Multiple sequence alignment - TraesCS7D01G216300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G216300 chr7D 100.000 4465 0 0 1 4465 176157905 176162369 0.000000e+00 8246.0
1 TraesCS7D01G216300 chr7D 76.923 520 77 35 16 520 638355512 638355021 5.730000e-64 255.0
2 TraesCS7D01G216300 chr7D 84.524 84 9 4 2931 3012 219714408 219714489 3.700000e-11 80.5
3 TraesCS7D01G216300 chr7D 88.136 59 5 2 2931 2988 234345953 234346010 8.010000e-08 69.4
4 TraesCS7D01G216300 chr7B 94.644 2726 105 18 896 3620 141958864 141956179 0.000000e+00 4187.0
5 TraesCS7D01G216300 chr7B 88.430 121 1 6 770 879 141958967 141958849 2.800000e-27 134.0
6 TraesCS7D01G216300 chr7B 78.404 213 20 7 125 312 558645368 558645579 1.010000e-21 115.0
7 TraesCS7D01G216300 chr7B 80.000 135 20 7 381 511 34706823 34706954 4.760000e-15 93.5
8 TraesCS7D01G216300 chr7B 84.146 82 12 1 430 511 34691482 34691402 1.330000e-10 78.7
9 TraesCS7D01G216300 chr7B 88.889 63 5 2 2467 2528 180041032 180040971 4.790000e-10 76.8
10 TraesCS7D01G216300 chr7B 83.333 84 10 4 2931 3012 180029612 180029531 1.720000e-09 75.0
11 TraesCS7D01G216300 chr7A 94.985 2612 115 10 896 3501 178618119 178615518 0.000000e+00 4084.0
12 TraesCS7D01G216300 chr7A 79.296 710 108 23 3787 4465 520871224 520870523 1.130000e-125 460.0
13 TraesCS7D01G216300 chr7A 95.455 132 5 1 1 132 544966726 544966596 4.530000e-50 209.0
14 TraesCS7D01G216300 chr7A 89.286 168 15 2 286 452 158472969 158473134 1.630000e-49 207.0
15 TraesCS7D01G216300 chr7A 90.323 124 8 4 181 302 544899090 544898969 4.620000e-35 159.0
16 TraesCS7D01G216300 chr7A 94.231 52 3 0 773 824 178618192 178618141 3.700000e-11 80.5
17 TraesCS7D01G216300 chr7A 88.889 63 5 2 2464 2525 232024763 232024824 4.790000e-10 76.8
18 TraesCS7D01G216300 chr7A 88.889 63 5 2 2464 2525 232058306 232058367 4.790000e-10 76.8
19 TraesCS7D01G216300 chr7A 94.737 38 1 1 843 879 178618141 178618104 1.730000e-04 58.4
20 TraesCS7D01G216300 chr3D 86.000 500 47 19 16 511 545818123 545817643 8.560000e-142 514.0
21 TraesCS7D01G216300 chr3D 96.970 132 4 0 1 132 545818196 545818065 5.810000e-54 222.0
22 TraesCS7D01G216300 chr3D 88.806 134 13 2 180 312 451370283 451370415 3.570000e-36 163.0
23 TraesCS7D01G216300 chr3D 74.060 266 58 10 252 511 545351425 545351685 1.020000e-16 99.0
24 TraesCS7D01G216300 chr3D 88.136 59 5 2 2931 2988 456655327 456655384 8.010000e-08 69.4
25 TraesCS7D01G216300 chr1D 80.544 699 97 23 3802 4465 111062757 111063451 6.670000e-138 501.0
26 TraesCS7D01G216300 chr1D 77.096 489 101 9 2400 2881 48885719 48886203 5.690000e-69 272.0
27 TraesCS7D01G216300 chr1D 90.400 125 8 4 180 302 433029720 433029842 1.290000e-35 161.0
28 TraesCS7D01G216300 chr1D 80.435 138 21 5 381 514 2737203 2737068 2.840000e-17 100.0
29 TraesCS7D01G216300 chr1D 71.333 300 84 2 2595 2893 192570685 192570983 4.790000e-10 76.8
30 TraesCS7D01G216300 chr6B 80.990 626 88 16 3862 4456 674373889 674373264 6.760000e-128 468.0
31 TraesCS7D01G216300 chr6B 79.602 402 53 21 125 511 350832782 350832395 1.230000e-65 261.0
32 TraesCS7D01G216300 chr6B 85.165 182 13 6 562 733 653759596 653759419 1.650000e-39 174.0
33 TraesCS7D01G216300 chr6B 84.066 182 15 7 562 733 653849679 653849502 3.570000e-36 163.0
34 TraesCS7D01G216300 chr6B 84.049 163 16 2 565 717 653766844 653766682 1.000000e-31 148.0
35 TraesCS7D01G216300 chr5D 85.097 463 60 7 4011 4465 564217844 564217383 8.750000e-127 464.0
36 TraesCS7D01G216300 chr6D 78.964 637 96 23 3861 4465 421477424 421478054 2.500000e-107 399.0
37 TraesCS7D01G216300 chr6D 83.478 230 30 6 286 511 421637970 421638195 1.630000e-49 207.0
38 TraesCS7D01G216300 chr3B 78.998 619 93 21 3878 4465 53202484 53203096 5.420000e-104 388.0
39 TraesCS7D01G216300 chr3B 79.104 402 60 19 125 514 575300749 575300360 5.730000e-64 255.0
40 TraesCS7D01G216300 chr3B 95.455 132 6 0 1 132 575300915 575300784 1.260000e-50 211.0
41 TraesCS7D01G216300 chr3B 80.882 136 24 2 381 515 807159830 807159964 6.110000e-19 106.0
42 TraesCS7D01G216300 chr3B 81.481 135 18 7 381 511 807155843 807155712 2.200000e-18 104.0
43 TraesCS7D01G216300 chr5A 82.057 457 69 12 4012 4465 30765282 30765728 1.170000e-100 377.0
44 TraesCS7D01G216300 chr5A 82.018 456 69 12 4012 4464 32108832 32108387 4.220000e-100 375.0
45 TraesCS7D01G216300 chr5A 83.571 140 11 4 564 693 707993699 707993836 2.180000e-23 121.0
46 TraesCS7D01G216300 chr5A 83.871 93 15 0 419 511 706537501 706537593 6.150000e-14 89.8
47 TraesCS7D01G216300 chr4D 81.798 456 74 8 4018 4465 10635597 10636051 1.520000e-99 374.0
48 TraesCS7D01G216300 chr4D 80.000 185 17 5 565 734 405775582 405775761 7.850000e-23 119.0
49 TraesCS7D01G216300 chr2D 84.639 332 17 14 2 301 2288945 2288616 2.610000e-77 300.0
50 TraesCS7D01G216300 chr2D 71.869 487 120 14 2401 2877 472467854 472467375 1.690000e-24 124.0
51 TraesCS7D01G216300 chr1B 74.355 737 145 26 2400 3126 68945641 68946343 1.580000e-69 274.0
52 TraesCS7D01G216300 chr1B 95.455 132 6 0 1 132 538876009 538876140 1.260000e-50 211.0
53 TraesCS7D01G216300 chr1B 86.905 168 20 1 280 447 425615652 425615817 2.120000e-43 187.0
54 TraesCS7D01G216300 chr1B 94.845 97 3 2 125 220 538876176 538876271 2.780000e-32 150.0
55 TraesCS7D01G216300 chr1B 85.000 100 5 1 564 653 639238899 639238800 4.760000e-15 93.5
56 TraesCS7D01G216300 chr1A 77.096 489 101 9 2400 2881 48785393 48785877 5.690000e-69 272.0
57 TraesCS7D01G216300 chr6A 99.213 127 1 0 1 127 42848722 42848848 3.470000e-56 230.0
58 TraesCS7D01G216300 chr6A 99.213 127 1 0 1 127 42898602 42898728 3.470000e-56 230.0
59 TraesCS7D01G216300 chr6A 77.206 272 26 24 13 264 42848792 42849047 4.690000e-25 126.0
60 TraesCS7D01G216300 chr6A 77.206 272 26 24 13 264 42898672 42898927 4.690000e-25 126.0
61 TraesCS7D01G216300 chrUn 97.727 132 3 0 1 132 104896135 104896004 1.250000e-55 228.0
62 TraesCS7D01G216300 chrUn 88.889 63 5 2 2467 2528 270733808 270733747 4.790000e-10 76.8
63 TraesCS7D01G216300 chrUn 88.889 63 5 2 2464 2525 282197127 282197188 4.790000e-10 76.8
64 TraesCS7D01G216300 chrUn 93.478 46 3 0 2485 2530 35540823 35540778 8.010000e-08 69.4
65 TraesCS7D01G216300 chr2B 76.078 510 79 35 17 510 66963881 66963399 4.490000e-55 226.0
66 TraesCS7D01G216300 chr2B 71.721 488 119 16 2401 2877 551634163 551633684 7.850000e-23 119.0
67 TraesCS7D01G216300 chr2B 81.000 100 8 5 564 653 695361783 695361685 8.010000e-08 69.4
68 TraesCS7D01G216300 chr2B 97.297 37 0 1 560 596 146992330 146992295 1.340000e-05 62.1
69 TraesCS7D01G216300 chr3A 96.183 131 5 0 2 132 30746537 30746407 9.730000e-52 215.0
70 TraesCS7D01G216300 chr3A 92.308 52 4 0 2479 2530 10500652 10500703 1.720000e-09 75.0
71 TraesCS7D01G216300 chr5B 84.358 179 17 2 565 733 9272584 9272407 9.940000e-37 165.0
72 TraesCS7D01G216300 chr2A 89.683 126 8 4 181 302 71672918 71672794 5.980000e-34 156.0
73 TraesCS7D01G216300 chr2A 72.747 455 107 14 2433 2877 613988618 613988171 2.170000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G216300 chr7D 176157905 176162369 4464 False 8246.000000 8246 100.0000 1 4465 1 chr7D.!!$F1 4464
1 TraesCS7D01G216300 chr7B 141956179 141958967 2788 True 2160.500000 4187 91.5370 770 3620 2 chr7B.!!$R4 2850
2 TraesCS7D01G216300 chr7A 178615518 178618192 2674 True 1407.633333 4084 94.6510 773 3501 3 chr7A.!!$R4 2728
3 TraesCS7D01G216300 chr7A 520870523 520871224 701 True 460.000000 460 79.2960 3787 4465 1 chr7A.!!$R1 678
4 TraesCS7D01G216300 chr3D 545817643 545818196 553 True 368.000000 514 91.4850 1 511 2 chr3D.!!$R1 510
5 TraesCS7D01G216300 chr1D 111062757 111063451 694 False 501.000000 501 80.5440 3802 4465 1 chr1D.!!$F2 663
6 TraesCS7D01G216300 chr6B 674373264 674373889 625 True 468.000000 468 80.9900 3862 4456 1 chr6B.!!$R5 594
7 TraesCS7D01G216300 chr6D 421477424 421478054 630 False 399.000000 399 78.9640 3861 4465 1 chr6D.!!$F1 604
8 TraesCS7D01G216300 chr3B 53202484 53203096 612 False 388.000000 388 78.9980 3878 4465 1 chr3B.!!$F1 587
9 TraesCS7D01G216300 chr3B 575300360 575300915 555 True 233.000000 255 87.2795 1 514 2 chr3B.!!$R2 513
10 TraesCS7D01G216300 chr1B 68945641 68946343 702 False 274.000000 274 74.3550 2400 3126 1 chr1B.!!$F1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 736 0.041982 TTTTTATGGGGGTGGGCTCC 59.958 55.0 0.0 0.0 0.00 4.70 F
1988 2084 0.036294 GGACCTTTCAGACCTTCGGG 60.036 60.0 0.0 0.0 41.87 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 2174 0.106015 ACCTTTTCTTGCTGGTGGCT 60.106 50.0 0.0 0.00 42.39 4.75 R
3914 4024 0.036875 AGAAATGCCCCGCTATAGCC 59.963 55.0 19.0 5.49 37.91 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 9.443283 GTTCTCAATGAATATGAAACTATGTGC 57.557 33.333 0.00 0.00 36.99 4.57
