.96 3.53
5464 5842 2.158623 TGTCTGTTCAGCCAGTTTGGAT 60.159 45.455 0.00 0.00 40.96 3.41
5465 5843 2.887152 GTCTGTTCAGCCAGTTTGGATT 59.113 45.455 0.00 0.00 40.96 3.01
5466 5844 3.319122 GTCTGTTCAGCCAGTTTGGATTT 59.681 43.478 0.00 0.00 40.96 2.17
5467 5845 3.318839 TCTGTTCAGCCAGTTTGGATTTG 59.681 43.478 0.00 0.00 40.96 2.32
5468 5846 3.295093 TGTTCAGCCAGTTTGGATTTGA 58.705 40.909 0.00 0.00 40.96 2.69
5469 5847 3.703556 TGTTCAGCCAGTTTGGATTTGAA 59.296 39.130 0.00 3.23 40.96 2.69
5470 5848 4.161189 TGTTCAGCCAGTTTGGATTTGAAA 59.839 37.500 0.00 0.00 40.96 2.69
5471 5849 5.163322 TGTTCAGCCAGTTTGGATTTGAAAT 60.163 36.000 0.00 0.00 40.96 2.17
5472 5850 4.885413 TCAGCCAGTTTGGATTTGAAATG 58.115 39.130 0.00 0.00 40.96 2.32
5473 5851 4.344679 TCAGCCAGTTTGGATTTGAAATGT 59.655 37.500 0.00 0.00 40.96 2.71
5474 5852 5.538053 TCAGCCAGTTTGGATTTGAAATGTA 59.462 36.000 0.00 0.00 40.96 2.29
5475 5853 5.865552 CAGCCAGTTTGGATTTGAAATGTAG 59.134 40.000 0.00 0.00 40.96 2.74
5476 5854 4.627035 GCCAGTTTGGATTTGAAATGTAGC 59.373 41.667 0.00 0.00 40.96 3.58
5477 5855 5.567423 GCCAGTTTGGATTTGAAATGTAGCT 60.567 40.000 0.00 0.00 40.96 3.32
5478 5856 6.458210 CCAGTTTGGATTTGAAATGTAGCTT 58.542 36.000 0.00 0.00 40.96 3.74
5479 5857 6.930722 CCAGTTTGGATTTGAAATGTAGCTTT 59.069 34.615 0.00 0.00 40.96 3.51
5480 5858 7.442062 CCAGTTTGGATTTGAAATGTAGCTTTT 59.558 33.333 0.00 0.00 40.96 2.27
5481 5859 8.277713 CAGTTTGGATTTGAAATGTAGCTTTTG 58.722 33.333 0.00 0.00 0.00 2.44
5495 5873 3.629438 GCTTTTGCATGTGCCATTTTT 57.371 38.095 2.07 0.00 46.58 1.94
5514 5892 1.610363 TTTTTGCGAGGTATGTGCCA 58.390 45.000 0.00 0.00 0.00 4.92
5515 5893 1.832883 TTTTGCGAGGTATGTGCCAT 58.167 45.000 0.00 0.00 0.00 4.40
5516 5894 1.832883 TTTGCGAGGTATGTGCCATT 58.167 45.000 0.00 0.00 0.00 3.16
5517 5895 1.832883 TTGCGAGGTATGTGCCATTT 58.167 45.000 0.00 0.00 0.00 2.32
5518 5896 1.378531 TGCGAGGTATGTGCCATTTC 58.621 50.000 0.00 0.00 0.00 2.17
5519 5897 1.065491 TGCGAGGTATGTGCCATTTCT 60.065 47.619 0.00 0.00 0.00 2.52
5520 5898 2.017049 GCGAGGTATGTGCCATTTCTT 58.983 47.619 0.00 0.00 0.00 2.52
5521 5899 2.423538 GCGAGGTATGTGCCATTTCTTT 59.576 45.455 0.00 0.00 0.00 2.52
5522 5900 3.487544 GCGAGGTATGTGCCATTTCTTTC 60.488 47.826 0.00 0.00 0.00 2.62
