Multiple sequence alignment - TraesCS7D01G215300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G215300 chr7D 100.000 2855 0 0 1 2855 174991500 174994354 0.000000e+00 5273.0
1 TraesCS7D01G215300 chr7D 99.278 277 2 0 26 302 375298432 375298156 4.250000e-138 501.0
2 TraesCS7D01G215300 chr7D 97.857 280 4 2 24 302 33640473 33640751 1.540000e-132 483.0
3 TraesCS7D01G215300 chr7D 95.254 295 9 4 24 317 554340953 554340663 2.000000e-126 462.0
4 TraesCS7D01G215300 chr7D 100.000 36 0 0 776 811 174992241 174992276 1.840000e-07 67.6
5 TraesCS7D01G215300 chr7D 100.000 36 0 0 742 777 174992275 174992310 1.840000e-07 67.6
6 TraesCS7D01G215300 chr7B 92.632 1900 76 24 970 2855 140652767 140654616 0.000000e+00 2675.0
7 TraesCS7D01G215300 chr7B 86.379 301 32 5 481 775 140652356 140652653 1.280000e-83 320.0
8 TraesCS7D01G215300 chr7B 96.078 153 1 3 776 925 140652620 140652770 7.900000e-61 244.0
9 TraesCS7D01G215300 chr7A 94.317 1091 47 7 776 1859 177135823 177136905 0.000000e+00 1657.0
10 TraesCS7D01G215300 chr7A 87.185 476 43 11 2280 2747 177137577 177138042 2.520000e-145 525.0
11 TraesCS7D01G215300 chr7A 87.674 430 45 5 350 775 177135431 177135856 7.110000e-136 494.0
12 TraesCS7D01G215300 chr7A 98.113 106 2 0 2256 2361 177137512 177137617 4.860000e-43 185.0
13 TraesCS7D01G215300 chr7A 84.000 125 6 2 2135 2259 177137105 177137215 1.080000e-19 108.0
14 TraesCS7D01G215300 chr7A 93.548 62 3 1 1979 2040 177136973 177137033 1.090000e-14 91.6
15 TraesCS7D01G215300 chr3D 97.945 292 4 2 13 302 113999093 113999384 3.280000e-139 505.0
16 TraesCS7D01G215300 chr2D 98.925 279 3 0 24 302 192306699 192306421 1.530000e-137 499.0
17 TraesCS7D01G215300 chr2D 97.143 280 6 2 24 302 459479511 459479233 3.330000e-129 472.0
18 TraesCS7D01G215300 chr2D 85.153 229 30 3 1045 1272 32763202 32763427 6.150000e-57 231.0
19 TraesCS7D01G215300 chr1D 98.566 279 3 1 25 302 433254745 433255023 2.560000e-135 492.0
20 TraesCS7D01G215300 chr6D 97.535 284 5 2 20 302 380374186 380373904 4.280000e-133 484.0
21 TraesCS7D01G215300 chr6D 96.831 284 7 2 21 302 45654815 45655098 9.260000e-130 473.0
22 TraesCS7D01G215300 chr6D 93.711 159 10 0 1114 1272 378379441 378379283 3.680000e-59 239.0
23 TraesCS7D01G215300 chr6A 94.340 159 9 0 1114 1272 520355711 520355553 7.900000e-61 244.0
24 TraesCS7D01G215300 chr2B 85.153 229 30 3 1045 1272 54440270 54440495 6.150000e-57 231.0
25 TraesCS7D01G215300 chr6B 92.453 159 12 0 1114 1272 564993599 564993441 7.960000e-56 228.0
26 TraesCS7D01G215300 chr2A 87.065 201 23 2 1095 1295 35975995 35976192 1.030000e-54 224.0
27 TraesCS7D01G215300 chr5B 86.517 178 24 0 1089 1266 582773734 582773911 2.240000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G215300 chr7D 174991500 174994354 2854 False 1802.733333 5273 100.000000 1 2855 3 chr7D.!!$F2 2854
1 TraesCS7D01G215300 chr7B 140652356 140654616 2260 False 1079.666667 2675 91.696333 481 2855 3 chr7B.!!$F1 2374
2 TraesCS7D01G215300 chr7A 177135431 177138042 2611 False 510.100000 1657 90.806167 350 2747 6 chr7A.!!$F1 2397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 763 0.036388 AGGGCAATAGTGTGACGTGG 60.036 55.0 0.0 0.0 0.0 4.94 F
776 787 0.467290 CCGGGGAGGAAGAGAGAGAG 60.467 65.0 0.0 0.0 45.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1779 0.038618 CGGCGATGTCGAATATCCCA 60.039 55.0 0.0 0.0 43.02 4.37 R
2689 3073 0.671781 GCCTTCTCACTCATGTGCGT 60.672 55.0 0.0 0.0 43.49 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.017265 GCCTCAAGTGTGATGGTTTTG 57.983 47.619 0.00 0.00 31.85 2.44
21 22 2.288395 GCCTCAAGTGTGATGGTTTTGG 60.288 50.000 0.00 0.00 31.85 3.28
22 23 3.221771 CCTCAAGTGTGATGGTTTTGGA 58.778 45.455 0.00 0.00 31.85 3.53
23 24 3.828451 CCTCAAGTGTGATGGTTTTGGAT 59.172 43.478 0.00 0.00 31.85 3.41
24 25 4.281688 CCTCAAGTGTGATGGTTTTGGATT 59.718 41.667 0.00 0.00 31.85 3.01
25 26 5.221501 CCTCAAGTGTGATGGTTTTGGATTT 60.222 40.000 0.00 0.00 31.85 2.17
26 27 6.232581 TCAAGTGTGATGGTTTTGGATTTT 57.767 33.333 0.00 0.00 0.00 1.82
27 28 6.648192 TCAAGTGTGATGGTTTTGGATTTTT 58.352 32.000 0.00 0.00 0.00 1.94
48 49 4.698201 TTTTTGGAAAAGGGGTGATTCC 57.302 40.909 0.00 0.00 42.39 3.01
57 58 3.090532 GGTGATTCCCCGGCCTCT 61.091 66.667 0.00 0.00 0.00 3.69
58 59 2.190578 GTGATTCCCCGGCCTCTG 59.809 66.667 0.00 0.00 0.00 3.35
59 60 3.797353 TGATTCCCCGGCCTCTGC 61.797 66.667 0.00 0.00 0.00 4.26
60 61 3.797353 GATTCCCCGGCCTCTGCA 61.797 66.667 0.00 0.00 40.13 4.41
61 62 3.099170 ATTCCCCGGCCTCTGCAT 61.099 61.111 0.00 0.00 40.13 3.96
62 63 3.125376 ATTCCCCGGCCTCTGCATC 62.125 63.158 0.00 0.00 40.13 3.91
64 65 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
65 66 4.559063 CCCGGCCTCTGCATCAGG 62.559 72.222 0.00 7.38 40.13 3.86
66 67 3.790437 CCGGCCTCTGCATCAGGT 61.790 66.667 12.36 0.00 40.13 4.00
67 68 2.513204 CGGCCTCTGCATCAGGTG 60.513 66.667 12.36 3.60 40.13 4.00
68 69 2.124403 GGCCTCTGCATCAGGTGG 60.124 66.667 12.36 1.24 40.13 4.61
69 70 2.673200 GGCCTCTGCATCAGGTGGA 61.673 63.158 12.36 0.00 40.13 4.02
70 71 1.530771 GCCTCTGCATCAGGTGGAT 59.469 57.895 12.36 0.00 37.47 3.41
78 79 1.516161 CATCAGGTGGATGCATACGG 58.484 55.000 4.01 0.00 46.35 4.02
79 80 0.250467 ATCAGGTGGATGCATACGGC 60.250 55.000 4.01 0.00 45.13 5.68
80 81 1.893808 CAGGTGGATGCATACGGCC 60.894 63.158 12.93 12.93 43.89 6.13
81 82 2.191908 GGTGGATGCATACGGCCA 59.808 61.111 15.22 8.81 43.89 5.36
82 83 3.420943 GTGGATGCATACGGCCAC 58.579 61.111 16.85 16.85 43.34 5.01
83 84 1.153168 GTGGATGCATACGGCCACT 60.153 57.895 22.03 0.00 45.58 4.00
84 85 0.748005 GTGGATGCATACGGCCACTT 60.748 55.000 22.03 0.00 45.58 3.16
85 86 0.833949 TGGATGCATACGGCCACTTA 59.166 50.000 4.01 0.00 43.89 2.24
86 87 1.202639 TGGATGCATACGGCCACTTAG 60.203 52.381 4.01 0.00 43.89 2.18
87 88 1.070134 GGATGCATACGGCCACTTAGA 59.930 52.381 2.24 0.00 43.89 2.10
88 89 2.289694 GGATGCATACGGCCACTTAGAT 60.290 50.000 2.24 0.00 43.89 1.98
89 90 3.056107 GGATGCATACGGCCACTTAGATA 60.056 47.826 2.24 0.00 43.89 1.98
90 91 4.562757 GGATGCATACGGCCACTTAGATAA 60.563 45.833 2.24 0.00 43.89 1.75
91 92 4.409718 TGCATACGGCCACTTAGATAAA 57.590 40.909 2.24 0.00 43.89 1.40
92 93 4.968259 TGCATACGGCCACTTAGATAAAT 58.032 39.130 2.24 0.00 43.89 1.40
