Multiple sequence alignment - TraesCS7D01G214800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G214800 chr7D 100.000 6536 0 0 1 6536 174406732 174413267 0.000000e+00 12070.0
1 TraesCS7D01G214800 chr7D 94.864 331 17 0 4728 5058 174411294 174411624 9.720000e-143 518.0
2 TraesCS7D01G214800 chr7D 94.864 331 17 0 4563 4893 174411459 174411789 9.720000e-143 518.0
3 TraesCS7D01G214800 chr7D 93.450 229 15 0 3256 3484 174409873 174410101 2.260000e-89 340.0
4 TraesCS7D01G214800 chr7D 93.450 229 15 0 3142 3370 174409987 174410215 2.260000e-89 340.0
5 TraesCS7D01G214800 chr7D 94.578 166 9 0 4893 5058 174411294 174411459 2.340000e-64 257.0
6 TraesCS7D01G214800 chr7D 94.578 166 9 0 4563 4728 174411624 174411789 2.340000e-64 257.0
7 TraesCS7D01G214800 chr7A 94.314 3975 180 24 2385 6313 176419420 176423394 0.000000e+00 6047.0
8 TraesCS7D01G214800 chr7A 91.795 1950 72 30 450 2385 176417497 176419372 0.000000e+00 2634.0
9 TraesCS7D01G214800 chr7A 93.656 331 21 0 4728 5058 176421598 176421928 4.550000e-136 496.0
10 TraesCS7D01G214800 chr7A 92.145 331 26 0 4563 4893 176421763 176422093 9.920000e-128 468.0
11 TraesCS7D01G214800 chr7A 93.450 229 15 0 3256 3484 176420177 176420405 2.260000e-89 340.0
12 TraesCS7D01G214800 chr7A 91.020 245 17 4 208 448 176289859 176290102 6.320000e-85 326.0
13 TraesCS7D01G214800 chr7A 92.140 229 18 0 3142 3370 176420291 176420519 2.270000e-84 324.0
14 TraesCS7D01G214800 chr7A 94.286 210 11 1 1 209 176289568 176289777 2.940000e-83 320.0
15 TraesCS7D01G214800 chr7A 93.976 166 10 0 4893 5058 176421598 176421763 1.090000e-62 252.0
16 TraesCS7D01G214800 chr7A 91.566 166 14 0 4563 4728 176421928 176422093 5.100000e-56 230.0
17 TraesCS7D01G214800 chr7B 94.899 2529 108 9 2385 4893 138871066 138873593 0.000000e+00 3936.0
18 TraesCS7D01G214800 chr7B 92.866 2341 100 26 1 2313 138867591 138869892 0.000000e+00 3336.0
19 TraesCS7D01G214800 chr7B 90.855 1170 71 13 4728 5881 138873263 138874412 0.000000e+00 1535.0
20 TraesCS7D01G214800 chr7B 93.450 229 15 0 3142 3370 138871956 138872184 2.260000e-89 340.0
21 TraesCS7D01G214800 chr7B 92.140 229 18 0 3256 3484 138871842 138872070 2.270000e-84 324.0
22 TraesCS7D01G214800 chr7B 96.273 161 6 0 4893 5053 138873263 138873423 1.400000e-66 265.0
23 TraesCS7D01G214800 chr7B 92.169 166 13 0 4563 4728 138873428 138873593 1.100000e-57 235.0
24 TraesCS7D01G214800 chr7B 90.196 153 14 1 413 565 295080291 295080442 1.440000e-46 198.0