5523 5901 3.242413 CGAGGTATGTGCCATTTCTTTCG 60.242 47.826 0.00 0.00 0.00 3.46
5524 5902 3.938963 GAGGTATGTGCCATTTCTTTCGA 59.061 43.478 0.00 0.00 0.00 3.71
5525 5903 4.526970 AGGTATGTGCCATTTCTTTCGAT 58.473 39.130 0.00 0.00 0.00 3.59
5526 5904 4.949856 AGGTATGTGCCATTTCTTTCGATT 59.050 37.500 0.00 0.00 0.00 3.34
5527 5905 5.418840 AGGTATGTGCCATTTCTTTCGATTT 59.581 36.000 0.00 0.00 0.00 2.17
5528 5906 5.516339 GGTATGTGCCATTTCTTTCGATTTG 59.484 40.000 0.00 0.00 0.00 2.32
5529 5907 4.844998 TGTGCCATTTCTTTCGATTTGA 57.155 36.364 0.00 0.00 0.00 2.69
5530 5908 5.193663 TGTGCCATTTCTTTCGATTTGAA 57.806 34.783 0.00 0.00 33.85 2.69
5531 5909 5.595885 TGTGCCATTTCTTTCGATTTGAAA 58.404 33.333 9.36 9.36 44.19 2.69
5532 5910 5.461737 TGTGCCATTTCTTTCGATTTGAAAC 59.538 36.000 9.20 1.11 41.59 2.78
5533 5911 5.461737 GTGCCATTTCTTTCGATTTGAAACA 59.538 36.000 9.20 3.16 41.59 2.83
5534 5912 6.019156 GTGCCATTTCTTTCGATTTGAAACAA 60.019 34.615 9.20 0.00 41.59 2.83
5535 5913 6.536582 TGCCATTTCTTTCGATTTGAAACAAA 59.463 30.769 9.20 3.27 41.59 2.83
5536 5914 7.065085 TGCCATTTCTTTCGATTTGAAACAAAA 59.935 29.630 9.20 4.98 41.59 2.44
5537 5915 8.069574 GCCATTTCTTTCGATTTGAAACAAAAT 58.930 29.630 9.20 6.56 41.59 1.82
5538 5916 9.934190 CCATTTCTTTCGATTTGAAACAAAATT 57.066 25.926 9.20 0.00 41.59 1.82
5543 5921 9.311916 TCTTTCGATTTGAAACAAAATTCATGT 57.688 25.926 0.00 0.00 41.59 3.21
5544 5922 9.919348 CTTTCGATTTGAAACAAAATTCATGTT 57.081 25.926 4.26 4.26 41.59 2.71
5545 5923 9.699985 TTTCGATTTGAAACAAAATTCATGTTG 57.300 25.926 9.56 0.00 41.59 3.33
5546 5924 7.343691 TCGATTTGAAACAAAATTCATGTTGC 58.656 30.769 9.56 8.61 39.98 4.17
5547 5925 7.010830 TCGATTTGAAACAAAATTCATGTTGCA 59.989 29.630 11.76 11.76 43.05 4.08
5548 5926 7.799447 CGATTTGAAACAAAATTCATGTTGCAT 59.201 29.630 15.03 5.24 43.90 3.96
5549 5927 9.453325 GATTTGAAACAAAATTCATGTTGCATT 57.547 25.926 15.03 8.63 43.90 3.56
5550 5928 9.804758 ATTTGAAACAAAATTCATGTTGCATTT 57.195 22.222 15.03 6.54 43.90 2.32
5551 5929 8.616377 TTGAAACAAAATTCATGTTGCATTTG 57.384 26.923 15.03 4.12 43.90 2.32
5552 5930 6.691818 TGAAACAAAATTCATGTTGCATTTGC 59.308 30.769 11.76 0.00 40.56 3.68
5553 5931 5.110940 ACAAAATTCATGTTGCATTTGCC 57.889 34.783 5.32 0.00 41.18 4.52