93 94 6.104146 TGCATACGGCCACTTAGATAAATA 57.896 37.500 2.24 0.00 43.89 1.40
94 95 6.526526 TGCATACGGCCACTTAGATAAATAA 58.473 36.000 2.24 0.00 43.89 1.40
95 96 6.993308 TGCATACGGCCACTTAGATAAATAAA 59.007 34.615 2.24 0.00 43.89 1.40
96 97 7.499563 TGCATACGGCCACTTAGATAAATAAAA 59.500 33.333 2.24 0.00 43.89 1.52
97 98 8.512138 GCATACGGCCACTTAGATAAATAAAAT 58.488 33.333 2.24 0.00 36.11 1.82
100 101 8.617290 ACGGCCACTTAGATAAATAAAATAGG 57.383 34.615 2.24 0.00 0.00 2.57
101 102 8.215736 ACGGCCACTTAGATAAATAAAATAGGT 58.784 33.333 2.24 0.00 0.00 3.08
102 103 9.063615 CGGCCACTTAGATAAATAAAATAGGTT 57.936 33.333 2.24 0.00 0.00 3.50
118 119 8.661352 AAAATAGGTTCCACAATGTTGAAAAG 57.339 30.769 1.28 0.00 0.00 2.27
119 120 6.976934 ATAGGTTCCACAATGTTGAAAAGT 57.023 33.333 1.28 0.00 0.00 2.66
120 121 5.262588 AGGTTCCACAATGTTGAAAAGTC 57.737 39.130 1.28 0.00 0.00 3.01
121 122 4.041723 GGTTCCACAATGTTGAAAAGTCG 58.958 43.478 1.28 0.00 0.00 4.18
122 123 4.439563 GGTTCCACAATGTTGAAAAGTCGT 60.440 41.667 1.28 0.00 0.00 4.34
123 124 5.220892 GGTTCCACAATGTTGAAAAGTCGTA 60.221 40.000 1.28 0.00 0.00 3.43
124 125 6.259638 GTTCCACAATGTTGAAAAGTCGTAA 58.740 36.000 1.28 0.00 0.00 3.18
125 126 6.438259 TCCACAATGTTGAAAAGTCGTAAA 57.562 33.333 0.00 0.00 0.00 2.01
126 127 6.853720 TCCACAATGTTGAAAAGTCGTAAAA 58.146 32.000 0.00 0.00 0.00 1.52
127 128 6.970043 TCCACAATGTTGAAAAGTCGTAAAAG 59.030 34.615 0.00 0.00 0.00 2.27
128 129 6.970043 CCACAATGTTGAAAAGTCGTAAAAGA 59.030 34.615 0.00 0.00 0.00 2.52
129 130 7.486551 CCACAATGTTGAAAAGTCGTAAAAGAA 59.513 33.333 0.00 0.00 0.00 2.52
130 131 8.855279 CACAATGTTGAAAAGTCGTAAAAGAAA 58.145 29.630 0.00 0.00 0.00 2.52
131 132 9.413048 ACAATGTTGAAAAGTCGTAAAAGAAAA 57.587 25.926 0.00 0.00 0.00 2.29
132 133 9.670180 CAATGTTGAAAAGTCGTAAAAGAAAAC 57.330 29.630 0.00 0.00 0.00 2.43
133 134 9.634163 AATGTTGAAAAGTCGTAAAAGAAAACT 57.366 25.926 0.00 0.00 0.00 2.66
135 136 9.545611 TGTTGAAAAGTCGTAAAAGAAAACTAC 57.454 29.630 0.00 0.00 0.00 2.73
136 137 8.718808 GTTGAAAAGTCGTAAAAGAAAACTACG 58.281 33.333 0.00 0.00 39.75 3.51
137 138 7.962917 TGAAAAGTCGTAAAAGAAAACTACGT 58.037 30.769 0.00 0.00 39.47 3.57
138 139 8.110002 TGAAAAGTCGTAAAAGAAAACTACGTC 58.890 33.333 0.00 0.00 39.47 4.34
139 140 5.796279 AGTCGTAAAAGAAAACTACGTCG 57.204 39.130 0.00 0.00 39.47 5.12
140 141 5.510671 AGTCGTAAAAGAAAACTACGTCGA 58.489 37.500 0.00 0.00 39.47 4.20
141 142 5.622856 AGTCGTAAAAGAAAACTACGTCGAG 59.377 40.000 0.00 0.00 39.47 4.04
142 143 4.379793 TCGTAAAAGAAAACTACGTCGAGC 59.620 41.667 0.00 0.00 39.47 5.03
143 144 4.380974 CGTAAAAGAAAACTACGTCGAGCT 59.619 41.667 0.00 0.00 34.99 4.09
144 145 4.968660 AAAAGAAAACTACGTCGAGCTC 57.031 40.909 2.73 2.73 0.00 4.09
145 146 3.637998 AAGAAAACTACGTCGAGCTCA 57.362 42.857 15.40 0.00 0.00 4.26
146 147 2.931228 AGAAAACTACGTCGAGCTCAC 58.069 47.619 15.40 10.09 0.00 3.51
147 148 2.292569 AGAAAACTACGTCGAGCTCACA 59.707 45.455 15.40 0.00 0.00 3.58
148 149 3.057456 AGAAAACTACGTCGAGCTCACAT 60.057 43.478 15.40 2.38 0.00 3.21
149 150 4.155462 AGAAAACTACGTCGAGCTCACATA 59.845 41.667 15.40 3.47 0.00 2.29
150 151 3.677190 AACTACGTCGAGCTCACATAG 57.323 47.619 15.40 14.50 0.00 2.23
151 152 2.902523 ACTACGTCGAGCTCACATAGA 58.097 47.619 19.29 5.53 0.00 1.98
152 153 2.608546 ACTACGTCGAGCTCACATAGAC 59.391 50.000 19.29 14.38 0.00 2.59
153 154 0.733729 ACGTCGAGCTCACATAGACC 59.266 55.000 15.40 0.00 0.00 3.85
154 155 1.018148 CGTCGAGCTCACATAGACCT 58.982 55.000 15.40 0.00 0.00 3.85
155 156 1.003331 CGTCGAGCTCACATAGACCTC 60.003 57.143 15.40 0.00 0.00 3.85
156 157 3.835686 CGAGCTCACATAGACCTCG 57.164 57.895 15.40 0.00 43.61 4.63
157 158 1.018148 CGAGCTCACATAGACCTCGT 58.982 55.000 15.40 0.00 43.93 4.18
158 159 1.003331 CGAGCTCACATAGACCTCGTC 60.003 57.143 15.40 0.00 43.93 4.20
159 160 2.017782 GAGCTCACATAGACCTCGTCA 58.982 52.381 9.40 0.00 34.60 4.35
160 161 1.746220 AGCTCACATAGACCTCGTCAC 59.254 52.381 0.00 0.00 34.60 3.67
161 162 1.532090 GCTCACATAGACCTCGTCACG 60.532 57.143 0.00 0.00 34.60 4.35
162 163 2.007608 CTCACATAGACCTCGTCACGA 58.992 52.381 0.00 0.00 34.60 4.35
163 164 2.418976 CTCACATAGACCTCGTCACGAA 59.581 50.000 0.00 0.00 34.74 3.85
164 165 2.815503 TCACATAGACCTCGTCACGAAA 59.184 45.455 0.00 0.00 34.74 3.46
165 166 3.253921 TCACATAGACCTCGTCACGAAAA 59.746 43.478 0.00 0.00 34.74 2.29
166 167 4.082408 TCACATAGACCTCGTCACGAAAAT 60.082 41.667 0.00 0.00 34.74 1.82
167 168 5.124297 TCACATAGACCTCGTCACGAAAATA 59.876 40.000 0.00 0.00 34.74 1.40
168 169 5.229469 CACATAGACCTCGTCACGAAAATAC 59.771 44.000 0.00 0.00 34.74 1.89
169 170 3.928727 AGACCTCGTCACGAAAATACA 57.071 42.857 0.00 0.00 34.74 2.29
170 171 4.247267 AGACCTCGTCACGAAAATACAA 57.753 40.909 0.00 0.00 34.74 2.41
171 172 4.624015 AGACCTCGTCACGAAAATACAAA 58.376 39.130 0.00 0.00 34.74 2.83
172 173 5.051816 AGACCTCGTCACGAAAATACAAAA 58.948 37.500 0.00 0.00 34.74 2.44
173 174 5.524646 AGACCTCGTCACGAAAATACAAAAA 59.475 36.000 0.00 0.00 34.74 1.94
195 196 1.510844 GCCATAAAGCCACAACCGG 59.489 57.895 0.00 0.00 0.00 5.28
203 204 4.641645 CCACAACCGGCTGGCAGA 62.642 66.667 20.86 0.00 39.70 4.26
204 205 2.594303 CACAACCGGCTGGCAGAA 60.594 61.111 20.86 0.00 39.70 3.02
205 206 2.192861 CACAACCGGCTGGCAGAAA 61.193 57.895 20.86 0.00 39.70 2.52
206 207 1.454847 ACAACCGGCTGGCAGAAAA 60.455 52.632 20.86 0.00 39.70 2.29
207 208 1.040339 ACAACCGGCTGGCAGAAAAA 61.040 50.000 20.86 0.00 39.70 1.94
208 209 0.318120 CAACCGGCTGGCAGAAAAAT 59.682 50.000 20.86 0.00 39.70 1.82
209 210 1.543802 CAACCGGCTGGCAGAAAAATA 59.456 47.619 20.86 0.00 39.70 1.40
210 211 1.463674 ACCGGCTGGCAGAAAAATAG 58.536 50.000 20.86 1.14 39.70 1.73
211 212 0.740737 CCGGCTGGCAGAAAAATAGG 59.259 55.000 20.86 5.84 0.00 2.57
212 213 1.463674 CGGCTGGCAGAAAAATAGGT 58.536 50.000 20.86 0.00 0.00 3.08
213 214 2.639065 CGGCTGGCAGAAAAATAGGTA 58.361 47.619 20.86 0.00 0.00 3.08
214 215 3.214328 CGGCTGGCAGAAAAATAGGTAT 58.786 45.455 20.86 0.00 0.00 2.73
215 216 3.003689 CGGCTGGCAGAAAAATAGGTATG 59.996 47.826 20.86 0.00 0.00 2.39
216 217 3.319122 GGCTGGCAGAAAAATAGGTATGG 59.681 47.826 20.86 0.00 0.00 2.74
217 218 4.207165 GCTGGCAGAAAAATAGGTATGGA 58.793 43.478 20.86 0.00 0.00 3.41
218 219 4.644685 GCTGGCAGAAAAATAGGTATGGAA 59.355 41.667 20.86 0.00 0.00 3.53