25 TraesCS7D01G214800 chr7B 83.962 212 27 4 5874 6079 138874548 138874758 5.170000e-46 196.0
26 TraesCS7D01G214800 chr7B 96.203 79 3 0 2307 2385 138870940 138871018 5.320000e-26 130.0
27 TraesCS7D01G214800 chr2D 90.255 667 40 10 5569 6214 365348255 365348917 0.000000e+00 848.0
28 TraesCS7D01G214800 chr2D 100.000 29 0 0 861 889 560849741 560849769 3.000000e-03 54.7
29 TraesCS7D01G214800 chr3D 91.558 154 13 0 412 565 422517987 422517834 5.130000e-51 213.0
30 TraesCS7D01G214800 chr3D 87.586 145 11 2 1818 1955 447621614 447621470 1.890000e-35 161.0
31 TraesCS7D01G214800 chr3D 86.598 97 6 2 1810 1899 447621876 447621780 4.170000e-17 100.0
32 TraesCS7D01G214800 chr3B 90.909 154 14 0 412 565 550641748 550641595 2.390000e-49 207.0
33 TraesCS7D01G214800 chr5D 90.850 153 14 0 413 565 162425301 162425149 8.590000e-49 206.0
34 TraesCS7D01G214800 chr5D 90.385 156 14 1 411 565 385791063 385791218 3.090000e-48 204.0
35 TraesCS7D01G214800 chr6B 90.385 156 14 1 411 565 313699549 313699394 3.090000e-48 204.0
36 TraesCS7D01G214800 chr6B 92.105 38 3 0 2662 2699 75916509 75916546 3.000000e-03 54.7
37 TraesCS7D01G214800 chr4A 90.323 155 15 0 411 565 59753169 59753015 3.090000e-48 204.0
38 TraesCS7D01G214800 chr5A 90.196 153 15 0 413 565 260676886 260676734 4.000000e-47 200.0
39 TraesCS7D01G214800 chr4B 77.297 185 30 7 2623 2799 100585097 100584917 1.500000e-16 99.0
40 TraesCS7D01G214800 chr6A 93.333 45 2 1 239 282 131938046 131938002 1.520000e-06 65.8
41 TraesCS7D01G214800 chr6A 96.875 32 1 0 2671 2702 495672503 495672472 3.000000e-03 54.7
42 TraesCS7D01G214800 chr5B 100.000 31 0 0 2621 2651 622039036 622039006 2.550000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G214800 chr7D 174406732 174413267 6535 False 2042.857143 12070 95.112000 1 6536 7 chr7D.!!$F1 6535
1 TraesCS7D01G214800 chr7A 176417497 176423394 5897 False 1348.875000 6047 92.880250 450 6313 8 chr7A.!!$F2 5863
2 TraesCS7D01G214800 chr7A 176289568 176290102 534 False 323.000000 326 92.653000 1 448 2 chr7A.!!$F1 447
3 TraesCS7D01G214800 chr7B 138867591 138874758 7167 False 1144.111111 3936 92.535222 1 6079 9 chr7B.!!$F2 6078
4 TraesCS7D01G214800 chr2D 365348255 365348917 662 False 848.000000 848 90.255000 5569 6214 1 chr2D.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 991 0.392998 AGCCCAAATACGAGCACCAG 60.393 55.000 0.0 0.0 0.0 4.00 F
1540 1657 0.402121 AGGTTCCAGTTCCAGCTTCC 59.598 55.000 0.0 0.0 0.0 3.46 F
1542 1659 1.628846 GGTTCCAGTTCCAGCTTCCTA 59.371 52.381 0.0 0.0 0.0 2.94 F
