Multiple sequence alignment - TraesCS7D01G215500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G215500 | chr7D | 100.000 | 5378 | 0 | 0 | 1 | 5378 | 175640451 | 175645828 | 0.000000e+00 | 9932.0 |
1 | TraesCS7D01G215500 | chr7D | 79.500 | 400 | 56 | 11 | 2321 | 2717 | 17430844 | 17431220 | 1.490000e-65 | 261.0 |
2 | TraesCS7D01G215500 | chr7D | 82.278 | 316 | 42 | 6 | 2410 | 2724 | 571484978 | 571484676 | 1.490000e-65 | 261.0 |
3 | TraesCS7D01G215500 | chr7D | 82.979 | 141 | 20 | 4 | 454 | 591 | 34757005 | 34756866 | 2.030000e-24 | 124.0 |
4 | TraesCS7D01G215500 | chr7B | 91.471 | 2685 | 147 | 29 | 2720 | 5378 | 140928674 | 140931302 | 0.000000e+00 | 3615.0 |
5 | TraesCS7D01G215500 | chr7B | 92.746 | 2371 | 92 | 22 | 1 | 2331 | 140926344 | 140928674 | 0.000000e+00 | 3352.0 |
6 | TraesCS7D01G215500 | chr7A | 94.983 | 1754 | 47 | 17 | 597 | 2331 | 177323202 | 177324933 | 0.000000e+00 | 2713.0 |
7 | TraesCS7D01G215500 | chr7A | 94.277 | 1555 | 72 | 10 | 3833 | 5378 | 177326008 | 177327554 | 0.000000e+00 | 2362.0 |
8 | TraesCS7D01G215500 | chr7A | 97.135 | 1082 | 28 | 3 | 2720 | 3800 | 177324933 | 177326012 | 0.000000e+00 | 1823.0 |
9 | TraesCS7D01G215500 | chr7A | 92.883 | 281 | 18 | 2 | 318 | 597 | 177322649 | 177322928 | 1.800000e-109 | 407.0 |
10 | TraesCS7D01G215500 | chr7A | 89.254 | 335 | 21 | 2 | 1 | 327 | 177321901 | 177322228 | 6.490000e-109 | 405.0 |
11 | TraesCS7D01G215500 | chr7A | 82.957 | 399 | 53 | 11 | 2319 | 2713 | 719648429 | 719648816 | 3.990000e-91 | 346.0 |
12 | TraesCS7D01G215500 | chr7A | 79.688 | 320 | 37 | 12 | 2398 | 2717 | 411086582 | 411086291 | 7.060000e-49 | 206.0 |
13 | TraesCS7D01G215500 | chr3D | 93.464 | 306 | 18 | 2 | 2327 | 2632 | 571017166 | 571016863 | 2.280000e-123 | 453.0 |
14 | TraesCS7D01G215500 | chr4D | 86.250 | 400 | 45 | 4 | 2319 | 2717 | 429121484 | 429121874 | 4.980000e-115 | 425.0 |
15 | TraesCS7D01G215500 | chr4D | 82.993 | 294 | 41 | 6 | 2321 | 2614 | 399221000 | 399220716 | 1.920000e-64 | 257.0 |
16 | TraesCS7D01G215500 | chr4D | 83.230 | 161 | 21 | 3 | 2553 | 2713 | 92186676 | 92186830 | 5.610000e-30 | 143.0 |
17 | TraesCS7D01G215500 | chr2D | 86.579 | 380 | 41 | 4 | 2331 | 2709 | 648452941 | 648453311 | 1.390000e-110 | 411.0 |
18 | TraesCS7D01G215500 | chr2D | 84.615 | 130 | 17 | 3 | 463 | 591 | 555108723 | 555108596 | 5.650000e-25 | 126.0 |
19 | TraesCS7D01G215500 | chr6B | 85.500 | 400 | 48 | 3 | 2328 | 2726 | 444910607 | 444910997 | 5.010000e-110 | 409.0 |
20 | TraesCS7D01G215500 | chr6B | 85.974 | 385 | 45 | 2 | 2328 | 2712 | 444921487 | 444921862 | 2.330000e-108 | 403.0 |
21 | TraesCS7D01G215500 | chr6B | 91.935 | 62 | 3 | 2 | 2658 | 2717 | 679764887 | 679764948 | 9.600000e-13 | 86.1 |
22 | TraesCS7D01G215500 | chr4A | 80.998 | 421 | 66 | 9 | 2321 | 2737 | 56715603 | 56715193 | 6.720000e-84 | 322.0 |
23 | TraesCS7D01G215500 | chr4A | 86.923 | 130 | 16 | 1 | 463 | 591 | 514080141 | 514080012 | 1.560000e-30 | 145.0 |
24 | TraesCS7D01G215500 | chr3B | 79.218 | 409 | 49 | 15 | 1656 | 2044 | 640692001 | 640692393 | 8.940000e-63 | 252.0 |
25 | TraesCS7D01G215500 | chr1A | 79.310 | 319 | 35 | 13 | 2401 | 2717 | 352320890 | 352320601 | 1.530000e-45 | 195.0 |
26 | TraesCS7D01G215500 | chr1A | 85.859 | 99 | 12 | 2 | 5131 | 5229 | 456939726 | 456939822 | 2.650000e-18 | 104.0 |
27 | TraesCS7D01G215500 | chr1A | 85.714 | 63 | 3 | 3 | 5175 | 5231 | 557964558 | 557964496 | 1.620000e-05 | 62.1 |
28 | TraesCS7D01G215500 | chr5D | 80.508 | 236 | 19 | 9 | 2481 | 2715 | 264065397 | 264065606 | 7.210000e-34 | 156.0 |
29 | TraesCS7D01G215500 | chr5D | 85.496 | 131 | 17 | 2 | 463 | 593 | 535006240 | 535006368 | 9.400000e-28 | 135.0 |
30 | TraesCS7D01G215500 | chr4B | 83.951 | 162 | 18 | 5 | 2553 | 2713 | 128536020 | 128536174 | 1.210000e-31 | 148.0 |
31 | TraesCS7D01G215500 | chr6D | 84.058 | 138 | 20 | 2 | 463 | 599 | 256728473 | 256728609 | 1.220000e-26 | 132.0 |
32 | TraesCS7D01G215500 | chr6D | 84.058 | 138 | 20 | 2 | 463 | 599 | 256729270 | 256729406 | 1.220000e-26 | 132.0 |
33 | TraesCS7D01G215500 | chr6D | 84.091 | 132 | 19 | 2 | 463 | 592 | 349988457 | 349988588 | 5.650000e-25 | 126.0 |
34 | TraesCS7D01G215500 | chr2A | 84.211 | 133 | 21 | 0 | 2585 | 2717 | 71216407 | 71216275 | 4.370000e-26 | 130.0 |
35 | TraesCS7D01G215500 | chr1B | 84.946 | 93 | 11 | 3 | 5140 | 5229 | 478720833 | 478720925 | 2.060000e-14 | 91.6 |
36 | TraesCS7D01G215500 | chr2B | 84.706 | 85 | 12 | 1 | 5128 | 5211 | 32632008 | 32631924 | 3.450000e-12 | 84.2 |
37 | TraesCS7D01G215500 | chr5B | 87.143 | 70 | 5 | 3 | 2652 | 2721 | 609093263 | 609093198 | 5.780000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G215500 | chr7D | 175640451 | 175645828 | 5377 | False | 9932.0 | 9932 | 100.0000 | 1 | 5378 | 1 | chr7D.!!$F2 | 5377 |
1 | TraesCS7D01G215500 | chr7B | 140926344 | 140931302 | 4958 | False | 3483.5 | 3615 | 92.1085 | 1 | 5378 | 2 | chr7B.!!$F1 | 5377 |
2 | TraesCS7D01G215500 | chr7A | 177321901 | 177327554 | 5653 | False | 1542.0 | 2713 | 93.7064 | 1 | 5378 | 5 | chr7A.!!$F2 | 5377 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
819 | 1550 | 1.743995 | CCGGTCGGAATCAACACCC | 60.744 | 63.158 | 2.83 | 0.00 | 37.50 | 4.61 | F |
2363 | 3130 | 0.515127 | CGTGCGTTGCAACAGGAATA | 59.485 | 50.000 | 28.01 | 5.49 | 41.47 | 1.75 | F |
2671 | 3438 | 0.766131 | TGTAAGGAAGGTTGGCCGAA | 59.234 | 50.000 | 0.00 | 0.00 | 40.50 | 4.30 | F |
3324 | 4108 | 1.071471 | CTGTGGCCCTGTTCTCGTT | 59.929 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2665 | 3432 | 0.253327 | ATTTCACCTCTCCTTCGGCC | 59.747 | 55.000 | 0.0 | 0.0 | 0.0 | 6.13 | R |
3293 | 4077 | 0.249031 | GCCACAGTTCAGTTTGCACC | 60.249 | 55.000 | 0.0 | 0.0 | 0.0 | 5.01 | R |
4131 | 4915 | 1.871039 | TGTTGAAGTTTCCGTAGCAGC | 59.129 | 47.619 | 0.0 | 0.0 | 0.0 | 5.25 | R |
5056 | 5840 | 0.449388 | CTGGGCGACTTTTCATGAGC | 59.551 | 55.000 | 0.0 | 0.0 | 0.0 | 4.26 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
110 | 119 | 2.304180 | GCCATGGATCAGGTAGCTACAT | 59.696 | 50.000 | 24.75 | 16.12 | 0.00 | 2.29 |
160 | 169 | 6.016192 | CAGGTAGCCGAGATTGACTCTTTATA | 60.016 | 42.308 | 0.00 | 0.00 | 42.92 | 0.98 |
195 | 204 | 7.391833 | GTCTCCTTTCATTTCCACTACTTCATT | 59.608 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
330 | 769 | 8.672815 | TCTTGAAATTGAACGTTATGATATGCA | 58.327 | 29.630 | 0.00 | 0.00 | 0.00 | 3.96 |
409 | 848 | 3.186409 | CGAAATGTGTGTGGTGTTCTAGG | 59.814 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
474 | 913 | 9.614792 | GTCCCTACACATTTAGATGTTCTATTT | 57.385 | 33.333 | 0.00 | 0.00 | 43.92 | 1.40 |