5554 5932 4.152526 CAAAATTCATGTTGCATTTGCCG 58.847 39.130 0.00 0.00 41.18 5.69
5555 5933 2.747396 ATTCATGTTGCATTTGCCGT 57.253 40.000 0.00 0.00 41.18 5.68
5556 5934 1.780806 TTCATGTTGCATTTGCCGTG 58.219 45.000 0.00 0.00 41.18 4.94
5557 5935 0.672889 TCATGTTGCATTTGCCGTGT 59.327 45.000 0.00 0.00 41.18 4.49
5558 5936 1.882623 TCATGTTGCATTTGCCGTGTA 59.117 42.857 0.00 0.00 41.18 2.90
5559 5937 2.294512 TCATGTTGCATTTGCCGTGTAA 59.705 40.909 0.00 0.00 41.18 2.41
5560 5938 2.871182 TGTTGCATTTGCCGTGTAAA 57.129 40.000 0.00 0.00 41.18 2.01
5561 5939 3.165058 TGTTGCATTTGCCGTGTAAAA 57.835 38.095 0.00 0.00 41.18 1.52
5562 5940 3.521560 TGTTGCATTTGCCGTGTAAAAA 58.478 36.364 0.00 0.00 41.18 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 5.659440 AGGAAAACAACAAAAAGAGAGCA 57.341 34.783 0.00 0.00 0.00 4.26
349 352 1.432270 GCTTGTACCCAGAGCGATGC 61.432 60.000 0.00 0.00 0.00 3.91
445 448 1.880027 GTCTAAACACCAAGCACAGGG 59.120 52.381 0.00 0.00 0.00 4.45
599 602 4.485163 CCACCAAAATAAGCAGCTTACAC 58.515 43.478 17.39 0.00 0.00 2.90
604 607 2.309136 ACCCACCAAAATAAGCAGCT 57.691 45.000 0.00 0.00 0.00 4.24
700 703 8.879342 TTATTTTTCAAACAGTAACCACCATG 57.121 30.769 0.00 0.00 0.00 3.66
814 830 2.156343 AGGAAGAGCGACTTTGTGAC 57.844 50.000 0.00 0.00 39.13 3.67
989 1005 3.495193 CTGTTTTCCATGTGATTGCTCG 58.505 45.455 0.00 0.00 0.00 5.03
1186 1241 1.557099 TACTTCCGCAGTCTCCACAT 58.443 50.000 0.00 0.00 36.88 3.21
1290 1346 0.467474 CACCAGCATCATGGCCATCT 60.467 55.000 17.61 7.11 44.80 2.90
1419 1475 2.661675 CCATATATTCCGCTTCGTCACG 59.338 50.000 0.00 0.00 0.00 4.35
1587 1643 7.712204 TTTTGGAATAACCTTTCTGGATACC 57.288 36.000 0.00 0.00 39.71 2.73
1598 1654 9.312904 TCTTTCTCAATGATTTTGGAATAACCT 57.687 29.630 0.00 0.00 39.86 3.50
1647 1703 1.065928 ACCGCGTCTGGATCGAATC 59.934 57.895 4.92 0.00 0.00 2.52
2243 2368 3.260632 TGCAAGGTCTGTAGTATGCTGAA 59.739 43.478 0.00 0.00 34.97 3.02
2296 2421 6.217294 TGTTTTGAACTCGGTTTTCTGTTTT 58.783 32.000 0.00 0.00 0.00 2.43
2374 2640 3.434167 GGCTCAGCCTCCTCATTATTTGA 60.434 47.826 9.09 0.00 46.69 2.69
2459 2725 3.257127 GTCTATACACTGATCCTCTGGGC 59.743 52.174 0.00 0.00 0.00 5.36
2959 3303 0.317479 AGAGGTTCCGAAGTTGGTCG 59.683 55.000 0.00 0.00 40.77 4.79