2995 4240 1.068281 CCTCTGCGAGCTATGTGATGT 59.932 52.381 0.0 0.0 0.0 3.06 F
4533 5778 0.924090 CTCTCCGCTACAAATCGTGC 59.076 55.000 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2466 3691 2.371841 TGACACATAGGAACTGCCAGTT 59.628 45.455 10.45 10.45 41.95 3.16 R
2995 4240 0.871722 GCAATACGTGTGTGAAGCCA 59.128 50.000 0.00 0.00 0.00 4.75 R
3208 4453 1.271102 GGCGAACTGAACTCAGAGAGT 59.729 52.381 13.61 0.00 46.59 3.24 R
4586 5831 0.030504 TGGATGTTGCAGCACAAACG 59.969 50.000 5.00 0.00 40.82 3.60 R
6437 7879 0.034198 TTTCCTTGGACGATGTGCGA 59.966 50.000 0.00 0.00 44.57 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.858581 GCTAGCTAAAAGTTCACACATTTGG 59.141 40.000 7.70 0.00 0.00 3.28
52 53 5.040635 ACATTTGGAAAACATGTTCACGAC 58.959 37.500 12.39 1.97 0.00 4.34
122 125 6.511416 TCATGAATTTGAAAATGGTTCACGT 58.489 32.000 0.00 0.00 0.00 4.49
154 157 5.508200 AATTCACGGCTAAAGAAAACACA 57.492 34.783 0.00 0.00 0.00 3.72
302 392 7.978975 TGATATTTAAAAAGCGAATTTGAGGGG 59.021 33.333 0.00 0.00 0.00 4.79
303 393 4.529109 TTAAAAAGCGAATTTGAGGGGG 57.471 40.909 0.00 0.00 0.00 5.40
353 444 4.278858 CGAATTTGCAGAAAAGTTCACGA 58.721 39.130 0.00 0.00 0.00 4.35
472 563 2.691252 GGGGAAGGGTCCGACCAT 60.691 66.667 19.43 9.67 46.04 3.55
479 570 1.137594 AGGGTCCGACCATTTTGGGA 61.138 55.000 19.43 0.00 43.37 4.37
500 591 3.297736 ACTATAGTACGCAGCCTTTCCT 58.702 45.455 2.75 0.00 0.00 3.36
582 673 8.905850 AGGCAACAGAAAAATTTCATGAAAAAT 58.094 25.926 23.91 13.52 39.61 1.82
638 730 9.541724 GAAAAATGAGTGAAAAGGAACAAAAAC 57.458 29.630 0.00 0.00 0.00 2.43
639 731 8.846943 AAAATGAGTGAAAAGGAACAAAAACT 57.153 26.923 0.00 0.00 0.00 2.66
640 732 9.936759 AAAATGAGTGAAAAGGAACAAAAACTA 57.063 25.926 0.00 0.00 0.00 2.24
641 733 8.926715 AATGAGTGAAAAGGAACAAAAACTAC 57.073 30.769 0.00 0.00 0.00 2.73
808 901 0.683179 CAAACCGAATCCCCTTCCCC 60.683 60.000 0.00 0.00 0.00 4.81
809 902 0.849540 AAACCGAATCCCCTTCCCCT 60.850 55.000 0.00 0.00 0.00 4.79
810 903 0.849540 AACCGAATCCCCTTCCCCTT 60.850 55.000 0.00 0.00 0.00 3.95
811 904 1.227383 CCGAATCCCCTTCCCCTTG 59.773 63.158 0.00 0.00 0.00 3.61
812 905 1.453928 CGAATCCCCTTCCCCTTGC 60.454 63.158 0.00 0.00 0.00 4.01
813 906 1.075970 GAATCCCCTTCCCCTTGCC 60.076 63.158 0.00 0.00 0.00 4.52
898 991 0.392998 AGCCCAAATACGAGCACCAG 60.393 55.000 0.00 0.00 0.00 4.00
903 996 2.643551 CAAATACGAGCACCAGGGAAT 58.356 47.619 0.00 0.00 0.00 3.01
904 997 3.016736 CAAATACGAGCACCAGGGAATT 58.983 45.455 0.00 0.00 0.00 2.17