683 | 1408 | 2.064434 | TCCACTTGCATGAACCACAA | 57.936 | 45.000 | 6.60 | 0.00 | 0.00 | 3.33 |
799 | 1526 | 1.798813 | CAAGAAGCCTCGTAAAAGCGT | 59.201 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
819 | 1550 | 1.743995 | CCGGTCGGAATCAACACCC | 60.744 | 63.158 | 2.83 | 0.00 | 37.50 | 4.61 |
998 | 1729 | 4.668289 | TCGGTTTGAAAAGAGACAAAAGC | 58.332 | 39.130 | 0.00 | 0.00 | 37.66 | 3.51 |
999 | 1730 | 4.156922 | TCGGTTTGAAAAGAGACAAAAGCA | 59.843 | 37.500 | 0.00 | 0.00 | 37.66 | 3.91 |
1141 | 1872 | 4.457496 | CCCTCATGGTGAGCGCGT | 62.457 | 66.667 | 8.43 | 0.00 | 42.98 | 6.01 |
1209 | 1940 | 1.600058 | TGGAGGGATTTCATGCTCCT | 58.400 | 50.000 | 13.77 | 4.64 | 32.63 | 3.69 |
1243 | 1974 | 5.063564 | GCTTGTAGATTCGGGTTGTTCTAAG | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 2.18 |
1463 | 2196 | 5.220989 | GGTTTCCCTGTGTACTTTTCTGAAC | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1494 | 2227 | 1.673033 | GGAGTGGTTCAGATGTCGTGG | 60.673 | 57.143 | 0.00 | 0.00 | 0.00 | 4.94 |
1508 | 2241 | 2.292267 | GTCGTGGTTCGGTAGATAGGA | 58.708 | 52.381 | 0.00 | 0.00 | 40.32 | 2.94 |
1556 | 2290 | 6.183360 | GGAATTTCATTGTCATTGCATGGTTC | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 3.62 |
1592 | 2337 | 2.664085 | CGCAAGTTTGTCGGTTTTTGTT | 59.336 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
1593 | 2338 | 3.852536 | CGCAAGTTTGTCGGTTTTTGTTA | 59.147 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
1594 | 2339 | 4.323868 | CGCAAGTTTGTCGGTTTTTGTTAA | 59.676 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
1595 | 2340 | 5.497911 | CGCAAGTTTGTCGGTTTTTGTTAAG | 60.498 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1596 | 2341 | 5.346551 | GCAAGTTTGTCGGTTTTTGTTAAGT | 59.653 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1597 | 2342 | 6.128769 | GCAAGTTTGTCGGTTTTTGTTAAGTT | 60.129 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
1598 | 2343 | 7.569774 | GCAAGTTTGTCGGTTTTTGTTAAGTTT | 60.570 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1599 | 2344 | 7.949903 | AGTTTGTCGGTTTTTGTTAAGTTTT | 57.050 | 28.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1600 | 2345 | 8.367943 | AGTTTGTCGGTTTTTGTTAAGTTTTT | 57.632 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
1601 | 2346 | 8.277018 | AGTTTGTCGGTTTTTGTTAAGTTTTTG | 58.723 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
1602 | 2347 | 7.710766 | TTGTCGGTTTTTGTTAAGTTTTTGT | 57.289 | 28.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1672 | 2417 | 3.955771 | TGAGCTTTTGTAACGGTGAAC | 57.044 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
1682 | 2427 | 2.358125 | CGGTGAACGTGGGATGCA | 60.358 | 61.111 | 0.00 | 0.00 | 37.93 | 3.96 |
1810 | 2555 | 3.609853 | TGATTCAAATGGAGAGAACGGG | 58.390 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
2035 | 2780 | 4.871993 | AGAAGCTTTGATCAAGTATGCG | 57.128 | 40.909 | 8.41 | 0.00 | 34.56 | 4.73 |
2348 | 3115 | 5.744666 | TTAAACTAGATAATTGCCCGTGC | 57.255 | 39.130 | 0.00 | 0.00 | 38.26 | 5.34 |
2349 | 3116 | 1.865865 | ACTAGATAATTGCCCGTGCG | 58.134 | 50.000 | 0.00 | 0.00 | 41.78 | 5.34 |
2350 | 3117 | 1.138266 | ACTAGATAATTGCCCGTGCGT | 59.862 | 47.619 | 0.00 | 0.00 | 41.78 | 5.24 |
2351 | 3118 | 2.210116 | CTAGATAATTGCCCGTGCGTT | 58.790 | 47.619 | 0.00 | 0.00 | 41.78 | 4.84 |
2352 | 3119 | 0.732571 | AGATAATTGCCCGTGCGTTG | 59.267 | 50.000 | 0.00 | 0.00 | 41.78 | 4.10 |
2353 | 3120 | 0.865639 | GATAATTGCCCGTGCGTTGC | 60.866 | 55.000 | 0.00 | 0.00 | 41.78 | 4.17 |
2354 | 3121 | 1.590610 | ATAATTGCCCGTGCGTTGCA | 61.591 | 50.000 | 2.68 | 2.68 | 41.78 | 4.08 |
2356 | 3123 | 3.839642 | ATTGCCCGTGCGTTGCAAC | 62.840 | 57.895 | 19.89 | 19.89 | 46.60 | 4.17 |
2358 | 3125 | 4.980903 | GCCCGTGCGTTGCAACAG | 62.981 | 66.667 | 28.01 | 20.60 | 41.47 | 3.16 |
2359 | 3126 | 4.326766 | CCCGTGCGTTGCAACAGG | 62.327 | 66.667 | 28.01 | 22.31 | 41.47 | 4.00 |
2360 | 3127 | 3.276091 | CCGTGCGTTGCAACAGGA | 61.276 | 61.111 | 28.01 | 18.68 | 41.47 | 3.86 |
2361 | 3128 | 2.712539 | CGTGCGTTGCAACAGGAA | 59.287 | 55.556 | 28.01 | 5.70 | 41.47 | 3.36 |
2362 | 3129 | 1.282570 | CGTGCGTTGCAACAGGAAT | 59.717 | 52.632 | 28.01 | 0.00 | 41.47 | 3.01 |
2363 | 3130 | 0.515127 | CGTGCGTTGCAACAGGAATA | 59.485 | 50.000 | 28.01 | 5.49 | 41.47 | 1.75 |
2364 | 3131 | 1.130373 | CGTGCGTTGCAACAGGAATAT | 59.870 | 47.619 | 28.01 | 0.00 | 41.47 | 1.28 |
2365 | 3132 | 2.350192 | CGTGCGTTGCAACAGGAATATA | 59.650 | 45.455 | 28.01 | 3.12 | 41.47 | 0.86 |
2366 | 3133 | 3.181515 | CGTGCGTTGCAACAGGAATATAA | 60.182 | 43.478 | 28.01 | 0.84 | 41.47 | 0.98 |
2367 | 3134 | 4.670478 | CGTGCGTTGCAACAGGAATATAAA | 60.670 | 41.667 | 28.01 | 0.00 | 41.47 | 1.40 |
2368 | 3135 | 4.557301 | GTGCGTTGCAACAGGAATATAAAC | 59.443 | 41.667 | 28.01 | 7.60 | 41.47 | 2.01 |
2369 | 3136 | 4.216472 | TGCGTTGCAACAGGAATATAAACA | 59.784 | 37.500 | 28.01 | 8.80 | 34.76 | 2.83 |
2370 | 3137 | 5.105957 | TGCGTTGCAACAGGAATATAAACAT | 60.106 | 36.000 | 28.01 | 0.00 | 34.76 | 2.71 |
2371 | 3138 | 5.804979 | GCGTTGCAACAGGAATATAAACATT | 59.195 | 36.000 | 28.01 | 0.00 | 0.00 | 2.71 |
2372 | 3139 | 6.020678 | GCGTTGCAACAGGAATATAAACATTC | 60.021 | 38.462 | 28.01 | 0.00 | 34.71 | 2.67 |
2373 | 3140 | 7.250569 | CGTTGCAACAGGAATATAAACATTCT | 58.749 | 34.615 | 28.01 | 0.00 | 35.61 | 2.40 |
2374 | 3141 | 8.394877 | CGTTGCAACAGGAATATAAACATTCTA | 58.605 | 33.333 | 28.01 | 0.00 | 35.61 | 2.10 |
2391 | 3158 | 9.490379 | AAACATTCTAATAGATTATCCCGTGAC | 57.510 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
2392 | 3159 | 8.423906 | ACATTCTAATAGATTATCCCGTGACT | 57.576 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2393 | 3160 | 8.307483 | ACATTCTAATAGATTATCCCGTGACTG | 58.693 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2394 | 3161 | 7.834881 | TTCTAATAGATTATCCCGTGACTGT | 57.165 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2395 | 3162 | 8.929260 | TTCTAATAGATTATCCCGTGACTGTA | 57.071 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
2396 | 3163 | 8.332996 | TCTAATAGATTATCCCGTGACTGTAC | 57.667 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2397 | 3164 | 3.984508 | AGATTATCCCGTGACTGTACG | 57.015 | 47.619 | 0.00 | 0.00 | 43.35 | 3.67 |
2398 | 3165 | 3.285484 | AGATTATCCCGTGACTGTACGT | 58.715 | 45.455 | 0.00 | 0.00 | 42.24 | 3.57 |
2399 | 3166 | 3.314635 | AGATTATCCCGTGACTGTACGTC | 59.685 | 47.826 | 0.00 | 9.87 | 42.24 | 4.34 |
2400 | 3167 | 2.408271 | TATCCCGTGACTGTACGTCT | 57.592 | 50.000 | 15.47 | 1.77 | 43.25 | 4.18 |
2401 | 3168 | 2.408271 | ATCCCGTGACTGTACGTCTA | 57.592 | 50.000 | 15.47 | 3.87 | 43.25 | 2.59 |
2402 | 3169 | 2.408271 | TCCCGTGACTGTACGTCTAT | 57.592 | 50.000 | 15.47 | 0.00 | 43.25 | 1.98 |