3016 3360 5.164620 TGATATGTCAGAGAAACTGCCAA 57.835 39.130 0.00 0.00 45.38 4.52
3702 4052 6.972901 TCATGATAACTACAGATGACACGAAC 59.027 38.462 0.00 0.00 0.00 3.95
3852 4202 7.434897 GCGATGATGATGAGATACTTAGATTCC 59.565 40.741 0.00 0.00 0.00 3.01
3934 4284 1.499007 CAAGGGCCCCCATACTGTATT 59.501 52.381 21.43 0.00 38.92 1.89
4379 4729 2.859165 AGTCCTGAATTTTCGGCAGA 57.141 45.000 0.00 0.00 32.15 4.26
4507 4857 0.106967 GGATGTCCTTTGAGGGAGCC 60.107 60.000 0.00 0.00 35.59 4.70
4589 4939 4.287766 ACAGATTCTTAACTGGTCCCAC 57.712 45.455 0.00 0.00 38.30 4.61
4752 5105 2.684881 GGAACACCCAACAGATATGCAG 59.315 50.000 0.00 0.00 34.14 4.41
4765 5118 2.238898 AGTGCCAAGTATAGGAACACCC 59.761 50.000 0.00 0.00 37.13 4.61
4780 5133 2.354303 CCGTAGTTCCATTACAGTGCCA 60.354 50.000 0.00 0.00 0.00 4.92
4909 5263 4.853924 AAAGTAGGCAAAAGTGATGGTG 57.146 40.909 0.00 0.00 0.00 4.17
4980 5334 2.944129 TGAGAAGGGGACAAAAAGTGG 58.056 47.619 0.00 0.00 0.00 4.00
5067 5421 8.276325 CCTACGATAATTTCTACTTGCATTCAC 58.724 37.037 0.00 0.00 0.00 3.18
5089 5456 5.390387 AGAGAGAGGAATCCACATACCTAC 58.610 45.833 0.61 0.00 32.53 3.18
5111 5478 5.221521 TGCATAAGTATAGACCAAGCCAGAG 60.222 44.000 0.00 0.00 0.00 3.35
5170 5537 5.089970 TGGACGTGATCATCTGAGAAAAT 57.910 39.130 0.00 0.00 0.00 1.82
5184 5551 5.828299 AGTCAAATTTCTTTTGGACGTGA 57.172 34.783 0.00 0.00 44.07 4.35
5188 5555 6.084326 TGGCTAGTCAAATTTCTTTTGGAC 57.916 37.500 0.00 0.00 44.07 4.02
5199 5566 4.655963 TGAGAAAAGCTGGCTAGTCAAAT 58.344 39.130 0.00 0.00 0.00 2.32
5221 5588 6.153000 ACCGACTGACATTACAGAAATACTCT 59.847 38.462 0.00 0.00 40.63 3.24
5222 5589 6.331061 ACCGACTGACATTACAGAAATACTC 58.669 40.000 0.00 0.00 40.63 2.59
5234 5609 5.599999 AGCTCTAAATACCGACTGACATT 57.400 39.130 0.00 0.00 0.00 2.71
5244 5619 3.385755 TCCCCGTGTAAGCTCTAAATACC 59.614 47.826 0.00 0.00 0.00 2.73
5251 5626 0.834687 TGGTTCCCCGTGTAAGCTCT 60.835 55.000 0.00 0.00 0.00 4.09
5258 5633 2.814835 GGTGACTGGTTCCCCGTGT 61.815 63.158 0.00 0.00 0.00 4.49
5259 5634 2.032071 GGTGACTGGTTCCCCGTG 59.968 66.667 0.00 0.00 0.00 4.94
5260 5635 1.423794 ATTGGTGACTGGTTCCCCGT 61.424 55.000 0.00 0.00 0.00 5.28
5261 5636 0.960364 CATTGGTGACTGGTTCCCCG 60.960 60.000 0.00 0.00 0.00 5.73
5262 5637 0.112412 ACATTGGTGACTGGTTCCCC 59.888 55.000 0.00 0.00 0.00 4.81
