Multiple sequence alignment - TraesCS7D01G217600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G217600 chr7D 100.000 3335 0 0 1 3335 178293996 178290662 0.000000e+00 6159.0
1 TraesCS7D01G217600 chr7D 79.362 1347 232 32 879 2214 178476361 178475050 0.000000e+00 905.0
2 TraesCS7D01G217600 chr7B 94.888 1780 71 9 680 2453 144485126 144483361 0.000000e+00 2765.0
3 TraesCS7D01G217600 chr7B 79.199 1298 227 31 952 2238 144518871 144517606 0.000000e+00 861.0
4 TraesCS7D01G217600 chr7B 90.795 239 19 3 402 638 144485645 144485408 1.930000e-82 316.0
5 TraesCS7D01G217600 chr7B 93.976 83 4 1 2591 2672 144482891 144482809 1.260000e-24 124.0
6 TraesCS7D01G217600 chr7B 86.408 103 12 2 2491 2591 144483349 144483247 9.780000e-21 111.0
7 TraesCS7D01G217600 chr7A 92.490 1771 80 14 689 2453 182386081 182384358 0.000000e+00 2484.0
8 TraesCS7D01G217600 chr7A 78.826 1346 241 30 879 2214 182562831 182561520 0.000000e+00 867.0
9 TraesCS7D01G217600 chr7A 89.655 87 5 3 2509 2591 182384363 182384277 1.270000e-19 108.0
10 TraesCS7D01G217600 chr5D 99.850 665 1 0 2671 3335 455817514 455818178 0.000000e+00 1223.0
11 TraesCS7D01G217600 chr5D 87.143 70 8 1 1409 1477 224760830 224760899 9.920000e-11 78.7
12 TraesCS7D01G217600 chr1D 98.494 664 10 0 2672 3335 225717888 225717225 0.000000e+00 1171.0
13 TraesCS7D01G217600 chr3B 93.223 664 44 1 2672 3335 346569975 346570637 0.000000e+00 976.0
14 TraesCS7D01G217600 chr4A 91.916 668 49 3 2672 3335 473847854 473847188 0.000000e+00 929.0
15 TraesCS7D01G217600 chr4A 87.224 407 45 1 2736 3135 412065039 412065445 1.090000e-124 457.0
16 TraesCS7D01G217600 chr4A 100.000 30 0 0 172 201 559118260 559118231 4.650000e-04 56.5
17 TraesCS7D01G217600 chr5B 95.431 569 23 3 2672 3239 591660734 591660168 0.000000e+00 904.0
18 TraesCS7D01G217600 chr5B 95.556 180 8 0 2672 2851 407589267 407589088 4.210000e-74 289.0
19 TraesCS7D01G217600 chr5B 96.154 104 4 0 2671 2774 591660048 591660151 1.590000e-38 171.0
20 TraesCS7D01G217600 chr5B 100.000 34 0 0 1 34 451010320 451010287 2.780000e-06 63.9
21 TraesCS7D01G217600 chr2B 94.762 420 22 0 2916 3335 15794783 15795202 0.000000e+00 654.0
22 TraesCS7D01G217600 chr2B 94.762 420 22 0 2916 3335 15867214 15867633 0.000000e+00 654.0
23 TraesCS7D01G217600 chr2B 94.762 420 22 0 2916 3335 15996667 15997086 0.000000e+00 654.0
24 TraesCS7D01G217600 chr2B 95.628 183 7 1 2672 2854 15992922 15993103 3.250000e-75 292.0
25 TraesCS7D01G217600 chr2B 96.591 176 5 1 2679 2854 15996498 15996672 1.170000e-74 291.0
26 TraesCS7D01G217600 chr2B 85.246 61 4 2 1 56 284327706 284327766 1.290000e-04 58.4
27 TraesCS7D01G217600 chr2D 91.083 471 34 2 2801 3264 235464742 235465211 6.070000e-177 630.0
28 TraesCS7D01G217600 chr4B 85.000 60 1 6 1 57 254401134 254401188 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G217600 chr7D 178290662 178293996 3334 True 6159.000000 6159 100.000000 1 3335 1 chr7D.!!$R1 3334
1 TraesCS7D01G217600 chr7D 178475050 178476361 1311 True 905.000000 905 79.362000 879 2214 1 chr7D.!!$R2 1335
2 TraesCS7D01G217600 chr7B 144517606 144518871 1265 True 861.000000 861 79.199000 952 2238 1 chr7B.!!$R1 1286
3 TraesCS7D01G217600 chr7B 144482809 144485645 2836 True 829.000000 2765 91.516750 402 2672 4 chr7B.!!$R2 2270
4 TraesCS7D01G217600 chr7A 182384277 182386081 1804 True 1296.000000 2484 91.072500 689 2591 2 chr7A.!!$R2 1902
5 TraesCS7D01G217600 chr7A 182561520 182562831 1311 True 867.000000 867 78.826000 879 2214 1 chr7A.!!$R1 1335
6 TraesCS7D01G217600 chr5D 455817514 455818178 664 False 1223.000000 1223 99.850000 2671 3335 1 chr5D.!!$F2 664
7 TraesCS7D01G217600 chr1D 225717225 225717888 663 True 1171.000000 1171 98.494000 2672 3335 1 chr1D.!!$R1 663
8 TraesCS7D01G217600 chr3B 346569975 346570637 662 False 976.000000 976 93.223000 2672 3335 1 chr3B.!!$F1 663
9 TraesCS7D01G217600 chr4A 473847188 473847854 666 True 929.000000 929 91.916000 2672 3335 1 chr4A.!!$R1 663
10 TraesCS7D01G217600 chr5B 591660168 591660734 566 True 904.000000 904 95.431000 2672 3239 1 chr5B.!!$R3 567
11 TraesCS7D01G217600 chr2B 15992922 15997086 4164 False 412.333333 654 95.660333 2672 3335 3 chr2B.!!$F4 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 260 0.029967 GCATCGACGAGCAGATCTCA 59.970 55.0 3.01 0.0 41.98 3.27 F
297 298 0.032815 TGCGACAAGTCCGTGAATGA 59.967 50.0 0.00 0.0 0.00 2.57 F
306 307 0.107703 TCCGTGAATGAGGATGTGCC 60.108 55.0 0.00 0.0 0.00 5.01 F
638 639 0.605589 AAGTGTAGGGCAAGCGTTCC 60.606 55.0 0.00 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1204 1453 0.402121 GGGTGGAGCAAGAAGAGGTT 59.598 55.000 0.00 0.0 0.00 3.50 R
2142 2391 2.760385 CGGTGTCCCTCTCCTCCC 60.760 72.222 0.00 0.0 0.00 4.30 R
2296 2545 3.069980 ATCCACGCTCCTCGCACTC 62.070 63.158 0.00 0.0 43.23 3.51 R
2478 2727 1.001974 TGTGCACTAGTACCAAGCTGG 59.998 52.381 19.41 0.0 45.02 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.966339 ATCAAGAAATCCAGGAAAATCATCA 57.034 32.000 0.00 0.00 0.00 3.07
27 28 7.400599 TCAAGAAATCCAGGAAAATCATCAG 57.599 36.000 0.00 0.00 0.00 2.90
28 29 7.177184 TCAAGAAATCCAGGAAAATCATCAGA 58.823 34.615 0.00 0.00 0.00 3.27
29 30 7.670979 TCAAGAAATCCAGGAAAATCATCAGAA 59.329 33.333 0.00 0.00 0.00 3.02
30 31 8.308931 CAAGAAATCCAGGAAAATCATCAGAAA 58.691 33.333 0.00 0.00 0.00 2.52
31 32 8.426569 AGAAATCCAGGAAAATCATCAGAAAA 57.573 30.769 0.00 0.00 0.00 2.29
32 33 8.873144 AGAAATCCAGGAAAATCATCAGAAAAA 58.127 29.630 0.00 0.00 0.00 1.94
33 34 9.148104 GAAATCCAGGAAAATCATCAGAAAAAG 57.852 33.333 0.00 0.00 0.00 2.27
34 35 6.594788 TCCAGGAAAATCATCAGAAAAAGG 57.405 37.500 0.00 0.00 0.00 3.11
35 36 5.481473 TCCAGGAAAATCATCAGAAAAAGGG 59.519 40.000 0.00 0.00 0.00 3.95
36 37 5.173664 CAGGAAAATCATCAGAAAAAGGGC 58.826 41.667 0.00 0.00 0.00 5.19
37 38 4.840115 AGGAAAATCATCAGAAAAAGGGCA 59.160 37.500 0.00 0.00 0.00 5.36
38 39 5.307716 AGGAAAATCATCAGAAAAAGGGCAA 59.692 36.000 0.00 0.00 0.00 4.52
39 40 5.997129 GGAAAATCATCAGAAAAAGGGCAAA 59.003 36.000 0.00 0.00 0.00 3.68
40 41 6.486320 GGAAAATCATCAGAAAAAGGGCAAAA 59.514 34.615 0.00 0.00 0.00 2.44
41 42 7.175467 GGAAAATCATCAGAAAAAGGGCAAAAT 59.825 33.333 0.00 0.00 0.00 1.82
42 43 7.677454 AAATCATCAGAAAAAGGGCAAAATC 57.323 32.000 0.00 0.00 0.00 2.17
43 44 5.151297 TCATCAGAAAAAGGGCAAAATCC 57.849 39.130 0.00 0.00 0.00 3.01
44 45 4.592351 TCATCAGAAAAAGGGCAAAATCCA 59.408 37.500 0.00 0.00 0.00 3.41