2403 | 3170 | 2.715046 | TCCCGTGACTGTACGTCTATT | 58.285 | 47.619 | 15.47 | 0.00 | 43.25 | 1.73 |
2404 | 3171 | 3.872696 | TCCCGTGACTGTACGTCTATTA | 58.127 | 45.455 | 15.47 | 0.00 | 43.25 | 0.98 |
2405 | 3172 | 4.454678 | TCCCGTGACTGTACGTCTATTAT | 58.545 | 43.478 | 15.47 | 0.00 | 43.25 | 1.28 |
2406 | 3173 | 4.883585 | TCCCGTGACTGTACGTCTATTATT | 59.116 | 41.667 | 15.47 | 0.00 | 43.25 | 1.40 |
2407 | 3174 | 6.054941 | TCCCGTGACTGTACGTCTATTATTA | 58.945 | 40.000 | 15.47 | 0.00 | 43.25 | 0.98 |
2408 | 3175 | 6.017934 | TCCCGTGACTGTACGTCTATTATTAC | 60.018 | 42.308 | 15.47 | 6.06 | 43.25 | 1.89 |
2409 | 3176 | 6.238456 | CCCGTGACTGTACGTCTATTATTACA | 60.238 | 42.308 | 15.47 | 0.00 | 43.25 | 2.41 |
2410 | 3177 | 7.358066 | CCGTGACTGTACGTCTATTATTACAT | 58.642 | 38.462 | 15.47 | 0.00 | 43.25 | 2.29 |
2411 | 3178 | 7.859377 | CCGTGACTGTACGTCTATTATTACATT | 59.141 | 37.037 | 15.47 | 0.00 | 43.25 | 2.71 |
2412 | 3179 | 8.679385 | CGTGACTGTACGTCTATTATTACATTG | 58.321 | 37.037 | 15.47 | 0.00 | 43.25 | 2.82 |
2413 | 3180 | 9.726232 | GTGACTGTACGTCTATTATTACATTGA | 57.274 | 33.333 | 15.47 | 0.00 | 43.25 | 2.57 |
2416 | 3183 | 9.193133 | ACTGTACGTCTATTATTACATTGATGC | 57.807 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
2417 | 3184 | 8.222984 | TGTACGTCTATTATTACATTGATGCG | 57.777 | 34.615 | 0.00 | 0.00 | 0.00 | 4.73 |
2418 | 3185 | 6.153212 | ACGTCTATTATTACATTGATGCGC | 57.847 | 37.500 | 0.00 | 0.00 | 0.00 | 6.09 |
2419 | 3186 | 5.926542 | ACGTCTATTATTACATTGATGCGCT | 59.073 | 36.000 | 9.73 | 0.00 | 0.00 | 5.92 |
2420 | 3187 | 7.088272 | ACGTCTATTATTACATTGATGCGCTA | 58.912 | 34.615 | 9.73 | 0.00 | 0.00 | 4.26 |
2421 | 3188 | 7.597369 | ACGTCTATTATTACATTGATGCGCTAA | 59.403 | 33.333 | 9.73 | 1.37 | 0.00 | 3.09 |
2422 | 3189 | 8.432359 | CGTCTATTATTACATTGATGCGCTAAA | 58.568 | 33.333 | 9.73 | 0.00 | 0.00 | 1.85 |
2449 | 3216 | 8.172159 | TCTTAGCAAATTTTTGTATGCAATCG | 57.828 | 30.769 | 0.00 | 0.00 | 41.18 | 3.34 |
2450 | 3217 | 5.207305 | AGCAAATTTTTGTATGCAATCGC | 57.793 | 34.783 | 0.00 | 0.00 | 41.18 | 4.58 |
2451 | 3218 | 4.093261 | AGCAAATTTTTGTATGCAATCGCC | 59.907 | 37.500 | 0.00 | 0.00 | 41.18 | 5.54 |
2452 | 3219 | 4.142945 | GCAAATTTTTGTATGCAATCGCCA | 60.143 | 37.500 | 0.00 | 0.00 | 40.24 | 5.69 |
2453 | 3220 | 5.616424 | GCAAATTTTTGTATGCAATCGCCAA | 60.616 | 36.000 | 0.00 | 0.00 | 40.24 | 4.52 |
2454 | 3221 | 6.544622 | CAAATTTTTGTATGCAATCGCCAAT | 58.455 | 32.000 | 0.00 | 0.00 | 34.18 | 3.16 |
2455 | 3222 | 7.675870 | GCAAATTTTTGTATGCAATCGCCAATA | 60.676 | 33.333 | 0.00 | 0.00 | 40.24 | 1.90 |
2456 | 3223 | 8.336806 | CAAATTTTTGTATGCAATCGCCAATAT | 58.663 | 29.630 | 0.00 | 0.00 | 34.18 | 1.28 |
2457 | 3224 | 8.436046 | AATTTTTGTATGCAATCGCCAATATT | 57.564 | 26.923 | 0.00 | 0.00 | 37.32 | 1.28 |
2458 | 3225 | 7.840342 | TTTTTGTATGCAATCGCCAATATTT | 57.160 | 28.000 | 0.00 | 0.00 | 37.32 | 1.40 |
2459 | 3226 | 8.932945 | TTTTTGTATGCAATCGCCAATATTTA | 57.067 | 26.923 | 0.00 | 0.00 | 37.32 | 1.40 |
2460 | 3227 | 7.922505 | TTTGTATGCAATCGCCAATATTTAC | 57.077 | 32.000 | 0.00 | 0.00 | 37.32 | 2.01 |
2461 | 3228 | 6.007936 | TGTATGCAATCGCCAATATTTACC | 57.992 | 37.500 | 0.00 | 0.00 | 37.32 | 2.85 |
2462 | 3229 | 5.767665 | TGTATGCAATCGCCAATATTTACCT | 59.232 | 36.000 | 0.00 | 0.00 | 37.32 | 3.08 |
2463 | 3230 | 4.566545 | TGCAATCGCCAATATTTACCTG | 57.433 | 40.909 | 0.00 | 0.00 | 37.32 | 4.00 |
2464 | 3231 | 3.243367 | TGCAATCGCCAATATTTACCTGC | 60.243 | 43.478 | 0.00 | 0.00 | 37.32 | 4.85 |
2465 | 3232 | 3.857010 | GCAATCGCCAATATTTACCTGCC | 60.857 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
2466 | 3233 | 2.719531 | TCGCCAATATTTACCTGCCA | 57.280 | 45.000 | 0.00 | 0.00 | 0.00 | 4.92 |
2467 | 3234 | 3.222173 | TCGCCAATATTTACCTGCCAT | 57.778 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
2468 | 3235 | 3.146066 | TCGCCAATATTTACCTGCCATC | 58.854 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
2469 | 3236 | 3.149196 | CGCCAATATTTACCTGCCATCT | 58.851 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2470 | 3237 | 3.569701 | CGCCAATATTTACCTGCCATCTT | 59.430 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
2471 | 3238 | 4.759693 | CGCCAATATTTACCTGCCATCTTA | 59.240 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
2472 | 3239 | 5.415701 | CGCCAATATTTACCTGCCATCTTAT | 59.584 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2473 | 3240 | 6.071952 | CGCCAATATTTACCTGCCATCTTATT | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
2474 | 3241 | 7.092716 | GCCAATATTTACCTGCCATCTTATTG | 58.907 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
2475 | 3242 | 7.605449 | CCAATATTTACCTGCCATCTTATTGG | 58.395 | 38.462 | 0.00 | 0.00 | 38.73 | 3.16 |
2476 | 3243 | 7.233348 | CCAATATTTACCTGCCATCTTATTGGT | 59.767 | 37.037 | 9.24 | 0.00 | 39.46 | 3.67 |
2477 | 3244 | 9.295825 | CAATATTTACCTGCCATCTTATTGGTA | 57.704 | 33.333 | 0.00 | 0.00 | 39.11 | 3.25 |
2478 | 3245 | 9.875708 | AATATTTACCTGCCATCTTATTGGTAA | 57.124 | 29.630 | 0.00 | 0.00 | 39.11 | 2.85 |
2479 | 3246 | 7.582667 | ATTTACCTGCCATCTTATTGGTAAC | 57.417 | 36.000 | 0.00 | 0.00 | 39.02 | 2.50 |
2480 | 3247 | 3.898482 | ACCTGCCATCTTATTGGTAACC | 58.102 | 45.455 | 0.00 | 0.00 | 39.11 | 2.85 |
2481 | 3248 | 3.268334 | ACCTGCCATCTTATTGGTAACCA | 59.732 | 43.478 | 0.00 | 0.00 | 39.11 | 3.67 |
2482 | 3249 | 3.632145 | CCTGCCATCTTATTGGTAACCAC | 59.368 | 47.826 | 0.00 | 0.00 | 39.11 | 4.16 |
2483 | 3250 | 4.526970 | CTGCCATCTTATTGGTAACCACT | 58.473 | 43.478 | 0.00 | 0.00 | 39.11 | 4.00 |
2484 | 3251 | 4.929479 | TGCCATCTTATTGGTAACCACTT | 58.071 | 39.130 | 0.00 | 0.00 | 39.11 | 3.16 |
2485 | 3252 | 6.068461 | TGCCATCTTATTGGTAACCACTTA | 57.932 | 37.500 | 0.00 | 0.00 | 39.11 | 2.24 |
2486 | 3253 | 6.668645 | TGCCATCTTATTGGTAACCACTTAT | 58.331 | 36.000 | 0.00 | 0.00 | 39.11 | 1.73 |
2487 | 3254 | 7.122715 | TGCCATCTTATTGGTAACCACTTATT | 58.877 | 34.615 | 0.00 | 0.00 | 39.11 | 1.40 |
2488 | 3255 | 7.617723 | TGCCATCTTATTGGTAACCACTTATTT | 59.382 | 33.333 | 0.00 | 0.00 | 39.11 | 1.40 |
2489 | 3256 | 7.920682 | GCCATCTTATTGGTAACCACTTATTTG | 59.079 | 37.037 | 0.00 | 0.00 | 39.11 | 2.32 |
2490 | 3257 | 8.413229 | CCATCTTATTGGTAACCACTTATTTGG | 58.587 | 37.037 | 0.00 | 0.00 | 35.97 | 3.28 |
2582 | 3349 | 7.197071 | TGGGACAATCGATTATATTTTTCGG | 57.803 | 36.000 | 10.97 | 0.00 | 31.92 | 4.30 |
2583 | 3350 | 6.993308 | TGGGACAATCGATTATATTTTTCGGA | 59.007 | 34.615 | 10.97 | 0.00 | 31.92 | 4.55 |
2584 | 3351 | 7.499563 | TGGGACAATCGATTATATTTTTCGGAA | 59.500 | 33.333 | 10.97 | 0.00 | 31.92 | 4.30 |
2585 | 3352 | 8.347035 | GGGACAATCGATTATATTTTTCGGAAA | 58.653 | 33.333 | 10.97 | 0.00 | 33.82 | 3.13 |