277 322 3.866582 AGGGATGCTGGCGGTAGC 61.867 66.667 0.00 0.00 43.95 3.58
281 326 0.179056 GGATGCTGGCGGTAGCTTTA 60.179 55.000 0.00 0.00 44.01 1.85
282 327 0.938008 GATGCTGGCGGTAGCTTTAC 59.062 55.000 0.00 0.00 44.01 2.01
321 366 0.462403 GGCGGCGGTAAGTCCATTTA 60.462 55.000 9.78 0.00 35.57 1.40
332 377 3.040147 AGTCCATTTACCACGTGTCAG 57.960 47.619 15.65 1.33 0.00 3.51
470 550 1.002069 ATCAAACAGGGGCCAGATCA 58.998 50.000 4.39 0.00 0.00 2.92
483 563 2.614057 GCCAGATCACCAATTTAGACCG 59.386 50.000 0.00 0.00 0.00 4.79
511 591 3.868661 GGGTCAAAACACGAAATTTTGCT 59.131 39.130 5.27 0.00 43.62 3.91
514 594 3.308323 TCAAAACACGAAATTTTGCTGCC 59.692 39.130 5.27 0.00 43.62 4.85
515 595 1.864565 AACACGAAATTTTGCTGCCC 58.135 45.000 5.27 0.00 0.00 5.36
516 596 0.318614 ACACGAAATTTTGCTGCCCG 60.319 50.000 5.27 0.00 0.00 6.13
517 597 0.318614 CACGAAATTTTGCTGCCCGT 60.319 50.000 5.27 0.00 0.00 5.28
518 598 1.068885 CACGAAATTTTGCTGCCCGTA 60.069 47.619 5.27 0.00 0.00 4.02
519 599 1.199097 ACGAAATTTTGCTGCCCGTAG 59.801 47.619 5.27 0.00 0.00 3.51
535 615 1.549170 CGTAGGGGCTCATATACCACC 59.451 57.143 0.00 0.00 0.00 4.61
536 616 2.616524 GTAGGGGCTCATATACCACCA 58.383 52.381 0.00 0.00 0.00 4.17
537 617 1.435256 AGGGGCTCATATACCACCAC 58.565 55.000 0.00 0.00 0.00 4.16
538 618 1.061346 AGGGGCTCATATACCACCACT 60.061 52.381 0.00 0.00 0.00 4.00
539 619 1.348036 GGGGCTCATATACCACCACTC 59.652 57.143 0.00 0.00 0.00 3.51
540 620 2.047061 GGGCTCATATACCACCACTCA 58.953 52.381 0.00 0.00 0.00 3.41
541 621 2.224305 GGGCTCATATACCACCACTCAC 60.224 54.545 0.00 0.00 0.00 3.51
542 622 2.224305 GGCTCATATACCACCACTCACC 60.224 54.545 0.00 0.00 0.00 4.02
543 623 2.434336 GCTCATATACCACCACTCACCA 59.566 50.000 0.00 0.00 0.00 4.17
544 624 3.741388 GCTCATATACCACCACTCACCAC 60.741 52.174 0.00 0.00 0.00 4.16
545 625 2.769663 TCATATACCACCACTCACCACC 59.230 50.000 0.00 0.00 0.00 4.61
546 626 1.187974 TATACCACCACTCACCACCG 58.812 55.000 0.00 0.00 0.00 4.94
547 627 0.834687 ATACCACCACTCACCACCGT 60.835 55.000 0.00 0.00 0.00 4.83
548 628 1.750341 TACCACCACTCACCACCGTG 61.750 60.000 0.00 0.00 41.72 4.94
549 629 2.972505 CACCACTCACCACCGTGC 60.973 66.667 0.00 0.00 40.04 5.34
550 630 4.602259 ACCACTCACCACCGTGCG 62.602 66.667 0.00 0.00 40.04 5.34
551 631 4.602259 CCACTCACCACCGTGCGT 62.602 66.667 0.00 0.00 38.46 5.24
552 632 3.036084 CACTCACCACCGTGCGTC 61.036 66.667 0.00 0.00 35.77 5.19
553 633 4.295119 ACTCACCACCGTGCGTCC 62.295 66.667 0.00 0.00 40.04 4.79
554 634 3.991051 CTCACCACCGTGCGTCCT 61.991 66.667 0.00 0.00 40.04 3.85
555 635 3.515316 CTCACCACCGTGCGTCCTT 62.515 63.158 0.00 0.00 40.04 3.36
556 636 2.590575 CACCACCGTGCGTCCTTT 60.591 61.111 0.00 0.00 32.04 3.11
557 637 2.280592 ACCACCGTGCGTCCTTTC 60.281 61.111 0.00 0.00 0.00 2.62
558 638 3.047877 CCACCGTGCGTCCTTTCC 61.048 66.667 0.00 0.00 0.00 3.13
559 639 2.280524 CACCGTGCGTCCTTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
560 640 1.890041 CACCGTGCGTCCTTTCCAA 60.890 57.895 0.00 0.00 0.00 3.53
561 641 1.890510 ACCGTGCGTCCTTTCCAAC 60.891 57.895 0.00 0.00 0.00 3.77
562 642 1.890041 CCGTGCGTCCTTTCCAACA 60.890 57.895 0.00 0.00 0.00 3.33
563 643 1.278637 CGTGCGTCCTTTCCAACAC 59.721 57.895 0.00 0.00 0.00 3.32
564 644 1.652563 GTGCGTCCTTTCCAACACC 59.347 57.895 0.00 0.00 0.00 4.16
565 645 1.098712 GTGCGTCCTTTCCAACACCA 61.099 55.000 0.00 0.00 0.00 4.17
566 646 0.394488 TGCGTCCTTTCCAACACCAA 60.394 50.000 0.00 0.00 0.00 3.67
567 647 0.958822 GCGTCCTTTCCAACACCAAT 59.041 50.000 0.00 0.00 0.00 3.16
568 648 2.156098 GCGTCCTTTCCAACACCAATA 58.844 47.619 0.00 0.00 0.00 1.90
569 649 2.554893 GCGTCCTTTCCAACACCAATAA 59.445 45.455 0.00 0.00 0.00 1.40
570 650 3.192633 GCGTCCTTTCCAACACCAATAAT 59.807 43.478 0.00 0.00 0.00 1.28
571 651 4.732784 CGTCCTTTCCAACACCAATAATG 58.267 43.478 0.00 0.00 0.00 1.90
572 652 4.494484 GTCCTTTCCAACACCAATAATGC 58.506 43.478 0.00 0.00 0.00 3.56
573 653 4.220602 GTCCTTTCCAACACCAATAATGCT 59.779 41.667 0.00 0.00 0.00 3.79
574 654 5.417580 GTCCTTTCCAACACCAATAATGCTA 59.582 40.000 0.00 0.00 0.00 3.49
575 655 6.013379 TCCTTTCCAACACCAATAATGCTAA 58.987 36.000 0.00 0.00 0.00 3.09
576 656 6.495181 TCCTTTCCAACACCAATAATGCTAAA 59.505 34.615 0.00 0.00 0.00 1.85
577 657 6.589907 CCTTTCCAACACCAATAATGCTAAAC 59.410 38.462 0.00 0.00 0.00 2.01
578 658 6.656632 TTCCAACACCAATAATGCTAAACA 57.343 33.333 0.00 0.00 0.00 2.83
579 659 6.849085 TCCAACACCAATAATGCTAAACAT 57.151 33.333 0.00 0.00 42.30 2.71
580 660 7.946381 TCCAACACCAATAATGCTAAACATA 57.054 32.000 0.00 0.00 38.34 2.29
581 661 7.767261 TCCAACACCAATAATGCTAAACATAC 58.233 34.615 0.00 0.00 38.34 2.39
582 662 7.394641 TCCAACACCAATAATGCTAAACATACA 59.605 33.333 0.00 0.00 38.34 2.29
583 663 8.031864 CCAACACCAATAATGCTAAACATACAA 58.968 33.333 0.00 0.00 38.34 2.41
584 664 9.416794 CAACACCAATAATGCTAAACATACAAA 57.583 29.630 0.00 0.00 38.34 2.83
585 665 9.638239 AACACCAATAATGCTAAACATACAAAG 57.362 29.630 0.00 0.00 38.34 2.77
586 666 8.250332 ACACCAATAATGCTAAACATACAAAGG 58.750 33.333 0.00 0.00 38.34 3.11
587 667 8.250332 CACCAATAATGCTAAACATACAAAGGT 58.750 33.333 0.00 0.00 38.34 3.50
588 668 8.811994 ACCAATAATGCTAAACATACAAAGGTT 58.188 29.630 0.00 0.00 38.34 3.50
589 669 9.651913 CCAATAATGCTAAACATACAAAGGTTT 57.348 29.630 0.00 0.00 42.00 3.27
594 674 9.638239 AATGCTAAACATACAAAGGTTTACATG 57.362 29.630 0.00 0.00 40.00 3.21
595 675 7.087639 TGCTAAACATACAAAGGTTTACATGC 58.912 34.615 0.00 0.00 40.00 4.06
596 676 7.040062 TGCTAAACATACAAAGGTTTACATGCT 60.040 33.333 0.00 0.00 40.00 3.79
597 677 7.273381 GCTAAACATACAAAGGTTTACATGCTG 59.727 37.037 0.00 0.00 40.00 4.41
598 678 6.892658 AACATACAAAGGTTTACATGCTGA 57.107 33.333 0.00 0.00 0.00 4.26
599 679 6.254281 ACATACAAAGGTTTACATGCTGAC 57.746 37.500 0.00 0.00 0.00 3.51
600 680 6.003950 ACATACAAAGGTTTACATGCTGACT 58.996 36.000 0.00 0.00 0.00 3.41
601 681 7.165485 ACATACAAAGGTTTACATGCTGACTA 58.835 34.615 0.00 0.00 0.00 2.59
602 682 7.334421 ACATACAAAGGTTTACATGCTGACTAG 59.666 37.037 0.00 0.00 0.00 2.57
603 683 5.003804 ACAAAGGTTTACATGCTGACTAGG 58.996 41.667 0.00 0.00 0.00 3.02
604 684 5.221843 ACAAAGGTTTACATGCTGACTAGGA 60.222 40.000 0.00 0.00 0.00 2.94
605 685 5.700402 AAGGTTTACATGCTGACTAGGAT 57.300 39.130 0.00 0.00 35.07 3.24
606 686 5.700402 AGGTTTACATGCTGACTAGGATT 57.300 39.130 0.00 0.00 32.01 3.01
607 687 6.067217 AGGTTTACATGCTGACTAGGATTT 57.933 37.500 0.00 0.00 32.01 2.17
608 688 6.485171 AGGTTTACATGCTGACTAGGATTTT 58.515 36.000 0.00 0.00 32.01 1.82
609 689 6.948309 AGGTTTACATGCTGACTAGGATTTTT 59.052 34.615 0.00 0.00 32.01 1.94
630 710 7.812690 TTTTTCAAACTAACTAACCTCTCCC 57.187 36.000 0.00 0.00 0.00 4.30
631 711 5.494390 TTCAAACTAACTAACCTCTCCCC 57.506 43.478 0.00 0.00 0.00 4.81
632 712 4.759953 TCAAACTAACTAACCTCTCCCCT 58.240 43.478 0.00 0.00 0.00 4.79
633 713 4.776308 TCAAACTAACTAACCTCTCCCCTC 59.224 45.833 0.00 0.00 0.00 4.30
634 714 4.696040 AACTAACTAACCTCTCCCCTCT 57.304 45.455 0.00 0.00 0.00 3.69
635 715 3.983821 ACTAACTAACCTCTCCCCTCTG 58.016 50.000 0.00 0.00 0.00 3.35
636 716 3.596956 ACTAACTAACCTCTCCCCTCTGA 59.403 47.826 0.00 0.00 0.00 3.27
637 717 3.786213 AACTAACCTCTCCCCTCTGAT 57.214 47.619 0.00 0.00 0.00 2.90
638 718 3.786213 ACTAACCTCTCCCCTCTGATT 57.214 47.619 0.00 0.00 0.00 2.57
639 719 4.081695 ACTAACCTCTCCCCTCTGATTT 57.918 45.455 0.00 0.00 0.00 2.17
640 720 4.439860 ACTAACCTCTCCCCTCTGATTTT 58.560 43.478 0.00 0.00 0.00 1.82
641 721 4.852697 ACTAACCTCTCCCCTCTGATTTTT 59.147 41.667 0.00 0.00 0.00 1.94
642 722 6.030082 ACTAACCTCTCCCCTCTGATTTTTA 58.970 40.000 0.00 0.00 0.00 1.52
643 723 6.678857 ACTAACCTCTCCCCTCTGATTTTTAT 59.321 38.462 0.00 0.00 0.00 1.40
644 724 5.379706 ACCTCTCCCCTCTGATTTTTATG 57.620 43.478 0.00 0.00 0.00 1.90
645 725 4.166919 ACCTCTCCCCTCTGATTTTTATGG 59.833 45.833 0.00 0.00 0.00 2.74
646 726 4.446889 CCTCTCCCCTCTGATTTTTATGGG 60.447 50.000 0.00 0.00 34.68 4.00
649 729 3.688049 CCCTCTGATTTTTATGGGGGT 57.312 47.619 0.00 0.00 0.00 4.95
650 730 3.299503 CCCTCTGATTTTTATGGGGGTG 58.700 50.000 0.00 0.00 0.00 4.61
651 731 3.299503 CCTCTGATTTTTATGGGGGTGG 58.700 50.000 0.00 0.00 0.00 4.61
652 732 3.299503 CTCTGATTTTTATGGGGGTGGG 58.700 50.000 0.00 0.00 0.00 4.61
653 733 1.762370 CTGATTTTTATGGGGGTGGGC 59.238 52.381 0.00 0.00 0.00 5.36
654 734 1.364328 TGATTTTTATGGGGGTGGGCT 59.636 47.619 0.00 0.00 0.00 5.19
655 735 2.039418 GATTTTTATGGGGGTGGGCTC 58.961 52.381 0.00 0.00 0.00 4.70
656 736 0.041982 TTTTTATGGGGGTGGGCTCC 59.958 55.000 0.00 0.00 0.00 4.70
657 737 0.853586 TTTTATGGGGGTGGGCTCCT 60.854 55.000 0.00 0.00 34.96 3.69
658 738 0.853586 TTTATGGGGGTGGGCTCCTT 60.854 55.000 0.00 0.00 34.96 3.36