45 46 4.605640 TCAGAAAAAGGGCAAAATCCAG 57.394 40.909 0.00 0.00 0.00 3.86
46 47 3.324556 TCAGAAAAAGGGCAAAATCCAGG 59.675 43.478 0.00 0.00 0.00 4.45
47 48 3.324556 CAGAAAAAGGGCAAAATCCAGGA 59.675 43.478 0.00 0.00 0.00 3.86
48 49 4.019950 CAGAAAAAGGGCAAAATCCAGGAT 60.020 41.667 0.00 0.00 0.00 3.24
49 50 3.986996 AAAAGGGCAAAATCCAGGATG 57.013 42.857 1.44 0.00 0.00 3.51
50 51 2.629017 AAGGGCAAAATCCAGGATGT 57.371 45.000 1.44 0.00 0.00 3.06
51 52 2.629017 AGGGCAAAATCCAGGATGTT 57.371 45.000 1.44 0.00 0.00 2.71
52 53 3.756082 AGGGCAAAATCCAGGATGTTA 57.244 42.857 4.34 0.00 0.00 2.41
53 54 3.365472 AGGGCAAAATCCAGGATGTTAC 58.635 45.455 4.34 0.00 0.00 2.50
54 55 3.096092 GGGCAAAATCCAGGATGTTACA 58.904 45.455 4.34 0.00 0.00 2.41
55 56 3.131046 GGGCAAAATCCAGGATGTTACAG 59.869 47.826 4.34 0.00 0.00 2.74
56 57 3.763897 GGCAAAATCCAGGATGTTACAGT 59.236 43.478 4.34 0.00 0.00 3.55
57 58 4.947388 GGCAAAATCCAGGATGTTACAGTA 59.053 41.667 4.34 0.00 0.00 2.74
58 59 5.066505 GGCAAAATCCAGGATGTTACAGTAG 59.933 44.000 4.34 0.00 0.00 2.57
59 60 5.449177 GCAAAATCCAGGATGTTACAGTAGC 60.449 44.000 4.34 0.00 0.00 3.58
60 61 3.735237 ATCCAGGATGTTACAGTAGCG 57.265 47.619 0.00 0.00 0.00 4.26
61 62 2.730382 TCCAGGATGTTACAGTAGCGA 58.270 47.619 0.00 0.00 0.00 4.93
62 63 2.426024 TCCAGGATGTTACAGTAGCGAC 59.574 50.000 0.00 0.00 0.00 5.19
63 64 2.451132 CAGGATGTTACAGTAGCGACG 58.549 52.381 0.00 0.00 0.00 5.12
64 65 1.197910 GGATGTTACAGTAGCGACGC 58.802 55.000 13.03 13.03 0.00 5.19
65 66 1.468565 GGATGTTACAGTAGCGACGCA 60.469 52.381 23.70 5.17 0.00 5.24
66 67 2.460918 GATGTTACAGTAGCGACGCAT 58.539 47.619 23.70 9.74 0.00 4.73
67 68 1.624487 TGTTACAGTAGCGACGCATG 58.376 50.000 23.70 18.85 0.00 4.06
68 69 1.200484 TGTTACAGTAGCGACGCATGA 59.800 47.619 23.70 3.57 0.00 3.07
69 70 1.846782 GTTACAGTAGCGACGCATGAG 59.153 52.381 23.70 11.44 0.00 2.90
70 71 1.375551 TACAGTAGCGACGCATGAGA 58.624 50.000 23.70 8.45 0.00 3.27
71 72 0.099613 ACAGTAGCGACGCATGAGAG 59.900 55.000 23.70 8.89 0.00 3.20
72 73 0.593518 CAGTAGCGACGCATGAGAGG 60.594 60.000 23.70 0.49 0.00 3.69
73 74 0.748367 AGTAGCGACGCATGAGAGGA 60.748 55.000 23.70 0.00 0.00 3.71
74 75 0.312416 GTAGCGACGCATGAGAGGAT 59.688 55.000 23.70 0.00 0.00 3.24
75 76 0.593618 TAGCGACGCATGAGAGGATC 59.406 55.000 23.70 0.00 0.00 3.36
76 77 2.013483 GCGACGCATGAGAGGATCG 61.013 63.158 16.42 3.03 42.67 3.69
77 78 1.371022 CGACGCATGAGAGGATCGG 60.371 63.158 2.50 0.00 42.67 4.18
78 79 1.786049 CGACGCATGAGAGGATCGGA 61.786 60.000 2.50 0.00 42.67 4.55
79 80 0.600557 GACGCATGAGAGGATCGGAT 59.399 55.000 2.50 0.00 42.67 4.18
80 81 0.600557 ACGCATGAGAGGATCGGATC 59.399 55.000 9.54 9.54 42.67 3.36
81 82 0.600057 CGCATGAGAGGATCGGATCA 59.400 55.000 18.99 0.48 42.67 2.92
82 83 1.402588 CGCATGAGAGGATCGGATCAG 60.403 57.143 18.99 0.00 42.67 2.90
83 84 1.891811 GCATGAGAGGATCGGATCAGA 59.108 52.381 18.99 0.00 42.67 3.27
84 85 2.496871 GCATGAGAGGATCGGATCAGAT 59.503 50.000 18.99 8.17 42.67 2.90
85 86 3.429272 GCATGAGAGGATCGGATCAGATC 60.429 52.174 23.09 23.09 44.62 2.75
86 87 3.515602 TGAGAGGATCGGATCAGATCA 57.484 47.619 29.23 13.40 46.55 2.92
87 88 3.153130 TGAGAGGATCGGATCAGATCAC 58.847 50.000 29.23 22.89 46.55 3.06
88 89 3.153130 GAGAGGATCGGATCAGATCACA 58.847 50.000 29.23 0.00 46.55 3.58
89 90 3.156293 AGAGGATCGGATCAGATCACAG 58.844 50.000 29.23 3.44 46.55 3.66
90 91 3.153130 GAGGATCGGATCAGATCACAGA 58.847 50.000 29.23 8.52 46.55 3.41
91 92 3.156293 AGGATCGGATCAGATCACAGAG 58.844 50.000 29.23 0.00 46.55 3.35
92 93 3.153130 GGATCGGATCAGATCACAGAGA 58.847 50.000 29.23 3.97 46.55 3.10
93 94 3.191162 GGATCGGATCAGATCACAGAGAG 59.809 52.174 29.23 0.00 46.55 3.20
94 95 2.580962 TCGGATCAGATCACAGAGAGG 58.419 52.381 12.66 0.00 0.00 3.69
95 96 1.612950 CGGATCAGATCACAGAGAGGG 59.387 57.143 12.66 0.00 0.00 4.30
96 97 2.676748 GGATCAGATCACAGAGAGGGT 58.323 52.381 12.66 0.00 0.00 4.34
97 98 2.364970 GGATCAGATCACAGAGAGGGTG 59.635 54.545 12.66 0.00 37.60 4.61
98 99 2.612285 TCAGATCACAGAGAGGGTGT 57.388 50.000 0.00 0.00 37.52 4.16
99 100 2.174360 TCAGATCACAGAGAGGGTGTG 58.826 52.381 0.00 0.00 45.65 3.82
100 101 0.901124 AGATCACAGAGAGGGTGTGC 59.099 55.000 0.00 0.00 44.22 4.57
101 102 0.610174 GATCACAGAGAGGGTGTGCA 59.390 55.000 0.00 0.00 44.22 4.57
102 103 0.612229 ATCACAGAGAGGGTGTGCAG 59.388 55.000 0.00 0.00 44.22 4.41
103 104 0.469892 TCACAGAGAGGGTGTGCAGA 60.470 55.000 0.00 0.00 44.22 4.26
104 105 0.037512 CACAGAGAGGGTGTGCAGAG 60.038 60.000 0.00 0.00 39.00 3.35
105 106 0.178950 ACAGAGAGGGTGTGCAGAGA 60.179 55.000 0.00 0.00 0.00 3.10
106 107 0.531657 CAGAGAGGGTGTGCAGAGAG 59.468 60.000 0.00 0.00 0.00 3.20
107 108 0.614415 AGAGAGGGTGTGCAGAGAGG 60.614 60.000 0.00 0.00 0.00 3.69
108 109 0.613292 GAGAGGGTGTGCAGAGAGGA 60.613 60.000 0.00 0.00 0.00 3.71
109 110 0.614415 AGAGGGTGTGCAGAGAGGAG 60.614 60.000 0.00 0.00 0.00 3.69
110 111 0.613292 GAGGGTGTGCAGAGAGGAGA 60.613 60.000 0.00 0.00 0.00 3.71
111 112 0.614415 AGGGTGTGCAGAGAGGAGAG 60.614 60.000 0.00 0.00 0.00 3.20
112 113 1.612395 GGGTGTGCAGAGAGGAGAGG 61.612 65.000 0.00 0.00 0.00 3.69
113 114 0.613292 GGTGTGCAGAGAGGAGAGGA 60.613 60.000 0.00 0.00 0.00 3.71
114 115 1.484038 GTGTGCAGAGAGGAGAGGAT 58.516 55.000 0.00 0.00 0.00 3.24
115 116 2.660572 GTGTGCAGAGAGGAGAGGATA 58.339 52.381 0.00 0.00 0.00 2.59
116 117 3.230134 GTGTGCAGAGAGGAGAGGATAT 58.770 50.000 0.00 0.00 0.00 1.63
117 118 3.005684 GTGTGCAGAGAGGAGAGGATATG 59.994 52.174 0.00 0.00 0.00 1.78
118 119 2.562298 GTGCAGAGAGGAGAGGATATGG 59.438 54.545 0.00 0.00 0.00 2.74
119 120 2.178580 GCAGAGAGGAGAGGATATGGG 58.821 57.143 0.00 0.00 0.00 4.00
120 121 2.818921 CAGAGAGGAGAGGATATGGGG 58.181 57.143 0.00 0.00 0.00 4.96
121 122 2.111613 CAGAGAGGAGAGGATATGGGGT 59.888 54.545 0.00 0.00 0.00 4.95
122 123 2.800788 AGAGAGGAGAGGATATGGGGTT 59.199 50.000 0.00 0.00 0.00 4.11
123 124 2.903135 GAGAGGAGAGGATATGGGGTTG 59.097 54.545 0.00 0.00 0.00 3.77
124 125 1.981495 GAGGAGAGGATATGGGGTTGG 59.019 57.143 0.00 0.00 0.00 3.77
125 126 0.402121 GGAGAGGATATGGGGTTGGC 59.598 60.000 0.00 0.00 0.00 4.52
126 127 0.402121 GAGAGGATATGGGGTTGGCC 59.598 60.000 0.00 0.00 0.00 5.36
127 128 1.073199 GAGGATATGGGGTTGGCCG 59.927 63.158 0.00 0.00 34.97 6.13
128 129 1.385347 AGGATATGGGGTTGGCCGA 60.385 57.895 0.00 0.00 34.97 5.54
129 130 1.228154 GGATATGGGGTTGGCCGAC 60.228 63.158 15.51 15.51 34.97 4.79