2586 | 3353 | 9.724839 | GGACAATCGATTATATTTTTCGGAAAA | 57.275 | 29.630 | 10.97 | 11.68 | 38.96 | 2.29 |
2597 | 3364 | 6.603940 | ATTTTTCGGAAAATTGATGGGAGA | 57.396 | 33.333 | 15.97 | 0.00 | 41.48 | 3.71 |
2598 | 3365 | 5.643379 | TTTTCGGAAAATTGATGGGAGAG | 57.357 | 39.130 | 11.68 | 0.00 | 0.00 | 3.20 |
2599 | 3366 | 4.568072 | TTCGGAAAATTGATGGGAGAGA | 57.432 | 40.909 | 0.00 | 0.00 | 0.00 | 3.10 |
2600 | 3367 | 4.568072 | TCGGAAAATTGATGGGAGAGAA | 57.432 | 40.909 | 0.00 | 0.00 | 0.00 | 2.87 |
2601 | 3368 | 4.917385 | TCGGAAAATTGATGGGAGAGAAA | 58.083 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2602 | 3369 | 5.509498 | TCGGAAAATTGATGGGAGAGAAAT | 58.491 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2603 | 3370 | 5.590259 | TCGGAAAATTGATGGGAGAGAAATC | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2604 | 3371 | 5.357878 | CGGAAAATTGATGGGAGAGAAATCA | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2605 | 3372 | 6.040166 | CGGAAAATTGATGGGAGAGAAATCAT | 59.960 | 38.462 | 0.00 | 0.00 | 30.76 | 2.45 |
2606 | 3373 | 7.229306 | CGGAAAATTGATGGGAGAGAAATCATA | 59.771 | 37.037 | 0.00 | 0.00 | 30.76 | 2.15 |
2607 | 3374 | 8.574737 | GGAAAATTGATGGGAGAGAAATCATAG | 58.425 | 37.037 | 0.00 | 0.00 | 30.76 | 2.23 |
2608 | 3375 | 9.347240 | GAAAATTGATGGGAGAGAAATCATAGA | 57.653 | 33.333 | 0.00 | 0.00 | 30.76 | 1.98 |
2609 | 3376 | 9.705103 | AAAATTGATGGGAGAGAAATCATAGAA | 57.295 | 29.630 | 0.00 | 0.00 | 30.76 | 2.10 |
2610 | 3377 | 8.921353 | AATTGATGGGAGAGAAATCATAGAAG | 57.079 | 34.615 | 0.00 | 0.00 | 30.76 | 2.85 |
2611 | 3378 | 7.681259 | TTGATGGGAGAGAAATCATAGAAGA | 57.319 | 36.000 | 0.00 | 0.00 | 30.76 | 2.87 |
2612 | 3379 | 7.300556 | TGATGGGAGAGAAATCATAGAAGAG | 57.699 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2613 | 3380 | 7.071917 | TGATGGGAGAGAAATCATAGAAGAGA | 58.928 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
2614 | 3381 | 6.975196 | TGGGAGAGAAATCATAGAAGAGAG | 57.025 | 41.667 | 0.00 | 0.00 | 0.00 | 3.20 |
2615 | 3382 | 6.677552 | TGGGAGAGAAATCATAGAAGAGAGA | 58.322 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2616 | 3383 | 7.128751 | TGGGAGAGAAATCATAGAAGAGAGAA | 58.871 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
2617 | 3384 | 7.621285 | TGGGAGAGAAATCATAGAAGAGAGAAA | 59.379 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
2618 | 3385 | 8.482128 | GGGAGAGAAATCATAGAAGAGAGAAAA | 58.518 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
2619 | 3386 | 9.883142 | GGAGAGAAATCATAGAAGAGAGAAAAA | 57.117 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2644 | 3411 | 7.757941 | AATCAAAGAAGAGAAGAAAAGAGGG | 57.242 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2645 | 3412 | 5.625150 | TCAAAGAAGAGAAGAAAAGAGGGG | 58.375 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
2646 | 3413 | 4.649267 | AAGAAGAGAAGAAAAGAGGGGG | 57.351 | 45.455 | 0.00 | 0.00 | 0.00 | 5.40 |
2662 | 3429 | 2.586648 | GGGGGCATATGTAAGGAAGG | 57.413 | 55.000 | 4.29 | 0.00 | 0.00 | 3.46 |
2663 | 3430 | 1.780919 | GGGGGCATATGTAAGGAAGGT | 59.219 | 52.381 | 4.29 | 0.00 | 0.00 | 3.50 |
2664 | 3431 | 2.177016 | GGGGGCATATGTAAGGAAGGTT | 59.823 | 50.000 | 4.29 | 0.00 | 0.00 | 3.50 |
2665 | 3432 | 3.222603 | GGGGCATATGTAAGGAAGGTTG | 58.777 | 50.000 | 4.29 | 0.00 | 0.00 | 3.77 |
2666 | 3433 | 3.222603 | GGGCATATGTAAGGAAGGTTGG | 58.777 | 50.000 | 4.29 | 0.00 | 0.00 | 3.77 |
2667 | 3434 | 2.623416 | GGCATATGTAAGGAAGGTTGGC | 59.377 | 50.000 | 4.29 | 0.00 | 0.00 | 4.52 |
2668 | 3435 | 2.623416 | GCATATGTAAGGAAGGTTGGCC | 59.377 | 50.000 | 4.29 | 0.00 | 0.00 | 5.36 |
2669 | 3436 | 2.702592 | TATGTAAGGAAGGTTGGCCG | 57.297 | 50.000 | 0.00 | 0.00 | 40.50 | 6.13 |
2670 | 3437 | 0.988832 | ATGTAAGGAAGGTTGGCCGA | 59.011 | 50.000 | 0.00 | 0.00 | 40.50 | 5.54 |
2671 | 3438 | 0.766131 | TGTAAGGAAGGTTGGCCGAA | 59.234 | 50.000 | 0.00 | 0.00 | 40.50 | 4.30 |
2672 | 3439 | 1.271163 | TGTAAGGAAGGTTGGCCGAAG | 60.271 | 52.381 | 0.00 | 0.00 | 40.50 | 3.79 |
2687 | 3454 | 2.029838 | CGAAGGAGAGGTGAAATGGG | 57.970 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2688 | 3455 | 1.555075 | CGAAGGAGAGGTGAAATGGGA | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
2689 | 3456 | 2.027192 | CGAAGGAGAGGTGAAATGGGAA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
2690 | 3457 | 3.348119 | GAAGGAGAGGTGAAATGGGAAC | 58.652 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2807 | 3574 | 9.429359 | AGAAAAGTGACACTAAATGACTATCAG | 57.571 | 33.333 | 8.91 | 0.00 | 0.00 | 2.90 |
2975 | 3743 | 5.240121 | AGCAGCCAAAATGGTAATTTCTTG | 58.760 | 37.500 | 0.00 | 0.00 | 40.46 | 3.02 |
3094 | 3870 | 7.818930 | CCATTTAGTTCACAATATGCCAAGTTT | 59.181 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
3133 | 3916 | 3.380637 | ACGAAGGTACGAATAGCAGACAT | 59.619 | 43.478 | 0.00 | 0.00 | 37.03 | 3.06 |
3261 | 4044 | 3.985553 | TTCCCCACTACTAGGCTATGA | 57.014 | 47.619 | 0.00 | 0.00 | 0.00 | 2.15 |
3274 | 4058 | 5.724854 | ACTAGGCTATGAGGTCCAAAGTTTA | 59.275 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3293 | 4077 | 6.408869 | AGTTTAAATCCTCATTTTGGCCATG | 58.591 | 36.000 | 6.09 | 1.23 | 33.95 | 3.66 |
3324 | 4108 | 1.071471 | CTGTGGCCCTGTTCTCGTT | 59.929 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
3359 | 4143 | 2.258755 | GTGCATTTACGCAATTCCACC | 58.741 | 47.619 | 0.00 | 0.00 | 45.14 | 4.61 |
3361 | 4145 | 2.163412 | TGCATTTACGCAATTCCACCTC | 59.837 | 45.455 | 0.00 | 0.00 | 39.45 | 3.85 |
3808 | 4592 | 3.691118 | TGAGTAATCCTTGATTGCTGTGC | 59.309 | 43.478 | 11.36 | 0.24 | 43.05 | 4.57 |
4107 | 4891 | 1.836999 | AATAGTGCGACCTGTGCCCA | 61.837 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
4130 | 4914 | 4.951715 | AGCCATGCAAGATCACTATGAAAA | 59.048 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
4131 | 4915 | 5.067413 | AGCCATGCAAGATCACTATGAAAAG | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4132 | 4916 | 5.279384 | CCATGCAAGATCACTATGAAAAGC | 58.721 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4133 | 4917 | 5.067413 | CCATGCAAGATCACTATGAAAAGCT | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 3.74 |
4134 | 4918 | 5.556355 | TGCAAGATCACTATGAAAAGCTG | 57.444 | 39.130 | 0.00 | 0.00 | 0.00 | 4.24 |
4136 | 4920 | 4.096081 | GCAAGATCACTATGAAAAGCTGCT | 59.904 | 41.667 | 0.00 | 0.00 | 0.00 | 4.24 |
4137 | 4921 | 5.295292 | GCAAGATCACTATGAAAAGCTGCTA | 59.705 | 40.000 | 0.90 | 0.00 | 0.00 | 3.49 |
4138 | 4922 | 6.713520 | CAAGATCACTATGAAAAGCTGCTAC | 58.286 | 40.000 | 0.90 | 0.00 | 0.00 | 3.58 |
4161 | 4945 | 9.511144 | CTACGGAAACTTCAACAAAAGTAAAAT | 57.489 | 29.630 | 0.00 | 0.00 | 38.52 | 1.82 |
4233 | 5017 | 4.576463 | ACGTTGCTCTTTCAGAGTGAAATT | 59.424 | 37.500 | 2.67 | 0.00 | 44.37 | 1.82 |