5274 5649 4.898861 ACCCTGTTCAAAATACACATTGGT 59.101 37.500 0.00 0.00 0.00 3.67
5275 5650 5.229423 CACCCTGTTCAAAATACACATTGG 58.771 41.667 0.00 0.00 0.00 3.16
5276 5651 5.229423 CCACCCTGTTCAAAATACACATTG 58.771 41.667 0.00 0.00 0.00 2.82
5277 5652 4.262420 GCCACCCTGTTCAAAATACACATT 60.262 41.667 0.00 0.00 0.00 2.71
5278 5653 3.258123 GCCACCCTGTTCAAAATACACAT 59.742 43.478 0.00 0.00 0.00 3.21
5279 5654 2.625790 GCCACCCTGTTCAAAATACACA 59.374 45.455 0.00 0.00 0.00 3.72
5280 5655 2.625790 TGCCACCCTGTTCAAAATACAC 59.374 45.455 0.00 0.00 0.00 2.90
5281 5656 2.950781 TGCCACCCTGTTCAAAATACA 58.049 42.857 0.00 0.00 0.00 2.29
5282 5657 3.509575 TGATGCCACCCTGTTCAAAATAC 59.490 43.478 0.00 0.00 0.00 1.89
5283 5658 3.509575 GTGATGCCACCCTGTTCAAAATA 59.490 43.478 0.00 0.00 37.33 1.40
5284 5659 2.299867 GTGATGCCACCCTGTTCAAAAT 59.700 45.455 0.00 0.00 37.33 1.82
5285 5660 1.686052 GTGATGCCACCCTGTTCAAAA 59.314 47.619 0.00 0.00 37.33 2.44
5286 5661 1.327303 GTGATGCCACCCTGTTCAAA 58.673 50.000 0.00 0.00 37.33 2.69
5287 5662 3.034924 GTGATGCCACCCTGTTCAA 57.965 52.632 0.00 0.00 37.33 2.69
5288 5663 4.819783 GTGATGCCACCCTGTTCA 57.180 55.556 0.00 0.00 37.33 3.18
5297 5672 1.303561 GCAGAACCTGGTGATGCCA 60.304 57.895 20.32 0.00 46.95 4.92
5307 5682 8.985315 TGATCTTATCATAAATTGCAGAACCT 57.015 30.769 0.00 0.00 33.59 3.50
5362 5737 6.502136 ACTTATTGGAAAACAGAGCTTAGC 57.498 37.500 0.00 0.00 0.00 3.09
5366 5741 9.178758 CCTATTTACTTATTGGAAAACAGAGCT 57.821 33.333 0.00 0.00 0.00 4.09
5367 5742 9.174166 TCCTATTTACTTATTGGAAAACAGAGC 57.826 33.333 0.00 0.00 0.00 4.09
5380 5755 4.968259 TGCGGCACATCCTATTTACTTAT 58.032 39.130 0.00 0.00 0.00 1.73
5385 5760 3.879998 TCTTTGCGGCACATCCTATTTA 58.120 40.909 0.05 0.00 0.00 1.40
5389 5764 2.192664 TTTCTTTGCGGCACATCCTA 57.807 45.000 0.05 0.00 0.00 2.94
5390 5765 1.327303 TTTTCTTTGCGGCACATCCT 58.673 45.000 0.05 0.00 0.00 3.24
5396 5771 2.949451 TTCAGTTTTTCTTTGCGGCA 57.051 40.000 0.00 0.00 0.00 5.69
5414 5792 4.506288 GCCTGCGTTTACTCAAACAAAATT 59.494 37.500 1.65 0.00 43.58 1.82
5425 5803 3.064931 GACACTAAAGCCTGCGTTTACT 58.935 45.455 0.00 0.00 0.00 2.24
5426 5804 3.064931 AGACACTAAAGCCTGCGTTTAC 58.935 45.455 0.00 0.00 0.00 2.01