1150 1264 4.717629 TGCTTCACGGACTCGCGG 62.718 66.667 6.13 0.00 40.63 6.46
1384 1501 5.757320 CCCATGATTGTCTTGTCTATCAGTC 59.243 44.000 0.00 0.00 34.41 3.51
1416 1533 2.125552 CAGCCATCTTCGTCGCCA 60.126 61.111 0.00 0.00 0.00 5.69
1499 1616 1.348036 GCACACTTCCTAGGTTCCAGT 59.652 52.381 9.08 4.38 0.00 4.00
1503 1620 3.974642 ACACTTCCTAGGTTCCAGTTTCT 59.025 43.478 9.08 0.00 0.00 2.52
1504 1621 5.011738 CACACTTCCTAGGTTCCAGTTTCTA 59.988 44.000 9.08 0.00 0.00 2.10
1505 1622 5.785940 ACACTTCCTAGGTTCCAGTTTCTAT 59.214 40.000 9.08 0.00 0.00 1.98
1506 1623 6.958192 ACACTTCCTAGGTTCCAGTTTCTATA 59.042 38.462 9.08 0.00 0.00 1.31
1508 1625 8.487028 CACTTCCTAGGTTCCAGTTTCTATAAT 58.513 37.037 9.08 0.00 0.00 1.28
1509 1626 9.059023 ACTTCCTAGGTTCCAGTTTCTATAATT 57.941 33.333 9.08 0.00 0.00 1.40
1510 1627 9.331282 CTTCCTAGGTTCCAGTTTCTATAATTG 57.669 37.037 9.08 0.00 0.00 2.32
1513 1630 6.759497 AGGTTCCAGTTTCTATAATTGCAC 57.241 37.500 0.00 0.00 0.00 4.57
1514 1631 6.245408 AGGTTCCAGTTTCTATAATTGCACA 58.755 36.000 0.00 0.00 0.00 4.57
1515 1632 6.151144 AGGTTCCAGTTTCTATAATTGCACAC 59.849 38.462 0.00 0.00 0.00 3.82
1516 1633 6.151144 GGTTCCAGTTTCTATAATTGCACACT 59.849 38.462 0.00 0.00 0.00 3.55
1517 1634 7.309194 GGTTCCAGTTTCTATAATTGCACACTT 60.309 37.037 0.00 0.00 0.00 3.16
1518 1635 7.377766 TCCAGTTTCTATAATTGCACACTTC 57.622 36.000 0.00 0.00 0.00 3.01
1519 1636 6.374333 TCCAGTTTCTATAATTGCACACTTCC 59.626 38.462 0.00 0.00 0.00 3.46
1520 1637 6.375455 CCAGTTTCTATAATTGCACACTTCCT 59.625 38.462 0.00 0.00 0.00 3.36
1521 1638 7.552687 CCAGTTTCTATAATTGCACACTTCCTA 59.447 37.037 0.00 0.00 0.00 2.94
1522 1639 8.607459 CAGTTTCTATAATTGCACACTTCCTAG 58.393 37.037 0.00 0.00 0.00 3.02
1523 1640 7.770897 AGTTTCTATAATTGCACACTTCCTAGG 59.229 37.037 0.82 0.82 0.00 3.02
1524 1641 6.808321 TCTATAATTGCACACTTCCTAGGT 57.192 37.500 9.08 0.00 0.00 3.08
1525 1642 7.195374 TCTATAATTGCACACTTCCTAGGTT 57.805 36.000 9.08 0.00 0.00 3.50
1526 1643 7.272978 TCTATAATTGCACACTTCCTAGGTTC 58.727 38.462 9.08 0.00 0.00 3.62
1527 1644 2.561478 TTGCACACTTCCTAGGTTCC 57.439 50.000 9.08 0.00 0.00 3.62
1528 1645 1.429930 TGCACACTTCCTAGGTTCCA 58.570 50.000 9.08 0.00 0.00 3.53
1529 1646 1.347707 TGCACACTTCCTAGGTTCCAG 59.652 52.381 9.08 3.75 0.00 3.86
1530 1647 1.348036 GCACACTTCCTAGGTTCCAGT 59.652 52.381 9.08 4.38 0.00 4.00
1531 1648 2.224548 GCACACTTCCTAGGTTCCAGTT 60.225 50.000 9.08 0.00 0.00 3.16
1532 1649 3.665190 CACACTTCCTAGGTTCCAGTTC 58.335 50.000 9.08 0.00 0.00 3.01