219 220 5.127031 GCTGGCAGAAAAATAGGTATGGAAA 59.873 40.000 20.86 0.00 0.00 3.13
220 221 6.524101 TGGCAGAAAAATAGGTATGGAAAC 57.476 37.500 0.00 0.00 0.00 2.78
221 222 6.252995 TGGCAGAAAAATAGGTATGGAAACT 58.747 36.000 0.00 0.00 0.00 2.66
222 223 7.406916 TGGCAGAAAAATAGGTATGGAAACTA 58.593 34.615 0.00 0.00 0.00 2.24
223 224 7.891183 TGGCAGAAAAATAGGTATGGAAACTAA 59.109 33.333 0.00 0.00 0.00 2.24
224 225 8.914011 GGCAGAAAAATAGGTATGGAAACTAAT 58.086 33.333 0.00 0.00 0.00 1.73
228 229 9.529325 GAAAAATAGGTATGGAAACTAATTGCC 57.471 33.333 0.00 0.00 0.00 4.52
229 230 8.602472 AAAATAGGTATGGAAACTAATTGCCA 57.398 30.769 0.00 0.00 34.45 4.92
230 231 8.602472 AAATAGGTATGGAAACTAATTGCCAA 57.398 30.769 0.00 0.00 33.51 4.52
231 232 8.782137 AATAGGTATGGAAACTAATTGCCAAT 57.218 30.769 0.00 0.00 33.51 3.16
232 233 6.715347 AGGTATGGAAACTAATTGCCAATC 57.285 37.500 0.00 0.00 33.51 2.67
233 234 5.598417 AGGTATGGAAACTAATTGCCAATCC 59.402 40.000 0.00 0.00 33.51 3.01
234 235 5.598417 GGTATGGAAACTAATTGCCAATCCT 59.402 40.000 0.00 0.00 33.51 3.24
235 236 6.775629 GGTATGGAAACTAATTGCCAATCCTA 59.224 38.462 0.00 0.00 33.51 2.94
236 237 7.451566 GGTATGGAAACTAATTGCCAATCCTAT 59.548 37.037 0.00 0.00 33.51 2.57
237 238 7.919385 ATGGAAACTAATTGCCAATCCTATT 57.081 32.000 0.00 0.00 33.51 1.73
239 240 8.232913 TGGAAACTAATTGCCAATCCTATTAC 57.767 34.615 0.00 0.00 0.00 1.89
240 241 7.836685 TGGAAACTAATTGCCAATCCTATTACA 59.163 33.333 0.00 0.00 0.00 2.41
241 242 8.860088 GGAAACTAATTGCCAATCCTATTACAT 58.140 33.333 0.00 0.00 0.00 2.29
242 243 9.683069 GAAACTAATTGCCAATCCTATTACATG 57.317 33.333 0.00 0.00 0.00 3.21
243 244 8.995027 AACTAATTGCCAATCCTATTACATGA 57.005 30.769 0.00 0.00 0.00 3.07
244 245 8.396272 ACTAATTGCCAATCCTATTACATGAC 57.604 34.615 0.00 0.00 0.00 3.06
245 246 6.655078 AATTGCCAATCCTATTACATGACC 57.345 37.500 0.00 0.00 0.00 4.02
246 247 3.738982 TGCCAATCCTATTACATGACCG 58.261 45.455 0.00 0.00 0.00 4.79
247 248 2.484264 GCCAATCCTATTACATGACCGC 59.516 50.000 0.00 0.00 0.00 5.68
248 249 3.074412 CCAATCCTATTACATGACCGCC 58.926 50.000 0.00 0.00 0.00 6.13
249 250 3.495983 CCAATCCTATTACATGACCGCCA 60.496 47.826 0.00 0.00 0.00 5.69
250 251 4.326826 CAATCCTATTACATGACCGCCAT 58.673 43.478 0.00 0.00 35.44 4.40
251 252 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
252 253 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
253 254 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
254 255 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
255 256 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
256 257 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
257 258 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
258 259 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
259 260 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
261 262 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
262 263 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
263 264 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
264 265 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
265 266 0.894835 GCCATCCAAACCGGTTGAAT 59.105 50.000 23.08 11.91 39.87 2.57
266 267 2.096248 GCCATCCAAACCGGTTGAATA 58.904 47.619 23.08 7.51 39.87 1.75
267 268 2.693074 GCCATCCAAACCGGTTGAATAT 59.307 45.455 23.08 9.64 39.87 1.28
268 269 3.886505 GCCATCCAAACCGGTTGAATATA 59.113 43.478 23.08 4.03 39.87 0.86
269 270 4.522789 GCCATCCAAACCGGTTGAATATAT 59.477 41.667 23.08 6.33 39.87 0.86
270 271 5.335661 GCCATCCAAACCGGTTGAATATATC 60.336 44.000 23.08 3.59 39.87 1.63
271 272 5.183140 CCATCCAAACCGGTTGAATATATCC 59.817 44.000 23.08 0.00 39.87 2.59
272 273 4.721132 TCCAAACCGGTTGAATATATCCC 58.279 43.478 23.08 0.00 39.87 3.85
273 274 3.500680 CCAAACCGGTTGAATATATCCCG 59.499 47.826 23.08 0.00 39.87 5.14
274 275 2.467566 ACCGGTTGAATATATCCCGC 57.532 50.000 0.00 0.00 37.37 6.13
275 276 1.337447 ACCGGTTGAATATATCCCGCG 60.337 52.381 0.00 0.00 37.37 6.46
276 277 0.719465 CGGTTGAATATATCCCGCGC 59.281 55.000 0.00 0.00 0.00 6.86
277 278 1.671850 CGGTTGAATATATCCCGCGCT 60.672 52.381 5.56 0.00 0.00 5.92
278 279 2.416296 CGGTTGAATATATCCCGCGCTA 60.416 50.000 5.56 0.00 0.00 4.26
279 280 2.928116 GGTTGAATATATCCCGCGCTAC 59.072 50.000 5.56 0.00 0.00 3.58
280 281 2.928116 GTTGAATATATCCCGCGCTACC 59.072 50.000 5.56 0.00 0.00 3.18
281 282 2.172679 TGAATATATCCCGCGCTACCA 58.827 47.619 5.56 0.00 0.00 3.25
282 283 2.764010 TGAATATATCCCGCGCTACCAT 59.236 45.455 5.56 0.00 0.00 3.55
283 284 3.181479 TGAATATATCCCGCGCTACCATC 60.181 47.826 5.56 0.00 0.00 3.51
284 285 2.139323 TATATCCCGCGCTACCATCT 57.861 50.000 5.56 0.00 0.00 2.90
285 286 0.818296 ATATCCCGCGCTACCATCTC 59.182 55.000 5.56 0.00 0.00 2.75
286 287 1.248785 TATCCCGCGCTACCATCTCC 61.249 60.000 5.56 0.00 0.00 3.71
287 288 4.301027 CCCGCGCTACCATCTCCC 62.301 72.222 5.56 0.00 0.00 4.30
288 289 3.536917 CCGCGCTACCATCTCCCA 61.537 66.667 5.56 0.00 0.00 4.37
289 290 2.279517 CGCGCTACCATCTCCCAC 60.280 66.667 5.56 0.00 0.00 4.61
290 291 2.109181 GCGCTACCATCTCCCACC 59.891 66.667 0.00 0.00 0.00 4.61
291 292 2.417516 CGCTACCATCTCCCACCG 59.582 66.667 0.00 0.00 0.00 4.94
292 293 2.822399 GCTACCATCTCCCACCGG 59.178 66.667 0.00 0.00 0.00 5.28
293 294 1.760875 GCTACCATCTCCCACCGGA 60.761 63.158 9.46 0.00 36.45 5.14
294 295 2.029307 GCTACCATCTCCCACCGGAC 62.029 65.000 9.46 0.00 33.32 4.79
295 296 0.686441 CTACCATCTCCCACCGGACA 60.686 60.000 9.46 0.00 33.32 4.02
296 297 0.686441 TACCATCTCCCACCGGACAG 60.686 60.000 9.46 0.00 33.32 3.51
297 298 1.685765 CCATCTCCCACCGGACAGA 60.686 63.158 9.46 3.41 33.32 3.41
298 299 1.050988 CCATCTCCCACCGGACAGAT 61.051 60.000 9.46 5.91 33.32 2.90
299 300 0.390860 CATCTCCCACCGGACAGATC 59.609 60.000 9.46 0.00 33.32 2.75
300 301 0.760945 ATCTCCCACCGGACAGATCC 60.761 60.000 9.46 0.00 42.28 3.36
301 302 1.685765 CTCCCACCGGACAGATCCA 60.686 63.158 9.46 0.00 46.67 3.41
302 303 1.229368 TCCCACCGGACAGATCCAA 60.229 57.895 9.46 0.00 46.67 3.53
303 304 0.838554 TCCCACCGGACAGATCCAAA 60.839 55.000 9.46 0.00 46.67 3.28
304 305 0.037590 CCCACCGGACAGATCCAAAA 59.962 55.000 9.46 0.00 46.67 2.44
305 306 1.165270 CCACCGGACAGATCCAAAAC 58.835 55.000 9.46 0.00 46.67 2.43
306 307 1.544537 CCACCGGACAGATCCAAAACA 60.545 52.381 9.46 0.00 46.67 2.83