5427 5805 3.064207 CAGACACTAAAGCCTGCGTTTA 58.936 45.455 0.00 0.00 0.00 2.01
5428 5806 1.873591 CAGACACTAAAGCCTGCGTTT 59.126 47.619 0.00 0.00 0.00 3.60
5429 5807 1.202651 ACAGACACTAAAGCCTGCGTT 60.203 47.619 0.00 0.00 0.00 4.84
5430 5808 0.393077 ACAGACACTAAAGCCTGCGT 59.607 50.000 0.00 0.00 0.00 5.24
5431 5809 1.461127 GAACAGACACTAAAGCCTGCG 59.539 52.381 0.00 0.00 0.00 5.18
5432 5810 2.481952 CTGAACAGACACTAAAGCCTGC 59.518 50.000 0.00 0.00 0.00 4.85
5433 5811 2.481952 GCTGAACAGACACTAAAGCCTG 59.518 50.000 5.97 0.00 0.00 4.85
5434 5812 2.551071 GGCTGAACAGACACTAAAGCCT 60.551 50.000 5.97 0.00 44.26 4.58
5435 5813 1.807142 GGCTGAACAGACACTAAAGCC 59.193 52.381 5.97 0.00 41.70 4.35
5436 5814 2.481952 CTGGCTGAACAGACACTAAAGC 59.518 50.000 6.23 0.00 42.59 3.51
5437 5815 3.733337 ACTGGCTGAACAGACACTAAAG 58.267 45.455 6.23 0.00 42.59 1.85
5438 5816 3.838244 ACTGGCTGAACAGACACTAAA 57.162 42.857 6.23 0.00 42.59 1.85
5439 5817 3.838244 AACTGGCTGAACAGACACTAA 57.162 42.857 6.23 0.00 42.59 2.24
5440 5818 3.466836 CAAACTGGCTGAACAGACACTA 58.533 45.455 6.23 0.00 42.59 2.74
5441 5819 2.292267 CAAACTGGCTGAACAGACACT 58.708 47.619 6.23 0.00 42.59 3.55
5442 5820 1.334869 CCAAACTGGCTGAACAGACAC 59.665 52.381 6.23 0.00 42.59 3.67
5443 5821 1.211703 TCCAAACTGGCTGAACAGACA 59.788 47.619 10.05 10.05 45.91 3.41
5444 5822 1.967319 TCCAAACTGGCTGAACAGAC 58.033 50.000 5.97 3.11 40.97 3.51
5445 5823 2.957402 ATCCAAACTGGCTGAACAGA 57.043 45.000 5.97 0.00 40.97 3.41
5446 5824 3.318839 TCAAATCCAAACTGGCTGAACAG 59.681 43.478 0.00 0.00 44.03 3.16
5447 5825 3.295093 TCAAATCCAAACTGGCTGAACA 58.705 40.909 0.00 0.00 37.47 3.18
5448 5826 4.320608 TTCAAATCCAAACTGGCTGAAC 57.679 40.909 0.00 0.00 37.47 3.18
5449 5827 5.163322 ACATTTCAAATCCAAACTGGCTGAA 60.163 36.000 0.00 0.00 37.47 3.02
5450 5828 4.344679 ACATTTCAAATCCAAACTGGCTGA 59.655 37.500 0.00 0.00 37.47 4.26
5451 5829 4.634199 ACATTTCAAATCCAAACTGGCTG 58.366 39.130 0.00 0.00 37.47 4.85
5452 5830 4.961438 ACATTTCAAATCCAAACTGGCT 57.039 36.364 0.00 0.00 37.47 4.75
5453 5831 4.627035 GCTACATTTCAAATCCAAACTGGC 59.373 41.667 0.00 0.00 37.47 4.85
5454 5832 6.029346 AGCTACATTTCAAATCCAAACTGG 57.971 37.500 0.00 0.00 39.43 4.00