4588 | 5372 | 2.009681 | TACCTGGTTCTGTGCTCTCA | 57.990 | 50.000 | 3.84 | 0.00 | 0.00 | 3.27 |
4599 | 5383 | 3.811497 | TCTGTGCTCTCAGTTGTTGATTG | 59.189 | 43.478 | 0.00 | 0.00 | 34.68 | 2.67 |
4635 | 5419 | 4.432712 | ACTTTGGCTGTTGTTTTGATGAC | 58.567 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
4642 | 5426 | 2.032799 | TGTTGTTTTGATGACGAGCACC | 59.967 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
4667 | 5451 | 3.443037 | CAGTGCTGCTATCTAGTGTGAC | 58.557 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4796 | 5580 | 9.438228 | TTTGAATTGTCATATTTGTGCAATCAT | 57.562 | 25.926 | 0.00 | 0.00 | 32.60 | 2.45 |
4955 | 5739 | 5.541953 | ACAGTTGCAGCTAGATCATATCA | 57.458 | 39.130 | 1.52 | 0.00 | 0.00 | 2.15 |
4991 | 5775 | 2.583143 | AGTACAACCCAAAGCAGGTTC | 58.417 | 47.619 | 0.00 | 0.00 | 44.42 | 3.62 |
5030 | 5814 | 5.233902 | GCATGCTCTTAATGCTATATCCTCG | 59.766 | 44.000 | 11.37 | 0.00 | 45.62 | 4.63 |
5096 | 5882 | 2.360801 | GGAAGGCTAAACAAACACAGCA | 59.639 | 45.455 | 0.00 | 0.00 | 35.69 | 4.41 |
5151 | 5937 | 6.297889 | CCTCCTCCTAGTATCTGGATGGATTA | 60.298 | 46.154 | 0.00 | 0.00 | 32.96 | 1.75 |
5161 | 5947 | 2.232452 | CTGGATGGATTAGCCTACGGAG | 59.768 | 54.545 | 0.00 | 0.00 | 35.30 | 4.63 |
5254 | 6040 | 4.816925 | ACACAGCCAAAGTTTAGAGAGAAC | 59.183 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
5271 | 6057 | 8.103948 | AGAGAGAACATTATTTGACAACTTGG | 57.896 | 34.615 | 0.00 | 0.00 | 0.00 | 3.61 |
5275 | 6061 | 6.265196 | AGAACATTATTTGACAACTTGGCTCA | 59.735 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
5311 | 6104 | 8.729805 | TCAAATGCCAATTCAACTTTAGTTTT | 57.270 | 26.923 | 0.00 | 0.00 | 35.83 | 2.43 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
160 | 169 | 8.743714 | GTGGAAATGAAAGGAGACAATCTTAAT | 58.256 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
195 | 204 | 7.517320 | TGCTTGAGGCTTATAAATCAGGATAA | 58.483 | 34.615 | 7.77 | 0.00 | 42.39 | 1.75 |
398 | 837 | 8.326765 | TCCTTATTTATAAGCCTAGAACACCA | 57.673 | 34.615 | 4.33 | 0.00 | 38.69 | 4.17 |
409 | 848 | 9.646427 | CTACTCACTCCATCCTTATTTATAAGC | 57.354 | 37.037 | 4.33 | 0.00 | 38.69 | 3.09 |
515 | 956 | 6.668541 | ACTACGGATTGAAATGTGAGAATG | 57.331 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
516 | 957 | 8.041323 | ACTAACTACGGATTGAAATGTGAGAAT | 58.959 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
520 | 961 | 7.156000 | TGAACTAACTACGGATTGAAATGTGA | 58.844 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
683 | 1408 | 3.758554 | ACGCTTTGGCTATGATTCTGTTT | 59.241 | 39.130 | 0.00 | 0.00 | 36.09 | 2.83 |
799 | 1526 | 1.294138 | GTGTTGATTCCGACCGGGA | 59.706 | 57.895 | 6.32 | 0.00 | 45.40 | 5.14 |
998 | 1729 | 2.511600 | GGGACCGGTCGAGCATTG | 60.512 | 66.667 | 27.68 | 4.87 | 0.00 | 2.82 |
999 | 1730 | 2.683933 | AGGGACCGGTCGAGCATT | 60.684 | 61.111 | 27.68 | 6.88 | 0.00 | 3.56 |
1209 | 1940 | 1.103803 | ATCTACAAGCTCCGCGAGAA | 58.896 | 50.000 | 8.23 | 0.00 | 0.00 | 2.87 |
1243 | 1974 | 1.060698 | GAGACAAAGCAACCGCGATAC | 59.939 | 52.381 | 8.23 | 0.00 | 45.49 | 2.24 |
1463 | 2196 | 3.706373 | CCACTCCCGGGGTCACAG | 61.706 | 72.222 | 23.50 | 13.14 | 0.00 | 3.66 |
1494 | 2227 | 3.728076 | TGCACATCCTATCTACCGAAC | 57.272 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
1508 | 2241 | 5.416952 | CCCTAATCTGAACTTTCTTGCACAT | 59.583 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1556 | 2290 | 0.824109 | TTGCGAGATCTACCCCTGTG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1592 | 2337 | 7.255451 | CCATCTCAACAAGGCTACAAAAACTTA | 60.255 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
1593 | 2338 | 6.461509 | CCATCTCAACAAGGCTACAAAAACTT | 60.462 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
1594 | 2339 | 5.010012 | CCATCTCAACAAGGCTACAAAAACT | 59.990 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1595 | 2340 | 5.222631 | CCATCTCAACAAGGCTACAAAAAC | 58.777 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
1596 | 2341 | 4.261994 | GCCATCTCAACAAGGCTACAAAAA | 60.262 | 41.667 | 0.00 | 0.00 | 43.70 | 1.94 |
1597 | 2342 | 3.255642 | GCCATCTCAACAAGGCTACAAAA | 59.744 | 43.478 | 0.00 | 0.00 | 43.70 | 2.44 |
1598 | 2343 | 2.819608 | GCCATCTCAACAAGGCTACAAA | 59.180 | 45.455 | 0.00 | 0.00 | 43.70 | 2.83 |
1599 | 2344 | 2.436417 | GCCATCTCAACAAGGCTACAA | 58.564 | 47.619 | 0.00 | 0.00 | 43.70 | 2.41 |
1600 | 2345 | 2.113860 | GCCATCTCAACAAGGCTACA | 57.886 | 50.000 | 0.00 | 0.00 | 43.70 | 2.74 |
2035 | 2780 | 7.653311 | ACCTTTGCATTTTGTAACTGAGAATTC | 59.347 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2279 | 3045 | 5.951747 | TCCTGCTGCTCTAATGGTTAAAAAT | 59.048 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2331 | 3098 | 1.865865 | ACGCACGGGCAATTATCTAG | 58.134 | 50.000 | 11.77 | 0.00 | 41.24 | 2.43 |
2332 | 3099 | 1.937223 | CAACGCACGGGCAATTATCTA | 59.063 | 47.619 | 11.77 | 0.00 | 41.24 | 1.98 |
2333 | 3100 | 0.732571 | CAACGCACGGGCAATTATCT | 59.267 | 50.000 | 11.77 | 0.00 | 41.24 | 1.98 |
2334 | 3101 | 0.865639 | GCAACGCACGGGCAATTATC | 60.866 | 55.000 | 11.77 | 0.00 | 41.24 | 1.75 |
2335 | 3102 | 1.138671 | GCAACGCACGGGCAATTAT | 59.861 | 52.632 | 11.77 | 0.00 | 41.24 | 1.28 |
2336 | 3103 | 1.796190 | TTGCAACGCACGGGCAATTA | 61.796 | 50.000 | 11.77 | 0.00 | 42.12 | 1.40 |
2337 | 3104 | 3.144120 | TTGCAACGCACGGGCAATT | 62.144 | 52.632 | 11.77 | 0.00 | 42.12 | 2.32 |
2338 | 3105 | 3.600694 | TTGCAACGCACGGGCAAT | 61.601 | 55.556 | 11.77 | 0.00 | 42.12 | 3.56 |
2339 | 3106 | 4.560856 | GTTGCAACGCACGGGCAA | 62.561 | 61.111 | 14.90 | 16.74 | 44.50 | 4.52 |
2341 | 3108 | 4.980903 | CTGTTGCAACGCACGGGC | 62.981 | 66.667 | 23.79 | 0.00 | 38.71 | 6.13 |
2342 | 3109 | 4.326766 | CCTGTTGCAACGCACGGG | 62.327 | 66.667 | 23.79 | 12.20 | 38.71 | 5.28 |
2343 | 3110 | 2.128853 | ATTCCTGTTGCAACGCACGG | 62.129 | 55.000 | 23.79 | 19.54 | 38.71 | 4.94 |
2344 | 3111 | 0.515127 | TATTCCTGTTGCAACGCACG | 59.485 | 50.000 | 23.79 | 12.07 | 38.71 | 5.34 |
2345 | 3112 | 2.919666 | ATATTCCTGTTGCAACGCAC | 57.080 | 45.000 | 23.79 | 1.83 | 38.71 | 5.34 |
2346 | 3113 | 4.216472 | TGTTTATATTCCTGTTGCAACGCA | 59.784 | 37.500 | 23.79 | 7.32 | 36.47 | 5.24 |
2347 | 3114 | 4.728534 | TGTTTATATTCCTGTTGCAACGC | 58.271 | 39.130 | 23.79 | 2.38 | 0.00 | 4.84 |
2348 | 3115 | 7.250569 | AGAATGTTTATATTCCTGTTGCAACG | 58.749 | 34.615 | 23.79 | 17.58 | 37.70 | 4.10 |
2365 | 3132 | 9.490379 | GTCACGGGATAATCTATTAGAATGTTT | 57.510 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2366 | 3133 | 8.871125 | AGTCACGGGATAATCTATTAGAATGTT | 58.129 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2367 | 3134 | 8.307483 | CAGTCACGGGATAATCTATTAGAATGT | 58.693 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