130 131 1.597027 GATATGGGGTTGGCCGACG 60.597 63.158 17.21 0.00 34.97 5.12
131 132 3.767630 ATATGGGGTTGGCCGACGC 62.768 63.158 28.10 28.10 34.97 5.19
136 137 2.975799 GGTTGGCCGACGCAAGAA 60.976 61.111 17.21 0.00 43.62 2.52
137 138 2.251371 GTTGGCCGACGCAAGAAC 59.749 61.111 7.56 0.00 43.62 3.01
138 139 2.975799 TTGGCCGACGCAAGAACC 60.976 61.111 0.00 0.00 43.62 3.62
140 141 4.699522 GGCCGACGCAAGAACCCT 62.700 66.667 0.00 0.00 43.62 4.34
141 142 3.423154 GCCGACGCAAGAACCCTG 61.423 66.667 0.00 0.00 43.62 4.45
142 143 3.423154 CCGACGCAAGAACCCTGC 61.423 66.667 0.00 0.00 43.62 4.85
143 144 2.357517 CGACGCAAGAACCCTGCT 60.358 61.111 0.00 0.00 43.62 4.24
144 145 1.961277 CGACGCAAGAACCCTGCTT 60.961 57.895 0.00 0.00 43.62 3.91
145 146 0.669318 CGACGCAAGAACCCTGCTTA 60.669 55.000 0.00 0.00 43.62 3.09
146 147 1.519408 GACGCAAGAACCCTGCTTAA 58.481 50.000 0.00 0.00 43.62 1.85
147 148 1.877443 GACGCAAGAACCCTGCTTAAA 59.123 47.619 0.00 0.00 43.62 1.52
148 149 2.292292 GACGCAAGAACCCTGCTTAAAA 59.708 45.455 0.00 0.00 43.62 1.52
149 150 2.890945 ACGCAAGAACCCTGCTTAAAAT 59.109 40.909 0.00 0.00 43.62 1.82
150 151 4.076394 ACGCAAGAACCCTGCTTAAAATA 58.924 39.130 0.00 0.00 43.62 1.40
151 152 4.156008 ACGCAAGAACCCTGCTTAAAATAG 59.844 41.667 0.00 0.00 43.62 1.73
152 153 4.424626 GCAAGAACCCTGCTTAAAATAGC 58.575 43.478 0.00 0.00 41.59 2.97
153 154 4.662145 CAAGAACCCTGCTTAAAATAGCG 58.338 43.478 0.00 0.00 44.18 4.26
154 155 3.951663 AGAACCCTGCTTAAAATAGCGT 58.048 40.909 0.00 0.00 44.18 5.07
155 156 3.689649 AGAACCCTGCTTAAAATAGCGTG 59.310 43.478 0.00 0.00 44.18 5.34
156 157 3.343941 ACCCTGCTTAAAATAGCGTGA 57.656 42.857 0.00 0.00 44.18 4.35
157 158 3.270877 ACCCTGCTTAAAATAGCGTGAG 58.729 45.455 0.00 0.00 44.18 3.51
169 170 4.056125 CGTGAGCAGGCGGACAGA 62.056 66.667 0.00 0.00 0.00 3.41
170 171 2.433318 GTGAGCAGGCGGACAGAC 60.433 66.667 0.00 0.00 0.00 3.51
171 172 4.056125 TGAGCAGGCGGACAGACG 62.056 66.667 0.00 0.00 0.00 4.18
179 180 4.717629 CGGACAGACGCCGCTTCA 62.718 66.667 0.00 0.00 42.55 3.02
180 181 2.357034 GGACAGACGCCGCTTCAA 60.357 61.111 0.00 0.00 0.00 2.69
181 182 1.741770 GGACAGACGCCGCTTCAAT 60.742 57.895 0.00 0.00 0.00 2.57
182 183 1.421485 GACAGACGCCGCTTCAATG 59.579 57.895 0.00 0.00 0.00 2.82
183 184 2.099062 CAGACGCCGCTTCAATGC 59.901 61.111 0.00 0.00 0.00 3.56
203 204 4.281946 CGTAGCGGTCGAAGTAGC 57.718 61.111 0.00 0.00 0.00 3.58
204 205 1.298190 CGTAGCGGTCGAAGTAGCC 60.298 63.158 0.00 0.00 0.00 3.93
205 206 1.712977 CGTAGCGGTCGAAGTAGCCT 61.713 60.000 0.00 0.00 0.00 4.58
206 207 0.455005 GTAGCGGTCGAAGTAGCCTT 59.545 55.000 0.00 0.00 0.00 4.35
207 208 0.737219 TAGCGGTCGAAGTAGCCTTC 59.263 55.000 0.00 0.00 43.09 3.46
208 209 0.966370 AGCGGTCGAAGTAGCCTTCT 60.966 55.000 0.00 0.00 44.12 2.85
209 210 0.525882 GCGGTCGAAGTAGCCTTCTC 60.526 60.000 0.00 0.00 44.12 2.87
210 211 0.809385 CGGTCGAAGTAGCCTTCTCA 59.191 55.000 0.00 0.00 44.12 3.27
211 212 1.202200 CGGTCGAAGTAGCCTTCTCAG 60.202 57.143 0.00 0.00 44.12 3.35
212 213 1.819903 GGTCGAAGTAGCCTTCTCAGT 59.180 52.381 0.00 0.00 44.12 3.41
213 214 2.231721 GGTCGAAGTAGCCTTCTCAGTT 59.768 50.000 0.00 0.00 44.12 3.16
214 215 3.246619 GTCGAAGTAGCCTTCTCAGTTG 58.753 50.000 0.00 0.00 44.12 3.16
215 216 1.996191 CGAAGTAGCCTTCTCAGTTGC 59.004 52.381 1.93 0.00 44.12 4.17
216 217 2.351455 GAAGTAGCCTTCTCAGTTGCC 58.649 52.381 0.00 0.00 43.18 4.52
217 218 1.352083 AGTAGCCTTCTCAGTTGCCA 58.648 50.000 0.00 0.00 0.00 4.92
218 219 1.002544 AGTAGCCTTCTCAGTTGCCAC 59.997 52.381 0.00 0.00 0.00 5.01
219 220 1.002544 GTAGCCTTCTCAGTTGCCACT 59.997 52.381 0.00 0.00 0.00 4.00
244 245 3.044305 GGCTGATACGCCCGCATC 61.044 66.667 0.00 0.00 44.41 3.91
245 246 3.406361 GCTGATACGCCCGCATCG 61.406 66.667 0.00 0.00 0.00 3.84
246 247 2.335011 CTGATACGCCCGCATCGA 59.665 61.111 0.00 0.00 0.00 3.59
247 248 2.016704 CTGATACGCCCGCATCGAC 61.017 63.158 0.00 0.00 0.00 4.20
248 249 3.097728 GATACGCCCGCATCGACG 61.098 66.667 0.00 0.00 33.84 5.12
249 250 3.531920 GATACGCCCGCATCGACGA 62.532 63.158 0.00 0.00 34.06 4.20
250 251 3.538028 ATACGCCCGCATCGACGAG 62.538 63.158 3.01 0.00 34.06 4.18
254 255 4.193334 CCCGCATCGACGAGCAGA 62.193 66.667 15.99 0.00 34.06 4.26
255 256 2.026734 CCGCATCGACGAGCAGAT 59.973 61.111 15.99 0.00 34.06 2.90
256 257 2.013483 CCGCATCGACGAGCAGATC 61.013 63.158 15.99 0.00 34.06 2.75
257 258 1.009108 CGCATCGACGAGCAGATCT 60.009 57.895 15.99 0.00 34.06 2.75
258 259 0.996229 CGCATCGACGAGCAGATCTC 60.996 60.000 15.99 0.00 38.47 2.75
259 260 0.029967 GCATCGACGAGCAGATCTCA 59.970 55.000 3.01 0.00 41.98 3.27
260 261 1.752753 CATCGACGAGCAGATCTCAC 58.247 55.000 3.01 0.00 41.98 3.51
261 262 1.064654 CATCGACGAGCAGATCTCACA 59.935 52.381 3.01 0.00 41.98 3.58
262 263 0.729690 TCGACGAGCAGATCTCACAG 59.270 55.000 0.00 0.00 41.98 3.66
263 264 0.449786 CGACGAGCAGATCTCACAGT 59.550 55.000 0.00 0.00 41.98 3.55
264 265 1.135546 CGACGAGCAGATCTCACAGTT 60.136 52.381 0.00 0.00 41.98 3.16
265 266 2.257894 GACGAGCAGATCTCACAGTTG 58.742 52.381 0.00 0.00 41.98 3.16
266 267 1.615883 ACGAGCAGATCTCACAGTTGT 59.384 47.619 0.00 0.00 41.98 3.32
267 268 1.991264 CGAGCAGATCTCACAGTTGTG 59.009 52.381 5.91 5.91 46.91 3.33
268 269 1.731160 GAGCAGATCTCACAGTTGTGC 59.269 52.381 7.38 0.00 45.25 4.57
269 270 1.347050 AGCAGATCTCACAGTTGTGCT 59.653 47.619 7.38 1.42 45.25 4.40
270 271 4.710555 GAGCAGATCTCACAGTTGTGCTG 61.711 52.174 10.12 9.58 42.35 4.41
277 278 4.307258 CAGTTGTGCTGCGTTTGG 57.693 55.556 0.00 0.00 38.52 3.28
278 279 1.433064 CAGTTGTGCTGCGTTTGGT 59.567 52.632 0.00 0.00 38.52 3.67
279 280 0.866906 CAGTTGTGCTGCGTTTGGTG 60.867 55.000 0.00 0.00 38.52 4.17
280 281 2.103934 TTGTGCTGCGTTTGGTGC 59.896 55.556 0.00 0.00 0.00 5.01
281 282 3.748071 TTGTGCTGCGTTTGGTGCG 62.748 57.895 0.00 0.00 34.24 5.34
282 283 3.947841 GTGCTGCGTTTGGTGCGA 61.948 61.111 0.00 0.00 34.24 5.10
283 284 3.947841 TGCTGCGTTTGGTGCGAC 61.948 61.111 0.00 0.00 34.24 5.19
284 285 3.947841 GCTGCGTTTGGTGCGACA 61.948 61.111 0.00 0.00 34.24 4.35
285 286 2.712539 CTGCGTTTGGTGCGACAA 59.287 55.556 0.00 0.00 34.24 3.18
286 287 1.369209 CTGCGTTTGGTGCGACAAG 60.369 57.895 0.00 0.00 34.24 3.16
287 288 2.047151 CTGCGTTTGGTGCGACAAGT 62.047 55.000 0.00 0.00 34.24 3.16
288 289 1.368850 GCGTTTGGTGCGACAAGTC 60.369 57.895 0.00 0.00 0.00 3.01
289 290 1.278637 CGTTTGGTGCGACAAGTCC 59.721 57.895 0.00 0.00 0.00 3.85
290 291 1.278637 GTTTGGTGCGACAAGTCCG 59.721 57.895 0.00 0.00 0.00 4.79