307 308 1.535462 CACCGGACAGATCCAAAACAC 59.465 52.381 9.46 0.00 46.67 3.32
308 309 1.165270 CCGGACAGATCCAAAACACC 58.835 55.000 0.00 0.00 46.67 4.16
309 310 1.544537 CCGGACAGATCCAAAACACCA 60.545 52.381 0.00 0.00 46.67 4.17
310 311 1.535462 CGGACAGATCCAAAACACCAC 59.465 52.381 0.00 0.00 46.67 4.16
311 312 1.886542 GGACAGATCCAAAACACCACC 59.113 52.381 0.00 0.00 45.47 4.61
312 313 2.582052 GACAGATCCAAAACACCACCA 58.418 47.619 0.00 0.00 0.00 4.17
313 314 2.955660 GACAGATCCAAAACACCACCAA 59.044 45.455 0.00 0.00 0.00 3.67
314 315 2.693074 ACAGATCCAAAACACCACCAAC 59.307 45.455 0.00 0.00 0.00 3.77
315 316 1.953686 AGATCCAAAACACCACCAACG 59.046 47.619 0.00 0.00 0.00 4.10
316 317 0.387565 ATCCAAAACACCACCAACGC 59.612 50.000 0.00 0.00 0.00 4.84
317 318 0.965866 TCCAAAACACCACCAACGCA 60.966 50.000 0.00 0.00 0.00 5.24
318 319 0.108615 CCAAAACACCACCAACGCAA 60.109 50.000 0.00 0.00 0.00 4.85
319 320 0.995728 CAAAACACCACCAACGCAAC 59.004 50.000 0.00 0.00 0.00 4.17
320 321 0.456995 AAAACACCACCAACGCAACG 60.457 50.000 0.00 0.00 0.00 4.10
321 322 1.306642 AAACACCACCAACGCAACGA 61.307 50.000 0.00 0.00 0.00 3.85
322 323 1.306642 AACACCACCAACGCAACGAA 61.307 50.000 0.00 0.00 0.00 3.85
323 324 1.306642 ACACCACCAACGCAACGAAA 61.307 50.000 0.00 0.00 0.00 3.46
324 325 0.863957 CACCACCAACGCAACGAAAC 60.864 55.000 0.00 0.00 0.00 2.78
325 326 1.652930 CCACCAACGCAACGAAACG 60.653 57.895 0.00 0.00 0.00 3.60
326 327 2.023601 ACCAACGCAACGAAACGC 59.976 55.556 0.00 0.00 0.00 4.84
332 333 4.615834 GCAACGAAACGCGCCCAA 62.616 61.111 5.73 0.00 46.04 4.12
333 334 2.724358 CAACGAAACGCGCCCAAC 60.724 61.111 5.73 0.00 46.04 3.77
334 335 3.956317 AACGAAACGCGCCCAACC 61.956 61.111 5.73 0.00 46.04 3.77
337 338 3.292159 GAAACGCGCCCAACCCTT 61.292 61.111 5.73 0.00 0.00 3.95
338 339 2.835895 AAACGCGCCCAACCCTTT 60.836 55.556 5.73 0.00 0.00 3.11
339 340 2.358193 GAAACGCGCCCAACCCTTTT 62.358 55.000 5.73 0.00 0.00 2.27
340 341 1.108132 AAACGCGCCCAACCCTTTTA 61.108 50.000 5.73 0.00 0.00 1.52
341 342 1.520600 AACGCGCCCAACCCTTTTAG 61.521 55.000 5.73 0.00 0.00 1.85
342 343 1.969589 CGCGCCCAACCCTTTTAGT 60.970 57.895 0.00 0.00 0.00 2.24
343 344 0.674269 CGCGCCCAACCCTTTTAGTA 60.674 55.000 0.00 0.00 0.00 1.82
344 345 1.536940 GCGCCCAACCCTTTTAGTAA 58.463 50.000 0.00 0.00 0.00 2.24
345 346 2.097036 GCGCCCAACCCTTTTAGTAAT 58.903 47.619 0.00 0.00 0.00 1.89
346 347 3.281158 GCGCCCAACCCTTTTAGTAATA 58.719 45.455 0.00 0.00 0.00 0.98
347 348 3.695556 GCGCCCAACCCTTTTAGTAATAA 59.304 43.478 0.00 0.00 0.00 1.40
348 349 4.201980 GCGCCCAACCCTTTTAGTAATAAG 60.202 45.833 0.00 0.00 0.00 1.73
366 367 9.319143 AGTAATAAGAATTGTAGATGCTCACAC 57.681 33.333 0.00 0.00 0.00 3.82
372 373 3.683365 TGTAGATGCTCACACACACAT 57.317 42.857 0.00 0.00 0.00 3.21
377 380 4.697514 AGATGCTCACACACACATATACC 58.302 43.478 0.00 0.00 0.00 2.73
385 388 5.717654 TCACACACACATATACCCTCACTTA 59.282 40.000 0.00 0.00 0.00 2.24
393 396 7.088905 CACATATACCCTCACTTATACGAACC 58.911 42.308 0.00 0.00 0.00 3.62
413 416 1.490693 CGCTCGCACACACCATATCC 61.491 60.000 0.00 0.00 0.00 2.59
429 432 1.326213 ATCCTGTGAGCACCTCCGAG 61.326 60.000 0.00 0.00 0.00 4.63
430 433 1.979155 CCTGTGAGCACCTCCGAGA 60.979 63.158 0.00 0.00 0.00 4.04
437 440 0.259065 AGCACCTCCGAGATACTGGA 59.741 55.000 0.00 0.00 0.00 3.86
441 444 2.709170 CTCCGAGATACTGGAGCGT 58.291 57.895 0.00 0.00 44.83 5.07
448 451 3.182967 GAGATACTGGAGCGTCACAAAG 58.817 50.000 0.00 0.00 0.00 2.77
450 453 3.762288 AGATACTGGAGCGTCACAAAGTA 59.238 43.478 0.00 0.00 0.00 2.24
453 456 3.067106 ACTGGAGCGTCACAAAGTATTG 58.933 45.455 0.00 0.00 42.46 1.90
505 508 4.608948 AGTCAAGAGGAACGTCATCTTT 57.391 40.909 10.70 0.00 44.01 2.52
526 529 3.130633 TCACTGAACGAACATTGTGAGG 58.869 45.455 0.00 0.00 31.87 3.86
530 533 3.138304 TGAACGAACATTGTGAGGAAGG 58.862 45.455 0.00 0.00 0.00 3.46
575 578 2.388735 ACCATCGATGCCAAGTCTAGA 58.611 47.619 20.25 0.00 0.00 2.43
597 600 7.981102 AGAACTTGAAACCTAATGGACTAAC 57.019 36.000 0.00 0.00 37.04 2.34
617 620 4.086706 ACTTCACCACAAGGAACCTAAG 57.913 45.455 0.00 0.00 38.69 2.18
618 621 3.458487 ACTTCACCACAAGGAACCTAAGT 59.542 43.478 0.00 0.00 38.69 2.24
619 622 4.079958 ACTTCACCACAAGGAACCTAAGTT 60.080 41.667 0.00 0.00 39.54 2.66
656 660 1.331756 CACTTCACTCACCACACTTGC 59.668 52.381 0.00 0.00 0.00 4.01
682 692 5.216566 TCTAATGTCTATTTTGCACGTGC 57.783 39.130 33.11 33.11 42.50 5.34
698 709 2.159761 ACGTGCGTTCCACAAAATATCG 60.160 45.455 0.00 0.00 44.91 2.92
701 712 2.092995 TGCGTTCCACAAAATATCGACG 59.907 45.455 0.00 0.00 0.00 5.12
702 713 2.093152 GCGTTCCACAAAATATCGACGT 59.907 45.455 0.00 0.00 0.00 4.34
743 754 1.209504 TCGCAGCTAAAGGGCAATAGT 59.790 47.619 0.00 0.00 34.17 2.12
744 755 1.331756 CGCAGCTAAAGGGCAATAGTG 59.668 52.381 0.00 0.00 34.17 2.74
745 756 2.369394 GCAGCTAAAGGGCAATAGTGT 58.631 47.619 0.00 0.00 34.17 3.55
746 757 2.098117 GCAGCTAAAGGGCAATAGTGTG 59.902 50.000 0.00 0.00 34.17 3.82
747 758 3.609853 CAGCTAAAGGGCAATAGTGTGA 58.390 45.455 0.00 0.00 34.17 3.58
748 759 3.375299 CAGCTAAAGGGCAATAGTGTGAC 59.625 47.826 0.00 0.00 34.17 3.67
749 760 2.351726 GCTAAAGGGCAATAGTGTGACG 59.648 50.000 0.00 0.00 0.00 4.35
750 761 2.561478 AAAGGGCAATAGTGTGACGT 57.439 45.000 0.00 0.00 0.00 4.34
751 762 1.808411 AAGGGCAATAGTGTGACGTG 58.192 50.000 0.00 0.00 0.00 4.49
752 763 0.036388 AGGGCAATAGTGTGACGTGG 60.036 55.000 0.00 0.00 0.00 4.94
753 764 1.644786 GGGCAATAGTGTGACGTGGC 61.645 60.000 0.00 0.00 0.00 5.01
754 765 1.419922 GCAATAGTGTGACGTGGCG 59.580 57.895 0.00 0.00 0.00 5.69
755 766 1.966493 GCAATAGTGTGACGTGGCGG 61.966 60.000 0.00 0.00 0.00 6.13
756 767 1.740296 AATAGTGTGACGTGGCGGC 60.740 57.895 0.00 0.00 34.27 6.53
757 768 3.659089 ATAGTGTGACGTGGCGGCC 62.659 63.158 13.32 13.32 31.60 6.13
771 782 4.798682 GGCCCGGGGAGGAAGAGA 62.799 72.222 25.28 0.00 45.00 3.10
772 783 3.157949 GCCCGGGGAGGAAGAGAG 61.158 72.222 25.28 0.00 45.00 3.20
773 784 2.690452 CCCGGGGAGGAAGAGAGA 59.310 66.667 14.71 0.00 45.00 3.10
774 785 1.456705 CCCGGGGAGGAAGAGAGAG 60.457 68.421 14.71 0.00 45.00 3.20
775 786 1.615814 CCGGGGAGGAAGAGAGAGA 59.384 63.158 0.00 0.00 45.00 3.10
776 787 0.467290 CCGGGGAGGAAGAGAGAGAG 60.467 65.000 0.00 0.00 45.00 3.20
805 816 4.798682 GGCCCGGGGAGGAAGAGA 62.799 72.222 25.28 0.00 45.00 3.10