659 739 1.286305 TTATGGGGGTGGGCTCCTTC 61.286 60.000 0.00 0.00 34.96 3.46
660 740 2.208562 TATGGGGGTGGGCTCCTTCT 62.209 60.000 0.00 0.00 34.96 2.85
661 741 3.412408 GGGGGTGGGCTCCTTCTC 61.412 72.222 0.00 0.00 34.96 2.87
662 742 3.412408 GGGGTGGGCTCCTTCTCC 61.412 72.222 0.00 0.00 30.72 3.71
663 743 3.412408 GGGTGGGCTCCTTCTCCC 61.412 72.222 0.00 0.00 42.93 4.30
664 744 2.285743 GGTGGGCTCCTTCTCCCT 60.286 66.667 0.00 0.00 43.04 4.20
665 745 1.925972 GGTGGGCTCCTTCTCCCTT 60.926 63.158 0.00 0.00 43.04 3.95
666 746 1.501654 GGTGGGCTCCTTCTCCCTTT 61.502 60.000 0.00 0.00 43.04 3.11
667 747 0.405973 GTGGGCTCCTTCTCCCTTTT 59.594 55.000 0.00 0.00 43.04 2.27
668 748 1.633945 GTGGGCTCCTTCTCCCTTTTA 59.366 52.381 0.00 0.00 43.04 1.52
669 749 2.041216 GTGGGCTCCTTCTCCCTTTTAA 59.959 50.000 0.00 0.00 43.04 1.52
670 750 2.926329 TGGGCTCCTTCTCCCTTTTAAT 59.074 45.455 0.00 0.00 43.04 1.40
671 751 3.053619 TGGGCTCCTTCTCCCTTTTAATC 60.054 47.826 0.00 0.00 43.04 1.75
672 752 3.203263 GGGCTCCTTCTCCCTTTTAATCT 59.797 47.826 0.00 0.00 39.46 2.40
673 753 4.325422 GGGCTCCTTCTCCCTTTTAATCTT 60.325 45.833 0.00 0.00 39.46 2.40
674 754 4.884744 GGCTCCTTCTCCCTTTTAATCTTC 59.115 45.833 0.00 0.00 0.00 2.87
675 755 5.501156 GCTCCTTCTCCCTTTTAATCTTCA 58.499 41.667 0.00 0.00 0.00 3.02
676 756 5.946377 GCTCCTTCTCCCTTTTAATCTTCAA 59.054 40.000 0.00 0.00 0.00 2.69
677 757 6.605194 GCTCCTTCTCCCTTTTAATCTTCAAT 59.395 38.462 0.00 0.00 0.00 2.57
678 758 7.201776 GCTCCTTCTCCCTTTTAATCTTCAATC 60.202 40.741 0.00 0.00 0.00 2.67
679 759 7.698912 TCCTTCTCCCTTTTAATCTTCAATCA 58.301 34.615 0.00 0.00 0.00 2.57
680 760 8.170061 TCCTTCTCCCTTTTAATCTTCAATCAA 58.830 33.333 0.00 0.00 0.00 2.57
681 761 8.806146 CCTTCTCCCTTTTAATCTTCAATCAAA 58.194 33.333 0.00 0.00 0.00 2.69
683 763 9.981114 TTCTCCCTTTTAATCTTCAATCAAAAC 57.019 29.630 0.00 0.00 0.00 2.43
684 764 8.585018 TCTCCCTTTTAATCTTCAATCAAAACC 58.415 33.333 0.00 0.00 0.00 3.27
685 765 8.256356 TCCCTTTTAATCTTCAATCAAAACCA 57.744 30.769 0.00 0.00 0.00 3.67
686 766 8.709308 TCCCTTTTAATCTTCAATCAAAACCAA 58.291 29.630 0.00 0.00 0.00 3.67
687 767 8.773645 CCCTTTTAATCTTCAATCAAAACCAAC 58.226 33.333 0.00 0.00 0.00 3.77
688 768 8.773645 CCTTTTAATCTTCAATCAAAACCAACC 58.226 33.333 0.00 0.00 0.00 3.77
689 769 9.546428 CTTTTAATCTTCAATCAAAACCAACCT 57.454 29.630 0.00 0.00 0.00 3.50
690 770 9.898152 TTTTAATCTTCAATCAAAACCAACCTT 57.102 25.926 0.00 0.00 0.00 3.50
691 771 9.898152 TTTAATCTTCAATCAAAACCAACCTTT 57.102 25.926 0.00 0.00 0.00 3.11
694 774 9.492973 AATCTTCAATCAAAACCAACCTTTATG 57.507 29.630 0.00 0.00 0.00 1.90
695 775 8.017418 TCTTCAATCAAAACCAACCTTTATGT 57.983 30.769 0.00 0.00 0.00 2.29
696 776 9.137459 TCTTCAATCAAAACCAACCTTTATGTA 57.863 29.630 0.00 0.00 0.00 2.29
697 777 9.757227 CTTCAATCAAAACCAACCTTTATGTAA 57.243 29.630 0.00 0.00 0.00 2.41
703 783 9.892130 TCAAAACCAACCTTTATGTAAAAATGT 57.108 25.926 0.00 0.00 0.00 2.71
704 784 9.928236 CAAAACCAACCTTTATGTAAAAATGTG 57.072 29.630 0.00 0.00 0.00 3.21
705 785 9.674068 AAAACCAACCTTTATGTAAAAATGTGT 57.326 25.926 0.00 0.00 0.00 3.72
709 789 9.581099 CCAACCTTTATGTAAAAATGTGTATCC 57.419 33.333 0.00 0.00 0.00 2.59
718 798 9.855021 ATGTAAAAATGTGTATCCTTTTGTAGC 57.145 29.630 0.00 0.00 0.00 3.58
719 799 8.018520 TGTAAAAATGTGTATCCTTTTGTAGCG 58.981 33.333 0.00 0.00 0.00 4.26
720 800 6.569179 AAAATGTGTATCCTTTTGTAGCGT 57.431 33.333 0.00 0.00 0.00 5.07
721 801 5.545658 AATGTGTATCCTTTTGTAGCGTG 57.454 39.130 0.00 0.00 0.00 5.34
722 802 3.997762 TGTGTATCCTTTTGTAGCGTGT 58.002 40.909 0.00 0.00 0.00 4.49
723 803 5.136816 TGTGTATCCTTTTGTAGCGTGTA 57.863 39.130 0.00 0.00 0.00 2.90
724 804 5.165676 TGTGTATCCTTTTGTAGCGTGTAG 58.834 41.667 0.00 0.00 0.00 2.74
737 817 1.725641 CGTGTAGCATTGCTCTTCCA 58.274 50.000 15.81 5.36 40.44 3.53
738 818 2.076100 CGTGTAGCATTGCTCTTCCAA 58.924 47.619 15.81 0.00 40.44 3.53
739 819 2.159653 CGTGTAGCATTGCTCTTCCAAC 60.160 50.000 15.81 7.23 40.44 3.77
740 820 3.077359 GTGTAGCATTGCTCTTCCAACT 58.923 45.455 15.81 0.00 40.44 3.16
741 821 3.126000 GTGTAGCATTGCTCTTCCAACTC 59.874 47.826 15.81 4.00 40.44 3.01
742 822 2.875094 AGCATTGCTCTTCCAACTCT 57.125 45.000 5.03 0.00 30.62 3.24
743 823 2.709213 AGCATTGCTCTTCCAACTCTC 58.291 47.619 5.03 0.00 30.62 3.20
744 824 1.742268 GCATTGCTCTTCCAACTCTCC 59.258 52.381 0.16 0.00 0.00 3.71
745 825 2.877300 GCATTGCTCTTCCAACTCTCCA 60.877 50.000 0.16 0.00 0.00 3.86
746 826 2.847327 TTGCTCTTCCAACTCTCCAG 57.153 50.000 0.00 0.00 0.00 3.86
747 827 0.322975 TGCTCTTCCAACTCTCCAGC 59.677 55.000 0.00 0.00 0.00 4.85
748 828 0.392327 GCTCTTCCAACTCTCCAGCC 60.392 60.000 0.00 0.00 0.00 4.85
749 829 0.979665 CTCTTCCAACTCTCCAGCCA 59.020 55.000 0.00 0.00 0.00 4.75
750 830 1.558756 CTCTTCCAACTCTCCAGCCAT 59.441 52.381 0.00 0.00 0.00 4.40
751 831 1.556911 TCTTCCAACTCTCCAGCCATC 59.443 52.381 0.00 0.00 0.00 3.51
752 832 0.620556 TTCCAACTCTCCAGCCATCC 59.379 55.000 0.00 0.00 0.00 3.51
753 833 0.547471 TCCAACTCTCCAGCCATCCA 60.547 55.000 0.00 0.00 0.00 3.41
754 834 0.107312 CCAACTCTCCAGCCATCCAG 60.107 60.000 0.00 0.00 0.00 3.86
755 835 0.747283 CAACTCTCCAGCCATCCAGC 60.747 60.000 0.00 0.00 0.00 4.85
756 836 1.919600 AACTCTCCAGCCATCCAGCC 61.920 60.000 0.00 0.00 0.00 4.85
757 837 2.285592 TCTCCAGCCATCCAGCCA 60.286 61.111 0.00 0.00 0.00 4.75
758 838 1.695239 TCTCCAGCCATCCAGCCAT 60.695 57.895 0.00 0.00 0.00 4.40
759 839 1.228184 CTCCAGCCATCCAGCCATC 60.228 63.158 0.00 0.00 0.00 3.51
760 840 1.991339 CTCCAGCCATCCAGCCATCA 61.991 60.000 0.00 0.00 0.00 3.07
761 841 1.153061 CCAGCCATCCAGCCATCAT 59.847 57.895 0.00 0.00 0.00 2.45
762 842 0.894184 CCAGCCATCCAGCCATCATC 60.894 60.000 0.00 0.00 0.00 2.92
763 843 0.894184 CAGCCATCCAGCCATCATCC 60.894 60.000 0.00 0.00 0.00 3.51
764 844 1.152138 GCCATCCAGCCATCATCCA 59.848 57.895 0.00 0.00 0.00 3.41
765 845 0.251653 GCCATCCAGCCATCATCCAT 60.252 55.000 0.00 0.00 0.00 3.41
766 846 1.005097 GCCATCCAGCCATCATCCATA 59.995 52.381 0.00 0.00 0.00 2.74
767 847 2.719739 CCATCCAGCCATCATCCATAC 58.280 52.381 0.00 0.00 0.00 2.39
768 848 2.353323 CATCCAGCCATCATCCATACG 58.647 52.381 0.00 0.00 0.00 3.06
843 933 1.278985 CCTGAACCCATGCTAGTCACA 59.721 52.381 0.00 0.00 0.00 3.58
844 934 2.350522 CTGAACCCATGCTAGTCACAC 58.649 52.381 0.00 0.00 0.00 3.82
870 960 4.041198 ACACATTCCTCTCCTCCGTTAAAA 59.959 41.667 0.00 0.00 0.00 1.52
871 961 5.001232 CACATTCCTCTCCTCCGTTAAAAA 58.999 41.667 0.00 0.00 0.00 1.94
942 1032 1.683365 CTCCCTCCCCGACCGTTAA 60.683 63.158 0.00 0.00 0.00 2.01
947 1037 0.457337 CTCCCCGACCGTTAAGTTCG 60.457 60.000 0.00 0.00 0.00 3.95
1012 1102 1.815003 CACCCACAAAGCCATCTCTTC 59.185 52.381 0.00 0.00 0.00 2.87
1118 1211 3.505680 CCACAAAATCTCATGACCCGAAA 59.494 43.478 0.00 0.00 0.00 3.46
1286 1382 3.302347 CTCGGCCACGCTCTCCTTT 62.302 63.158 2.24 0.00 40.69 3.11
1289 1385 1.003233 GGCCACGCTCTCCTTTTCT 60.003 57.895 0.00 0.00 0.00 2.52
1295 1391 1.001406 ACGCTCTCCTTTTCTGACCTG 59.999 52.381 0.00 0.00 0.00 4.00
1394 1490 3.299977 ACCGTACTGTGCAGCCGA 61.300 61.111 11.66 0.00 0.00 5.54
1461 1557 0.882474 CAGGTTCTCCTTCGTCGTCT 59.118 55.000 0.00 0.00 43.07 4.18
1577 1673 1.446272 CTTCAACTCCTCGGTCGCC 60.446 63.158 0.00 0.00 0.00 5.54
1655 1751 2.571216 CGGGGTGGAGTTCGACACT 61.571 63.158 4.18 2.45 39.07 3.55
1751 1847 2.098680 GTCGACCTCGCTGACTCG 59.901 66.667 3.51 0.00 39.60 4.18
1754 1850 2.750637 GACCTCGCTGACTCGGGA 60.751 66.667 0.00 0.00 29.93 5.14
1842 1938 1.139947 GTGTCGCTGAGCTACTCCC 59.860 63.158 10.52 0.00 0.00 4.30
1925 2021 0.866061 CCATGTACGTCGGCTTCTCG 60.866 60.000 0.00 0.00 0.00 4.04
1988 2084 0.036294 GGACCTTTCAGACCTTCGGG 60.036 60.000 0.00 0.00 41.87 5.14
2050 2146 2.579201 CAATGTCTCGGAGCCGGT 59.421 61.111 9.29 0.00 40.25 5.28
2055 2151 4.671590 TCTCGGAGCCGGTGGTGA 62.672 66.667 9.29 0.00 40.25 4.02
2207 2303 1.214062 CAGCTCGAAGAAGGACGCT 59.786 57.895 0.00 0.00 34.09 5.07
2459 2555 0.109342 ACAAGAACCTGGTCCAGCTG 59.891 55.000 13.99 6.78 0.00 4.24
2528 2624 4.431131 CCCAACGGCAGCCTGGAT 62.431 66.667 19.48 0.00 31.38 3.41
2747 2849 2.260869 CCACAACAAGAGCCCGGTG 61.261 63.158 0.00 0.00 0.00 4.94
3465 3568 6.672147 CCGATTGTTCTTCTCTTGTTTGAAT 58.328 36.000 0.00 0.00 0.00 2.57
3515 3618 3.827008 TTGCCAACAAAATTGCTACCA 57.173 38.095 0.00 0.00 31.21 3.25
3528 3631 1.691219 CTACCACAGTGCCCCCATT 59.309 57.895 0.00 0.00 0.00 3.16
3529 3632 0.394352 CTACCACAGTGCCCCCATTC 60.394 60.000 0.00 0.00 0.00 2.67
3544 3647 3.702548 CCCCATTCATTGAAATCAGCTCA 59.297 43.478 2.68 0.00 0.00 4.26
3555 3658 2.706339 ATCAGCTCATTGGTCCTGTC 57.294 50.000 0.00 0.00 0.00 3.51
3601 3704 8.166726 AGGGATTTTGGAGGATATGATTTCTAC 58.833 37.037 0.00 0.00 0.00 2.59
3610 3713 9.225436 GGAGGATATGATTTCTACAGGAATTTC 57.775 37.037 0.00 0.00 33.53 2.17