291 292 1.153329 TTTGGTGCGACAAGTCCGT 60.153 52.632 0.00 0.00 0.00 4.69
292 293 1.433053 TTTGGTGCGACAAGTCCGTG 61.433 55.000 0.00 0.00 0.00 4.94
293 294 2.028484 GGTGCGACAAGTCCGTGA 59.972 61.111 0.00 0.00 0.00 4.35
294 295 1.593209 GGTGCGACAAGTCCGTGAA 60.593 57.895 0.00 0.00 0.00 3.18
295 296 0.949105 GGTGCGACAAGTCCGTGAAT 60.949 55.000 0.00 0.00 0.00 2.57
296 297 0.163788 GTGCGACAAGTCCGTGAATG 59.836 55.000 0.00 0.00 0.00 2.67
297 298 0.032815 TGCGACAAGTCCGTGAATGA 59.967 50.000 0.00 0.00 0.00 2.57
298 299 0.716108 GCGACAAGTCCGTGAATGAG 59.284 55.000 0.00 0.00 0.00 2.90
299 300 1.350193 CGACAAGTCCGTGAATGAGG 58.650 55.000 0.00 0.00 0.00 3.86
300 301 1.067846 CGACAAGTCCGTGAATGAGGA 60.068 52.381 0.00 0.00 0.00 3.71
301 302 2.417379 CGACAAGTCCGTGAATGAGGAT 60.417 50.000 0.00 0.00 38.97 3.24
302 303 2.932614 GACAAGTCCGTGAATGAGGATG 59.067 50.000 0.00 0.00 38.97 3.51
303 304 2.303022 ACAAGTCCGTGAATGAGGATGT 59.697 45.455 0.00 0.00 38.97 3.06
304 305 2.674852 CAAGTCCGTGAATGAGGATGTG 59.325 50.000 0.00 0.00 38.97 3.21
305 306 1.009829 GTCCGTGAATGAGGATGTGC 58.990 55.000 0.00 0.00 38.97 4.57
306 307 0.107703 TCCGTGAATGAGGATGTGCC 60.108 55.000 0.00 0.00 0.00 5.01
315 316 3.425422 GGATGTGCCTTGGCGATC 58.575 61.111 7.18 10.32 0.00 3.69
316 317 2.537560 GGATGTGCCTTGGCGATCG 61.538 63.158 11.69 11.69 0.00 3.69
317 318 3.173390 GATGTGCCTTGGCGATCGC 62.173 63.158 31.52 31.52 41.06 4.58
320 321 4.529219 TGCCTTGGCGATCGCGAT 62.529 61.111 31.76 23.97 43.06 4.58
321 322 4.005472 GCCTTGGCGATCGCGATG 62.005 66.667 31.76 27.84 43.06 3.84
322 323 2.586079 CCTTGGCGATCGCGATGT 60.586 61.111 31.76 3.33 43.06 3.06
323 324 2.589492 CCTTGGCGATCGCGATGTC 61.589 63.158 31.76 19.84 43.06 3.06
324 325 2.920964 CTTGGCGATCGCGATGTCG 61.921 63.158 31.76 26.00 43.06 4.35
345 346 3.468140 GGGGGCGTCCTCCACTAC 61.468 72.222 5.77 0.00 35.33 2.73
346 347 3.468140 GGGGCGTCCTCCACTACC 61.468 72.222 5.77 0.00 0.00 3.18
347 348 2.363925 GGGCGTCCTCCACTACCT 60.364 66.667 0.00 0.00 0.00 3.08
348 349 1.076485 GGGCGTCCTCCACTACCTA 60.076 63.158 0.00 0.00 0.00 3.08
349 350 1.108132 GGGCGTCCTCCACTACCTAG 61.108 65.000 0.00 0.00 0.00 3.02
350 351 1.734748 GCGTCCTCCACTACCTAGC 59.265 63.158 0.00 0.00 0.00 3.42
351 352 0.752376 GCGTCCTCCACTACCTAGCT 60.752 60.000 0.00 0.00 0.00 3.32
352 353 1.025812 CGTCCTCCACTACCTAGCTG 58.974 60.000 0.00 0.00 0.00 4.24
353 354 1.408405 CGTCCTCCACTACCTAGCTGA 60.408 57.143 0.00 0.00 0.00 4.26
354 355 2.303175 GTCCTCCACTACCTAGCTGAG 58.697 57.143 0.00 0.00 0.00 3.35
355 356 1.923850 TCCTCCACTACCTAGCTGAGT 59.076 52.381 0.00 0.00 0.00 3.41
356 357 2.028130 CCTCCACTACCTAGCTGAGTG 58.972 57.143 0.00 4.73 40.26 3.51
357 358 1.407258 CTCCACTACCTAGCTGAGTGC 59.593 57.143 12.08 0.00 39.42 4.40
367 368 4.320456 CTGAGTGCGGTGGTGGCT 62.320 66.667 0.00 0.00 0.00 4.75
368 369 4.314440 TGAGTGCGGTGGTGGCTC 62.314 66.667 0.00 0.00 0.00 4.70
410 411 1.153549 GCAGTAGAGGGCAACGGAG 60.154 63.158 0.00 0.00 37.60 4.63
557 558 5.943706 TGAATTTTTGTCATTTGCATGGG 57.056 34.783 0.00 0.00 0.00 4.00
580 581 8.922237 TGGGTTACATCATGTTTGCATAATATT 58.078 29.630 0.00 0.00 33.30 1.28
616 617 9.267084 AGTTTAAATTTTGTTTGTATTGCGGAT 57.733 25.926 0.00 0.00 0.00 4.18
623 624 4.793071 TGTTTGTATTGCGGATGAAAGTG 58.207 39.130 0.00 0.00 0.00 3.16
634 635 1.398390 GATGAAAGTGTAGGGCAAGCG 59.602 52.381 0.00 0.00 0.00 4.68
638 639 0.605589 AAGTGTAGGGCAAGCGTTCC 60.606 55.000 0.00 0.00 0.00 3.62
639 640 2.047655 TGTAGGGCAAGCGTTCCG 60.048 61.111 0.00 0.00 0.00 4.30
641 642 1.670083 GTAGGGCAAGCGTTCCGTT 60.670 57.895 0.00 0.00 0.00 4.44
642 643 1.071814 TAGGGCAAGCGTTCCGTTT 59.928 52.632 0.00 0.00 0.00 3.60
663 728 6.454186 CGTTTATGCCCTAACGTAACTTGTAC 60.454 42.308 0.00 0.00 41.47 2.90
664 729 4.813750 ATGCCCTAACGTAACTTGTACT 57.186 40.909 0.00 0.00 0.00 2.73
665 730 5.920193 ATGCCCTAACGTAACTTGTACTA 57.080 39.130 0.00 0.00 0.00 1.82
676 741 7.596494 ACGTAACTTGTACTAGCTTTATCACA 58.404 34.615 4.10 0.00 0.00 3.58
678 743 8.532341 CGTAACTTGTACTAGCTTTATCACATG 58.468 37.037 4.10 0.00 0.00 3.21
716 960 5.493133 TTTGTAACAGCGTGTTCATTCTT 57.507 34.783 6.64 0.00 40.22 2.52
717 961 5.493133 TTGTAACAGCGTGTTCATTCTTT 57.507 34.783 6.64 0.00 40.22 2.52
719 963 2.949714 ACAGCGTGTTCATTCTTTCG 57.050 45.000 0.00 0.00 0.00 3.46
771 1020 5.446143 TGGCAGATCGTTTGTTTAACAAT 57.554 34.783 11.50 0.00 38.00 2.71
782 1031 7.114811 TCGTTTGTTTAACAATAGTCGAGGTAC 59.885 37.037 11.50 2.17 38.00 3.34
783 1032 7.115378 CGTTTGTTTAACAATAGTCGAGGTACT 59.885 37.037 11.50 0.00 38.97 2.73
784 1033 9.410556 GTTTGTTTAACAATAGTCGAGGTACTA 57.589 33.333 11.50 0.00 36.93 1.82
798 1047 8.082852 AGTCGAGGTACTATACAGCAATTATTG 58.917 37.037 0.00 0.00 41.55 1.90
850 1099 2.921754 GTCGTATTACTTGCTGACGCTT 59.078 45.455 0.00 0.00 36.97 4.68
963 1212 1.134788 CGCCTTATTCCTCACCGTCTT 60.135 52.381 0.00 0.00 0.00 3.01
978 1227 1.671850 CGTCTTGTCCGCCATTACAGT 60.672 52.381 0.00 0.00 0.00 3.55
982 1231 2.093306 TGTCCGCCATTACAGTCTTG 57.907 50.000 0.00 0.00 0.00 3.02
1000 1249 3.887110 TCTTGACCTTCTCCGCGATATTA 59.113 43.478 8.23 0.00 0.00 0.98
1002 1251 4.174411 TGACCTTCTCCGCGATATTATG 57.826 45.455 8.23 0.00 0.00 1.90
1013 1262 1.359848 GATATTATGCCCGCTCACCG 58.640 55.000 0.00 0.00 0.00 4.94
1204 1453 2.237143 ACCGATGGATTCTTGCTTCAGA 59.763 45.455 0.00 0.00 0.00 3.27
1522 1771 3.062466 CTCACCGGAGCGAGTGGA 61.062 66.667 9.46 0.00 33.67 4.02
1633 1882 2.037136 CAGGAGGCCGTCTGCTTTG 61.037 63.158 13.91 0.00 41.66 2.77
1642 1891 1.375268 GTCTGCTTTGGCGAGCTCT 60.375 57.895 12.85 0.00 43.11 4.09
1852 2101 4.860881 TAGCAGGGGAGGCGGAGG 62.861 72.222 0.00 0.00 36.08 4.30
2328 2577 1.396301 CGTGGATGCTCTGCTCTTTTC 59.604 52.381 0.00 0.00 0.00 2.29
2333 2582 0.608130 TGCTCTGCTCTTTTCGGCTA 59.392 50.000 0.00 0.00 0.00 3.93
2369 2618 2.570135 GAGGGATAAAAGCTCTGCCAG 58.430 52.381 0.00 0.00 0.00 4.85
2400 2649 3.155501 GCTTAATACTAGAGGGCCTCGA 58.844 50.000 27.11 21.54 35.36 4.04
2453 2702 1.400494 GCACGACTCAACAACCAGTTT 59.600 47.619 0.00 0.00 38.74 2.66
2454 2703 2.791158 GCACGACTCAACAACCAGTTTG 60.791 50.000 0.00 0.00 38.74 2.93
2500 2749 3.138304 CAGCTTGGTACTAGTGCACAAA 58.862 45.455 21.04 5.62 0.00 2.83
2506 2755 5.136816 TGGTACTAGTGCACAAACGAATA 57.863 39.130 21.04 0.00 0.00 1.75
2512 2761 1.535462 GTGCACAAACGAATAGCCAGT 59.465 47.619 13.17 0.00 0.00 4.00
2516 2765 3.067106 CACAAACGAATAGCCAGTCAGT 58.933 45.455 0.00 0.00 0.00 3.41