809 820 1.615814 CCGGGGAGGAAGAGAGAGA 59.384 63.158 0.00 0.00 45.00 3.10
814 825 1.355210 GAGGAAGAGAGAGAGCGCG 59.645 63.158 0.00 0.00 0.00 6.86
815 826 2.278531 GGAAGAGAGAGAGCGCGC 60.279 66.667 26.66 26.66 0.00 6.86
987 1002 4.457496 ATCCTGAGGCACGTGCGG 62.457 66.667 32.35 26.71 43.26 5.69
1015 1030 1.001641 GGCATGCAGGAGTTCCAGT 60.002 57.895 21.36 0.00 38.89 4.00
1302 1326 3.878519 GCCTCCTCCGACGTCGAG 61.879 72.222 37.65 28.65 43.02 4.04
1382 1406 4.154347 CTCCAGCCTCACCTCCGC 62.154 72.222 0.00 0.00 0.00 5.54
1432 1456 4.648626 ACGCTGGTGCATGTGCCT 62.649 61.111 2.07 0.00 41.18 4.75
1539 1563 2.433491 CCGATGTTCGCCGACCAA 60.433 61.111 0.00 0.00 38.82 3.67
1620 1644 4.052229 AAGGCCGAGGACGACGTG 62.052 66.667 4.58 0.00 42.66 4.49
1755 1779 2.202623 GCGACGGTGATCGAAGCT 60.203 61.111 0.00 0.00 45.13 3.74
1971 1995 6.207025 CCACCGCTGTCTTAATCTATACTACT 59.793 42.308 0.00 0.00 0.00 2.57
1972 1996 7.389884 CCACCGCTGTCTTAATCTATACTACTA 59.610 40.741 0.00 0.00 0.00 1.82
1973 1997 8.229137 CACCGCTGTCTTAATCTATACTACTAC 58.771 40.741 0.00 0.00 0.00 2.73
2040 2065 1.923356 TCTTTCCATGGGGCAGTTTC 58.077 50.000 13.02 0.00 0.00 2.78
2166 2203 9.416794 GTGTAAATATCATGATCAGTACTCCTG 57.583 37.037 12.53 0.00 42.97 3.86
2460 2835 6.478016 GCTGTGCATTCTTTCTTTCTTTCTTT 59.522 34.615 0.00 0.00 0.00 2.52
2513 2890 6.214399 AGAGTCGTCCGATAATTATCAAACC 58.786 40.000 22.22 9.56 32.98 3.27
2636 3020 8.283992 GTCATTGATTCATCATCATCACTTCTC 58.716 37.037 0.00 0.00 41.82 2.87
2637 3021 8.211629 TCATTGATTCATCATCATCACTTCTCT 58.788 33.333 0.00 0.00 41.82 3.10
2639 3023 7.120923 TGATTCATCATCATCACTTCTCTCA 57.879 36.000 0.00 0.00 36.94 3.27
2640 3024 7.210873 TGATTCATCATCATCACTTCTCTCAG 58.789 38.462 0.00 0.00 36.94 3.35
2642 3026 6.980416 TCATCATCATCACTTCTCTCAGAT 57.020 37.500 0.00 0.00 0.00 2.90
2671 3055 2.068837 TCGACTTTACCGCAAACGAT 57.931 45.000 0.00 0.00 43.93 3.73
2689 3073 0.250124 ATCGCCGACCAAGTTCACAA 60.250 50.000 0.00 0.00 0.00 3.33
2718 3102 3.071457 TGAGTGAGAAGGCACATGAAGAA 59.929 43.478 0.00 0.00 41.19 2.52
2747 3131 0.675633 AAGCAATTGACCACCTGTGC 59.324 50.000 10.34 0.00 0.00 4.57
2751 3135 0.185901 AATTGACCACCTGTGCCAGT 59.814 50.000 2.18 0.00 0.00 4.00
2797 3181 0.390998 GAGCCACAGAGGAGAACTGC 60.391 60.000 0.00 0.00 41.22 4.40
2811 3195 4.431524 CTGCCCCCTCCCCCACTA 62.432 72.222 0.00 0.00 0.00 2.74
2817 3201 2.064581 CCCTCCCCCACTACCTTCG 61.065 68.421 0.00 0.00 0.00 3.79
2845 3229 2.202703 CCGCTGCCACTACGGTAC 60.203 66.667 0.00 0.00 42.01 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.288395 CCAAAACCATCACACTTGAGGC 60.288 50.000 0.00 0.00 34.35 4.70
1 2 3.221771 TCCAAAACCATCACACTTGAGG 58.778 45.455 0.00 0.00 34.35 3.86
2 3 5.458041 AATCCAAAACCATCACACTTGAG 57.542 39.130 0.00 0.00 34.35 3.02
3 4 5.867903 AAATCCAAAACCATCACACTTGA 57.132 34.783 0.00 0.00 35.73 3.02
4 5 6.923928 AAAAATCCAAAACCATCACACTTG 57.076 33.333 0.00 0.00 0.00 3.16
27 28 4.698201 GGAATCACCCCTTTTCCAAAAA 57.302 40.909 0.00 0.00 39.00 1.94
40 41 3.090532 AGAGGCCGGGGAATCACC 61.091 66.667 2.18 0.00 38.08 4.02
41 42 2.190578 CAGAGGCCGGGGAATCAC 59.809 66.667 2.18 0.00 0.00 3.06
42 43 3.797353 GCAGAGGCCGGGGAATCA 61.797 66.667 2.18 0.00 0.00 2.57
43 44 3.125376 ATGCAGAGGCCGGGGAATC 62.125 63.158 2.18 0.00 40.13 2.52
44 45 3.099170 ATGCAGAGGCCGGGGAAT 61.099 61.111 2.18 0.00 40.13 3.01
45 46 3.797353 GATGCAGAGGCCGGGGAA 61.797 66.667 2.18 0.00 40.13 3.97
47 48 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
48 49 4.559063 CCTGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
49 50 3.790437 ACCTGATGCAGAGGCCGG 61.790 66.667 13.39 0.00 40.13 6.13
50 51 2.513204 CACCTGATGCAGAGGCCG 60.513 66.667 13.39 3.02 40.13 6.13
51 52 1.992519 ATCCACCTGATGCAGAGGCC 61.993 60.000 13.39 0.00 40.13 5.19
52 53 0.818445 CATCCACCTGATGCAGAGGC 60.818 60.000 13.39 0.00 44.16 4.70
53 54 3.398694 CATCCACCTGATGCAGAGG 57.601 57.895 12.14 12.14 44.16 3.69
60 61 0.250467 GCCGTATGCATCCACCTGAT 60.250 55.000 0.19 0.00 40.77 2.90
61 62 1.146041 GCCGTATGCATCCACCTGA 59.854 57.895 0.19 0.00 40.77 3.86
62 63 1.893808 GGCCGTATGCATCCACCTG 60.894 63.158 0.19 0.00 43.89 4.00
63 64 2.374525 TGGCCGTATGCATCCACCT 61.375 57.895 0.19 0.00 43.89 4.00
64 65 2.186826 GTGGCCGTATGCATCCACC 61.187 63.158 19.75 11.28 42.25 4.61
65 66 0.748005 AAGTGGCCGTATGCATCCAC 60.748 55.000 21.88 21.88 46.93 4.02
66 67 0.833949 TAAGTGGCCGTATGCATCCA 59.166 50.000 0.19 0.56 43.89 3.41
67 68 1.070134 TCTAAGTGGCCGTATGCATCC 59.930 52.381 0.19 0.00 43.89 3.51
68 69 2.526304 TCTAAGTGGCCGTATGCATC 57.474 50.000 0.19 0.00 43.89 3.91
69 70 4.617253 TTATCTAAGTGGCCGTATGCAT 57.383 40.909 3.79 3.79 43.89 3.96
70 71 4.409718 TTTATCTAAGTGGCCGTATGCA 57.590 40.909 0.00 0.00 43.89 3.96
71 72 7.429636 TTTATTTATCTAAGTGGCCGTATGC 57.570 36.000 0.00 0.00 40.16 3.14
74 75 9.715121 CCTATTTTATTTATCTAAGTGGCCGTA 57.285 33.333 0.00 0.00 0.00 4.02
75 76 8.215736 ACCTATTTTATTTATCTAAGTGGCCGT 58.784 33.333 0.00 0.00 0.00 5.68
76 77 8.617290 ACCTATTTTATTTATCTAAGTGGCCG 57.383 34.615 0.00 0.00 0.00 6.13
92 93 9.757227 CTTTTCAACATTGTGGAACCTATTTTA 57.243 29.630 6.10 0.00 34.36 1.52
93 94 8.264347 ACTTTTCAACATTGTGGAACCTATTTT 58.736 29.630 6.10 0.00 34.36 1.82
94 95 7.791029 ACTTTTCAACATTGTGGAACCTATTT 58.209 30.769 6.10 0.00 34.36 1.40
95 96 7.360113 ACTTTTCAACATTGTGGAACCTATT 57.640 32.000 6.10 0.00 34.36 1.73
96 97 6.293955 CGACTTTTCAACATTGTGGAACCTAT 60.294 38.462 6.10 0.00 34.36 2.57
97 98 5.008217 CGACTTTTCAACATTGTGGAACCTA 59.992 40.000 6.10 0.00 34.36 3.08
98 99 4.202010 CGACTTTTCAACATTGTGGAACCT 60.202 41.667 6.10 0.00 34.36 3.50
99 100 4.041723 CGACTTTTCAACATTGTGGAACC 58.958 43.478 6.10 0.00 34.36 3.62
100 101 4.668289 ACGACTTTTCAACATTGTGGAAC 58.332 39.130 6.10 0.00 37.35 3.62
101 102 4.974368 ACGACTTTTCAACATTGTGGAA 57.026 36.364 2.33 2.33 0.00 3.53
102 103 6.438259 TTTACGACTTTTCAACATTGTGGA 57.562 33.333 0.00 0.00 0.00 4.02
103 104 6.970043 TCTTTTACGACTTTTCAACATTGTGG 59.030 34.615 0.00 0.00 0.00 4.17
104 105 7.962934 TCTTTTACGACTTTTCAACATTGTG 57.037 32.000 0.00 0.00 0.00 3.33
105 106 8.973835 TTTCTTTTACGACTTTTCAACATTGT 57.026 26.923 0.00 0.00 0.00 2.71
106 107 9.670180 GTTTTCTTTTACGACTTTTCAACATTG 57.330 29.630 0.00 0.00 0.00 2.82