3629 3732 8.894731 GGAATTTCTTCCTTGGAGTAAGATAAC 58.105 37.037 0.00 0.00 46.44 1.89
3630 3733 9.449719 GAATTTCTTCCTTGGAGTAAGATAACA 57.550 33.333 0.00 0.00 38.76 2.41
3631 3734 9.454859 AATTTCTTCCTTGGAGTAAGATAACAG 57.545 33.333 0.00 0.00 38.76 3.16
3632 3735 7.792364 TTCTTCCTTGGAGTAAGATAACAGA 57.208 36.000 0.00 0.00 38.76 3.41
3633 3736 7.979786 TCTTCCTTGGAGTAAGATAACAGAT 57.020 36.000 0.00 0.00 38.76 2.90
3634 3737 7.786030 TCTTCCTTGGAGTAAGATAACAGATG 58.214 38.462 0.00 0.00 38.76 2.90
3635 3738 7.619698 TCTTCCTTGGAGTAAGATAACAGATGA 59.380 37.037 0.00 0.00 38.76 2.92
3636 3739 7.733773 TCCTTGGAGTAAGATAACAGATGAA 57.266 36.000 0.00 0.00 38.76 2.57
3637 3740 8.324191 TCCTTGGAGTAAGATAACAGATGAAT 57.676 34.615 0.00 0.00 38.76 2.57
3638 3741 8.772250 TCCTTGGAGTAAGATAACAGATGAATT 58.228 33.333 0.00 0.00 38.76 2.17
3639 3742 8.834465 CCTTGGAGTAAGATAACAGATGAATTG 58.166 37.037 0.00 0.00 38.76 2.32
3640 3743 7.792374 TGGAGTAAGATAACAGATGAATTGC 57.208 36.000 0.00 0.00 0.00 3.56
3641 3744 7.568349 TGGAGTAAGATAACAGATGAATTGCT 58.432 34.615 0.00 0.00 0.00 3.91
3642 3745 8.704668 TGGAGTAAGATAACAGATGAATTGCTA 58.295 33.333 0.00 0.00 0.00 3.49
3643 3746 9.717942 GGAGTAAGATAACAGATGAATTGCTAT 57.282 33.333 0.00 0.00 0.00 2.97
3652 3755 8.798859 AACAGATGAATTGCTATCTTACACTT 57.201 30.769 0.00 0.00 31.53 3.16
3653 3756 8.430801 ACAGATGAATTGCTATCTTACACTTC 57.569 34.615 0.00 0.00 31.53 3.01
3654 3757 8.263640 ACAGATGAATTGCTATCTTACACTTCT 58.736 33.333 0.00 0.00 31.53 2.85
3655 3758 9.107177 CAGATGAATTGCTATCTTACACTTCTT 57.893 33.333 0.00 0.00 31.53 2.52
3656 3759 9.678260 AGATGAATTGCTATCTTACACTTCTTT 57.322 29.630 0.00 0.00 29.64 2.52
3657 3760 9.713740 GATGAATTGCTATCTTACACTTCTTTG 57.286 33.333 0.00 0.00 0.00 2.77
3658 3761 8.846943 TGAATTGCTATCTTACACTTCTTTGA 57.153 30.769 0.00 0.00 0.00 2.69
3659 3762 9.283768 TGAATTGCTATCTTACACTTCTTTGAA 57.716 29.630 0.00 0.00 0.00 2.69
3672 3775 8.887036 ACACTTCTTTGAAATTTTTATGGGAC 57.113 30.769 0.00 0.00 0.00 4.46
3673 3776 7.651704 ACACTTCTTTGAAATTTTTATGGGACG 59.348 33.333 0.00 0.00 0.00 4.79
3674 3777 7.116233 CACTTCTTTGAAATTTTTATGGGACGG 59.884 37.037 0.00 0.00 0.00 4.79
3675 3778 6.031751 TCTTTGAAATTTTTATGGGACGGG 57.968 37.500 0.00 0.00 0.00 5.28
3676 3779 5.540719 TCTTTGAAATTTTTATGGGACGGGT 59.459 36.000 0.00 0.00 0.00 5.28
3677 3780 5.810080 TTGAAATTTTTATGGGACGGGTT 57.190 34.783 0.00 0.00 0.00 4.11
3678 3781 6.912951 TTGAAATTTTTATGGGACGGGTTA 57.087 33.333 0.00 0.00 0.00 2.85
3679 3782 7.483580 TTGAAATTTTTATGGGACGGGTTAT 57.516 32.000 0.00 0.00 0.00 1.89
3680 3783 7.483580 TGAAATTTTTATGGGACGGGTTATT 57.516 32.000 0.00 0.00 0.00 1.40
3681 3784 7.908453 TGAAATTTTTATGGGACGGGTTATTT 58.092 30.769 0.00 0.00 0.00 1.40
3682 3785 8.035984 TGAAATTTTTATGGGACGGGTTATTTC 58.964 33.333 0.00 0.00 0.00 2.17
3683 3786 7.483580 AATTTTTATGGGACGGGTTATTTCA 57.516 32.000 0.00 0.00 0.00 2.69
3684 3787 5.900865 TTTTATGGGACGGGTTATTTCAC 57.099 39.130 0.00 0.00 0.00 3.18
3685 3788 4.571369 TTATGGGACGGGTTATTTCACA 57.429 40.909 0.00 0.00 0.00 3.58
3686 3789 2.483014 TGGGACGGGTTATTTCACAG 57.517 50.000 0.00 0.00 0.00 3.66
3687 3790 1.979308 TGGGACGGGTTATTTCACAGA 59.021 47.619 0.00 0.00 0.00 3.41
3688 3791 2.372504 TGGGACGGGTTATTTCACAGAA 59.627 45.455 0.00 0.00 0.00 3.02
3689 3792 3.181442 TGGGACGGGTTATTTCACAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
3690 3793 4.014406 GGGACGGGTTATTTCACAGAAAT 58.986 43.478 9.61 9.61 0.00 2.17
3691 3794 4.461431 GGGACGGGTTATTTCACAGAAATT 59.539 41.667 9.92 0.00 0.00 1.82
3692 3795 5.047590 GGGACGGGTTATTTCACAGAAATTT 60.048 40.000 9.92 0.00 0.00 1.82
3693 3796 6.452242 GGACGGGTTATTTCACAGAAATTTT 58.548 36.000 9.92 0.00 0.00 1.82
3694 3797 6.364976 GGACGGGTTATTTCACAGAAATTTTG 59.635 38.462 9.92 0.00 0.00 2.44
3695 3798 7.045126 ACGGGTTATTTCACAGAAATTTTGA 57.955 32.000 9.92 0.00 0.00 2.69
3696 3799 7.493367 ACGGGTTATTTCACAGAAATTTTGAA 58.507 30.769 9.92 0.62 0.00 2.69
3697 3800 7.651704 ACGGGTTATTTCACAGAAATTTTGAAG 59.348 33.333 9.92 2.57 31.11 3.02
3698 3801 7.116233 CGGGTTATTTCACAGAAATTTTGAAGG 59.884 37.037 9.92 0.00 31.11 3.46
3699 3802 8.147704 GGGTTATTTCACAGAAATTTTGAAGGA 58.852 33.333 9.92 0.00 31.11 3.36
3700 3803 9.541143 GGTTATTTCACAGAAATTTTGAAGGAA 57.459 29.630 9.92 1.78 31.11 3.36
3704 3807 8.839310 TTTCACAGAAATTTTGAAGGAACAAA 57.161 26.923 4.46 0.00 37.87 2.83
3714 3817 7.769272 TTTTGAAGGAACAAAACATGATGTC 57.231 32.000 0.00 0.00 42.33 3.06
3715 3818 6.713762 TTGAAGGAACAAAACATGATGTCT 57.286 33.333 0.00 0.00 0.00 3.41
3716 3819 6.317789 TGAAGGAACAAAACATGATGTCTC 57.682 37.500 0.00 3.03 0.00 3.36
3717 3820 5.827267 TGAAGGAACAAAACATGATGTCTCA 59.173 36.000 0.00 1.49 35.41 3.27
3718 3821 6.491062 TGAAGGAACAAAACATGATGTCTCAT 59.509 34.615 0.00 0.00 43.02 2.90
3733 3836 9.635520 ATGATGTCTCATGTTTTGAATTTCTTC 57.364 29.630 0.00 0.00 40.66 2.87
3734 3837 8.084073 TGATGTCTCATGTTTTGAATTTCTTCC 58.916 33.333 0.00 0.00 32.78 3.46
3735 3838 7.345422 TGTCTCATGTTTTGAATTTCTTCCA 57.655 32.000 0.00 0.00 32.78 3.53
3736 3839 7.954835 TGTCTCATGTTTTGAATTTCTTCCAT 58.045 30.769 0.00 0.00 32.78 3.41
3737 3840 7.868922 TGTCTCATGTTTTGAATTTCTTCCATG 59.131 33.333 0.00 5.57 32.78 3.66
3738 3841 7.869429 GTCTCATGTTTTGAATTTCTTCCATGT 59.131 33.333 13.44 0.00 33.07 3.21
3739 3842 8.423349 TCTCATGTTTTGAATTTCTTCCATGTT 58.577 29.630 13.44 0.00 33.07 2.71
3740 3843 8.961294 TCATGTTTTGAATTTCTTCCATGTTT 57.039 26.923 13.44 0.00 33.07 2.83
3741 3844 8.828644 TCATGTTTTGAATTTCTTCCATGTTTG 58.171 29.630 13.44 0.00 33.07 2.93
3742 3845 8.614346 CATGTTTTGAATTTCTTCCATGTTTGT 58.386 29.630 0.00 0.00 29.72 2.83
3743 3846 9.829507 ATGTTTTGAATTTCTTCCATGTTTGTA 57.170 25.926 0.00 0.00 0.00 2.41
3744 3847 9.658799 TGTTTTGAATTTCTTCCATGTTTGTAA 57.341 25.926 0.00 0.00 0.00 2.41
3749 3852 9.103861 TGAATTTCTTCCATGTTTGTAAAAACC 57.896 29.630 6.05 0.00 31.87 3.27
3750 3853 9.325198 GAATTTCTTCCATGTTTGTAAAAACCT 57.675 29.630 6.05 0.00 31.87 3.50
3751 3854 8.887036 ATTTCTTCCATGTTTGTAAAAACCTC 57.113 30.769 6.05 0.00 31.87 3.85
3752 3855 6.067263 TCTTCCATGTTTGTAAAAACCTCG 57.933 37.500 6.05 0.00 31.87 4.63
3753 3856 4.231718 TCCATGTTTGTAAAAACCTCGC 57.768 40.909 6.05 0.00 31.87 5.03
3754 3857 3.886505 TCCATGTTTGTAAAAACCTCGCT 59.113 39.130 6.05 0.00 31.87 4.93
3755 3858 5.064558 TCCATGTTTGTAAAAACCTCGCTA 58.935 37.500 6.05 0.00 31.87 4.26
3756 3859 5.180492 TCCATGTTTGTAAAAACCTCGCTAG 59.820 40.000 6.05 0.00 31.87 3.42
3757 3860 5.048991 CCATGTTTGTAAAAACCTCGCTAGT 60.049 40.000 6.05 0.00 31.87 2.57
3758 3861 5.662211 TGTTTGTAAAAACCTCGCTAGTC 57.338 39.130 6.05 0.00 31.87 2.59
3759 3862 5.117584 TGTTTGTAAAAACCTCGCTAGTCA 58.882 37.500 6.05 0.00 31.87 3.41
3760 3863 5.006941 TGTTTGTAAAAACCTCGCTAGTCAC 59.993 40.000 6.05 0.00 31.87 3.67
3761 3864 4.595762 TGTAAAAACCTCGCTAGTCACT 57.404 40.909 0.00 0.00 0.00 3.41
3762 3865 4.553323 TGTAAAAACCTCGCTAGTCACTC 58.447 43.478 0.00 0.00 0.00 3.51
3763 3866 2.349297 AAAACCTCGCTAGTCACTCG 57.651 50.000 0.00 0.00 0.00 4.18
3764 3867 1.245732 AAACCTCGCTAGTCACTCGT 58.754 50.000 0.00 0.00 0.00 4.18
3765 3868 1.245732 AACCTCGCTAGTCACTCGTT 58.754 50.000 0.00 0.00 0.00 3.85
3766 3869 1.245732 ACCTCGCTAGTCACTCGTTT 58.754 50.000 0.00 0.00 0.00 3.60
3767 3870 1.199558 ACCTCGCTAGTCACTCGTTTC 59.800 52.381 0.00 0.00 0.00 2.78
3768 3871 1.199327 CCTCGCTAGTCACTCGTTTCA 59.801 52.381 0.00 0.00 0.00 2.69
3769 3872 2.243407 CTCGCTAGTCACTCGTTTCAC 58.757 52.381 0.00 0.00 0.00 3.18
3770 3873 1.068748 TCGCTAGTCACTCGTTTCACC 60.069 52.381 0.00 0.00 0.00 4.02
3771 3874 1.335597 CGCTAGTCACTCGTTTCACCA 60.336 52.381 0.00 0.00 0.00 4.17
3772 3875 2.329379 GCTAGTCACTCGTTTCACCAG 58.671 52.381 0.00 0.00 0.00 4.00
3773 3876 2.329379 CTAGTCACTCGTTTCACCAGC 58.671 52.381 0.00 0.00 0.00 4.85
3774 3877 0.464036 AGTCACTCGTTTCACCAGCA 59.536 50.000 0.00 0.00 0.00 4.41
3775 3878 1.070758 AGTCACTCGTTTCACCAGCAT 59.929 47.619 0.00 0.00 0.00 3.79
3776 3879 2.299013 AGTCACTCGTTTCACCAGCATA 59.701 45.455 0.00 0.00 0.00 3.14
3777 3880 2.412089 GTCACTCGTTTCACCAGCATAC 59.588 50.000 0.00 0.00 0.00 2.39
3778 3881 2.036604 TCACTCGTTTCACCAGCATACA 59.963 45.455 0.00 0.00 0.00 2.29
3779 3882 2.157668 CACTCGTTTCACCAGCATACAC 59.842 50.000 0.00 0.00 0.00 2.90
3780 3883 2.224185 ACTCGTTTCACCAGCATACACA 60.224 45.455 0.00 0.00 0.00 3.72
3781 3884 3.002791 CTCGTTTCACCAGCATACACAT 58.997 45.455 0.00 0.00 0.00 3.21
3782 3885 3.000041 TCGTTTCACCAGCATACACATC 59.000 45.455 0.00 0.00 0.00 3.06
3783 3886 2.741517 CGTTTCACCAGCATACACATCA 59.258 45.455 0.00 0.00 0.00 3.07
3784 3887 3.424829 CGTTTCACCAGCATACACATCAC 60.425 47.826 0.00 0.00 0.00 3.06