2580 2832 4.025229 TCGTGTGTGAAATGTGAGCTTTAC 60.025 41.667 0.00 0.00 0.00 2.01
2591 2843 1.529438 TGAGCTTTACTGCGAAAACGG 59.471 47.619 0.00 0.00 38.13 4.44
2593 2845 2.215196 AGCTTTACTGCGAAAACGGAA 58.785 42.857 0.00 0.00 38.13 4.30
2595 2847 2.717519 GCTTTACTGCGAAAACGGAAAC 59.282 45.455 0.00 0.00 0.00 2.78
2596 2848 3.789459 GCTTTACTGCGAAAACGGAAACA 60.789 43.478 0.00 0.00 0.00 2.83
2597 2849 4.533222 CTTTACTGCGAAAACGGAAACAT 58.467 39.130 0.00 0.00 0.00 2.71
2598 2850 2.681152 ACTGCGAAAACGGAAACATC 57.319 45.000 0.00 0.00 0.00 3.06
2599 2851 1.944024 ACTGCGAAAACGGAAACATCA 59.056 42.857 0.00 0.00 0.00 3.07
2600 2852 2.286772 ACTGCGAAAACGGAAACATCAC 60.287 45.455 0.00 0.00 0.00 3.06
2602 2854 1.265905 GCGAAAACGGAAACATCACCT 59.734 47.619 0.00 0.00 0.00 4.00
2603 2855 2.287368 GCGAAAACGGAAACATCACCTT 60.287 45.455 0.00 0.00 0.00 3.50
2642 3250 3.004946 TCAGCAGGGCAGCAGCTA 61.005 61.111 0.00 0.00 41.70 3.32
2643 3251 2.823147 CAGCAGGGCAGCAGCTAC 60.823 66.667 0.00 0.00 41.70 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.818860 TGATGATTTTCCTGGATTTCTTGATTT 58.181 29.630 0.00 0.00 0.00 2.17
1 2 8.370266 TGATGATTTTCCTGGATTTCTTGATT 57.630 30.769 0.00 0.00 0.00 2.57
2 3 7.837689 TCTGATGATTTTCCTGGATTTCTTGAT 59.162 33.333 0.00 0.00 0.00 2.57
3 4 7.177184 TCTGATGATTTTCCTGGATTTCTTGA 58.823 34.615 0.00 0.00 0.00 3.02
4 5 7.400599 TCTGATGATTTTCCTGGATTTCTTG 57.599 36.000 0.00 0.00 0.00 3.02
6 7 8.426569 TTTTCTGATGATTTTCCTGGATTTCT 57.573 30.769 0.00 0.00 0.00 2.52
7 8 9.148104 CTTTTTCTGATGATTTTCCTGGATTTC 57.852 33.333 0.00 0.00 0.00 2.17
8 9 8.098912 CCTTTTTCTGATGATTTTCCTGGATTT 58.901 33.333 0.00 0.00 0.00 2.17
9 10 7.310858 CCCTTTTTCTGATGATTTTCCTGGATT 60.311 37.037 0.00 0.00 0.00 3.01
10 11 6.155737 CCCTTTTTCTGATGATTTTCCTGGAT 59.844 38.462 0.00 0.00 0.00 3.41
11 12 5.481473 CCCTTTTTCTGATGATTTTCCTGGA 59.519 40.000 0.00 0.00 0.00 3.86
12 13 5.727434 CCCTTTTTCTGATGATTTTCCTGG 58.273 41.667 0.00 0.00 0.00 4.45
13 14 5.173664 GCCCTTTTTCTGATGATTTTCCTG 58.826 41.667 0.00 0.00 0.00 3.86
14 15 4.840115 TGCCCTTTTTCTGATGATTTTCCT 59.160 37.500 0.00 0.00 0.00 3.36
15 16 5.151297 TGCCCTTTTTCTGATGATTTTCC 57.849 39.130 0.00 0.00 0.00 3.13
16 17 7.495135 TTTTGCCCTTTTTCTGATGATTTTC 57.505 32.000 0.00 0.00 0.00 2.29
17 18 7.175467 GGATTTTGCCCTTTTTCTGATGATTTT 59.825 33.333 0.00 0.00 0.00 1.82
18 19 6.656270 GGATTTTGCCCTTTTTCTGATGATTT 59.344 34.615 0.00 0.00 0.00 2.17
19 20 6.175471 GGATTTTGCCCTTTTTCTGATGATT 58.825 36.000 0.00 0.00 0.00 2.57
20 21 5.248934 TGGATTTTGCCCTTTTTCTGATGAT 59.751 36.000 0.00 0.00 0.00 2.45
21 22 4.592351 TGGATTTTGCCCTTTTTCTGATGA 59.408 37.500 0.00 0.00 0.00 2.92
22 23 4.897140 TGGATTTTGCCCTTTTTCTGATG 58.103 39.130 0.00 0.00 0.00 3.07
23 24 4.019950 CCTGGATTTTGCCCTTTTTCTGAT 60.020 41.667 0.00 0.00 0.00 2.90
24 25 3.324556 CCTGGATTTTGCCCTTTTTCTGA 59.675 43.478 0.00 0.00 0.00 3.27
25 26 3.324556 TCCTGGATTTTGCCCTTTTTCTG 59.675 43.478 0.00 0.00 0.00 3.02
26 27 3.586429 TCCTGGATTTTGCCCTTTTTCT 58.414 40.909 0.00 0.00 0.00 2.52
27 28 4.256110 CATCCTGGATTTTGCCCTTTTTC 58.744 43.478 6.42 0.00 0.00 2.29
28 29 3.652387 ACATCCTGGATTTTGCCCTTTTT 59.348 39.130 6.42 0.00 0.00 1.94
29 30 3.250617 ACATCCTGGATTTTGCCCTTTT 58.749 40.909 6.42 0.00 0.00 2.27
30 31 2.906568 ACATCCTGGATTTTGCCCTTT 58.093 42.857 6.42 0.00 0.00 3.11
31 32 2.629017 ACATCCTGGATTTTGCCCTT 57.371 45.000 6.42 0.00 0.00 3.95
32 33 2.629017 AACATCCTGGATTTTGCCCT 57.371 45.000 6.42 0.00 0.00 5.19
33 34 3.096092 TGTAACATCCTGGATTTTGCCC 58.904 45.455 16.43 6.57 0.00 5.36
34 35 3.763897 ACTGTAACATCCTGGATTTTGCC 59.236 43.478 16.43 8.61 0.00 4.52
35 36 5.449177 GCTACTGTAACATCCTGGATTTTGC 60.449 44.000 16.43 15.39 0.00 3.68
36 37 5.220662 CGCTACTGTAACATCCTGGATTTTG 60.221 44.000 16.43 6.31 0.00 2.44
37 38 4.876107 CGCTACTGTAACATCCTGGATTTT 59.124 41.667 6.42 9.93 0.00 1.82
38 39 4.161565 TCGCTACTGTAACATCCTGGATTT 59.838 41.667 6.42 7.74 0.00 2.17
39 40 3.704566 TCGCTACTGTAACATCCTGGATT 59.295 43.478 6.42 0.00 0.00 3.01
40 41 3.068307 GTCGCTACTGTAACATCCTGGAT 59.932 47.826 2.57 2.57 0.00 3.41
41 42 2.426024 GTCGCTACTGTAACATCCTGGA 59.574 50.000 0.00 0.00 0.00 3.86
42 43 2.794981 CGTCGCTACTGTAACATCCTGG 60.795 54.545 0.00 0.00 0.00 4.45
43 44 2.451132 CGTCGCTACTGTAACATCCTG 58.549 52.381 0.00 0.00 0.00 3.86
44 45 1.202268 GCGTCGCTACTGTAACATCCT 60.202 52.381 10.68 0.00 0.00 3.24
45 46 1.197910 GCGTCGCTACTGTAACATCC 58.802 55.000 10.68 0.00 0.00 3.51
46 47 1.904144 TGCGTCGCTACTGTAACATC 58.096 50.000 19.50 0.00 0.00 3.06
47 48 2.159296 TCATGCGTCGCTACTGTAACAT 60.159 45.455 19.50 0.00 0.00 2.71
48 49 1.200484 TCATGCGTCGCTACTGTAACA 59.800 47.619 19.50 0.00 0.00 2.41
49 50 1.846782 CTCATGCGTCGCTACTGTAAC 59.153 52.381 19.50 0.00 0.00 2.50
50 51 1.741145 TCTCATGCGTCGCTACTGTAA 59.259 47.619 19.50 0.00 0.00 2.41
51 52 1.330829 CTCTCATGCGTCGCTACTGTA 59.669 52.381 19.50 0.00 0.00 2.74
52 53 0.099613 CTCTCATGCGTCGCTACTGT 59.900 55.000 19.50 0.00 0.00 3.55
53 54 0.593518 CCTCTCATGCGTCGCTACTG 60.594 60.000 19.50 12.93 0.00 2.74
54 55 0.748367 TCCTCTCATGCGTCGCTACT 60.748 55.000 19.50 0.00 0.00 2.57
55 56 0.312416 ATCCTCTCATGCGTCGCTAC 59.688 55.000 19.50 0.00 0.00 3.58
56 57 0.593618 GATCCTCTCATGCGTCGCTA 59.406 55.000 19.50 5.27 0.00 4.26
57 58 1.361993 GATCCTCTCATGCGTCGCT 59.638 57.895 19.50 0.71 0.00 4.93
58 59 2.013483 CGATCCTCTCATGCGTCGC 61.013 63.158 11.10 11.10 0.00 5.19
59 60 1.371022 CCGATCCTCTCATGCGTCG 60.371 63.158 0.00 0.00 0.00 5.12
60 61 0.600557 ATCCGATCCTCTCATGCGTC 59.399 55.000 0.00 0.00 0.00 5.19
61 62 0.600557 GATCCGATCCTCTCATGCGT 59.399 55.000 0.00 0.00 0.00 5.24
62 63 0.600057 TGATCCGATCCTCTCATGCG 59.400 55.000 5.91 0.00 0.00 4.73
63 64 1.891811 TCTGATCCGATCCTCTCATGC 59.108 52.381 5.91 0.00 0.00 4.06
64 65 3.762823 TGATCTGATCCGATCCTCTCATG 59.237 47.826 20.48 0.00 39.20 3.07
65 66 3.763360 GTGATCTGATCCGATCCTCTCAT 59.237 47.826 20.48 0.00 39.20 2.90
66 67 3.153130 GTGATCTGATCCGATCCTCTCA 58.847 50.000 20.48 4.38 39.20 3.27
67 68 3.153130 TGTGATCTGATCCGATCCTCTC 58.847 50.000 20.48 11.12 39.20 3.20
68 69 3.156293 CTGTGATCTGATCCGATCCTCT 58.844 50.000 20.48 0.00 39.20 3.69
69 70 3.153130 TCTGTGATCTGATCCGATCCTC 58.847 50.000 20.48 14.89 39.20 3.71
70 71 3.156293 CTCTGTGATCTGATCCGATCCT 58.844 50.000 20.48 0.00 39.20 3.24
71 72 3.153130 TCTCTGTGATCTGATCCGATCC 58.847 50.000 20.48 13.73 39.20 3.36