2368 | 3135 | 8.307483 | ACAGTCACGGGATAATCTATTAGAATG | 58.693 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
2369 | 3136 | 8.423906 | ACAGTCACGGGATAATCTATTAGAAT | 57.576 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
2370 | 3137 | 7.834881 | ACAGTCACGGGATAATCTATTAGAA | 57.165 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2371 | 3138 | 7.118825 | CGTACAGTCACGGGATAATCTATTAGA | 59.881 | 40.741 | 0.00 | 0.00 | 38.26 | 2.10 |
2372 | 3139 | 7.094890 | ACGTACAGTCACGGGATAATCTATTAG | 60.095 | 40.741 | 0.00 | 0.00 | 46.12 | 1.73 |
2373 | 3140 | 6.712095 | ACGTACAGTCACGGGATAATCTATTA | 59.288 | 38.462 | 0.00 | 0.00 | 46.12 | 0.98 |
2374 | 3141 | 5.533903 | ACGTACAGTCACGGGATAATCTATT | 59.466 | 40.000 | 0.00 | 0.00 | 46.12 | 1.73 |
2375 | 3142 | 5.068636 | ACGTACAGTCACGGGATAATCTAT | 58.931 | 41.667 | 0.00 | 0.00 | 46.12 | 1.98 |
2376 | 3143 | 4.454678 | ACGTACAGTCACGGGATAATCTA | 58.545 | 43.478 | 0.00 | 0.00 | 46.12 | 1.98 |
2377 | 3144 | 3.285484 | ACGTACAGTCACGGGATAATCT | 58.715 | 45.455 | 0.00 | 0.00 | 46.12 | 2.40 |
2378 | 3145 | 3.705043 | ACGTACAGTCACGGGATAATC | 57.295 | 47.619 | 0.00 | 0.00 | 46.12 | 1.75 |
2390 | 3157 | 9.193133 | GCATCAATGTAATAATAGACGTACAGT | 57.807 | 33.333 | 0.00 | 0.00 | 30.45 | 3.55 |
2391 | 3158 | 8.365938 | CGCATCAATGTAATAATAGACGTACAG | 58.634 | 37.037 | 0.00 | 0.00 | 30.45 | 2.74 |
2392 | 3159 | 7.148869 | GCGCATCAATGTAATAATAGACGTACA | 60.149 | 37.037 | 0.30 | 0.00 | 0.00 | 2.90 |
2393 | 3160 | 7.061905 | AGCGCATCAATGTAATAATAGACGTAC | 59.938 | 37.037 | 11.47 | 0.00 | 0.00 | 3.67 |
2394 | 3161 | 7.088272 | AGCGCATCAATGTAATAATAGACGTA | 58.912 | 34.615 | 11.47 | 0.00 | 0.00 | 3.57 |
2395 | 3162 | 5.926542 | AGCGCATCAATGTAATAATAGACGT | 59.073 | 36.000 | 11.47 | 0.00 | 0.00 | 4.34 |
2396 | 3163 | 6.395089 | AGCGCATCAATGTAATAATAGACG | 57.605 | 37.500 | 11.47 | 0.00 | 0.00 | 4.18 |
2423 | 3190 | 8.810427 | CGATTGCATACAAAAATTTGCTAAGAT | 58.190 | 29.630 | 5.82 | 0.00 | 41.79 | 2.40 |
2424 | 3191 | 7.201427 | GCGATTGCATACAAAAATTTGCTAAGA | 60.201 | 33.333 | 0.00 | 0.00 | 40.46 | 2.10 |
2425 | 3192 | 6.896088 | GCGATTGCATACAAAAATTTGCTAAG | 59.104 | 34.615 | 0.00 | 0.00 | 40.46 | 2.18 |
2426 | 3193 | 6.183360 | GGCGATTGCATACAAAAATTTGCTAA | 60.183 | 34.615 | 7.38 | 0.00 | 45.35 | 3.09 |
2427 | 3194 | 5.290643 | GGCGATTGCATACAAAAATTTGCTA | 59.709 | 36.000 | 7.38 | 0.00 | 45.35 | 3.49 |
2428 | 3195 | 4.093261 | GGCGATTGCATACAAAAATTTGCT | 59.907 | 37.500 | 7.38 | 0.00 | 45.35 | 3.91 |
2429 | 3196 | 4.142945 | TGGCGATTGCATACAAAAATTTGC | 60.143 | 37.500 | 7.38 | 0.00 | 45.35 | 3.68 |
2430 | 3197 | 5.527511 | TGGCGATTGCATACAAAAATTTG | 57.472 | 34.783 | 7.38 | 4.40 | 45.35 | 2.32 |
2431 | 3198 | 6.740411 | ATTGGCGATTGCATACAAAAATTT | 57.260 | 29.167 | 7.38 | 0.00 | 45.35 | 1.82 |
2432 | 3199 | 8.436046 | AATATTGGCGATTGCATACAAAAATT | 57.564 | 26.923 | 7.38 | 4.45 | 45.35 | 1.82 |
2433 | 3200 | 8.436046 | AAATATTGGCGATTGCATACAAAAAT | 57.564 | 26.923 | 7.38 | 0.00 | 45.35 | 1.82 |
2434 | 3201 | 7.840342 | AAATATTGGCGATTGCATACAAAAA | 57.160 | 28.000 | 7.38 | 0.00 | 45.35 | 1.94 |
2435 | 3202 | 7.436673 | GGTAAATATTGGCGATTGCATACAAAA | 59.563 | 33.333 | 7.38 | 0.00 | 45.35 | 2.44 |
2436 | 3203 | 6.920758 | GGTAAATATTGGCGATTGCATACAAA | 59.079 | 34.615 | 7.38 | 0.00 | 45.35 | 2.83 |
2437 | 3204 | 6.264292 | AGGTAAATATTGGCGATTGCATACAA | 59.736 | 34.615 | 7.38 | 2.37 | 45.35 | 2.41 |
2438 | 3205 | 5.767665 | AGGTAAATATTGGCGATTGCATACA | 59.232 | 36.000 | 7.38 | 0.00 | 45.35 | 2.29 |
2439 | 3206 | 6.086222 | CAGGTAAATATTGGCGATTGCATAC | 58.914 | 40.000 | 7.38 | 0.00 | 45.35 | 2.39 |
2440 | 3207 | 5.335583 | GCAGGTAAATATTGGCGATTGCATA | 60.336 | 40.000 | 7.38 | 0.00 | 45.35 | 3.14 |
2441 | 3208 | 4.559300 | GCAGGTAAATATTGGCGATTGCAT | 60.559 | 41.667 | 7.38 | 0.00 | 45.35 | 3.96 |
2442 | 3209 | 3.243367 | GCAGGTAAATATTGGCGATTGCA | 60.243 | 43.478 | 7.38 | 0.00 | 45.35 | 4.08 |
2443 | 3210 | 3.308530 | GCAGGTAAATATTGGCGATTGC | 58.691 | 45.455 | 0.00 | 0.00 | 41.71 | 3.56 |
2444 | 3211 | 3.317711 | TGGCAGGTAAATATTGGCGATTG | 59.682 | 43.478 | 0.00 | 0.00 | 39.95 | 2.67 |
2445 | 3212 | 3.561143 | TGGCAGGTAAATATTGGCGATT | 58.439 | 40.909 | 0.00 | 0.00 | 39.95 | 3.34 |
2446 | 3213 | 3.222173 | TGGCAGGTAAATATTGGCGAT | 57.778 | 42.857 | 0.00 | 0.00 | 39.95 | 4.58 |
2447 | 3214 | 2.719531 | TGGCAGGTAAATATTGGCGA | 57.280 | 45.000 | 0.00 | 0.00 | 39.95 | 5.54 |
2448 | 3215 | 3.149196 | AGATGGCAGGTAAATATTGGCG | 58.851 | 45.455 | 0.00 | 0.00 | 39.95 | 5.69 |
2449 | 3216 | 6.840780 | ATAAGATGGCAGGTAAATATTGGC | 57.159 | 37.500 | 0.00 | 0.00 | 37.84 | 4.52 |
2450 | 3217 | 7.605449 | CCAATAAGATGGCAGGTAAATATTGG | 58.395 | 38.462 | 16.06 | 16.06 | 40.94 | 3.16 |
2451 | 3218 | 8.181904 | ACCAATAAGATGGCAGGTAAATATTG | 57.818 | 34.615 | 0.00 | 2.84 | 44.75 | 1.90 |
2452 | 3219 | 9.875708 | TTACCAATAAGATGGCAGGTAAATATT | 57.124 | 29.630 | 9.15 | 0.00 | 44.75 | 1.28 |
2453 | 3220 | 9.297037 | GTTACCAATAAGATGGCAGGTAAATAT | 57.703 | 33.333 | 12.23 | 0.00 | 44.75 | 1.28 |
2454 | 3221 | 7.722285 | GGTTACCAATAAGATGGCAGGTAAATA | 59.278 | 37.037 | 12.23 | 0.00 | 44.75 | 1.40 |
2455 | 3222 | 6.549736 | GGTTACCAATAAGATGGCAGGTAAAT | 59.450 | 38.462 | 12.23 | 0.00 | 44.75 | 1.40 |
2456 | 3223 | 5.889289 | GGTTACCAATAAGATGGCAGGTAAA | 59.111 | 40.000 | 12.23 | 0.00 | 44.75 | 2.01 |
2457 | 3224 | 5.044772 | TGGTTACCAATAAGATGGCAGGTAA | 60.045 | 40.000 | 0.00 | 7.87 | 44.75 | 2.85 |
2458 | 3225 | 4.475381 | TGGTTACCAATAAGATGGCAGGTA | 59.525 | 41.667 | 0.00 | 0.00 | 44.75 | 3.08 |
2459 | 3226 | 3.268334 | TGGTTACCAATAAGATGGCAGGT | 59.732 | 43.478 | 0.00 | 0.00 | 44.75 | 4.00 |
2460 | 3227 | 3.632145 | GTGGTTACCAATAAGATGGCAGG | 59.368 | 47.826 | 5.33 | 0.00 | 44.75 | 4.85 |
2461 | 3228 | 4.526970 | AGTGGTTACCAATAAGATGGCAG | 58.473 | 43.478 | 5.33 | 0.00 | 44.75 | 4.85 |
2462 | 3229 | 4.584638 | AGTGGTTACCAATAAGATGGCA | 57.415 | 40.909 | 5.33 | 0.00 | 44.75 | 4.92 |
2463 | 3230 | 7.582667 | AATAAGTGGTTACCAATAAGATGGC | 57.417 | 36.000 | 5.33 | 0.00 | 44.75 | 4.40 |
2464 | 3231 | 8.413229 | CCAAATAAGTGGTTACCAATAAGATGG | 58.587 | 37.037 | 5.33 | 8.77 | 38.94 | 3.51 |
2538 | 3305 | 9.968870 | TGTCCCATGTTTTGTACTTTTATTAAC | 57.031 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
2541 | 3308 | 9.705290 | GATTGTCCCATGTTTTGTACTTTTATT | 57.295 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2542 | 3309 | 8.026607 | CGATTGTCCCATGTTTTGTACTTTTAT | 58.973 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2543 | 3310 | 7.228906 | TCGATTGTCCCATGTTTTGTACTTTTA | 59.771 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2544 | 3311 | 6.039941 | TCGATTGTCCCATGTTTTGTACTTTT | 59.960 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