107 108 9.634163 AGTTTTCTTTTACGACTTTTCAACATT 57.366 25.926 0.00 0.00 0.00 2.71
109 110 9.545611 GTAGTTTTCTTTTACGACTTTTCAACA 57.454 29.630 0.00 0.00 0.00 3.33
110 111 8.718808 CGTAGTTTTCTTTTACGACTTTTCAAC 58.281 33.333 0.00 0.00 41.86 3.18
111 112 8.442384 ACGTAGTTTTCTTTTACGACTTTTCAA 58.558 29.630 9.86 0.00 37.78 2.69
112 113 7.962917 ACGTAGTTTTCTTTTACGACTTTTCA 58.037 30.769 9.86 0.00 37.78 2.69
128 129 8.751666 GGTCTATGTGAGCTCGACGTAGTTTT 62.752 46.154 26.92 5.44 39.86 2.43
129 130 7.378008 GGTCTATGTGAGCTCGACGTAGTTT 62.378 48.000 26.92 6.50 39.86 2.66
130 131 5.974067 GGTCTATGTGAGCTCGACGTAGTT 61.974 50.000 26.92 7.66 39.86 2.24
131 132 4.536005 GGTCTATGTGAGCTCGACGTAGT 61.536 52.174 26.92 12.57 41.59 2.73
132 133 2.032722 GGTCTATGTGAGCTCGACGTAG 60.033 54.545 24.71 24.71 39.86 3.51
133 134 1.938577 GGTCTATGTGAGCTCGACGTA 59.061 52.381 9.64 12.37 39.86 3.57
134 135 0.733729 GGTCTATGTGAGCTCGACGT 59.266 55.000 9.64 11.91 39.86 4.34
135 136 3.535691 GGTCTATGTGAGCTCGACG 57.464 57.895 9.64 0.00 39.86 5.12
141 142 1.532090 CGTGACGAGGTCTATGTGAGC 60.532 57.143 0.00 0.00 43.05 4.26
142 143 2.007608 TCGTGACGAGGTCTATGTGAG 58.992 52.381 2.39 0.00 33.15 3.51
143 144 2.103537 TCGTGACGAGGTCTATGTGA 57.896 50.000 2.39 0.00 33.15 3.58
144 145 2.913777 TTCGTGACGAGGTCTATGTG 57.086 50.000 8.02 0.00 37.14 3.21
145 146 3.928727 TTTTCGTGACGAGGTCTATGT 57.071 42.857 8.02 0.00 37.14 2.29
146 147 5.337554 TGTATTTTCGTGACGAGGTCTATG 58.662 41.667 8.02 0.00 37.14 2.23
147 148 5.571784 TGTATTTTCGTGACGAGGTCTAT 57.428 39.130 8.02 1.69 37.14 1.98
148 149 5.375417 TTGTATTTTCGTGACGAGGTCTA 57.625 39.130 8.02 0.00 37.14 2.59
149 150 3.928727 TGTATTTTCGTGACGAGGTCT 57.071 42.857 8.02 0.00 37.14 3.85
150 151 4.977741 TTTGTATTTTCGTGACGAGGTC 57.022 40.909 8.02 0.00 37.14 3.85
151 152 5.738118 TTTTTGTATTTTCGTGACGAGGT 57.262 34.783 8.02 0.92 37.14 3.85
177 178 1.510844 CCGGTTGTGGCTTTATGGC 59.489 57.895 0.00 0.00 42.18 4.40
186 187 4.641645 TCTGCCAGCCGGTTGTGG 62.642 66.667 17.69 15.43 36.85 4.17
187 188 1.733402 TTTTCTGCCAGCCGGTTGTG 61.733 55.000 17.69 9.73 33.28 3.33
188 189 1.040339 TTTTTCTGCCAGCCGGTTGT 61.040 50.000 17.69 0.00 33.28 3.32
189 190 0.318120 ATTTTTCTGCCAGCCGGTTG 59.682 50.000 11.98 11.98 33.28 3.77
190 191 1.818674 CTATTTTTCTGCCAGCCGGTT 59.181 47.619 1.90 0.00 33.28 4.44
191 192 1.463674 CTATTTTTCTGCCAGCCGGT 58.536 50.000 1.90 0.00 33.28 5.28
192 193 0.740737 CCTATTTTTCTGCCAGCCGG 59.259 55.000 0.00 0.00 0.00 6.13
193 194 1.463674 ACCTATTTTTCTGCCAGCCG 58.536 50.000 0.00 0.00 0.00 5.52
194 195 3.319122 CCATACCTATTTTTCTGCCAGCC 59.681 47.826 0.00 0.00 0.00 4.85
195 196 4.207165 TCCATACCTATTTTTCTGCCAGC 58.793 43.478 0.00 0.00 0.00 4.85
196 197 6.378280 AGTTTCCATACCTATTTTTCTGCCAG 59.622 38.462 0.00 0.00 0.00 4.85
197 198 6.252995 AGTTTCCATACCTATTTTTCTGCCA 58.747 36.000 0.00 0.00 0.00 4.92
198 199 6.775594 AGTTTCCATACCTATTTTTCTGCC 57.224 37.500 0.00 0.00 0.00 4.85
202 203 9.529325 GGCAATTAGTTTCCATACCTATTTTTC 57.471 33.333 0.00 0.00 0.00 2.29
203 204 9.041354 TGGCAATTAGTTTCCATACCTATTTTT 57.959 29.630 0.00 0.00 0.00 1.94
204 205 8.602472 TGGCAATTAGTTTCCATACCTATTTT 57.398 30.769 0.00 0.00 0.00 1.82
205 206 8.602472 TTGGCAATTAGTTTCCATACCTATTT 57.398 30.769 0.00 0.00 0.00 1.40
206 207 8.782137 ATTGGCAATTAGTTTCCATACCTATT 57.218 30.769 6.96 0.00 0.00 1.73
207 208 7.451566 GGATTGGCAATTAGTTTCCATACCTAT 59.548 37.037 14.93 0.00 0.00 2.57
208 209 6.775629 GGATTGGCAATTAGTTTCCATACCTA 59.224 38.462 14.93 0.00 0.00 3.08
209 210 5.598417 GGATTGGCAATTAGTTTCCATACCT 59.402 40.000 14.93 0.00 0.00 3.08
210 211 5.598417 AGGATTGGCAATTAGTTTCCATACC 59.402 40.000 14.93 6.14 0.00 2.73
211 212 6.715347 AGGATTGGCAATTAGTTTCCATAC 57.285 37.500 14.93 0.00 0.00 2.39
213 214 7.919385 AATAGGATTGGCAATTAGTTTCCAT 57.081 32.000 14.93 4.67 0.00 3.41
214 215 7.836685 TGTAATAGGATTGGCAATTAGTTTCCA 59.163 33.333 14.93 4.75 0.00 3.53
215 216 8.232913 TGTAATAGGATTGGCAATTAGTTTCC 57.767 34.615 14.93 10.58 0.00 3.13
216 217 9.683069 CATGTAATAGGATTGGCAATTAGTTTC 57.317 33.333 14.93 0.60 0.00 2.78
217 218 9.420118 TCATGTAATAGGATTGGCAATTAGTTT 57.580 29.630 14.93 8.97 0.00 2.66
218 219 8.850156 GTCATGTAATAGGATTGGCAATTAGTT 58.150 33.333 14.93 9.64 0.00 2.24
219 220 7.448469 GGTCATGTAATAGGATTGGCAATTAGT 59.552 37.037 14.93 5.69 0.00 2.24
220 221 7.361201 CGGTCATGTAATAGGATTGGCAATTAG 60.361 40.741 14.93 0.00 0.00 1.73
221 222 6.429692 CGGTCATGTAATAGGATTGGCAATTA 59.570 38.462 14.93 4.07 0.00 1.40
222 223 5.241506 CGGTCATGTAATAGGATTGGCAATT 59.758 40.000 14.93 1.59 0.00 2.32
223 224 4.761739 CGGTCATGTAATAGGATTGGCAAT 59.238 41.667 13.54 13.54 0.00 3.56
224 225 4.133820 CGGTCATGTAATAGGATTGGCAA 58.866 43.478 0.68 0.68 0.00 4.52
225 226 3.738982 CGGTCATGTAATAGGATTGGCA 58.261 45.455 0.00 0.00 0.00 4.92
226 227 2.484264 GCGGTCATGTAATAGGATTGGC 59.516 50.000 0.00 0.00 0.00 4.52
227 228 3.074412 GGCGGTCATGTAATAGGATTGG 58.926 50.000 0.00 0.00 0.00 3.16
228 229 3.738982 TGGCGGTCATGTAATAGGATTG 58.261 45.455 0.00 0.00 0.00 2.67
229 230 4.565652 GGATGGCGGTCATGTAATAGGATT 60.566 45.833 0.00 0.00 35.97 3.01
230 231 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
231 232 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
232 233 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
233 234 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
234 235 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
235 236 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
236 237 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
237 238 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
238 239 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
239 240 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
240 241 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
241 242 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
242 243 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
243 244 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
244 245 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
245 246 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
246 247 0.894835 ATTCAACCGGTTTGGATGGC 59.105 50.000 19.55 0.00 40.78 4.40
247 248 5.183140 GGATATATTCAACCGGTTTGGATGG 59.817 44.000 19.55 5.30 40.78 3.51