3785 3888 2.401583 TCACCAGCATACACATCACC 57.598 50.000 0.00 0.00 0.00 4.02
3791 3894 2.868583 CAGCATACACATCACCACTAGC 59.131 50.000 0.00 0.00 0.00 3.42
3797 3900 1.995484 CACATCACCACTAGCAGAACG 59.005 52.381 0.00 0.00 0.00 3.95
3826 3931 3.179795 CGTTGCTATGTACTACGTCATGC 59.820 47.826 0.00 0.00 32.78 4.06
3838 3943 5.720202 ACTACGTCATGCTATCTTCAACAA 58.280 37.500 0.00 0.00 0.00 2.83
3839 3944 6.163476 ACTACGTCATGCTATCTTCAACAAA 58.837 36.000 0.00 0.00 0.00 2.83
3840 3945 5.283060 ACGTCATGCTATCTTCAACAAAC 57.717 39.130 0.00 0.00 0.00 2.93
3844 3949 3.134574 TGCTATCTTCAACAAACGGGT 57.865 42.857 0.00 0.00 0.00 5.28
3845 3950 3.071479 TGCTATCTTCAACAAACGGGTC 58.929 45.455 0.00 0.00 0.00 4.46
3849 3954 2.018515 TCTTCAACAAACGGGTCCAAC 58.981 47.619 0.00 0.00 0.00 3.77
3851 3956 2.060050 TCAACAAACGGGTCCAACAT 57.940 45.000 0.00 0.00 0.00 2.71
3858 3963 5.919755 ACAAACGGGTCCAACATAAAAATT 58.080 33.333 0.00 0.00 0.00 1.82
3859 3964 6.350103 ACAAACGGGTCCAACATAAAAATTT 58.650 32.000 0.00 0.00 0.00 1.82
3871 3981 6.024552 ACATAAAAATTTCACGATGCACCT 57.975 33.333 0.00 0.00 0.00 4.00
3887 3997 4.282496 TGCACCTTTTCCTTTTTCTACCA 58.718 39.130 0.00 0.00 0.00 3.25
3914 4024 1.741770 CCTTCCCGCTCAGTTTCCG 60.742 63.158 0.00 0.00 0.00 4.30
3939 4049 2.125147 CGGGGCATTTCTCGCTGA 60.125 61.111 0.00 0.00 0.00 4.26
3950 4060 1.153469 CTCGCTGAAGCCTCCTTCC 60.153 63.158 0.00 0.00 45.53 3.46
3955 4065 2.420687 CGCTGAAGCCTCCTTCCTTAAT 60.421 50.000 0.00 0.00 45.53 1.40
3984 4101 0.798776 CTCACCTTCGCCATGTGTTC 59.201 55.000 0.00 0.00 0.00 3.18
3989 4106 0.110238 CTTCGCCATGTGTTCCAACG 60.110 55.000 0.00 0.00 0.00 4.10
4048 4179 7.129622 ACACATACTATTGACACAAAACAACG 58.870 34.615 0.00 0.00 0.00 4.10
4069 4204 9.915629 ACAACGAATAACTATAGAGATCATTCC 57.084 33.333 6.78 0.00 0.00 3.01
4070 4205 9.914131 CAACGAATAACTATAGAGATCATTCCA 57.086 33.333 6.78 0.00 0.00 3.53
4116 4251 3.681835 ACTGACGTGGGAGGCGAC 61.682 66.667 0.00 0.00 0.00 5.19
4165 4305 1.972588 ATAAGCTCCACCTCCAACCT 58.027 50.000 0.00 0.00 0.00 3.50
4187 4328 7.796054 ACCTACATACATTCATTGCTAGAAGT 58.204 34.615 0.00 0.00 0.00 3.01
4215 4356 3.405831 TGTCGTTCTTCTCTTCCTCGTA 58.594 45.455 0.00 0.00 0.00 3.43
4223 4364 2.724454 TCTCTTCCTCGTACTTCCCTG 58.276 52.381 0.00 0.00 0.00 4.45
4233 4374 4.215908 TCGTACTTCCCTGCATCTTCTAT 58.784 43.478 0.00 0.00 0.00 1.98
4303 4444 5.708697 ACATCAACATCAGTGTGTTCATCAT 59.291 36.000 7.77 0.00 40.17 2.45
4307 4448 4.763073 ACATCAGTGTGTTCATCATCGAT 58.237 39.130 0.00 0.00 37.14 3.59
4309 4450 4.192429 TCAGTGTGTTCATCATCGATGT 57.808 40.909 24.09 9.70 40.55 3.06
4321 4462 6.814043 TCATCATCGATGTCTCATCTTCTTT 58.186 36.000 24.09 0.00 40.55 2.52
4334 4481 6.730977 TCTCATCTTCTTTTTCCTCCTTCCTA 59.269 38.462 0.00 0.00 0.00 2.94
4339 4486 3.655777 TCTTTTTCCTCCTTCCTAGCCAA 59.344 43.478 0.00 0.00 0.00 4.52
4350 4497 6.790319 TCCTTCCTAGCCAATTTTAGTTCTT 58.210 36.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 8.081633 TGGCATGAAGTTAACTTAATTTGACAG 58.918 33.333 20.58 7.34 36.11 3.51
277 322 0.036765 TGGCGGTAGGCTGTGTAAAG 60.037 55.000 0.00 0.00 44.18 1.85
281 326 3.706373 CCTGGCGGTAGGCTGTGT 61.706 66.667 0.00 0.00 44.18 3.72
282 327 4.473520 CCCTGGCGGTAGGCTGTG 62.474 72.222 0.00 0.00 44.18 3.66
312 357 2.367567 ACTGACACGTGGTAAATGGACT 59.632 45.455 21.57 0.00 0.00 3.85
332 377 1.145803 GTCTGGCAGTTAACGACCAC 58.854 55.000 15.27 6.66 0.00 4.16
336 381 1.373748 GGCGTCTGGCAGTTAACGA 60.374 57.895 25.53 0.00 46.16 3.85
338 383 3.165498 CGGCGTCTGGCAGTTAAC 58.835 61.111 15.27 4.49 46.16 2.01
388 468 1.366854 GCGGTAGCTTTACACAGGCC 61.367 60.000 0.00 0.00 41.01 5.19
393 473 0.743345 CCCTGGCGGTAGCTTTACAC 60.743 60.000 0.00 0.00 44.37 2.90
470 550 2.560981 CCCTTTTGCGGTCTAAATTGGT 59.439 45.455 0.00 0.00 0.00 3.67
483 563 2.570442 TCGTGTTTTGACCCTTTTGC 57.430 45.000 0.00 0.00 0.00 3.68
514 594 1.549170 GTGGTATATGAGCCCCTACGG 59.451 57.143 0.00 0.00 0.00 4.02
515 595 1.549170 GGTGGTATATGAGCCCCTACG 59.451 57.143 0.00 0.00 0.00 3.51
516 596 2.302157 GTGGTGGTATATGAGCCCCTAC 59.698 54.545 0.00 0.00 0.00 3.18
517 597 2.181419 AGTGGTGGTATATGAGCCCCTA 59.819 50.000 0.00 0.00 0.00 3.53
518 598 1.061346 AGTGGTGGTATATGAGCCCCT 60.061 52.381 0.00 0.00 0.00 4.79
519 599 1.348036 GAGTGGTGGTATATGAGCCCC 59.652 57.143 0.00 0.00 0.00 5.80
520 600 2.047061 TGAGTGGTGGTATATGAGCCC 58.953 52.381 0.00 0.00 0.00 5.19
521 601 2.224305 GGTGAGTGGTGGTATATGAGCC 60.224 54.545 0.00 0.00 0.00 4.70
522 602 2.434336 TGGTGAGTGGTGGTATATGAGC 59.566 50.000 0.00 0.00 0.00 4.26
523 603 3.181465 GGTGGTGAGTGGTGGTATATGAG 60.181 52.174 0.00 0.00 0.00 2.90
524 604 2.769663 GGTGGTGAGTGGTGGTATATGA 59.230 50.000 0.00 0.00 0.00 2.15
525 605 2.483013 CGGTGGTGAGTGGTGGTATATG 60.483 54.545 0.00 0.00 0.00 1.78
526 606 1.760613 CGGTGGTGAGTGGTGGTATAT 59.239 52.381 0.00 0.00 0.00 0.86
527 607 1.187974 CGGTGGTGAGTGGTGGTATA 58.812 55.000 0.00 0.00 0.00 1.47
528 608 0.834687 ACGGTGGTGAGTGGTGGTAT 60.835 55.000 0.00 0.00 0.00 2.73
529 609 1.458020 ACGGTGGTGAGTGGTGGTA 60.458 57.895 0.00 0.00 0.00 3.25
530 610 2.766651 ACGGTGGTGAGTGGTGGT 60.767 61.111 0.00 0.00 0.00 4.16
540 620 2.280592 GAAAGGACGCACGGTGGT 60.281 61.111 10.60 6.13 0.00 4.16
541 621 3.047877 GGAAAGGACGCACGGTGG 61.048 66.667 10.60 2.76 0.00 4.61
542 622 1.890041 TTGGAAAGGACGCACGGTG 60.890 57.895 3.15 3.15 0.00 4.94
543 623 1.890510 GTTGGAAAGGACGCACGGT 60.891 57.895 0.00 0.00 0.00 4.83
544 624 1.890041 TGTTGGAAAGGACGCACGG 60.890 57.895 0.00 0.00 0.00 4.94
545 625 1.278637 GTGTTGGAAAGGACGCACG 59.721 57.895 0.00 0.00 0.00 5.34
546 626 1.098712 TGGTGTTGGAAAGGACGCAC 61.099 55.000 0.00 0.00 0.00 5.34
547 627 0.394488 TTGGTGTTGGAAAGGACGCA 60.394 50.000 0.00 0.00 0.00 5.24
548 628 0.958822 ATTGGTGTTGGAAAGGACGC 59.041 50.000 0.00 0.00 0.00 5.19
549 629 4.732784 CATTATTGGTGTTGGAAAGGACG 58.267 43.478 0.00 0.00 0.00 4.79
550 630 4.220602 AGCATTATTGGTGTTGGAAAGGAC 59.779 41.667 0.00 0.00 30.87 3.85
551 631 4.415596 AGCATTATTGGTGTTGGAAAGGA 58.584 39.130 0.00 0.00 30.87 3.36
552 632 4.806640 AGCATTATTGGTGTTGGAAAGG 57.193 40.909 0.00 0.00 30.87 3.11
553 633 7.151308 TGTTTAGCATTATTGGTGTTGGAAAG 58.849 34.615 0.00 0.00 34.79 2.62
554 634 7.055667 TGTTTAGCATTATTGGTGTTGGAAA 57.944 32.000 0.00 0.00 34.79 3.13
555 635 6.656632 TGTTTAGCATTATTGGTGTTGGAA 57.343 33.333 0.00 0.00 34.79 3.53
556 636 6.849085 ATGTTTAGCATTATTGGTGTTGGA 57.151 33.333 0.00 0.00 33.14 3.53
557 637 7.542890 TGTATGTTTAGCATTATTGGTGTTGG 58.457 34.615 0.00 0.00 38.94 3.77
558 638 8.978564 TTGTATGTTTAGCATTATTGGTGTTG 57.021 30.769 0.00 0.00 38.94 3.33
559 639 9.638239 CTTTGTATGTTTAGCATTATTGGTGTT 57.362 29.630 0.00 0.00 38.94 3.32
560 640 8.250332 CCTTTGTATGTTTAGCATTATTGGTGT 58.750 33.333 0.00 0.00 38.94 4.16
561 641 8.250332 ACCTTTGTATGTTTAGCATTATTGGTG 58.750 33.333 0.00 0.00 38.94 4.17
562 642 8.361169 ACCTTTGTATGTTTAGCATTATTGGT 57.639 30.769 0.00 0.00 38.94 3.67
563 643 9.651913 AAACCTTTGTATGTTTAGCATTATTGG 57.348 29.630 0.00 0.00 38.94 3.16
568 648 9.638239 CATGTAAACCTTTGTATGTTTAGCATT 57.362 29.630 0.00 0.00 37.55 3.56
569 649 7.759433 GCATGTAAACCTTTGTATGTTTAGCAT 59.241 33.333 0.00 0.00 37.55 3.79
570 650 7.040062 AGCATGTAAACCTTTGTATGTTTAGCA 60.040 33.333 0.00 0.00 37.55 3.49
571 651 7.273381 CAGCATGTAAACCTTTGTATGTTTAGC 59.727 37.037 0.00 0.00 37.55 3.09
572 652 8.511321 TCAGCATGTAAACCTTTGTATGTTTAG 58.489 33.333 0.00 0.00 37.55 1.85
573 653 8.293867 GTCAGCATGTAAACCTTTGTATGTTTA 58.706 33.333 0.00 0.00 37.40 2.01
574 654 7.014230 AGTCAGCATGTAAACCTTTGTATGTTT 59.986 33.333 0.00 0.00 37.40 2.83
575 655 6.490040 AGTCAGCATGTAAACCTTTGTATGTT 59.510 34.615 0.00 0.00 37.40 2.71
576 656 6.003950 AGTCAGCATGTAAACCTTTGTATGT 58.996 36.000 0.00 0.00 37.40 2.29
577 657 6.500684 AGTCAGCATGTAAACCTTTGTATG 57.499 37.500 0.00 0.00 37.40 2.39
578 658 6.823689 CCTAGTCAGCATGTAAACCTTTGTAT 59.176 38.462 0.00 0.00 37.40 2.29
579 659 6.014070 TCCTAGTCAGCATGTAAACCTTTGTA 60.014 38.462 0.00 0.00 37.40 2.41
580 660 5.003804 CCTAGTCAGCATGTAAACCTTTGT 58.996 41.667 0.00 0.00 37.40 2.83
581 661 5.245531 TCCTAGTCAGCATGTAAACCTTTG 58.754 41.667 0.00 0.00 37.40 2.77
582 662 5.499004 TCCTAGTCAGCATGTAAACCTTT 57.501 39.130 0.00 0.00 37.40 3.11
583 663 5.700402 ATCCTAGTCAGCATGTAAACCTT 57.300 39.130 0.00 0.00 37.40 3.50
584 664 5.700402 AATCCTAGTCAGCATGTAAACCT 57.300 39.130 0.00 0.00 37.40 3.50
585 665 6.759497 AAAATCCTAGTCAGCATGTAAACC 57.241 37.500 0.00 0.00 37.40 3.27
606 686 6.774170 GGGGAGAGGTTAGTTAGTTTGAAAAA 59.226 38.462 0.00 0.00 0.00 1.94
607 687 6.102174 AGGGGAGAGGTTAGTTAGTTTGAAAA 59.898 38.462 0.00 0.00 0.00 2.29
608 688 5.609708 AGGGGAGAGGTTAGTTAGTTTGAAA 59.390 40.000 0.00 0.00 0.00 2.69