72 73 3.191162 CCTCTCTGTGATCTGATCCGATC 59.809 52.174 17.56 17.56 40.13 3.69
73 74 3.156293 CCTCTCTGTGATCTGATCCGAT 58.844 50.000 14.71 0.00 0.00 4.18
74 75 2.580962 CCTCTCTGTGATCTGATCCGA 58.419 52.381 14.71 7.91 0.00 4.55
75 76 1.612950 CCCTCTCTGTGATCTGATCCG 59.387 57.143 14.71 4.16 0.00 4.18
76 77 2.364970 CACCCTCTCTGTGATCTGATCC 59.635 54.545 14.71 7.10 35.74 3.36
77 78 3.030291 ACACCCTCTCTGTGATCTGATC 58.970 50.000 10.72 10.72 37.18 2.92
78 79 2.765135 CACACCCTCTCTGTGATCTGAT 59.235 50.000 0.00 0.00 41.43 2.90
79 80 2.174360 CACACCCTCTCTGTGATCTGA 58.826 52.381 0.00 0.00 41.43 3.27
80 81 1.405256 GCACACCCTCTCTGTGATCTG 60.405 57.143 2.73 0.00 41.43 2.90
81 82 0.901124 GCACACCCTCTCTGTGATCT 59.099 55.000 2.73 0.00 41.43 2.75
82 83 0.610174 TGCACACCCTCTCTGTGATC 59.390 55.000 2.73 0.00 41.43 2.92
83 84 0.612229 CTGCACACCCTCTCTGTGAT 59.388 55.000 2.73 0.00 41.43 3.06
84 85 0.469892 TCTGCACACCCTCTCTGTGA 60.470 55.000 2.73 0.00 41.43 3.58
85 86 0.037512 CTCTGCACACCCTCTCTGTG 60.038 60.000 0.00 0.00 41.76 3.66
86 87 0.178950 TCTCTGCACACCCTCTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
87 88 0.531657 CTCTCTGCACACCCTCTCTG 59.468 60.000 0.00 0.00 0.00 3.35
88 89 0.614415 CCTCTCTGCACACCCTCTCT 60.614 60.000 0.00 0.00 0.00 3.10
89 90 0.613292 TCCTCTCTGCACACCCTCTC 60.613 60.000 0.00 0.00 0.00 3.20
90 91 0.614415 CTCCTCTCTGCACACCCTCT 60.614 60.000 0.00 0.00 0.00 3.69
91 92 0.613292 TCTCCTCTCTGCACACCCTC 60.613 60.000 0.00 0.00 0.00 4.30
92 93 0.614415 CTCTCCTCTCTGCACACCCT 60.614 60.000 0.00 0.00 0.00 4.34
93 94 1.612395 CCTCTCCTCTCTGCACACCC 61.612 65.000 0.00 0.00 0.00 4.61
94 95 0.613292 TCCTCTCCTCTCTGCACACC 60.613 60.000 0.00 0.00 0.00 4.16
95 96 1.484038 ATCCTCTCCTCTCTGCACAC 58.516 55.000 0.00 0.00 0.00 3.82
96 97 3.229293 CATATCCTCTCCTCTCTGCACA 58.771 50.000 0.00 0.00 0.00 4.57
97 98 2.562298 CCATATCCTCTCCTCTCTGCAC 59.438 54.545 0.00 0.00 0.00 4.57
98 99 2.492381 CCCATATCCTCTCCTCTCTGCA 60.492 54.545 0.00 0.00 0.00 4.41
99 100 2.178580 CCCATATCCTCTCCTCTCTGC 58.821 57.143 0.00 0.00 0.00 4.26
100 101 2.111613 ACCCCATATCCTCTCCTCTCTG 59.888 54.545 0.00 0.00 0.00 3.35
101 102 2.448708 ACCCCATATCCTCTCCTCTCT 58.551 52.381 0.00 0.00 0.00 3.10
102 103 2.903135 CAACCCCATATCCTCTCCTCTC 59.097 54.545 0.00 0.00 0.00 3.20
103 104 2.428484 CCAACCCCATATCCTCTCCTCT 60.428 54.545 0.00 0.00 0.00 3.69
104 105 1.981495 CCAACCCCATATCCTCTCCTC 59.019 57.143 0.00 0.00 0.00 3.71
105 106 2.047742 GCCAACCCCATATCCTCTCCT 61.048 57.143 0.00 0.00 0.00 3.69
106 107 0.402121 GCCAACCCCATATCCTCTCC 59.598 60.000 0.00 0.00 0.00 3.71
107 108 0.402121 GGCCAACCCCATATCCTCTC 59.598 60.000 0.00 0.00 0.00 3.20
108 109 1.418908 CGGCCAACCCCATATCCTCT 61.419 60.000 2.24 0.00 0.00 3.69
109 110 1.073199 CGGCCAACCCCATATCCTC 59.927 63.158 2.24 0.00 0.00 3.71
110 111 1.385347 TCGGCCAACCCCATATCCT 60.385 57.895 2.24 0.00 0.00 3.24
111 112 1.228154 GTCGGCCAACCCCATATCC 60.228 63.158 2.24 0.00 0.00 2.59
112 113 1.597027 CGTCGGCCAACCCCATATC 60.597 63.158 2.24 0.00 0.00 1.63
113 114 2.508928 CGTCGGCCAACCCCATAT 59.491 61.111 2.24 0.00 0.00 1.78
114 115 4.476752 GCGTCGGCCAACCCCATA 62.477 66.667 2.24 0.00 0.00 2.74
119 120 2.975799 TTCTTGCGTCGGCCAACC 60.976 61.111 2.24 0.00 38.85 3.77
120 121 2.251371 GTTCTTGCGTCGGCCAAC 59.749 61.111 2.24 0.00 38.85 3.77
121 122 2.975799 GGTTCTTGCGTCGGCCAA 60.976 61.111 2.24 0.00 38.85 4.52
123 124 4.699522 AGGGTTCTTGCGTCGGCC 62.700 66.667 0.00 0.00 38.85 6.13
124 125 3.423154 CAGGGTTCTTGCGTCGGC 61.423 66.667 0.00 0.00 40.52 5.54
125 126 3.423154 GCAGGGTTCTTGCGTCGG 61.423 66.667 0.00 0.00 0.00 4.79
126 127 0.669318 TAAGCAGGGTTCTTGCGTCG 60.669 55.000 0.00 0.00 0.00 5.12
127 128 1.519408 TTAAGCAGGGTTCTTGCGTC 58.481 50.000 0.00 0.00 0.00 5.19
128 129 1.975660 TTTAAGCAGGGTTCTTGCGT 58.024 45.000 0.00 0.00 0.00 5.24
129 130 3.575965 ATTTTAAGCAGGGTTCTTGCG 57.424 42.857 0.00 0.00 0.00 4.85
130 131 4.424626 GCTATTTTAAGCAGGGTTCTTGC 58.575 43.478 0.00 0.00 42.30 4.01
131 132 4.156008 ACGCTATTTTAAGCAGGGTTCTTG 59.844 41.667 0.00 0.00 42.91 3.02
132 133 4.156008 CACGCTATTTTAAGCAGGGTTCTT 59.844 41.667 0.00 0.00 42.91 2.52
133 134 3.689649 CACGCTATTTTAAGCAGGGTTCT 59.310 43.478 0.00 0.00 42.91 3.01
134 135 3.687698 TCACGCTATTTTAAGCAGGGTTC 59.312 43.478 0.00 0.00 42.91 3.62
135 136 3.681593 TCACGCTATTTTAAGCAGGGTT 58.318 40.909 0.00 0.00 42.91 4.11
136 137 3.270877 CTCACGCTATTTTAAGCAGGGT 58.729 45.455 0.00 0.00 42.91 4.34
137 138 2.032178 GCTCACGCTATTTTAAGCAGGG 59.968 50.000 0.00 0.00 42.91 4.45
138 139 2.677836 TGCTCACGCTATTTTAAGCAGG 59.322 45.455 0.00 0.00 42.91 4.85
140 141 2.677836 CCTGCTCACGCTATTTTAAGCA 59.322 45.455 0.00 0.00 42.91 3.91
141 142 2.539750 GCCTGCTCACGCTATTTTAAGC 60.540 50.000 0.00 0.00 39.21 3.09
142 143 2.285834 CGCCTGCTCACGCTATTTTAAG 60.286 50.000 0.00 0.00 36.97 1.85
143 144 1.663643 CGCCTGCTCACGCTATTTTAA 59.336 47.619 0.00 0.00 36.97 1.52
144 145 1.286501 CGCCTGCTCACGCTATTTTA 58.713 50.000 0.00 0.00 36.97 1.52
145 146 1.369091 CCGCCTGCTCACGCTATTTT 61.369 55.000 0.00 0.00 36.97 1.82
146 147 1.815421 CCGCCTGCTCACGCTATTT 60.815 57.895 0.00 0.00 36.97 1.40
147 148 2.202932 CCGCCTGCTCACGCTATT 60.203 61.111 0.00 0.00 36.97 1.73
148 149 3.147595 TCCGCCTGCTCACGCTAT 61.148 61.111 0.00 0.00 36.97 2.97
149 150 4.129737 GTCCGCCTGCTCACGCTA 62.130 66.667 0.00 0.00 36.97 4.26
152 153 4.056125 TCTGTCCGCCTGCTCACG 62.056 66.667 0.00 0.00 0.00 4.35
153 154 2.433318 GTCTGTCCGCCTGCTCAC 60.433 66.667 0.00 0.00 0.00 3.51
154 155 4.056125 CGTCTGTCCGCCTGCTCA 62.056 66.667 0.00 0.00 0.00 4.26
163 164 1.741770 ATTGAAGCGGCGTCTGTCC 60.742 57.895 16.51 0.90 0.00 4.02
164 165 1.421485 CATTGAAGCGGCGTCTGTC 59.579 57.895 16.51 7.47 0.00 3.51
165 166 2.680913 GCATTGAAGCGGCGTCTGT 61.681 57.895 16.51 3.03 0.00 3.41
166 167 2.099062 GCATTGAAGCGGCGTCTG 59.901 61.111 16.51 8.81 0.00 3.51
174 175 2.023320 GCTACGCCGCATTGAAGC 59.977 61.111 0.00 0.00 0.00 3.86
175 176 2.321060 CGCTACGCCGCATTGAAG 59.679 61.111 0.00 0.00 0.00 3.02
176 177 3.192230 CCGCTACGCCGCATTGAA 61.192 61.111 0.00 0.00 0.00 2.69
177 178 4.444838 ACCGCTACGCCGCATTGA 62.445 61.111 0.00 0.00 0.00 2.57
178 179 3.925238 GACCGCTACGCCGCATTG 61.925 66.667 0.00 0.00 0.00 2.82
183 184 2.961526 CTACTTCGACCGCTACGCCG 62.962 65.000 0.00 0.00 0.00 6.46
184 185 1.298190 CTACTTCGACCGCTACGCC 60.298 63.158 0.00 0.00 0.00 5.68