2545 | 3312 | 5.533154 | TCGATTGTCCCATGTTTTGTACTTT | 59.467 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2546 | 3313 | 5.067273 | TCGATTGTCCCATGTTTTGTACTT | 58.933 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2547 | 3314 | 4.647611 | TCGATTGTCCCATGTTTTGTACT | 58.352 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
2548 | 3315 | 5.560966 | ATCGATTGTCCCATGTTTTGTAC | 57.439 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
2549 | 3316 | 7.873719 | ATAATCGATTGTCCCATGTTTTGTA | 57.126 | 32.000 | 20.87 | 0.00 | 0.00 | 2.41 |
2550 | 3317 | 6.773976 | ATAATCGATTGTCCCATGTTTTGT | 57.226 | 33.333 | 20.87 | 0.00 | 0.00 | 2.83 |
2551 | 3318 | 9.748708 | AAATATAATCGATTGTCCCATGTTTTG | 57.251 | 29.630 | 20.87 | 0.00 | 0.00 | 2.44 |
2554 | 3321 | 9.965824 | GAAAAATATAATCGATTGTCCCATGTT | 57.034 | 29.630 | 20.87 | 7.37 | 0.00 | 2.71 |
2555 | 3322 | 8.289618 | CGAAAAATATAATCGATTGTCCCATGT | 58.710 | 33.333 | 20.87 | 1.24 | 38.82 | 3.21 |
2556 | 3323 | 7.750458 | CCGAAAAATATAATCGATTGTCCCATG | 59.250 | 37.037 | 20.87 | 3.27 | 38.82 | 3.66 |
2557 | 3324 | 7.663905 | TCCGAAAAATATAATCGATTGTCCCAT | 59.336 | 33.333 | 20.87 | 8.14 | 38.82 | 4.00 |
2558 | 3325 | 6.993308 | TCCGAAAAATATAATCGATTGTCCCA | 59.007 | 34.615 | 20.87 | 0.00 | 38.82 | 4.37 |
2559 | 3326 | 7.429636 | TCCGAAAAATATAATCGATTGTCCC | 57.570 | 36.000 | 20.87 | 1.43 | 38.82 | 4.46 |
2560 | 3327 | 9.724839 | TTTTCCGAAAAATATAATCGATTGTCC | 57.275 | 29.630 | 20.87 | 0.97 | 38.82 | 4.02 |
2571 | 3338 | 9.415008 | TCTCCCATCAATTTTCCGAAAAATATA | 57.585 | 29.630 | 10.27 | 0.00 | 42.82 | 0.86 |
2572 | 3339 | 8.305046 | TCTCCCATCAATTTTCCGAAAAATAT | 57.695 | 30.769 | 10.27 | 2.48 | 42.82 | 1.28 |
2573 | 3340 | 7.613801 | TCTCTCCCATCAATTTTCCGAAAAATA | 59.386 | 33.333 | 10.27 | 0.31 | 42.82 | 1.40 |
2574 | 3341 | 6.437162 | TCTCTCCCATCAATTTTCCGAAAAAT | 59.563 | 34.615 | 10.27 | 0.00 | 44.97 | 1.82 |
2575 | 3342 | 5.772672 | TCTCTCCCATCAATTTTCCGAAAAA | 59.227 | 36.000 | 10.27 | 0.00 | 38.66 | 1.94 |
2576 | 3343 | 5.321102 | TCTCTCCCATCAATTTTCCGAAAA | 58.679 | 37.500 | 8.71 | 8.71 | 34.41 | 2.29 |
2577 | 3344 | 4.917385 | TCTCTCCCATCAATTTTCCGAAA | 58.083 | 39.130 | 0.00 | 0.00 | 0.00 | 3.46 |
2578 | 3345 | 4.568072 | TCTCTCCCATCAATTTTCCGAA | 57.432 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
2579 | 3346 | 4.568072 | TTCTCTCCCATCAATTTTCCGA | 57.432 | 40.909 | 0.00 | 0.00 | 0.00 | 4.55 |
2580 | 3347 | 5.357878 | TGATTTCTCTCCCATCAATTTTCCG | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2581 | 3348 | 6.780457 | TGATTTCTCTCCCATCAATTTTCC | 57.220 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
2582 | 3349 | 9.347240 | TCTATGATTTCTCTCCCATCAATTTTC | 57.653 | 33.333 | 0.00 | 0.00 | 30.79 | 2.29 |
2583 | 3350 | 9.705103 | TTCTATGATTTCTCTCCCATCAATTTT | 57.295 | 29.630 | 0.00 | 0.00 | 30.79 | 1.82 |
2584 | 3351 | 9.352191 | CTTCTATGATTTCTCTCCCATCAATTT | 57.648 | 33.333 | 0.00 | 0.00 | 30.79 | 1.82 |
2585 | 3352 | 8.721479 | TCTTCTATGATTTCTCTCCCATCAATT | 58.279 | 33.333 | 0.00 | 0.00 | 30.79 | 2.32 |
2586 | 3353 | 8.272659 | TCTTCTATGATTTCTCTCCCATCAAT | 57.727 | 34.615 | 0.00 | 0.00 | 30.79 | 2.57 |
2587 | 3354 | 7.566509 | TCTCTTCTATGATTTCTCTCCCATCAA | 59.433 | 37.037 | 0.00 | 0.00 | 30.79 | 2.57 |
2588 | 3355 | 7.071917 | TCTCTTCTATGATTTCTCTCCCATCA | 58.928 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
2589 | 3356 | 7.451255 | TCTCTCTTCTATGATTTCTCTCCCATC | 59.549 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
2590 | 3357 | 7.304479 | TCTCTCTTCTATGATTTCTCTCCCAT | 58.696 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
2591 | 3358 | 6.677552 | TCTCTCTTCTATGATTTCTCTCCCA | 58.322 | 40.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2592 | 3359 | 7.595819 | TTCTCTCTTCTATGATTTCTCTCCC | 57.404 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2593 | 3360 | 9.883142 | TTTTTCTCTCTTCTATGATTTCTCTCC | 57.117 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
2618 | 3385 | 8.637099 | CCCTCTTTTCTTCTCTTCTTTGATTTT | 58.363 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2619 | 3386 | 7.232330 | CCCCTCTTTTCTTCTCTTCTTTGATTT | 59.768 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
2620 | 3387 | 6.718912 | CCCCTCTTTTCTTCTCTTCTTTGATT | 59.281 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2621 | 3388 | 6.244654 | CCCCTCTTTTCTTCTCTTCTTTGAT | 58.755 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2622 | 3389 | 5.456763 | CCCCCTCTTTTCTTCTCTTCTTTGA | 60.457 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2623 | 3390 | 4.764308 | CCCCCTCTTTTCTTCTCTTCTTTG | 59.236 | 45.833 | 0.00 | 0.00 | 0.00 | 2.77 |
2624 | 3391 | 4.991776 | CCCCCTCTTTTCTTCTCTTCTTT | 58.008 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
2625 | 3392 | 4.649267 | CCCCCTCTTTTCTTCTCTTCTT | 57.351 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2643 | 3410 | 1.780919 | ACCTTCCTTACATATGCCCCC | 59.219 | 52.381 | 1.58 | 0.00 | 0.00 | 5.40 |
2644 | 3411 | 3.222603 | CAACCTTCCTTACATATGCCCC | 58.777 | 50.000 | 1.58 | 0.00 | 0.00 | 5.80 |
2645 | 3412 | 3.222603 | CCAACCTTCCTTACATATGCCC | 58.777 | 50.000 | 1.58 | 0.00 | 0.00 | 5.36 |
2646 | 3413 | 2.623416 | GCCAACCTTCCTTACATATGCC | 59.377 | 50.000 | 1.58 | 0.00 | 0.00 | 4.40 |
2647 | 3414 | 2.623416 | GGCCAACCTTCCTTACATATGC | 59.377 | 50.000 | 1.58 | 0.00 | 0.00 | 3.14 |
2648 | 3415 | 2.878406 | CGGCCAACCTTCCTTACATATG | 59.122 | 50.000 | 2.24 | 0.00 | 0.00 | 1.78 |
2649 | 3416 | 2.775384 | TCGGCCAACCTTCCTTACATAT | 59.225 | 45.455 | 2.24 | 0.00 | 0.00 | 1.78 |
2650 | 3417 | 2.189676 | TCGGCCAACCTTCCTTACATA | 58.810 | 47.619 | 2.24 | 0.00 | 0.00 | 2.29 |
2651 | 3418 | 0.988832 | TCGGCCAACCTTCCTTACAT | 59.011 | 50.000 | 2.24 | 0.00 | 0.00 | 2.29 |
2652 | 3419 | 0.766131 | TTCGGCCAACCTTCCTTACA | 59.234 | 50.000 | 2.24 | 0.00 | 0.00 | 2.41 |
2653 | 3420 | 1.450025 | CTTCGGCCAACCTTCCTTAC | 58.550 | 55.000 | 2.24 | 0.00 | 0.00 | 2.34 |
2654 | 3421 | 0.326927 | CCTTCGGCCAACCTTCCTTA | 59.673 | 55.000 | 2.24 | 0.00 | 0.00 | 2.69 |
2655 | 3422 | 1.074951 | CCTTCGGCCAACCTTCCTT | 59.925 | 57.895 | 2.24 | 0.00 | 0.00 | 3.36 |
2656 | 3423 | 1.842381 | CTCCTTCGGCCAACCTTCCT | 61.842 | 60.000 | 2.24 | 0.00 | 0.00 | 3.36 |
2657 | 3424 | 1.377333 | CTCCTTCGGCCAACCTTCC | 60.377 | 63.158 | 2.24 | 0.00 | 0.00 | 3.46 |
2658 | 3425 | 0.391793 | CTCTCCTTCGGCCAACCTTC | 60.392 | 60.000 | 2.24 | 0.00 | 0.00 | 3.46 |
2659 | 3426 | 1.679898 | CTCTCCTTCGGCCAACCTT | 59.320 | 57.895 | 2.24 | 0.00 | 0.00 | 3.50 |