248 249 5.183140 GGGATATATTCAACCGGTTTGGATG 59.817 44.000 19.55 7.05 41.73 3.51
249 250 5.321927 GGGATATATTCAACCGGTTTGGAT 58.678 41.667 19.55 15.43 42.00 3.41
250 251 4.721132 GGGATATATTCAACCGGTTTGGA 58.279 43.478 19.55 10.51 42.00 3.53
251 252 3.500680 CGGGATATATTCAACCGGTTTGG 59.499 47.826 19.55 7.84 46.41 3.28
252 253 3.058501 GCGGGATATATTCAACCGGTTTG 60.059 47.826 19.55 13.53 44.39 2.93
253 254 3.143728 GCGGGATATATTCAACCGGTTT 58.856 45.455 19.55 6.11 44.39 3.27
254 255 2.774687 GCGGGATATATTCAACCGGTT 58.225 47.619 15.86 15.86 44.39 4.44
255 256 1.337447 CGCGGGATATATTCAACCGGT 60.337 52.381 0.00 0.00 44.39 5.28
256 257 1.355971 CGCGGGATATATTCAACCGG 58.644 55.000 0.00 0.00 44.39 5.28
257 258 0.719465 GCGCGGGATATATTCAACCG 59.281 55.000 8.83 12.10 46.78 4.44
258 259 2.094762 AGCGCGGGATATATTCAACC 57.905 50.000 8.83 0.00 0.00 3.77
259 260 2.928116 GGTAGCGCGGGATATATTCAAC 59.072 50.000 8.83 0.00 0.00 3.18
260 261 2.563620 TGGTAGCGCGGGATATATTCAA 59.436 45.455 8.83 0.00 0.00 2.69
261 262 2.172679 TGGTAGCGCGGGATATATTCA 58.827 47.619 8.83 0.00 0.00 2.57
262 263 2.953466 TGGTAGCGCGGGATATATTC 57.047 50.000 8.83 0.00 0.00 1.75
263 264 3.031736 AGATGGTAGCGCGGGATATATT 58.968 45.455 8.83 0.00 0.00 1.28
264 265 2.623889 GAGATGGTAGCGCGGGATATAT 59.376 50.000 8.83 0.10 0.00 0.86
265 266 2.022195 GAGATGGTAGCGCGGGATATA 58.978 52.381 8.83 0.00 0.00 0.86
266 267 0.818296 GAGATGGTAGCGCGGGATAT 59.182 55.000 8.83 0.00 0.00 1.63
267 268 1.248785 GGAGATGGTAGCGCGGGATA 61.249 60.000 8.83 0.00 0.00 2.59
268 269 2.574955 GGAGATGGTAGCGCGGGAT 61.575 63.158 8.83 0.00 0.00 3.85
269 270 3.224324 GGAGATGGTAGCGCGGGA 61.224 66.667 8.83 0.00 0.00 5.14
270 271 4.301027 GGGAGATGGTAGCGCGGG 62.301 72.222 8.83 0.00 0.00 6.13
271 272 3.536917 TGGGAGATGGTAGCGCGG 61.537 66.667 8.83 0.00 0.00 6.46
272 273 2.279517 GTGGGAGATGGTAGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
273 274 2.109181 GGTGGGAGATGGTAGCGC 59.891 66.667 0.00 0.00 0.00 5.92
274 275 2.417516 CGGTGGGAGATGGTAGCG 59.582 66.667 0.00 0.00 0.00 4.26
275 276 1.760875 TCCGGTGGGAGATGGTAGC 60.761 63.158 0.00 0.00 37.43 3.58
276 277 0.686441 TGTCCGGTGGGAGATGGTAG 60.686 60.000 0.00 0.00 44.97 3.18
277 278 0.686441 CTGTCCGGTGGGAGATGGTA 60.686 60.000 0.00 0.00 44.97 3.25
278 279 1.990060 CTGTCCGGTGGGAGATGGT 60.990 63.158 0.00 0.00 44.97 3.55
279 280 1.050988 ATCTGTCCGGTGGGAGATGG 61.051 60.000 0.00 0.00 44.97 3.51
280 281 0.390860 GATCTGTCCGGTGGGAGATG 59.609 60.000 0.00 0.00 44.97 2.90
281 282 0.760945 GGATCTGTCCGGTGGGAGAT 60.761 60.000 0.00 4.16 44.97 2.75
282 283 1.381327 GGATCTGTCCGGTGGGAGA 60.381 63.158 0.00 0.00 44.97 3.71
283 284 3.221222 GGATCTGTCCGGTGGGAG 58.779 66.667 0.00 0.00 44.97 4.30
291 292 1.886542 GGTGGTGTTTTGGATCTGTCC 59.113 52.381 0.00 0.00 45.31 4.02
292 293 2.582052 TGGTGGTGTTTTGGATCTGTC 58.418 47.619 0.00 0.00 0.00 3.51
293 294 2.693074 GTTGGTGGTGTTTTGGATCTGT 59.307 45.455 0.00 0.00 0.00 3.41
294 295 2.287547 CGTTGGTGGTGTTTTGGATCTG 60.288 50.000 0.00 0.00 0.00 2.90
295 296 1.953686 CGTTGGTGGTGTTTTGGATCT 59.046 47.619 0.00 0.00 0.00 2.75
296 297 1.601914 GCGTTGGTGGTGTTTTGGATC 60.602 52.381 0.00 0.00 0.00 3.36
297 298 0.387565 GCGTTGGTGGTGTTTTGGAT 59.612 50.000 0.00 0.00 0.00 3.41
298 299 0.965866 TGCGTTGGTGGTGTTTTGGA 60.966 50.000 0.00 0.00 0.00 3.53
299 300 0.108615 TTGCGTTGGTGGTGTTTTGG 60.109 50.000 0.00 0.00 0.00 3.28
300 301 0.995728 GTTGCGTTGGTGGTGTTTTG 59.004 50.000 0.00 0.00 0.00 2.44
301 302 0.456995 CGTTGCGTTGGTGGTGTTTT 60.457 50.000 0.00 0.00 0.00 2.43
302 303 1.137825 CGTTGCGTTGGTGGTGTTT 59.862 52.632 0.00 0.00 0.00 2.83
303 304 1.306642 TTCGTTGCGTTGGTGGTGTT 61.307 50.000 0.00 0.00 0.00 3.32
304 305 1.306642 TTTCGTTGCGTTGGTGGTGT 61.307 50.000 0.00 0.00 0.00 4.16
305 306 0.863957 GTTTCGTTGCGTTGGTGGTG 60.864 55.000 0.00 0.00 0.00 4.17
306 307 1.430228 GTTTCGTTGCGTTGGTGGT 59.570 52.632 0.00 0.00 0.00 4.16
307 308 1.652930 CGTTTCGTTGCGTTGGTGG 60.653 57.895 0.00 0.00 0.00 4.61
308 309 2.283058 GCGTTTCGTTGCGTTGGTG 61.283 57.895 0.00 0.00 0.00 4.17
309 310 2.023601 GCGTTTCGTTGCGTTGGT 59.976 55.556 0.00 0.00 0.00 3.67
315 316 4.615834 TTGGGCGCGTTTCGTTGC 62.616 61.111 8.43 0.00 41.07 4.17
316 317 2.724358 GTTGGGCGCGTTTCGTTG 60.724 61.111 8.43 0.00 41.07 4.10
317 318 3.956317 GGTTGGGCGCGTTTCGTT 61.956 61.111 8.43 0.00 41.07 3.85
320 321 2.358193 AAAAGGGTTGGGCGCGTTTC 62.358 55.000 8.43 0.00 37.19 2.78
321 322 1.108132 TAAAAGGGTTGGGCGCGTTT 61.108 50.000 8.43 0.00 42.27 3.60
322 323 1.520600 CTAAAAGGGTTGGGCGCGTT 61.521 55.000 8.43 0.00 33.68 4.84
323 324 1.969589 CTAAAAGGGTTGGGCGCGT 60.970 57.895 8.43 0.00 34.93 6.01
324 325 0.674269 TACTAAAAGGGTTGGGCGCG 60.674 55.000 0.00 0.00 34.93 6.86
325 326 1.536940 TTACTAAAAGGGTTGGGCGC 58.463 50.000 0.00 0.00 0.00 6.53
326 327 5.187687 TCTTATTACTAAAAGGGTTGGGCG 58.812 41.667 0.00 0.00 0.00 6.13
327 328 7.655521 ATTCTTATTACTAAAAGGGTTGGGC 57.344 36.000 0.00 0.00 0.00 5.36
328 329 9.031537 ACAATTCTTATTACTAAAAGGGTTGGG 57.968 33.333 0.00 0.00 0.00 4.12
340 341 9.319143 GTGTGAGCATCTACAATTCTTATTACT 57.681 33.333 0.00 0.00 34.92 2.24
341 342 9.098355 TGTGTGAGCATCTACAATTCTTATTAC 57.902 33.333 0.00 0.00 34.92 1.89
342 343 9.098355 GTGTGTGAGCATCTACAATTCTTATTA 57.902 33.333 0.00 0.00 35.39 0.98
343 344 7.607607 TGTGTGTGAGCATCTACAATTCTTATT 59.392 33.333 0.00 0.00 35.39 1.40
344 345 7.065085 GTGTGTGTGAGCATCTACAATTCTTAT 59.935 37.037 0.00 0.00 35.39 1.73
345 346 6.368791 GTGTGTGTGAGCATCTACAATTCTTA 59.631 38.462 0.00 0.00 35.39 2.10
346 347 5.180117 GTGTGTGTGAGCATCTACAATTCTT 59.820 40.000 0.00 0.00 35.39 2.52
347 348 4.692625 GTGTGTGTGAGCATCTACAATTCT 59.307 41.667 0.00 0.00 35.39 2.40
348 349 4.452114 TGTGTGTGTGAGCATCTACAATTC 59.548 41.667 0.00 0.00 35.39 2.17
355 356 4.443457 GGGTATATGTGTGTGTGAGCATCT 60.443 45.833 0.00 0.00 34.92 2.90
366 367 7.210718 TCGTATAAGTGAGGGTATATGTGTG 57.789 40.000 0.00 0.00 0.00 3.82
372 373 4.761739 CGGGTTCGTATAAGTGAGGGTATA 59.238 45.833 0.00 0.00 0.00 1.47
377 380 1.407979 AGCGGGTTCGTATAAGTGAGG 59.592 52.381 0.00 0.00 38.89 3.86
385 388 2.202703 GTGCGAGCGGGTTCGTAT 60.203 61.111 6.78 0.00 42.38 3.06
393 396 1.490693 GATATGGTGTGTGCGAGCGG 61.491 60.000 0.00 0.00 0.00 5.52