185 186 1.938329 GCTACTTCGACCGCTACGC 60.938 63.158 0.00 0.00 0.00 4.42
186 187 1.298190 GGCTACTTCGACCGCTACG 60.298 63.158 0.00 0.00 0.00 3.51
187 188 0.455005 AAGGCTACTTCGACCGCTAC 59.545 55.000 0.00 0.00 28.54 3.58
188 189 0.737219 GAAGGCTACTTCGACCGCTA 59.263 55.000 0.00 0.00 43.25 4.26
189 190 1.511768 GAAGGCTACTTCGACCGCT 59.488 57.895 0.00 0.00 43.25 5.52
190 191 4.089983 GAAGGCTACTTCGACCGC 57.910 61.111 0.00 0.00 43.25 5.68
196 197 2.289694 TGGCAACTGAGAAGGCTACTTC 60.290 50.000 0.00 0.00 45.49 3.01
197 198 1.699634 TGGCAACTGAGAAGGCTACTT 59.300 47.619 0.00 0.00 37.22 2.24
198 199 1.002544 GTGGCAACTGAGAAGGCTACT 59.997 52.381 0.00 0.00 35.24 2.57
199 200 1.002544 AGTGGCAACTGAGAAGGCTAC 59.997 52.381 0.00 0.00 37.92 3.58
200 201 1.352083 AGTGGCAACTGAGAAGGCTA 58.648 50.000 0.00 0.00 34.48 3.93
201 202 2.149530 AGTGGCAACTGAGAAGGCT 58.850 52.632 0.00 0.00 34.48 4.58
202 203 4.809070 AGTGGCAACTGAGAAGGC 57.191 55.556 0.00 0.00 34.48 4.35
228 229 3.406361 CGATGCGGGCGTATCAGC 61.406 66.667 0.00 0.00 37.12 4.26
229 230 2.016704 GTCGATGCGGGCGTATCAG 61.017 63.158 0.00 0.00 37.12 2.90
230 231 2.027024 GTCGATGCGGGCGTATCA 59.973 61.111 0.00 0.00 37.12 2.15
231 232 3.097728 CGTCGATGCGGGCGTATC 61.098 66.667 0.00 0.00 34.58 2.24
232 233 3.538028 CTCGTCGATGCGGGCGTAT 62.538 63.158 0.00 0.00 0.00 3.06
233 234 4.246206 CTCGTCGATGCGGGCGTA 62.246 66.667 0.00 0.00 0.00 4.42
237 238 3.490793 ATCTGCTCGTCGATGCGGG 62.491 63.158 18.93 4.28 36.33 6.13
238 239 2.013483 GATCTGCTCGTCGATGCGG 61.013 63.158 15.26 15.26 36.94 5.69
239 240 0.996229 GAGATCTGCTCGTCGATGCG 60.996 60.000 0.00 0.00 33.17 4.73
240 241 2.794941 GAGATCTGCTCGTCGATGC 58.205 57.895 0.00 2.52 33.17 3.91
261 262 1.433064 CACCAAACGCAGCACAACT 59.567 52.632 0.00 0.00 0.00 3.16
262 263 2.230264 GCACCAAACGCAGCACAAC 61.230 57.895 0.00 0.00 0.00 3.32
263 264 2.103934 GCACCAAACGCAGCACAA 59.896 55.556 0.00 0.00 0.00 3.33
264 265 4.249020 CGCACCAAACGCAGCACA 62.249 61.111 0.00 0.00 0.00 4.57
265 266 3.947841 TCGCACCAAACGCAGCAC 61.948 61.111 0.00 0.00 0.00 4.40
266 267 3.947841 GTCGCACCAAACGCAGCA 61.948 61.111 0.00 0.00 0.00 4.41
267 268 3.462333 TTGTCGCACCAAACGCAGC 62.462 57.895 0.00 0.00 0.00 5.25
268 269 1.369209 CTTGTCGCACCAAACGCAG 60.369 57.895 0.00 0.00 0.00 5.18
269 270 2.042520 GACTTGTCGCACCAAACGCA 62.043 55.000 0.00 0.00 0.00 5.24
270 271 1.368850 GACTTGTCGCACCAAACGC 60.369 57.895 0.00 0.00 0.00 4.84
271 272 1.278637 GGACTTGTCGCACCAAACG 59.721 57.895 0.00 0.00 0.00 3.60
272 273 1.278637 CGGACTTGTCGCACCAAAC 59.721 57.895 0.00 0.00 0.00 2.93
273 274 1.153329 ACGGACTTGTCGCACCAAA 60.153 52.632 0.00 0.00 0.00 3.28
274 275 1.885388 CACGGACTTGTCGCACCAA 60.885 57.895 0.00 0.00 0.00 3.67
275 276 2.279851 CACGGACTTGTCGCACCA 60.280 61.111 0.00 0.00 0.00 4.17
276 277 0.949105 ATTCACGGACTTGTCGCACC 60.949 55.000 0.00 0.00 0.00 5.01
277 278 0.163788 CATTCACGGACTTGTCGCAC 59.836 55.000 0.00 0.00 0.00 5.34
278 279 0.032815 TCATTCACGGACTTGTCGCA 59.967 50.000 0.00 0.00 0.00 5.10
279 280 0.716108 CTCATTCACGGACTTGTCGC 59.284 55.000 0.00 0.00 0.00 5.19
280 281 1.067846 TCCTCATTCACGGACTTGTCG 60.068 52.381 0.00 0.00 0.00 4.35
281 282 2.743636 TCCTCATTCACGGACTTGTC 57.256 50.000 0.00 0.00 0.00 3.18
282 283 2.303022 ACATCCTCATTCACGGACTTGT 59.697 45.455 0.00 0.00 30.90 3.16
283 284 2.674852 CACATCCTCATTCACGGACTTG 59.325 50.000 0.00 0.00 30.90 3.16
284 285 2.936993 GCACATCCTCATTCACGGACTT 60.937 50.000 0.00 0.00 30.90 3.01
285 286 1.406069 GCACATCCTCATTCACGGACT 60.406 52.381 0.00 0.00 30.90 3.85
286 287 1.009829 GCACATCCTCATTCACGGAC 58.990 55.000 0.00 0.00 30.90 4.79
287 288 0.107703 GGCACATCCTCATTCACGGA 60.108 55.000 0.00 0.00 0.00 4.69
288 289 0.107508 AGGCACATCCTCATTCACGG 60.108 55.000 0.00 0.00 43.20 4.94
289 290 1.399440 CAAGGCACATCCTCATTCACG 59.601 52.381 0.00 0.00 46.94 4.35
290 291 1.747355 CCAAGGCACATCCTCATTCAC 59.253 52.381 0.00 0.00 46.94 3.18
291 292 1.956636 GCCAAGGCACATCCTCATTCA 60.957 52.381 6.14 0.00 46.94 2.57
292 293 0.743097 GCCAAGGCACATCCTCATTC 59.257 55.000 6.14 0.00 46.94 2.67
293 294 1.033746 CGCCAAGGCACATCCTCATT 61.034 55.000 12.19 0.00 46.94 2.57
294 295 1.452651 CGCCAAGGCACATCCTCAT 60.453 57.895 12.19 0.00 46.94 2.90
295 296 1.913951 ATCGCCAAGGCACATCCTCA 61.914 55.000 12.19 0.00 46.94 3.86
296 297 1.153086 ATCGCCAAGGCACATCCTC 60.153 57.895 12.19 0.00 46.94 3.71
298 299 2.537560 CGATCGCCAAGGCACATCC 61.538 63.158 12.19 0.00 42.06 3.51
299 300 3.017323 CGATCGCCAAGGCACATC 58.983 61.111 12.19 10.38 42.06 3.06
300 301 3.204827 GCGATCGCCAAGGCACAT 61.205 61.111 29.48 1.95 42.06 3.21
303 304 4.529219 ATCGCGATCGCCAAGGCA 62.529 61.111 32.63 11.25 42.06 4.75
304 305 4.005472 CATCGCGATCGCCAAGGC 62.005 66.667 32.63 6.22 37.98 4.35
305 306 2.586079 ACATCGCGATCGCCAAGG 60.586 61.111 32.63 24.11 37.98 3.61
306 307 2.920964 CGACATCGCGATCGCCAAG 61.921 63.158 32.63 20.88 37.98 3.61
307 308 2.954346 CGACATCGCGATCGCCAA 60.954 61.111 32.63 21.94 37.98 4.52
328 329 3.468140 GTAGTGGAGGACGCCCCC 61.468 72.222 0.00 0.00 34.66 5.40
329 330 2.578586 TAGGTAGTGGAGGACGCCCC 62.579 65.000 0.00 0.00 0.00 5.80
330 331 1.076485 TAGGTAGTGGAGGACGCCC 60.076 63.158 0.00 0.00 0.00 6.13
331 332 1.736365 GCTAGGTAGTGGAGGACGCC 61.736 65.000 0.00 0.00 0.00 5.68
332 333 0.752376 AGCTAGGTAGTGGAGGACGC 60.752 60.000 0.00 0.00 0.00 5.19
333 334 1.025812 CAGCTAGGTAGTGGAGGACG 58.974 60.000 0.00 0.00 0.00 4.79
334 335 2.303175 CTCAGCTAGGTAGTGGAGGAC 58.697 57.143 0.00 0.00 0.00 3.85
335 336 1.923850 ACTCAGCTAGGTAGTGGAGGA 59.076 52.381 10.64 0.00 33.14 3.71
336 337 2.028130 CACTCAGCTAGGTAGTGGAGG 58.972 57.143 16.99 3.79 37.55 4.30
337 338 1.407258 GCACTCAGCTAGGTAGTGGAG 59.593 57.143 21.99 15.28 40.76 3.86
338 339 1.475403 GCACTCAGCTAGGTAGTGGA 58.525 55.000 21.99 6.60 40.76 4.02
339 340 0.101399 CGCACTCAGCTAGGTAGTGG 59.899 60.000 21.99 13.88 40.76 4.00
340 341 0.101399 CCGCACTCAGCTAGGTAGTG 59.899 60.000 18.97 18.97 42.80 2.74
341 342 0.323542 ACCGCACTCAGCTAGGTAGT 60.324 55.000 0.00 0.00 42.61 2.73
342 343 0.101399 CACCGCACTCAGCTAGGTAG 59.899 60.000 0.00 0.00 42.61 3.18
343 344 1.320344 CCACCGCACTCAGCTAGGTA 61.320 60.000 0.00 0.00 42.61 3.08
344 345 2.650116 CCACCGCACTCAGCTAGGT 61.650 63.158 0.00 0.00 42.61 3.08
345 346 2.185350 CCACCGCACTCAGCTAGG 59.815 66.667 0.00 0.00 42.61 3.02