2660 | 3427 | 2.294078 | CCTCTCCTTCGGCCAACCT | 61.294 | 63.158 | 2.24 | 0.00 | 0.00 | 3.50 |
2661 | 3428 | 2.269241 | CCTCTCCTTCGGCCAACC | 59.731 | 66.667 | 2.24 | 0.00 | 0.00 | 3.77 |
2662 | 3429 | 1.376037 | CACCTCTCCTTCGGCCAAC | 60.376 | 63.158 | 2.24 | 0.00 | 0.00 | 3.77 |
2663 | 3430 | 1.125093 | TTCACCTCTCCTTCGGCCAA | 61.125 | 55.000 | 2.24 | 0.00 | 0.00 | 4.52 |
2664 | 3431 | 1.125093 | TTTCACCTCTCCTTCGGCCA | 61.125 | 55.000 | 2.24 | 0.00 | 0.00 | 5.36 |
2665 | 3432 | 0.253327 | ATTTCACCTCTCCTTCGGCC | 59.747 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2666 | 3433 | 1.373570 | CATTTCACCTCTCCTTCGGC | 58.626 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
2667 | 3434 | 1.407437 | CCCATTTCACCTCTCCTTCGG | 60.407 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2668 | 3435 | 1.555075 | TCCCATTTCACCTCTCCTTCG | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 3.79 |
2669 | 3436 | 3.348119 | GTTCCCATTTCACCTCTCCTTC | 58.652 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2670 | 3437 | 2.041755 | GGTTCCCATTTCACCTCTCCTT | 59.958 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2671 | 3438 | 1.636003 | GGTTCCCATTTCACCTCTCCT | 59.364 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
2672 | 3439 | 1.636003 | AGGTTCCCATTTCACCTCTCC | 59.364 | 52.381 | 0.00 | 0.00 | 35.99 | 3.71 |
2673 | 3440 | 3.441500 | AAGGTTCCCATTTCACCTCTC | 57.558 | 47.619 | 0.00 | 0.00 | 40.23 | 3.20 |
2674 | 3441 | 4.292306 | ACATAAGGTTCCCATTTCACCTCT | 59.708 | 41.667 | 0.00 | 0.00 | 40.23 | 3.69 |
2675 | 3442 | 4.600062 | ACATAAGGTTCCCATTTCACCTC | 58.400 | 43.478 | 0.00 | 0.00 | 40.23 | 3.85 |
2676 | 3443 | 4.675063 | ACATAAGGTTCCCATTTCACCT | 57.325 | 40.909 | 0.00 | 0.00 | 43.17 | 4.00 |
2766 | 3533 | 6.016276 | GTCACTTTTCTTTCTTCTTATGGCCA | 60.016 | 38.462 | 8.56 | 8.56 | 0.00 | 5.36 |
2807 | 3574 | 9.921637 | ATATAGCTGAATTCTTGACTAGCTTAC | 57.078 | 33.333 | 17.71 | 0.00 | 41.32 | 2.34 |
2975 | 3743 | 0.968405 | TTGGCCACATGCTCTTTTCC | 59.032 | 50.000 | 3.88 | 0.00 | 40.92 | 3.13 |
3061 | 3829 | 5.964958 | ATTGTGAACTAAATGGTGGTGAG | 57.035 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
3113 | 3889 | 3.491267 | GCATGTCTGCTATTCGTACCTTC | 59.509 | 47.826 | 0.00 | 0.00 | 45.32 | 3.46 |
3243 | 4026 | 2.158295 | ACCTCATAGCCTAGTAGTGGGG | 60.158 | 54.545 | 1.66 | 3.40 | 36.49 | 4.96 |
3244 | 4027 | 3.158676 | GACCTCATAGCCTAGTAGTGGG | 58.841 | 54.545 | 0.00 | 0.00 | 0.00 | 4.61 |
3261 | 4044 | 7.855784 | AAATGAGGATTTAAACTTTGGACCT | 57.144 | 32.000 | 0.00 | 0.00 | 29.49 | 3.85 |
3274 | 4058 | 3.054948 | CACCATGGCCAAAATGAGGATTT | 60.055 | 43.478 | 10.96 | 0.00 | 32.87 | 2.17 |
3293 | 4077 | 0.249031 | GCCACAGTTCAGTTTGCACC | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3359 | 4143 | 9.630098 | ATGTTTTATTCAACTACATTGCAAGAG | 57.370 | 29.630 | 4.94 | 4.77 | 38.29 | 2.85 |
3361 | 4145 | 9.195411 | ACATGTTTTATTCAACTACATTGCAAG | 57.805 | 29.630 | 4.94 | 0.00 | 38.29 | 4.01 |
3399 | 4183 | 5.827797 | TGTTATCATCTGGTAAGGGAAATGC | 59.172 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
3808 | 4592 | 6.261603 | AGAAGGTTTACGACAAAAGGTAAAGG | 59.738 | 38.462 | 0.00 | 0.00 | 38.77 | 3.11 |
4107 | 4891 | 3.851458 | TCATAGTGATCTTGCATGGCT | 57.149 | 42.857 | 0.00 | 0.00 | 0.00 | 4.75 |
4130 | 4914 | 2.143925 | GTTGAAGTTTCCGTAGCAGCT | 58.856 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
4131 | 4915 | 1.871039 | TGTTGAAGTTTCCGTAGCAGC | 59.129 | 47.619 | 0.00 | 0.00 | 0.00 | 5.25 |
4132 | 4916 | 4.545823 | TTTGTTGAAGTTTCCGTAGCAG | 57.454 | 40.909 | 0.00 | 0.00 | 0.00 | 4.24 |
4133 | 4917 | 4.396790 | ACTTTTGTTGAAGTTTCCGTAGCA | 59.603 | 37.500 | 0.00 | 0.00 | 36.49 | 3.49 |
4134 | 4918 | 4.916870 | ACTTTTGTTGAAGTTTCCGTAGC | 58.083 | 39.130 | 0.00 | 0.00 | 36.49 | 3.58 |
4136 | 4920 | 9.857957 | AATTTTACTTTTGTTGAAGTTTCCGTA | 57.142 | 25.926 | 0.00 | 0.00 | 40.24 | 4.02 |
4137 | 4921 | 8.652463 | CAATTTTACTTTTGTTGAAGTTTCCGT | 58.348 | 29.630 | 0.00 | 0.00 | 40.24 | 4.69 |
4138 | 4922 | 8.865001 | TCAATTTTACTTTTGTTGAAGTTTCCG | 58.135 | 29.630 | 0.00 | 0.00 | 40.24 | 4.30 |
4161 | 4945 | 2.290450 | TGCAGGCATGACATCTTCTCAA | 60.290 | 45.455 | 0.62 | 0.00 | 0.00 | 3.02 |
4233 | 5017 | 5.034852 | TCTTGTCCACTTCAATCTTGTCA | 57.965 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
4599 | 5383 | 7.215719 | ACAGCCAAAGTTTTCCTTCTAATAC | 57.784 | 36.000 | 0.00 | 0.00 | 31.27 | 1.89 |
4796 | 5580 | 2.849294 | TTCCACATCACCGTGAATCA | 57.151 | 45.000 | 5.07 | 0.00 | 39.34 | 2.57 |
4827 | 5611 | 8.150945 | ACTTACTTGCTTTCAGTTCTTCAGATA | 58.849 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
4862 | 5646 | 7.566858 | CCGAAAAGGAAATTATTGTTGTCAG | 57.433 | 36.000 | 0.00 | 0.00 | 45.00 | 3.51 |
4895 | 5679 | 3.784338 | CAAGTGGTTTTGCTGTGTTCAT | 58.216 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
4977 | 5761 | 1.187567 | GGCATGAACCTGCTTTGGGT | 61.188 | 55.000 | 0.00 | 0.00 | 41.95 | 4.51 |
4980 | 5764 | 0.963962 | AGTGGCATGAACCTGCTTTG | 59.036 | 50.000 | 0.00 | 0.00 | 41.95 | 2.77 |
4991 | 5775 | 2.587080 | ATGCTTTGGGAGTGGCATG | 58.413 | 52.632 | 0.00 | 0.00 | 42.71 | 4.06 |
5030 | 5814 | 1.294857 | ACGTTTGTTTGGGCATTTGC | 58.705 | 45.000 | 0.00 | 0.00 | 41.14 | 3.68 |
5056 | 5840 | 0.449388 | CTGGGCGACTTTTCATGAGC | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5096 | 5882 | 7.775397 | TTACAGTTGTACTCGCTAAACTTTT | 57.225 | 32.000 | 0.00 | 0.00 | 30.59 | 2.27 |
5161 | 5947 | 1.141053 | ACAAGGAAGGGTATCATCGCC | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
5229 | 6015 | 5.057149 | TCTCTCTAAACTTTGGCTGTGTTC | 58.943 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
5233 | 6019 | 5.036117 | TGTTCTCTCTAAACTTTGGCTGT | 57.964 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
5254 | 6040 | 8.984891 | TTAATGAGCCAAGTTGTCAAATAATG | 57.015 | 30.769 | 1.45 | 0.00 | 0.00 | 1.90 |
5269 | 6055 | 2.570415 | TGAACGGGTTTAATGAGCCA | 57.430 | 45.000 | 0.00 | 0.00 | 37.01 | 4.75 |
5271 | 6057 | 3.612423 | GCATTTGAACGGGTTTAATGAGC | 59.388 | 43.478 | 17.27 | 7.71 | 31.94 | 4.26 |
5275 | 6061 | 4.608948 | TTGGCATTTGAACGGGTTTAAT | 57.391 | 36.364 | 0.00 | 0.00 | 0.00 | 1.40 |
5311 | 6104 | 7.164230 | ACGGGCATTTTATGTTTAATCTTCA | 57.836 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5319 | 6112 | 6.104146 | AGGTTTAACGGGCATTTTATGTTT | 57.896 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
5324 | 6117 | 3.321111 | TGCAAGGTTTAACGGGCATTTTA | 59.679 | 39.130 | 3.53 | 0.00 | 0.00 | 1.52 |
5332 | 6125 | 4.425520 | TCAAAACTTGCAAGGTTTAACGG | 58.574 | 39.130 | 35.37 | 24.88 | 43.70 | 4.44 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.