413 416 1.066303 GTATCTCGGAGGTGCTCACAG 59.934 57.143 4.96 0.00 31.08 3.66
429 432 2.960819 ACTTTGTGACGCTCCAGTATC 58.039 47.619 0.00 0.00 0.00 2.24
430 433 4.737855 ATACTTTGTGACGCTCCAGTAT 57.262 40.909 0.00 0.00 0.00 2.12
437 440 5.120830 GTCAATCTCAATACTTTGTGACGCT 59.879 40.000 0.00 0.00 37.96 5.07
439 442 5.541910 CGTCAATCTCAATACTTTGTGACG 58.458 41.667 8.26 8.26 44.62 4.35
441 444 6.929049 ACTTCGTCAATCTCAATACTTTGTGA 59.071 34.615 0.00 0.00 39.08 3.58
448 451 4.265556 CGGTGACTTCGTCAATCTCAATAC 59.734 45.833 0.00 0.00 44.49 1.89
450 453 3.254060 CGGTGACTTCGTCAATCTCAAT 58.746 45.455 0.00 0.00 44.49 2.57
453 456 0.992802 GCGGTGACTTCGTCAATCTC 59.007 55.000 0.00 0.00 44.49 2.75
500 503 5.527214 TCACAATGTTCGTTCAGTGAAAGAT 59.473 36.000 20.01 5.15 36.97 2.40
501 504 4.873259 TCACAATGTTCGTTCAGTGAAAGA 59.127 37.500 16.26 16.26 36.97 2.52
505 508 3.130633 CCTCACAATGTTCGTTCAGTGA 58.869 45.455 14.19 0.00 36.97 3.41
554 557 2.766263 TCTAGACTTGGCATCGATGGTT 59.234 45.455 26.00 9.16 0.00 3.67
575 578 7.996644 TGAAGTTAGTCCATTAGGTTTCAAGTT 59.003 33.333 0.00 0.00 35.89 2.66
583 586 4.595781 TGTGGTGAAGTTAGTCCATTAGGT 59.404 41.667 0.00 0.00 35.89 3.08
588 591 3.650942 TCCTTGTGGTGAAGTTAGTCCAT 59.349 43.478 0.00 0.00 32.45 3.41
597 600 4.086706 ACTTAGGTTCCTTGTGGTGAAG 57.913 45.455 0.00 0.00 34.23 3.02
633 637 1.414181 AGTGTGGTGAGTGAAGTGAGG 59.586 52.381 0.00 0.00 0.00 3.86
656 660 7.567571 CACGTGCAAAATAGACATTAGATAGG 58.432 38.462 0.82 0.00 0.00 2.57
682 692 3.984018 ACGTCGATATTTTGTGGAACG 57.016 42.857 0.00 0.00 42.39 3.95
698 709 1.530323 ATTGCAAGGTGGGTTACGTC 58.470 50.000 4.94 0.00 0.00 4.34
701 712 5.575218 CGAAATTTATTGCAAGGTGGGTTAC 59.425 40.000 4.94 0.00 0.00 2.50
702 713 5.715070 CGAAATTTATTGCAAGGTGGGTTA 58.285 37.500 4.94 0.00 0.00 2.85
754 765 4.798682 TCTCTTCCTCCCCGGGCC 62.799 72.222 17.73 0.00 0.00 5.80
755 766 3.157949 CTCTCTTCCTCCCCGGGC 61.158 72.222 17.73 0.00 0.00 6.13
756 767 1.456705 CTCTCTCTTCCTCCCCGGG 60.457 68.421 15.80 15.80 0.00 5.73
757 768 0.467290 CTCTCTCTCTTCCTCCCCGG 60.467 65.000 0.00 0.00 0.00 5.73
758 769 0.257616 ACTCTCTCTCTTCCTCCCCG 59.742 60.000 0.00 0.00 0.00 5.73
759 770 1.006639 ACACTCTCTCTCTTCCTCCCC 59.993 57.143 0.00 0.00 0.00 4.81
760 771 2.099405 CACACTCTCTCTCTTCCTCCC 58.901 57.143 0.00 0.00 0.00 4.30
761 772 2.752903 GTCACACTCTCTCTCTTCCTCC 59.247 54.545 0.00 0.00 0.00 4.30
762 773 2.418628 CGTCACACTCTCTCTCTTCCTC 59.581 54.545 0.00 0.00 0.00 3.71
763 774 2.224670 ACGTCACACTCTCTCTCTTCCT 60.225 50.000 0.00 0.00 0.00 3.36
764 775 2.095466 CACGTCACACTCTCTCTCTTCC 60.095 54.545 0.00 0.00 0.00 3.46
765 776 2.095466 CCACGTCACACTCTCTCTCTTC 60.095 54.545 0.00 0.00 0.00 2.87
766 777 1.883275 CCACGTCACACTCTCTCTCTT 59.117 52.381 0.00 0.00 0.00 2.85
767 778 1.529226 CCACGTCACACTCTCTCTCT 58.471 55.000 0.00 0.00 0.00 3.10
768 779 0.109504 GCCACGTCACACTCTCTCTC 60.110 60.000 0.00 0.00 0.00 3.20
769 780 1.857318 CGCCACGTCACACTCTCTCT 61.857 60.000 0.00 0.00 0.00 3.10
770 781 1.442857 CGCCACGTCACACTCTCTC 60.443 63.158 0.00 0.00 0.00 3.20
771 782 2.645567 CGCCACGTCACACTCTCT 59.354 61.111 0.00 0.00 0.00 3.10
772 783 2.430921 CCGCCACGTCACACTCTC 60.431 66.667 0.00 0.00 0.00 3.20
773 784 4.664677 GCCGCCACGTCACACTCT 62.665 66.667 0.00 0.00 0.00 3.24
814 825 3.717707 TGTGTAAATATCCTCAGAGCGC 58.282 45.455 0.00 0.00 0.00 5.92
815 826 4.508124 GGTTGTGTAAATATCCTCAGAGCG 59.492 45.833 0.00 0.00 0.00 5.03
955 970 1.969923 CAGGATGCTTCTAGGAGGAGG 59.030 57.143 0.00 0.00 0.00 4.30
956 971 2.892852 CTCAGGATGCTTCTAGGAGGAG 59.107 54.545 0.00 0.00 34.76 3.69
957 972 2.425538 CCTCAGGATGCTTCTAGGAGGA 60.426 54.545 20.07 0.00 34.76 3.71
1412 1436 2.738139 CACATGCACCAGCGTCGA 60.738 61.111 0.00 0.00 46.23 4.20
1418 1442 3.129502 CCGAGGCACATGCACCAG 61.130 66.667 6.15 1.26 44.36 4.00
1629 1653 0.948141 GCTGCTCTGTGAGTGTGACC 60.948 60.000 0.00 0.00 31.39 4.02
1709 1733 2.125952 CTGACGCTGATGCCGTCA 60.126 61.111 14.69 14.69 44.06 4.35
1744 1768 2.989840 CGAATATCCCAGCTTCGATCAC 59.010 50.000 0.00 0.00 43.24 3.06
1752 1776 1.337260 GCGATGTCGAATATCCCAGCT 60.337 52.381 6.60 0.00 43.02 4.24
1755 1779 0.038618 CGGCGATGTCGAATATCCCA 60.039 55.000 0.00 0.00 43.02 4.37
1906 1930 3.191539 CCGAAGCTCGAGCAAGCC 61.192 66.667 36.87 21.03 43.74 4.35
1930 1954 2.480759 CGGTGGTTACGATTAGACCAGG 60.481 54.545 0.00 0.00 43.62 4.45
1933 1957 1.135721 AGCGGTGGTTACGATTAGACC 59.864 52.381 0.00 0.00 0.00 3.85
1971 1995 5.419155 CACACTGAGAGGATTAGAAGGTGTA 59.581 44.000 0.00 0.00 34.33 2.90
1972 1996 4.221703 CACACTGAGAGGATTAGAAGGTGT 59.778 45.833 0.00 0.00 36.09 4.16
1973 1997 4.753233 CACACTGAGAGGATTAGAAGGTG 58.247 47.826 0.00 0.00 0.00 4.00
2040 2065 3.313526 AGTTCAGCCATAATTTGCTAGCG 59.686 43.478 10.77 0.00 35.69 4.26
2077 2114 8.934825 GTTACAACAAACCCGTAGTAATCAATA 58.065 33.333 0.00 0.00 0.00 1.90
2166 2203 5.751990 AGTCCACACCGTCGAAATTATAATC 59.248 40.000 0.00 0.00 0.00 1.75
2460 2835 5.747342 TCTTAATTAAAGGCTCCGGCTAAA 58.253 37.500 0.00 0.00 37.50 1.85
2520 2900 6.514541 CAGCAGATTGTGATGACTTTTGTCTT 60.515 38.462 0.00 0.00 46.14 3.01
2624 3008 6.380560 TCACTTGATCTGAGAGAAGTGATGAT 59.619 38.462 24.74 0.00 45.83 2.45
2636 3020 4.433186 AGTCGAAGTCACTTGATCTGAG 57.567 45.455 0.00 0.00 0.00 3.35
2637 3021 4.855715 AAGTCGAAGTCACTTGATCTGA 57.144 40.909 0.00 0.00 32.65 3.27
2639 3023 5.471257 GGTAAAGTCGAAGTCACTTGATCT 58.529 41.667 0.00 0.00 34.21 2.75
2640 3024 4.323868 CGGTAAAGTCGAAGTCACTTGATC 59.676 45.833 0.00 0.00 34.21 2.92
2642 3026 3.635331 CGGTAAAGTCGAAGTCACTTGA 58.365 45.455 0.00 0.00 34.21 3.02
2671 3055 1.144276 TTGTGAACTTGGTCGGCGA 59.856 52.632 4.99 4.99 0.00 5.54
2689 3073 0.671781 GCCTTCTCACTCATGTGCGT 60.672 55.000 0.00 0.00 43.49 5.24
2718 3102 2.158971 GGTCAATTGCTTGTGGTTTGGT 60.159 45.455 0.00 0.00 33.87 3.67
2747 3131 1.032794 TGGAGCTACGCTATCACTGG 58.967 55.000 0.00 0.00 39.88 4.00
2751 3135 2.288213 CGGAATTGGAGCTACGCTATCA 60.288 50.000 0.00 0.00 39.88 2.15
2773 3157 1.227205 CTCCTCTGTGGCTCATCGC 60.227 63.158 0.00 0.00 35.26 4.58
2797 3181 3.283467 AAGGTAGTGGGGGAGGGGG 62.283 68.421 0.00 0.00 0.00 5.40
2830 3214 1.226603 CGAGTACCGTAGTGGCAGC 60.227 63.158 0.00 0.00 43.94 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.