609 689 5.160386 AGGGGAGAGGTTAGTTAGTTTGAA 58.840 41.667 0.00 0.00 0.00 2.69
610 690 4.759953 AGGGGAGAGGTTAGTTAGTTTGA 58.240 43.478 0.00 0.00 0.00 2.69
611 691 4.778427 AGAGGGGAGAGGTTAGTTAGTTTG 59.222 45.833 0.00 0.00 0.00 2.93
612 692 4.778427 CAGAGGGGAGAGGTTAGTTAGTTT 59.222 45.833 0.00 0.00 0.00 2.66
613 693 4.045590 TCAGAGGGGAGAGGTTAGTTAGTT 59.954 45.833 0.00 0.00 0.00 2.24
614 694 3.596956 TCAGAGGGGAGAGGTTAGTTAGT 59.403 47.826 0.00 0.00 0.00 2.24
615 695 4.252570 TCAGAGGGGAGAGGTTAGTTAG 57.747 50.000 0.00 0.00 0.00 2.34
616 696 4.901785 ATCAGAGGGGAGAGGTTAGTTA 57.098 45.455 0.00 0.00 0.00 2.24
617 697 3.786213 ATCAGAGGGGAGAGGTTAGTT 57.214 47.619 0.00 0.00 0.00 2.24
618 698 3.786213 AATCAGAGGGGAGAGGTTAGT 57.214 47.619 0.00 0.00 0.00 2.24
619 699 5.443230 AAAAATCAGAGGGGAGAGGTTAG 57.557 43.478 0.00 0.00 0.00 2.34
620 700 6.126478 CCATAAAAATCAGAGGGGAGAGGTTA 60.126 42.308 0.00 0.00 0.00 2.85
621 701 5.340360 CCATAAAAATCAGAGGGGAGAGGTT 60.340 44.000 0.00 0.00 0.00 3.50
622 702 4.166919 CCATAAAAATCAGAGGGGAGAGGT 59.833 45.833 0.00 0.00 0.00 3.85
623 703 4.446889 CCCATAAAAATCAGAGGGGAGAGG 60.447 50.000 0.00 0.00 36.14 3.69
624 704 4.723309 CCCATAAAAATCAGAGGGGAGAG 58.277 47.826 0.00 0.00 36.14 3.20
625 705 4.796110 CCCATAAAAATCAGAGGGGAGA 57.204 45.455 0.00 0.00 36.14 3.71
629 709 3.299503 CACCCCCATAAAAATCAGAGGG 58.700 50.000 0.00 0.00 39.33 4.30
630 710 3.299503 CCACCCCCATAAAAATCAGAGG 58.700 50.000 0.00 0.00 0.00 3.69
631 711 3.299503 CCCACCCCCATAAAAATCAGAG 58.700 50.000 0.00 0.00 0.00 3.35
632 712 2.625617 GCCCACCCCCATAAAAATCAGA 60.626 50.000 0.00 0.00 0.00 3.27
633 713 1.762370 GCCCACCCCCATAAAAATCAG 59.238 52.381 0.00 0.00 0.00 2.90
634 714 1.364328 AGCCCACCCCCATAAAAATCA 59.636 47.619 0.00 0.00 0.00 2.57
635 715 2.039418 GAGCCCACCCCCATAAAAATC 58.961 52.381 0.00 0.00 0.00 2.17
636 716 1.343985 GGAGCCCACCCCCATAAAAAT 60.344 52.381 0.00 0.00 0.00 1.82
637 717 0.041982 GGAGCCCACCCCCATAAAAA 59.958 55.000 0.00 0.00 0.00 1.94
638 718 0.853586 AGGAGCCCACCCCCATAAAA 60.854 55.000 0.00 0.00 0.00 1.52
639 719 0.853586 AAGGAGCCCACCCCCATAAA 60.854 55.000 0.00 0.00 0.00 1.40
640 720 1.230482 AAGGAGCCCACCCCCATAA 60.230 57.895 0.00 0.00 0.00 1.90
641 721 1.696314 GAAGGAGCCCACCCCCATA 60.696 63.158 0.00 0.00 0.00 2.74
642 722 3.023735 GAAGGAGCCCACCCCCAT 61.024 66.667 0.00 0.00 0.00 4.00
643 723 4.285790 AGAAGGAGCCCACCCCCA 62.286 66.667 0.00 0.00 0.00 4.96
644 724 3.412408 GAGAAGGAGCCCACCCCC 61.412 72.222 0.00 0.00 0.00 5.40
645 725 3.412408 GGAGAAGGAGCCCACCCC 61.412 72.222 0.00 0.00 0.00 4.95
646 726 3.412408 GGGAGAAGGAGCCCACCC 61.412 72.222 0.00 0.00 44.07 4.61
650 730 3.203263 AGATTAAAAGGGAGAAGGAGCCC 59.797 47.826 0.00 0.00 45.04 5.19
651 731 4.511786 AGATTAAAAGGGAGAAGGAGCC 57.488 45.455 0.00 0.00 0.00 4.70
652 732 5.501156 TGAAGATTAAAAGGGAGAAGGAGC 58.499 41.667 0.00 0.00 0.00 4.70
653 733 7.831193 TGATTGAAGATTAAAAGGGAGAAGGAG 59.169 37.037 0.00 0.00 0.00 3.69
654 734 7.698912 TGATTGAAGATTAAAAGGGAGAAGGA 58.301 34.615 0.00 0.00 0.00 3.36
655 735 7.944729 TGATTGAAGATTAAAAGGGAGAAGG 57.055 36.000 0.00 0.00 0.00 3.46
657 737 9.981114 GTTTTGATTGAAGATTAAAAGGGAGAA 57.019 29.630 0.00 0.00 0.00 2.87
658 738 8.585018 GGTTTTGATTGAAGATTAAAAGGGAGA 58.415 33.333 0.00 0.00 0.00 3.71
659 739 8.367156 TGGTTTTGATTGAAGATTAAAAGGGAG 58.633 33.333 0.00 0.00 0.00 4.30
660 740 8.256356 TGGTTTTGATTGAAGATTAAAAGGGA 57.744 30.769 0.00 0.00 0.00 4.20
661 741 8.773645 GTTGGTTTTGATTGAAGATTAAAAGGG 58.226 33.333 0.00 0.00 0.00 3.95
662 742 8.773645 GGTTGGTTTTGATTGAAGATTAAAAGG 58.226 33.333 0.00 0.00 0.00 3.11
663 743 9.546428 AGGTTGGTTTTGATTGAAGATTAAAAG 57.454 29.630 0.00 0.00 0.00 2.27
664 744 9.898152 AAGGTTGGTTTTGATTGAAGATTAAAA 57.102 25.926 0.00 0.00 0.00 1.52
665 745 9.898152 AAAGGTTGGTTTTGATTGAAGATTAAA 57.102 25.926 0.00 0.00 0.00 1.52
668 748 9.492973 CATAAAGGTTGGTTTTGATTGAAGATT 57.507 29.630 0.00 0.00 0.00 2.40
669 749 8.650490 ACATAAAGGTTGGTTTTGATTGAAGAT 58.350 29.630 0.00 0.00 0.00 2.40
670 750 8.017418 ACATAAAGGTTGGTTTTGATTGAAGA 57.983 30.769 0.00 0.00 0.00 2.87
671 751 9.757227 TTACATAAAGGTTGGTTTTGATTGAAG 57.243 29.630 0.00 0.00 0.00 3.02
677 757 9.892130 ACATTTTTACATAAAGGTTGGTTTTGA 57.108 25.926 0.00 0.00 28.56 2.69
678 758 9.928236 CACATTTTTACATAAAGGTTGGTTTTG 57.072 29.630 0.00 0.00 30.40 2.44
679 759 9.674068 ACACATTTTTACATAAAGGTTGGTTTT 57.326 25.926 0.00 0.00 30.40 2.43
683 763 9.581099 GGATACACATTTTTACATAAAGGTTGG 57.419 33.333 0.00 0.00 30.40 3.77
692 772 9.855021 GCTACAAAAGGATACACATTTTTACAT 57.145 29.630 0.00 0.00 39.86 2.29
693 773 8.018520 CGCTACAAAAGGATACACATTTTTACA 58.981 33.333 0.00 0.00 39.86 2.41
694 774 8.019094 ACGCTACAAAAGGATACACATTTTTAC 58.981 33.333 0.00 0.00 39.86 2.01
695 775 8.018520 CACGCTACAAAAGGATACACATTTTTA 58.981 33.333 0.00 0.00 39.86 1.52
696 776 6.861055 CACGCTACAAAAGGATACACATTTTT 59.139 34.615 0.00 0.00 39.86 1.94
697 777 6.016610 ACACGCTACAAAAGGATACACATTTT 60.017 34.615 0.00 0.00 42.03 1.82
698 778 5.472137 ACACGCTACAAAAGGATACACATTT 59.528 36.000 0.00 0.00 41.41 2.32
699 779 5.001232 ACACGCTACAAAAGGATACACATT 58.999 37.500 0.00 0.00 41.41 2.71
700 780 4.575885 ACACGCTACAAAAGGATACACAT 58.424 39.130 0.00 0.00 41.41 3.21
701 781 3.997762 ACACGCTACAAAAGGATACACA 58.002 40.909 0.00 0.00 41.41 3.72
702 782 4.032558 GCTACACGCTACAAAAGGATACAC 59.967 45.833 0.00 0.00 35.18 2.90
703 783 4.178540 GCTACACGCTACAAAAGGATACA 58.821 43.478 0.00 0.00 35.18 2.29
704 784 4.178540 TGCTACACGCTACAAAAGGATAC 58.821 43.478 0.00 0.00 40.11 2.24
705 785 4.459390 TGCTACACGCTACAAAAGGATA 57.541 40.909 0.00 0.00 40.11 2.59
706 786 3.328382 TGCTACACGCTACAAAAGGAT 57.672 42.857 0.00 0.00 40.11 3.24
707 787 2.823924 TGCTACACGCTACAAAAGGA 57.176 45.000 0.00 0.00 40.11 3.36
708 788 3.747193 CAATGCTACACGCTACAAAAGG 58.253 45.455 0.00 0.00 40.11 3.11
709 789 3.120199 AGCAATGCTACACGCTACAAAAG 60.120 43.478 5.69 0.00 36.99 2.27
710 790 2.811431 AGCAATGCTACACGCTACAAAA 59.189 40.909 5.69 0.00 36.99 2.44
711 791 2.415168 GAGCAATGCTACACGCTACAAA 59.585 45.455 8.12 0.00 39.88 2.83
712 792 1.999735 GAGCAATGCTACACGCTACAA 59.000 47.619 8.12 0.00 39.88 2.41
713 793 1.204704 AGAGCAATGCTACACGCTACA 59.795 47.619 8.12 0.00 39.88 2.74
714 794 1.927895 AGAGCAATGCTACACGCTAC 58.072 50.000 8.12 0.00 39.88 3.58
715 795 2.540515 GAAGAGCAATGCTACACGCTA 58.459 47.619 8.12 0.00 39.88 4.26
716 796 1.363744 GAAGAGCAATGCTACACGCT 58.636 50.000 8.12 0.00 39.88 5.07
717 797 0.375106 GGAAGAGCAATGCTACACGC 59.625 55.000 8.12 0.00 39.88 5.34
718 798 1.725641 TGGAAGAGCAATGCTACACG 58.274 50.000 8.12 0.00 39.88 4.49
719 799 3.077359 AGTTGGAAGAGCAATGCTACAC 58.923 45.455 8.12 1.99 39.88 2.90
720 800 3.008375 AGAGTTGGAAGAGCAATGCTACA 59.992 43.478 8.12 2.34 39.88 2.74
721 801 3.604582 AGAGTTGGAAGAGCAATGCTAC 58.395 45.455 8.12 0.93 39.88 3.58
722 802 3.369892 GGAGAGTTGGAAGAGCAATGCTA 60.370 47.826 8.12 0.00 39.88 3.49
723 803 2.617532 GGAGAGTTGGAAGAGCAATGCT 60.618 50.000 7.79 7.79 43.88 3.79
724 804 1.742268 GGAGAGTTGGAAGAGCAATGC 59.258 52.381 0.00 0.00 0.00 3.56
725 805 3.008330 CTGGAGAGTTGGAAGAGCAATG 58.992 50.000 0.00 0.00 0.00 2.82
726 806 2.617532 GCTGGAGAGTTGGAAGAGCAAT 60.618 50.000 0.00 0.00 0.00 3.56
727 807 1.271054 GCTGGAGAGTTGGAAGAGCAA 60.271 52.381 0.00 0.00 0.00 3.91
728 808 0.322975 GCTGGAGAGTTGGAAGAGCA 59.677 55.000 0.00 0.00 0.00 4.26
729 809 0.392327 GGCTGGAGAGTTGGAAGAGC 60.392 60.000 0.00 0.00 0.00 4.09
730 810 0.979665 TGGCTGGAGAGTTGGAAGAG 59.020 55.000 0.00 0.00 0.00 2.85
731 811 1.556911 GATGGCTGGAGAGTTGGAAGA 59.443 52.381 0.00 0.00 0.00 2.87
732 812 1.407989 GGATGGCTGGAGAGTTGGAAG 60.408 57.143 0.00 0.00 0.00 3.46
733 813 0.620556 GGATGGCTGGAGAGTTGGAA 59.379 55.000 0.00 0.00 0.00 3.53
734 814 0.547471 TGGATGGCTGGAGAGTTGGA 60.547 55.000 0.00 0.00 0.00 3.53
735 815 0.107312 CTGGATGGCTGGAGAGTTGG 60.107 60.000 0.00 0.00 0.00 3.77
736 816 0.747283 GCTGGATGGCTGGAGAGTTG 60.747 60.000 0.00 0.00 0.00 3.16
737 817 1.606531 GCTGGATGGCTGGAGAGTT 59.393 57.895 0.00 0.00 0.00 3.01
738 818 2.373707 GGCTGGATGGCTGGAGAGT 61.374 63.158 0.00 0.00 38.32 3.24
739 819 1.706995 ATGGCTGGATGGCTGGAGAG 61.707 60.000 0.00 0.00 42.34 3.20
740 820 1.695239 ATGGCTGGATGGCTGGAGA 60.695 57.895 0.00 0.00 42.34 3.71
741 821 1.228184 GATGGCTGGATGGCTGGAG 60.228 63.158 0.00 0.00 42.34 3.86
742 822 1.358051 ATGATGGCTGGATGGCTGGA 61.358 55.000 0.00 0.00 42.34 3.86
743 823 0.894184 GATGATGGCTGGATGGCTGG 60.894 60.000 0.00 0.00 42.34 4.85
744 824 0.894184 GGATGATGGCTGGATGGCTG 60.894 60.000 0.00 0.00 42.34 4.85
745 825 1.358051 TGGATGATGGCTGGATGGCT 61.358 55.000 0.00 0.00 42.34 4.75