5455 5833 7.951530 AAAGCTACATTTCAAATCCAAACTG 57.048 32.000 0.00 0.00 0.00 3.16
5456 5834 7.041848 GCAAAAGCTACATTTCAAATCCAAACT 60.042 33.333 0.00 0.00 0.00 2.66
5457 5835 7.071414 GCAAAAGCTACATTTCAAATCCAAAC 58.929 34.615 0.00 0.00 0.00 2.93
5458 5836 6.765036 TGCAAAAGCTACATTTCAAATCCAAA 59.235 30.769 0.00 0.00 0.00 3.28
5459 5837 6.286758 TGCAAAAGCTACATTTCAAATCCAA 58.713 32.000 0.00 0.00 0.00 3.53
5460 5838 5.851720 TGCAAAAGCTACATTTCAAATCCA 58.148 33.333 0.00 0.00 0.00 3.41
5461 5839 6.369615 ACATGCAAAAGCTACATTTCAAATCC 59.630 34.615 0.00 0.00 0.00 3.01
5462 5840 7.231607 CACATGCAAAAGCTACATTTCAAATC 58.768 34.615 0.00 0.00 0.00 2.17
5463 5841 6.347888 GCACATGCAAAAGCTACATTTCAAAT 60.348 34.615 0.00 0.00 41.59 2.32
5464 5842 5.050227 GCACATGCAAAAGCTACATTTCAAA 60.050 36.000 0.00 0.00 41.59 2.69
5465 5843 4.448395 GCACATGCAAAAGCTACATTTCAA 59.552 37.500 0.00 0.00 41.59 2.69
5466 5844 3.989167 GCACATGCAAAAGCTACATTTCA 59.011 39.130 0.00 0.00 41.59 2.69
5467 5845 3.368843 GGCACATGCAAAAGCTACATTTC 59.631 43.478 6.15 0.00 44.36 2.17
5468 5846 3.244146 TGGCACATGCAAAAGCTACATTT 60.244 39.130 6.15 0.00 44.36 2.32
5469 5847 2.299582 TGGCACATGCAAAAGCTACATT 59.700 40.909 6.15 0.00 44.36 2.71
5470 5848 1.894466 TGGCACATGCAAAAGCTACAT 59.106 42.857 6.15 0.00 44.36 2.29
5471 5849 1.326328 TGGCACATGCAAAAGCTACA 58.674 45.000 6.15 0.00 44.36 2.74
5495 5873 1.610363 TGGCACATACCTCGCAAAAA 58.390 45.000 0.00 0.00 0.00 1.94
5496 5874 3.331002 TGGCACATACCTCGCAAAA 57.669 47.368 0.00 0.00 0.00 2.44
5501 5879 5.444416 TCGAAAGAAATGGCACATACCTCG 61.444 45.833 0.00 0.00 40.16 4.63
5502 5880 3.938963 TCGAAAGAAATGGCACATACCTC 59.061 43.478 0.00 0.00 40.16 3.85
5503 5881 3.950397 TCGAAAGAAATGGCACATACCT 58.050 40.909 0.00 0.00 40.16 3.08
5504 5882 4.900635 ATCGAAAGAAATGGCACATACC 57.099 40.909 0.00 0.00 45.57 2.73
5505 5883 6.321717 TCAAATCGAAAGAAATGGCACATAC 58.678 36.000 0.00 0.00 45.57 2.39
5506 5884 6.507958 TCAAATCGAAAGAAATGGCACATA 57.492 33.333 0.00 0.00 45.57 2.29
5507 5885 5.389859 TCAAATCGAAAGAAATGGCACAT 57.610 34.783 0.00 0.00 45.57 3.21
5508 5886 5.461737 GTTTCAAATCGAAAGAAATGGCACA 59.538 36.000 11.68 0.00 44.26 4.57
5509 5887 5.461737 TGTTTCAAATCGAAAGAAATGGCAC 59.538 36.000 11.68 3.07 44.26 5.01