1533 1650 2.638363 ACACTTCCTAGGTTCCAGTTCC 59.362 50.000 9.08 0.00 0.00 3.62
1534 1651 2.637872 CACTTCCTAGGTTCCAGTTCCA 59.362 50.000 9.08 0.00 0.00 3.53
1535 1652 2.907042 ACTTCCTAGGTTCCAGTTCCAG 59.093 50.000 9.08 0.00 0.00 3.86
1536 1653 1.276622 TCCTAGGTTCCAGTTCCAGC 58.723 55.000 9.08 0.00 0.00 4.85
1537 1654 1.203313 TCCTAGGTTCCAGTTCCAGCT 60.203 52.381 9.08 0.00 0.00 4.24
1538 1655 1.630878 CCTAGGTTCCAGTTCCAGCTT 59.369 52.381 0.00 0.00 0.00 3.74
1539 1656 2.355209 CCTAGGTTCCAGTTCCAGCTTC 60.355 54.545 0.00 0.00 0.00 3.86
1540 1657 0.402121 AGGTTCCAGTTCCAGCTTCC 59.598 55.000 0.00 0.00 0.00 3.46
1541 1658 0.402121 GGTTCCAGTTCCAGCTTCCT 59.598 55.000 0.00 0.00 0.00 3.36
1542 1659 1.628846 GGTTCCAGTTCCAGCTTCCTA 59.371 52.381 0.00 0.00 0.00 2.94
1543 1660 2.355209 GGTTCCAGTTCCAGCTTCCTAG 60.355 54.545 0.00 0.00 0.00 3.02
1594 1712 7.555087 AGATTCAGTCAACTAAGAATCAGGAG 58.445 38.462 18.16 0.00 45.38 3.69
1597 1715 7.303182 TCAGTCAACTAAGAATCAGGAGAAA 57.697 36.000 0.00 0.00 0.00 2.52
1713 1835 5.584551 AGAGGGAACAGTGAAAATAACCT 57.415 39.130 0.00 0.00 0.00 3.50
1714 1836 6.697641 AGAGGGAACAGTGAAAATAACCTA 57.302 37.500 0.00 0.00 0.00 3.08
1970 2092 5.654650 GGGTCCTACCATCTGATCTGTATAG 59.345 48.000 0.00 0.00 41.02 1.31
1985 2107 3.305720 TGTATAGTAGGGGTCTGCCAAG 58.694 50.000 0.00 0.00 36.17 3.61
2256 2378 7.469456 GCTGAAAATTGAAAAGTAGGTGGTGTA 60.469 37.037 0.00 0.00 0.00 2.90
2421 3646 2.351738 GCAACACCCATACACTTTGCTC 60.352 50.000 0.00 0.00 37.08 4.26
2437 3662 7.971722 ACACTTTGCTCGTTGTTATTTTTAGTT 59.028 29.630 0.00 0.00 0.00 2.24
2466 3691 4.599720 TTCTCTCTCCTCTCTCATTGGA 57.400 45.455 0.00 0.00 0.00 3.53
2501 3726 6.836007 TCCTATGTGTCAAGATGTAGAGTCAT 59.164 38.462 0.00 0.00 0.00 3.06
2619 3844 4.109766 GTTTACAAGGCCCGCATTTATTC 58.890 43.478 0.00 0.00 0.00 1.75
2736 3962 7.918033 TGGCATATAATTAACATTTGTTGGTCG 59.082 33.333 6.21 0.00 38.90 4.79
2995 4240 1.068281 CCTCTGCGAGCTATGTGATGT 59.932 52.381 0.00 0.00 0.00 3.06
3011 4256 3.999821 TGTGGCTTCACACACGTAT 57.000 47.368 0.00 0.00 45.70 3.06
3104 4349 1.673400 CACTCGAGGTGTCAGATCGAT 59.327 52.381 18.41 0.00 43.78 3.59
3125 4370 3.657610 TGATGGTGGGTCTAGTGATCAT 58.342 45.455 0.00 0.00 0.00 2.45
3143 4388 7.177921 AGTGATCATGGTGAAATTGAAATCACT 59.822 33.333 0.00 10.71 44.20 3.41
3208 4453 6.688922 GCTTCTGATATTGTGGATGAGGGTTA 60.689 42.308 0.00 0.00 0.00 2.85
3224 4469 4.484912 AGGGTTACTCTCTGAGTTCAGTT 58.515 43.478 8.85 0.00 40.28 3.16
3572 4817 1.136891 GCACAAAGCAGTGGGTCTTTT 59.863 47.619 6.18 0.00 44.79 2.27