746 826 0.251653 ATGGATGATGGCTGGATGGC 60.252 55.000 0.00 0.00 42.18 4.40
747 827 2.719739 GTATGGATGATGGCTGGATGG 58.280 52.381 0.00 0.00 0.00 3.51
748 828 2.353323 CGTATGGATGATGGCTGGATG 58.647 52.381 0.00 0.00 0.00 3.51
749 829 1.280133 CCGTATGGATGATGGCTGGAT 59.720 52.381 0.00 0.00 37.49 3.41
750 830 0.686789 CCGTATGGATGATGGCTGGA 59.313 55.000 0.00 0.00 37.49 3.86
751 831 0.686789 TCCGTATGGATGATGGCTGG 59.313 55.000 0.00 0.00 40.17 4.85
752 832 1.338484 CCTCCGTATGGATGATGGCTG 60.338 57.143 3.55 0.00 45.33 4.85
753 833 0.979665 CCTCCGTATGGATGATGGCT 59.020 55.000 3.55 0.00 45.33 4.75
754 834 0.976641 TCCTCCGTATGGATGATGGC 59.023 55.000 3.55 0.00 45.33 4.40
755 835 3.769739 TTTCCTCCGTATGGATGATGG 57.230 47.619 9.50 5.36 45.33 3.51
756 836 5.008019 CACTTTTTCCTCCGTATGGATGATG 59.992 44.000 9.50 1.98 45.33 3.07
757 837 5.126067 CACTTTTTCCTCCGTATGGATGAT 58.874 41.667 9.50 0.00 45.33 2.45
758 838 4.513442 CACTTTTTCCTCCGTATGGATGA 58.487 43.478 3.55 4.33 45.33 2.92
759 839 3.065371 GCACTTTTTCCTCCGTATGGATG 59.935 47.826 3.55 1.55 45.33 3.51
760 840 3.279434 GCACTTTTTCCTCCGTATGGAT 58.721 45.455 3.55 0.00 45.33 3.41
761 841 2.039216 TGCACTTTTTCCTCCGTATGGA 59.961 45.455 3.02 3.02 43.88 3.41
762 842 2.420022 CTGCACTTTTTCCTCCGTATGG 59.580 50.000 0.00 0.00 0.00 2.74
763 843 2.159517 GCTGCACTTTTTCCTCCGTATG 60.160 50.000 0.00 0.00 0.00 2.39
764 844 2.084546 GCTGCACTTTTTCCTCCGTAT 58.915 47.619 0.00 0.00 0.00 3.06
765 845 1.071699 AGCTGCACTTTTTCCTCCGTA 59.928 47.619 1.02 0.00 0.00 4.02
766 846 0.179018 AGCTGCACTTTTTCCTCCGT 60.179 50.000 1.02 0.00 0.00 4.69
767 847 0.519077 GAGCTGCACTTTTTCCTCCG 59.481 55.000 1.02 0.00 0.00 4.63
768 848 0.884514 GGAGCTGCACTTTTTCCTCC 59.115 55.000 0.00 0.00 32.93 4.30
843 933 1.280457 GAGGAGAGGAATGTGTGGGT 58.720 55.000 0.00 0.00 0.00 4.51
844 934 0.543749 GGAGGAGAGGAATGTGTGGG 59.456 60.000 0.00 0.00 0.00 4.61
882 972 9.856162 TCTCTTTCTTTAACTTAGCCCTAAAAA 57.144 29.630 0.00 0.00 0.00 1.94
886 976 9.710818 TCTATCTCTTTCTTTAACTTAGCCCTA 57.289 33.333 0.00 0.00 0.00 3.53
887 977 8.611051 TCTATCTCTTTCTTTAACTTAGCCCT 57.389 34.615 0.00 0.00 0.00 5.19
888 978 9.320352 CTTCTATCTCTTTCTTTAACTTAGCCC 57.680 37.037 0.00 0.00 0.00 5.19
942 1032 2.388232 GGATTGGCGCGTTCGAACT 61.388 57.895 24.80 5.19 38.10 3.01
947 1037 3.861263 GGTCGGATTGGCGCGTTC 61.861 66.667 8.43 0.58 0.00 3.95
1012 1102 1.294659 GAGCAGAGCAAGTGTTCGGG 61.295 60.000 0.00 0.00 0.00 5.14
1118 1211 3.717294 GGTGGTGATGGCGAGGGT 61.717 66.667 0.00 0.00 0.00 4.34
1286 1382 1.005748 CAGCAGCGTCAGGTCAGAA 60.006 57.895 0.00 0.00 0.00 3.02
1289 1385 4.007644 CCCAGCAGCGTCAGGTCA 62.008 66.667 0.00 0.00 0.00 4.02
1430 1526 3.682292 GAACCTGGCGGCGAAGGAT 62.682 63.158 28.75 20.30 37.01 3.24
1639 1735 1.134788 CCATAGTGTCGAACTCCACCC 60.135 57.143 3.94 0.00 40.56 4.61
1640 1736 1.549170 ACCATAGTGTCGAACTCCACC 59.451 52.381 3.94 0.00 40.56 4.61
1655 1751 1.141019 GAGCTCGGCGTTGACCATA 59.859 57.895 6.85 0.00 0.00 2.74
1751 1847 0.528684 CGCTCTTGAGGACGATTCCC 60.529 60.000 0.00 0.00 44.10 3.97
1754 1850 1.153549 GCCGCTCTTGAGGACGATT 60.154 57.895 0.00 0.00 34.95 3.34
1842 1938 3.777925 CCGCTTCGGCTTGACACG 61.778 66.667 0.00 0.00 41.17 4.49
2078 2174 0.106015 ACCTTTTCTTGCTGGTGGCT 60.106 50.000 0.00 0.00 42.39 4.75
2148 2244 0.582005 GACACACAGGCGAAGAACAC 59.418 55.000 0.00 0.00 0.00 3.32
2207 2303 2.040884 AGCCCCGGCAGGAAGATA 60.041 61.111 3.68 0.00 44.88 1.98
3465 3568 7.094075 GGATCTGCTGAAAATGATAATATGGCA 60.094 37.037 0.00 0.00 0.00 4.92
3515 3618 0.409092 TCAATGAATGGGGGCACTGT 59.591 50.000 0.00 0.00 0.00 3.55
3528 3631 4.400251 GGACCAATGAGCTGATTTCAATGA 59.600 41.667 0.00 0.00 28.99 2.57
3529 3632 4.401519 AGGACCAATGAGCTGATTTCAATG 59.598 41.667 0.00 0.00 0.00 2.82
3544 3647 8.477419 TTTTCTTAATTTCAGACAGGACCAAT 57.523 30.769 0.00 0.00 0.00 3.16
3578 3681 9.007901 CCTGTAGAAATCATATCCTCCAAAATC 57.992 37.037 0.00 0.00 0.00 2.17
3610 3713 7.786030 TCATCTGTTATCTTACTCCAAGGAAG 58.214 38.462 0.00 0.00 34.76 3.46
3612 3715 7.733773 TTCATCTGTTATCTTACTCCAAGGA 57.266 36.000 0.00 0.00 34.76 3.36
3613 3716 8.834465 CAATTCATCTGTTATCTTACTCCAAGG 58.166 37.037 0.00 0.00 34.76 3.61
3614 3717 8.341173 GCAATTCATCTGTTATCTTACTCCAAG 58.659 37.037 0.00 0.00 35.38 3.61
3616 3719 7.568349 AGCAATTCATCTGTTATCTTACTCCA 58.432 34.615 0.00 0.00 0.00 3.86
3626 3729 9.890629 AAGTGTAAGATAGCAATTCATCTGTTA 57.109 29.630 0.00 0.00 31.87 2.41
3627 3730 8.798859 AAGTGTAAGATAGCAATTCATCTGTT 57.201 30.769 0.00 0.00 31.87 3.16
3628 3731 8.263640 AGAAGTGTAAGATAGCAATTCATCTGT 58.736 33.333 7.32 0.00 40.70 3.41
3629 3732 8.659925 AGAAGTGTAAGATAGCAATTCATCTG 57.340 34.615 7.32 0.00 40.70 2.90
3630 3733 9.678260 AAAGAAGTGTAAGATAGCAATTCATCT 57.322 29.630 7.32 0.00 40.70 2.90
3631 3734 9.713740 CAAAGAAGTGTAAGATAGCAATTCATC 57.286 33.333 7.32 0.00 40.70 2.92
3632 3735 9.453572 TCAAAGAAGTGTAAGATAGCAATTCAT 57.546 29.630 7.32 0.00 40.70 2.57
3633 3736 8.846943 TCAAAGAAGTGTAAGATAGCAATTCA 57.153 30.769 7.32 0.00 40.70 2.57
3646 3749 9.974980 GTCCCATAAAAATTTCAAAGAAGTGTA 57.025 29.630 0.00 0.00 0.00 2.90
3647 3750 7.651704 CGTCCCATAAAAATTTCAAAGAAGTGT 59.348 33.333 0.00 0.00 0.00 3.55
3648 3751 7.116233 CCGTCCCATAAAAATTTCAAAGAAGTG 59.884 37.037 0.00 0.00 0.00 3.16
3649 3752 7.151976 CCGTCCCATAAAAATTTCAAAGAAGT 58.848 34.615 0.00 0.00 0.00 3.01
3650 3753 6.589907 CCCGTCCCATAAAAATTTCAAAGAAG 59.410 38.462 0.00 0.00 0.00 2.85
3651 3754 6.042208 ACCCGTCCCATAAAAATTTCAAAGAA 59.958 34.615 0.00 0.00 0.00 2.52
3652 3755 5.540719 ACCCGTCCCATAAAAATTTCAAAGA 59.459 36.000 0.00 0.00 0.00 2.52
3653 3756 5.789521 ACCCGTCCCATAAAAATTTCAAAG 58.210 37.500 0.00 0.00 0.00 2.77
3654 3757 5.810080 ACCCGTCCCATAAAAATTTCAAA 57.190 34.783 0.00 0.00 0.00 2.69
3655 3758 5.810080 AACCCGTCCCATAAAAATTTCAA 57.190 34.783 0.00 0.00 0.00 2.69
3656 3759 7.483580 AATAACCCGTCCCATAAAAATTTCA 57.516 32.000 0.00 0.00 0.00 2.69
3657 3760 8.035984 TGAAATAACCCGTCCCATAAAAATTTC 58.964 33.333 0.00 0.00 32.77 2.17
3658 3761 7.820386 GTGAAATAACCCGTCCCATAAAAATTT 59.180 33.333 0.00 0.00 0.00 1.82
3659 3762 7.038941 TGTGAAATAACCCGTCCCATAAAAATT 60.039 33.333 0.00 0.00 0.00 1.82
3660 3763 6.437793 TGTGAAATAACCCGTCCCATAAAAAT 59.562 34.615 0.00 0.00 0.00 1.82
3661 3764 5.773680 TGTGAAATAACCCGTCCCATAAAAA 59.226 36.000 0.00 0.00 0.00 1.94
3662 3765 5.322754 TGTGAAATAACCCGTCCCATAAAA 58.677 37.500 0.00 0.00 0.00 1.52
3663 3766 4.919793 TGTGAAATAACCCGTCCCATAAA 58.080 39.130 0.00 0.00 0.00 1.40
3664 3767 4.225492 TCTGTGAAATAACCCGTCCCATAA 59.775 41.667 0.00 0.00 0.00 1.90
3665 3768 3.775866 TCTGTGAAATAACCCGTCCCATA 59.224 43.478 0.00 0.00 0.00 2.74
3666 3769 2.574369 TCTGTGAAATAACCCGTCCCAT 59.426 45.455 0.00 0.00 0.00 4.00
3667 3770 1.979308 TCTGTGAAATAACCCGTCCCA 59.021 47.619 0.00 0.00 0.00 4.37
3668 3771 2.773993 TCTGTGAAATAACCCGTCCC 57.226 50.000 0.00 0.00 0.00 4.46
3669 3772 5.638596 AATTTCTGTGAAATAACCCGTCC 57.361 39.130 6.04 0.00 0.00 4.79
3670 3773 7.142680 TCAAAATTTCTGTGAAATAACCCGTC 58.857 34.615 6.04 0.00 0.00 4.79
3671 3774 7.045126 TCAAAATTTCTGTGAAATAACCCGT 57.955 32.000 6.04 0.00 0.00 5.28
3672 3775 7.116233 CCTTCAAAATTTCTGTGAAATAACCCG 59.884 37.037 6.04 0.00 31.21 5.28
3673 3776 8.147704 TCCTTCAAAATTTCTGTGAAATAACCC 58.852 33.333 6.04 0.00 31.21 4.11
3674 3777 9.541143 TTCCTTCAAAATTTCTGTGAAATAACC 57.459 29.630 6.04 0.00 31.21 2.85
3678 3781 9.447157 TTTGTTCCTTCAAAATTTCTGTGAAAT 57.553 25.926 5.54 0.25 34.90 2.17
3679 3782 8.839310 TTTGTTCCTTCAAAATTTCTGTGAAA 57.161 26.923 5.54 0.00 34.90 2.69
3680 3783 8.716909 GTTTTGTTCCTTCAAAATTTCTGTGAA 58.283 29.630 7.64 4.24 45.01 3.18
3681 3784 7.875041 TGTTTTGTTCCTTCAAAATTTCTGTGA 59.125 29.630 7.64 0.00 45.01 3.58
3682 3785 8.027440 TGTTTTGTTCCTTCAAAATTTCTGTG 57.973 30.769 7.64 0.00 45.01 3.66
3683 3786 8.667463 CATGTTTTGTTCCTTCAAAATTTCTGT 58.333 29.630 7.64 0.00 45.01 3.41
3684 3787 8.881743 TCATGTTTTGTTCCTTCAAAATTTCTG 58.118 29.630 7.64 0.00 45.01 3.02
3685 3788 9.617523 ATCATGTTTTGTTCCTTCAAAATTTCT 57.382 25.926 7.64 0.00 45.01 2.52
3686 3789 9.654417 CATCATGTTTTGTTCCTTCAAAATTTC 57.346 29.630 7.64 0.00 45.01 2.17
3687 3790 9.176460 ACATCATGTTTTGTTCCTTCAAAATTT 57.824 25.926 7.64 0.00 45.01 1.82
3688 3791 8.735692 ACATCATGTTTTGTTCCTTCAAAATT 57.264 26.923 7.64 0.00 45.01 1.82
3689 3792 8.206189 AGACATCATGTTTTGTTCCTTCAAAAT 58.794 29.630 0.00 0.00 45.01 1.82
3690 3793 7.555087 AGACATCATGTTTTGTTCCTTCAAAA 58.445 30.769 0.00 0.00 42.50 2.44
3691 3794 7.111247 AGACATCATGTTTTGTTCCTTCAAA 57.889 32.000 0.00 0.00 35.83 2.69
3692 3795 6.320926 TGAGACATCATGTTTTGTTCCTTCAA 59.679 34.615 0.00 0.00 0.00 2.69
3693 3796 5.827267 TGAGACATCATGTTTTGTTCCTTCA 59.173 36.000 0.00 0.00 0.00 3.02