5510 5888 5.595885 TGTTTCAAATCGAAAGAAATGGCA 58.404 33.333 11.68 0.00 44.26 4.92
5511 5889 6.523676 TTGTTTCAAATCGAAAGAAATGGC 57.476 33.333 11.68 3.16 44.26 4.40
5517 5895 9.311916 ACATGAATTTTGTTTCAAATCGAAAGA 57.688 25.926 0.00 0.00 44.26 2.52
5518 5896 9.919348 AACATGAATTTTGTTTCAAATCGAAAG 57.081 25.926 0.00 0.00 44.26 2.62
5519 5897 9.699985 CAACATGAATTTTGTTTCAAATCGAAA 57.300 25.926 0.00 0.00 41.40 3.46
5520 5898 7.850003 GCAACATGAATTTTGTTTCAAATCGAA 59.150 29.630 0.00 0.00 38.98 3.71
5521 5899 7.010830 TGCAACATGAATTTTGTTTCAAATCGA 59.989 29.630 0.00 0.00 38.98 3.59
5522 5900 7.124471 TGCAACATGAATTTTGTTTCAAATCG 58.876 30.769 0.00 0.00 38.98 3.34
5523 5901 9.453325 AATGCAACATGAATTTTGTTTCAAATC 57.547 25.926 0.00 0.00 38.98 2.17
5524 5902 9.804758 AAATGCAACATGAATTTTGTTTCAAAT 57.195 22.222 0.00 3.06 31.71 2.32
5525 5903 9.073368 CAAATGCAACATGAATTTTGTTTCAAA 57.927 25.926 0.00 0.00 33.43 2.69
5526 5904 7.220300 GCAAATGCAACATGAATTTTGTTTCAA 59.780 29.630 0.00 0.50 33.43 2.69
5527 5905 6.691818 GCAAATGCAACATGAATTTTGTTTCA 59.308 30.769 0.00 8.96 33.43 2.69
5528 5906 6.142639 GGCAAATGCAACATGAATTTTGTTTC 59.857 34.615 7.80 2.63 44.36 2.78
5529 5907 5.978322 GGCAAATGCAACATGAATTTTGTTT 59.022 32.000 7.80 0.00 44.36 2.83
5530 5908 5.521544 GGCAAATGCAACATGAATTTTGTT 58.478 33.333 7.80 2.77 44.36 2.83
5531 5909 4.319622 CGGCAAATGCAACATGAATTTTGT 60.320 37.500 7.80 0.00 44.36 2.83
5532 5910 4.152526 CGGCAAATGCAACATGAATTTTG 58.847 39.130 7.80 0.00 44.36 2.44
5533 5911 3.814283 ACGGCAAATGCAACATGAATTTT 59.186 34.783 7.80 0.00 44.36 1.82
5534 5912 3.186817 CACGGCAAATGCAACATGAATTT 59.813 39.130 7.80 0.00 44.36 1.82
5535 5913 2.737783 CACGGCAAATGCAACATGAATT 59.262 40.909 7.80 0.00 44.36 2.17
5536 5914 2.288948 ACACGGCAAATGCAACATGAAT 60.289 40.909 7.80 0.00 44.36 2.57
5537 5915 1.068281 ACACGGCAAATGCAACATGAA 59.932 42.857 7.80 0.00 44.36 2.57
5538 5916 0.672889 ACACGGCAAATGCAACATGA 59.327 45.000 7.80 0.00 44.36 3.07
5539 5917 2.344504 TACACGGCAAATGCAACATG 57.655 45.000 7.80 0.00 44.36 3.21
5540 5918 3.377346 TTTACACGGCAAATGCAACAT 57.623 38.095 7.80 0.00 44.36 2.71
5541 5919 2.871182 TTTACACGGCAAATGCAACA 57.129 40.000 7.80 0.00 44.36 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.