346 347 1.446792 CACCACCGCACTCAGCTAG 60.447 63.158 0.00 0.00 42.61 3.42
347 348 2.656646 CACCACCGCACTCAGCTA 59.343 61.111 0.00 0.00 42.61 3.32
348 349 4.320456 CCACCACCGCACTCAGCT 62.320 66.667 0.00 0.00 42.61 4.24
350 351 4.320456 AGCCACCACCGCACTCAG 62.320 66.667 0.00 0.00 0.00 3.35
351 352 4.314440 GAGCCACCACCGCACTCA 62.314 66.667 0.00 0.00 0.00 3.41
366 367 4.538283 ATGCTCCGCGACGACGAG 62.538 66.667 8.23 7.89 42.66 4.18
367 368 4.531912 GATGCTCCGCGACGACGA 62.532 66.667 8.23 0.00 42.66 4.20
388 389 4.096003 TTGCCCTCTACTGCGCCC 62.096 66.667 4.18 0.00 0.00 6.13
389 390 2.820037 GTTGCCCTCTACTGCGCC 60.820 66.667 4.18 0.00 0.00 6.53
390 391 3.188786 CGTTGCCCTCTACTGCGC 61.189 66.667 0.00 0.00 0.00 6.09
391 392 2.509336 CCGTTGCCCTCTACTGCG 60.509 66.667 0.00 0.00 0.00 5.18
392 393 1.153549 CTCCGTTGCCCTCTACTGC 60.154 63.158 0.00 0.00 0.00 4.40
393 394 1.517832 CCTCCGTTGCCCTCTACTG 59.482 63.158 0.00 0.00 0.00 2.74
394 395 1.686110 CCCTCCGTTGCCCTCTACT 60.686 63.158 0.00 0.00 0.00 2.57
395 396 2.732619 CCCCTCCGTTGCCCTCTAC 61.733 68.421 0.00 0.00 0.00 2.59
396 397 2.365105 CCCCTCCGTTGCCCTCTA 60.365 66.667 0.00 0.00 0.00 2.43
432 433 2.717044 CCGGTGACCTCGTATGCCA 61.717 63.158 0.00 0.00 0.00 4.92
535 536 5.374921 ACCCATGCAAATGACAAAAATTCA 58.625 33.333 0.00 0.00 0.00 2.57
536 537 5.945466 ACCCATGCAAATGACAAAAATTC 57.055 34.783 0.00 0.00 0.00 2.17
538 539 6.294473 TGTAACCCATGCAAATGACAAAAAT 58.706 32.000 0.00 0.00 0.00 1.82
540 541 5.282055 TGTAACCCATGCAAATGACAAAA 57.718 34.783 0.00 0.00 0.00 2.44
590 591 8.649973 TCCGCAATACAAACAAAATTTAAACT 57.350 26.923 0.00 0.00 0.00 2.66
603 604 5.123186 CCTACACTTTCATCCGCAATACAAA 59.877 40.000 0.00 0.00 0.00 2.83
616 617 0.107831 ACGCTTGCCCTACACTTTCA 59.892 50.000 0.00 0.00 0.00 2.69
639 640 5.868043 ACAAGTTACGTTAGGGCATAAAC 57.132 39.130 0.00 0.00 0.00 2.01
641 642 6.284891 AGTACAAGTTACGTTAGGGCATAA 57.715 37.500 0.00 0.00 0.00 1.90
642 643 5.920193 AGTACAAGTTACGTTAGGGCATA 57.080 39.130 0.00 0.00 0.00 3.14
663 728 8.131455 ACGACAAATACATGTGATAAAGCTAG 57.869 34.615 9.11 0.00 32.57 3.42
664 729 8.387354 CAACGACAAATACATGTGATAAAGCTA 58.613 33.333 9.11 0.00 32.57 3.32
665 730 6.985188 ACGACAAATACATGTGATAAAGCT 57.015 33.333 9.11 0.00 32.57 3.74
676 741 7.974501 TGTTACAAAAACCAACGACAAATACAT 59.025 29.630 0.00 0.00 0.00 2.29
678 743 7.513969 GCTGTTACAAAAACCAACGACAAATAC 60.514 37.037 0.00 0.00 0.00 1.89
716 960 7.148222 TGGAAACTGAACAAATGTAAGAACGAA 60.148 33.333 0.00 0.00 0.00 3.85
717 961 6.316640 TGGAAACTGAACAAATGTAAGAACGA 59.683 34.615 0.00 0.00 0.00 3.85
719 963 8.871686 ATTGGAAACTGAACAAATGTAAGAAC 57.128 30.769 3.87 0.00 0.00 3.01
748 997 5.446143 TTGTTAAACAAACGATCTGCCAT 57.554 34.783 0.00 0.00 41.30 4.40
771 1020 8.859236 ATAATTGCTGTATAGTACCTCGACTA 57.141 34.615 0.00 0.00 36.38 2.59
798 1047 0.859232 TCGAAGAAGCGTGAACAAGC 59.141 50.000 4.72 4.72 36.04 4.01
800 1049 3.311322 ACATTTCGAAGAAGCGTGAACAA 59.689 39.130 0.00 0.00 45.90 2.83
850 1099 4.924019 CAACGTTGCCGGGATCTA 57.076 55.556 16.51 0.00 38.78 1.98
963 1212 1.621317 TCAAGACTGTAATGGCGGACA 59.379 47.619 0.00 0.00 0.00 4.02
978 1227 1.758936 TATCGCGGAGAAGGTCAAGA 58.241 50.000 6.13 0.00 0.00 3.02
982 1231 2.924290 GCATAATATCGCGGAGAAGGTC 59.076 50.000 6.13 0.00 0.00 3.85
1000 1249 4.778143 GGAACGGTGAGCGGGCAT 62.778 66.667 9.43 0.00 0.00 4.40
1013 1262 2.367107 GGAGGGGGAGGAGGGAAC 60.367 72.222 0.00 0.00 0.00 3.62
1204 1453 0.402121 GGGTGGAGCAAGAAGAGGTT 59.598 55.000 0.00 0.00 0.00 3.50
1522 1771 4.468007 CCGGTTTTCTCGGTTGGT 57.532 55.556 0.00 0.00 42.33 3.67
1566 1815 3.916544 CCATAGCTGCGCTCCGGA 61.917 66.667 9.73 2.93 40.44 5.14
1651 1900 3.616721 ACCCAGCAGTTCGTCGCT 61.617 61.111 0.00 0.00 39.66 4.93
2142 2391 2.760385 CGGTGTCCCTCTCCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
2296 2545 3.069980 ATCCACGCTCCTCGCACTC 62.070 63.158 0.00 0.00 43.23 3.51
2328 2577 4.880537 CCCTGCACGAGCTAGCCG 62.881 72.222 19.72 19.72 42.74 5.52
2369 2618 3.965347 TCTAGTATTAAGCCACCTGGACC 59.035 47.826 0.00 0.00 37.39 4.46
2400 2649 4.460382 CACTGCTACATCTCCCAAAACAAT 59.540 41.667 0.00 0.00 0.00 2.71
2478 2727 1.001974 TGTGCACTAGTACCAAGCTGG 59.998 52.381 19.41 0.00 45.02 4.85
2479 2728 2.455674 TGTGCACTAGTACCAAGCTG 57.544 50.000 19.41 0.00 0.00 4.24
2480 2729 3.139077 GTTTGTGCACTAGTACCAAGCT 58.861 45.455 19.41 0.00 0.00 3.74
2481 2730 2.096417 CGTTTGTGCACTAGTACCAAGC 60.096 50.000 19.41 3.15 0.00 4.01
2482 2731 3.386486 TCGTTTGTGCACTAGTACCAAG 58.614 45.455 19.41 0.00 0.00 3.61
2483 2732 3.455990 TCGTTTGTGCACTAGTACCAA 57.544 42.857 19.41 0.00 0.00 3.67
2484 2733 3.455990 TTCGTTTGTGCACTAGTACCA 57.544 42.857 19.41 0.00 0.00 3.25
2485 2734 4.032558 GCTATTCGTTTGTGCACTAGTACC 59.967 45.833 19.41 0.00 0.00 3.34
2486 2735 4.032558 GGCTATTCGTTTGTGCACTAGTAC 59.967 45.833 19.41 5.73 0.00 2.73
2487 2736 4.178540 GGCTATTCGTTTGTGCACTAGTA 58.821 43.478 19.41 0.00 0.00 1.82
2488 2737 3.000727 GGCTATTCGTTTGTGCACTAGT 58.999 45.455 19.41 0.00 0.00 2.57
2489 2738 3.000041 TGGCTATTCGTTTGTGCACTAG 59.000 45.455 19.41 10.29 0.00 2.57
2494 2743 1.804151 TGACTGGCTATTCGTTTGTGC 59.196 47.619 0.00 0.00 0.00 4.57
2512 2761 2.656646 CACCTACTGCGCCACTGA 59.343 61.111 4.18 0.00 0.00 3.41
2574 2826 2.673976 TTCCGTTTTCGCAGTAAAGC 57.326 45.000 0.00 0.00 42.58 3.51
2580 2832 2.307049 GTGATGTTTCCGTTTTCGCAG 58.693 47.619 0.00 0.00 42.58 5.18
2593 2845 9.801873 CCGAATAATGAAAATAAAGGTGATGTT 57.198 29.630 0.00 0.00 0.00 2.71
2595 2847 7.382218 GGCCGAATAATGAAAATAAAGGTGATG 59.618 37.037 0.00 0.00 0.00 3.07
2596 2848 7.069331 TGGCCGAATAATGAAAATAAAGGTGAT 59.931 33.333 0.00 0.00 0.00 3.06
2597 2849 6.378564 TGGCCGAATAATGAAAATAAAGGTGA 59.621 34.615 0.00 0.00 0.00 4.02
2598 2850 6.475402 GTGGCCGAATAATGAAAATAAAGGTG 59.525 38.462 0.00 0.00 0.00 4.00
2599 2851 6.569780 GTGGCCGAATAATGAAAATAAAGGT 58.430 36.000 0.00 0.00 0.00 3.50
2600 2852 5.685511 CGTGGCCGAATAATGAAAATAAAGG 59.314 40.000 0.00 0.00 35.63 3.11
2602 2854 6.127980 TGACGTGGCCGAATAATGAAAATAAA 60.128 34.615 0.00 0.00 37.88 1.40
2603 2855 5.354513 TGACGTGGCCGAATAATGAAAATAA 59.645 36.000 0.00 0.00 37.88 1.40
2634 3242 3.134401 CAGTCCTGTGTAGCTGCTG 57.866 57.895 13.43 0.00 0.00 4.41
2642 3250 1.227263 GTGTCGTGCAGTCCTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
2643 3251 1.217585 CTGTGTCGTGCAGTCCTGTG 61.218 60.000 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.