3694 3797 6.317789 TGAGACATCATGTTTTGTTCCTTC 57.682 37.500 0.00 0.00 0.00 3.46
3695 3798 6.906157 ATGAGACATCATGTTTTGTTCCTT 57.094 33.333 0.00 0.00 44.67 3.36
3708 3811 8.084073 GGAAGAAATTCAAAACATGAGACATCA 58.916 33.333 0.00 0.00 39.77 3.07
3709 3812 8.084073 TGGAAGAAATTCAAAACATGAGACATC 58.916 33.333 0.00 0.00 39.77 3.06
3710 3813 7.954835 TGGAAGAAATTCAAAACATGAGACAT 58.045 30.769 0.00 0.00 39.77 3.06
3711 3814 7.345422 TGGAAGAAATTCAAAACATGAGACA 57.655 32.000 0.00 0.00 39.77 3.41
3712 3815 7.869429 ACATGGAAGAAATTCAAAACATGAGAC 59.131 33.333 19.08 0.00 39.77 3.36
3713 3816 7.954835 ACATGGAAGAAATTCAAAACATGAGA 58.045 30.769 19.08 0.00 39.77 3.27
3714 3817 8.597662 AACATGGAAGAAATTCAAAACATGAG 57.402 30.769 19.08 3.18 39.77 2.90
3715 3818 8.828644 CAAACATGGAAGAAATTCAAAACATGA 58.171 29.630 19.08 0.00 38.19 3.07
3716 3819 8.614346 ACAAACATGGAAGAAATTCAAAACATG 58.386 29.630 13.99 13.99 40.04 3.21
3717 3820 8.735692 ACAAACATGGAAGAAATTCAAAACAT 57.264 26.923 0.00 0.00 0.00 2.71
3718 3821 9.658799 TTACAAACATGGAAGAAATTCAAAACA 57.341 25.926 0.00 0.00 0.00 2.83
3723 3826 9.103861 GGTTTTTACAAACATGGAAGAAATTCA 57.896 29.630 6.81 0.00 43.76 2.57
3724 3827 9.325198 AGGTTTTTACAAACATGGAAGAAATTC 57.675 29.630 6.81 0.00 43.76 2.17
3725 3828 9.325198 GAGGTTTTTACAAACATGGAAGAAATT 57.675 29.630 6.81 0.00 43.76 1.82
3726 3829 7.651704 CGAGGTTTTTACAAACATGGAAGAAAT 59.348 33.333 6.81 0.00 43.76 2.17
3727 3830 6.975772 CGAGGTTTTTACAAACATGGAAGAAA 59.024 34.615 6.81 0.00 43.76 2.52
3728 3831 6.500041 CGAGGTTTTTACAAACATGGAAGAA 58.500 36.000 6.81 0.00 43.76 2.52
3729 3832 5.506649 GCGAGGTTTTTACAAACATGGAAGA 60.507 40.000 6.81 0.00 43.76 2.87
3730 3833 4.679654 GCGAGGTTTTTACAAACATGGAAG 59.320 41.667 6.81 0.00 43.76 3.46
3731 3834 4.339814 AGCGAGGTTTTTACAAACATGGAA 59.660 37.500 6.81 0.00 43.76 3.53
3732 3835 3.886505 AGCGAGGTTTTTACAAACATGGA 59.113 39.130 6.81 0.00 43.76 3.41
3733 3836 4.237349 AGCGAGGTTTTTACAAACATGG 57.763 40.909 6.81 2.25 43.76 3.66
3734 3837 5.997385 ACTAGCGAGGTTTTTACAAACATG 58.003 37.500 6.81 0.00 43.76 3.21
3735 3838 5.761234 TGACTAGCGAGGTTTTTACAAACAT 59.239 36.000 6.81 0.00 43.76 2.71
3736 3839 5.006941 GTGACTAGCGAGGTTTTTACAAACA 59.993 40.000 6.81 0.00 43.76 2.83
3737 3840 5.235831 AGTGACTAGCGAGGTTTTTACAAAC 59.764 40.000 0.00 0.00 41.57 2.93
3738 3841 5.362263 AGTGACTAGCGAGGTTTTTACAAA 58.638 37.500 0.00 0.00 0.00 2.83
3739 3842 4.952460 AGTGACTAGCGAGGTTTTTACAA 58.048 39.130 0.00 0.00 0.00 2.41
3740 3843 4.553323 GAGTGACTAGCGAGGTTTTTACA 58.447 43.478 0.00 0.00 0.00 2.41
3741 3844 3.607209 CGAGTGACTAGCGAGGTTTTTAC 59.393 47.826 0.00 0.00 0.00 2.01
3742 3845 3.254166 ACGAGTGACTAGCGAGGTTTTTA 59.746 43.478 0.51 0.00 0.00 1.52
3743 3846 2.035576 ACGAGTGACTAGCGAGGTTTTT 59.964 45.455 0.51 0.00 0.00 1.94
3744 3847 1.612463 ACGAGTGACTAGCGAGGTTTT 59.388 47.619 0.51 0.00 0.00 2.43
3745 3848 1.245732 ACGAGTGACTAGCGAGGTTT 58.754 50.000 0.51 0.00 0.00 3.27
3746 3849 1.245732 AACGAGTGACTAGCGAGGTT 58.754 50.000 0.51 0.00 0.00 3.50
3747 3850 1.199558 GAAACGAGTGACTAGCGAGGT 59.800 52.381 0.51 0.00 0.00 3.85
3748 3851 1.199327 TGAAACGAGTGACTAGCGAGG 59.801 52.381 0.51 0.00 0.00 4.63
3749 3852 2.243407 GTGAAACGAGTGACTAGCGAG 58.757 52.381 0.51 0.00 0.00 5.03
3750 3853 1.068748 GGTGAAACGAGTGACTAGCGA 60.069 52.381 0.51 0.00 38.12 4.93
3751 3854 1.335597 TGGTGAAACGAGTGACTAGCG 60.336 52.381 0.00 0.00 38.12 4.26
3752 3855 2.329379 CTGGTGAAACGAGTGACTAGC 58.671 52.381 0.00 0.00 37.94 3.42
3753 3856 2.288213 TGCTGGTGAAACGAGTGACTAG 60.288 50.000 0.00 0.00 45.24 2.57
3754 3857 1.684450 TGCTGGTGAAACGAGTGACTA 59.316 47.619 0.00 0.00 45.24 2.59
3755 3858 0.464036 TGCTGGTGAAACGAGTGACT 59.536 50.000 0.00 0.00 45.24 3.41
3756 3859 1.512926 ATGCTGGTGAAACGAGTGAC 58.487 50.000 0.00 0.00 45.24 3.67
3757 3860 2.036604 TGTATGCTGGTGAAACGAGTGA 59.963 45.455 0.00 0.00 45.24 3.41
3758 3861 2.157668 GTGTATGCTGGTGAAACGAGTG 59.842 50.000 0.00 0.00 45.24 3.51
3759 3862 2.224185 TGTGTATGCTGGTGAAACGAGT 60.224 45.455 0.00 0.00 45.24 4.18
3760 3863 2.412870 TGTGTATGCTGGTGAAACGAG 58.587 47.619 0.00 0.00 46.32 4.18
3761 3864 2.535012 TGTGTATGCTGGTGAAACGA 57.465 45.000 0.00 0.00 38.12 3.85
3762 3865 2.741517 TGATGTGTATGCTGGTGAAACG 59.258 45.455 0.00 0.00 38.12 3.60
3763 3866 3.119849 GGTGATGTGTATGCTGGTGAAAC 60.120 47.826 0.00 0.00 0.00 2.78
3764 3867 3.081061 GGTGATGTGTATGCTGGTGAAA 58.919 45.455 0.00 0.00 0.00 2.69
3765 3868 2.039613 TGGTGATGTGTATGCTGGTGAA 59.960 45.455 0.00 0.00 0.00 3.18
3766 3869 1.627834 TGGTGATGTGTATGCTGGTGA 59.372 47.619 0.00 0.00 0.00 4.02
3767 3870 1.739466 GTGGTGATGTGTATGCTGGTG 59.261 52.381 0.00 0.00 0.00 4.17
3768 3871 1.630369 AGTGGTGATGTGTATGCTGGT 59.370 47.619 0.00 0.00 0.00 4.00
3769 3872 2.408271 AGTGGTGATGTGTATGCTGG 57.592 50.000 0.00 0.00 0.00 4.85
3770 3873 2.868583 GCTAGTGGTGATGTGTATGCTG 59.131 50.000 0.00 0.00 0.00 4.41
3771 3874 2.501316 TGCTAGTGGTGATGTGTATGCT 59.499 45.455 0.00 0.00 0.00 3.79
3772 3875 2.868583 CTGCTAGTGGTGATGTGTATGC 59.131 50.000 0.00 0.00 0.00 3.14
3773 3876 4.391405 TCTGCTAGTGGTGATGTGTATG 57.609 45.455 0.00 0.00 0.00 2.39
3774 3877 4.678044 CGTTCTGCTAGTGGTGATGTGTAT 60.678 45.833 0.00 0.00 0.00 2.29
3775 3878 3.366985 CGTTCTGCTAGTGGTGATGTGTA 60.367 47.826 0.00 0.00 0.00 2.90
3776 3879 2.610479 CGTTCTGCTAGTGGTGATGTGT 60.610 50.000 0.00 0.00 0.00 3.72
3777 3880 1.995484 CGTTCTGCTAGTGGTGATGTG 59.005 52.381 0.00 0.00 0.00 3.21
3778 3881 1.673033 GCGTTCTGCTAGTGGTGATGT 60.673 52.381 0.00 0.00 41.73 3.06
3779 3882 1.002366 GCGTTCTGCTAGTGGTGATG 58.998 55.000 0.00 0.00 41.73 3.07
3780 3883 0.608130 TGCGTTCTGCTAGTGGTGAT 59.392 50.000 0.00 0.00 46.63 3.06
3781 3884 0.608130 ATGCGTTCTGCTAGTGGTGA 59.392 50.000 0.00 0.00 46.63 4.02
3782 3885 0.723414 CATGCGTTCTGCTAGTGGTG 59.277 55.000 0.00 0.00 46.63 4.17
3783 3886 0.321671 ACATGCGTTCTGCTAGTGGT 59.678 50.000 0.00 0.00 46.63 4.16
3784 3887 0.723414 CACATGCGTTCTGCTAGTGG 59.277 55.000 0.00 0.00 46.63 4.00
3785 3888 0.095935 GCACATGCGTTCTGCTAGTG 59.904 55.000 0.00 7.55 46.63 2.74
3797 3900 1.665679 AGTACATAGCAACGCACATGC 59.334 47.619 0.00 0.00 44.15 4.06
3826 3931 3.670625 TGGACCCGTTTGTTGAAGATAG 58.329 45.455 0.00 0.00 0.00 2.08
3838 3943 5.986741 GTGAAATTTTTATGTTGGACCCGTT 59.013 36.000 0.00 0.00 0.00 4.44
3839 3944 5.534407 GTGAAATTTTTATGTTGGACCCGT 58.466 37.500 0.00 0.00 0.00 5.28
3840 3945 4.619336 CGTGAAATTTTTATGTTGGACCCG 59.381 41.667 0.00 0.00 0.00 5.28
3844 3949 6.364706 GTGCATCGTGAAATTTTTATGTTGGA 59.635 34.615 0.00 2.10 0.00 3.53
3845 3950 6.400940 GGTGCATCGTGAAATTTTTATGTTGG 60.401 38.462 0.00 0.00 0.00 3.77
3849 3954 6.949578 AAGGTGCATCGTGAAATTTTTATG 57.050 33.333 0.00 0.00 0.00 1.90
3851 3956 6.422400 GGAAAAGGTGCATCGTGAAATTTTTA 59.578 34.615 0.00 0.00 0.00 1.52
3858 3963 2.270352 AGGAAAAGGTGCATCGTGAA 57.730 45.000 0.00 0.00 0.00 3.18
3859 3964 2.270352 AAGGAAAAGGTGCATCGTGA 57.730 45.000 0.00 0.00 0.00 4.35
3871 3981 5.382616 GAGGGTCTGGTAGAAAAAGGAAAA 58.617 41.667 0.00 0.00 0.00 2.29
3914 4024 0.036875 AGAAATGCCCCGCTATAGCC 59.963 55.000 19.00 5.49 37.91 3.93
3939 4049 3.542648 GCGTTATTAAGGAAGGAGGCTT 58.457 45.455 0.42 0.00 0.00 4.35
3950 4060 2.093128 AGGTGAGGTGGGCGTTATTAAG 60.093 50.000 0.00 0.00 0.00 1.85
3955 4065 1.675219 GAAGGTGAGGTGGGCGTTA 59.325 57.895 0.00 0.00 0.00 3.18
3984 4101 4.264460 TGAAAAATTTCATCCCCGTTGG 57.736 40.909 4.52 0.00 41.88 3.77
4007 4126 9.969001 ATAGTATGTGTTAGTTTAAACCACCAT 57.031 29.630 14.72 16.32 0.00 3.55
4069 4204 4.440880 TGCAAAGTTGAATGGACCTTTTG 58.559 39.130 0.00 0.00 0.00 2.44
4070 4205 4.751767 TGCAAAGTTGAATGGACCTTTT 57.248 36.364 0.00 0.00 0.00 2.27
4116 4251 3.074412 AGAAATACGTTCAGGTTGCCAG 58.926 45.455 0.00 0.00 38.86 4.85
4187 4328 6.936279 AGGAAGAGAAGAACGACAATTATCA 58.064 36.000 0.00 0.00 0.00 2.15
4215 4356 5.707066 AGAAATAGAAGATGCAGGGAAGT 57.293 39.130 0.00 0.00 0.00 3.01
4223 4364 7.413644 GCAAAGAGGTTAGAAATAGAAGATGC 58.586 38.462 0.00 0.00 0.00 3.91
4233 4374 3.227614 GGGTTGGCAAAGAGGTTAGAAA 58.772 45.455 0.00 0.00 0.00 2.52
4266 4407 4.967084 TGTTGATGTGGTACTAGTTGGT 57.033 40.909 0.00 0.00 0.00 3.67
4303 4444 6.042638 AGGAAAAAGAAGATGAGACATCGA 57.957 37.500 0.00 0.00 0.00 3.59
4307 4448 5.832539 AGGAGGAAAAAGAAGATGAGACA 57.167 39.130 0.00 0.00 0.00 3.41
4309 4450 5.549619 AGGAAGGAGGAAAAAGAAGATGAGA 59.450 40.000 0.00 0.00 0.00 3.27
4321 4462 4.675063 AAATTGGCTAGGAAGGAGGAAA 57.325 40.909 0.00 0.00 0.00 3.13
4334 4481 7.004691 AGTAGGAACAAGAACTAAAATTGGCT 58.995 34.615 0.00 0.00 0.00 4.75
4405 4557 5.392811 CCATGATGTTGGAGAAGAAAAGAGC 60.393 44.000 0.00 0.00 39.25 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.