3883 5128 1.508088 GTTCTGCGGGATTTGCCAG 59.492 57.895 0.00 0.00 38.95 4.85
3922 5167 4.246458 AGCGCTAGTTCTTCTGTTAAAGG 58.754 43.478 8.99 0.00 0.00 3.11
4307 5552 5.514274 TGACAAATCAGGAAAGTCCAAAC 57.486 39.130 0.00 0.00 39.61 2.93
4321 5566 2.359848 GTCCAAACGGTAAAGTTGCCTT 59.640 45.455 0.00 0.00 34.14 4.35
4361 5606 3.942829 TGTTGATCAGACACCAGAATCC 58.057 45.455 0.00 0.00 0.00 3.01
4492 5737 4.337555 GCATCCATCTGCAAACAGTCTATT 59.662 41.667 0.00 0.00 44.77 1.73
4496 5741 4.940046 CCATCTGCAAACAGTCTATTGTCT 59.060 41.667 0.00 0.00 44.77 3.41
4533 5778 0.924090 CTCTCCGCTACAAATCGTGC 59.076 55.000 0.00 0.00 0.00 5.34
4586 5831 1.301293 CCCTCAGGAACCTTCAGCC 59.699 63.158 0.00 0.00 33.47 4.85
4588 5833 1.674057 CTCAGGAACCTTCAGCCGT 59.326 57.895 0.00 0.00 0.00 5.68
4590 5835 0.472471 TCAGGAACCTTCAGCCGTTT 59.528 50.000 0.00 0.00 0.00 3.60
4605 5850 0.030504 CGTTTGTGCTGCAACATCCA 59.969 50.000 2.77 0.00 36.72 3.41
4632 5877 2.260434 GCACCATGGCAGCAACAG 59.740 61.111 21.32 0.37 0.00 3.16
4649 5894 7.029563 CAGCAACAGTTGAAGTTAGAAAAAGT 58.970 34.615 17.99 0.00 0.00 2.66
4686 5931 2.814336 GGCGAGTCCAAGAGAAAACATT 59.186 45.455 0.00 0.00 34.01 2.71
4696 5941 5.979517 CCAAGAGAAAACATTGTTCTGGAAC 59.020 40.000 1.83 6.53 41.50 3.62
4697 5942 6.183360 CCAAGAGAAAACATTGTTCTGGAACT 60.183 38.462 13.54 0.00 41.67 3.01
4791 6036 1.240256 TGAAATTGGTACCGTGGCAC 58.760 50.000 7.79 7.79 0.00 5.01
4854 6099 4.150804 GTGAGTCCAAGAGAAAACATCGTC 59.849 45.833 0.00 0.00 0.00 4.20
4884 6129 3.242870 GCGTGATGATCAAGGATCCAAAC 60.243 47.826 15.82 1.13 38.20 2.93
4889 6134 3.430453 TGATCAAGGATCCAAACAACCC 58.570 45.455 15.82 0.00 38.20 4.11
4920 6165 0.034896 TCAGGAACCTTCAGCCGTTC 59.965 55.000 0.00 0.00 38.10 3.95
4925 6170 2.357517 CCTTCAGCCGTTCGTGCT 60.358 61.111 3.26 3.26 40.41 4.40
4985 6230 7.610305 ACAGTTGAAGTTAGAAAAAGTTCTGGA 59.390 33.333 6.81 0.00 44.12 3.86
4987 6232 7.829706 AGTTGAAGTTAGAAAAAGTTCTGGACT 59.170 33.333 6.81 1.50 44.12 3.85
4996 6241 1.546961 AGTTCTGGACTAGACCGTGG 58.453 55.000 6.76 0.34 36.65 4.94
4999 6244 0.402887 TCTGGACTAGACCGTGGTGA 59.597 55.000 6.76 0.00 0.00 4.02
5000 6245 0.811915 CTGGACTAGACCGTGGTGAG 59.188 60.000 6.76 0.00 0.00 3.51
5048 6293 2.945008 GCGTGATGATCAAGGATCCAAA 59.055 45.455 15.82 0.00 38.20 3.28
5173 6419 0.667993 TTTCAGCCCTTTCAGCAACG 59.332 50.000 0.00 0.00 0.00 4.10
5194 6440 7.597369 GCAACGGAACCTTCTTTTATTTACATT 59.403 33.333 0.00 0.00 0.00 2.71
5216 6463 8.462016 ACATTTATCTGATCTGTAAAAACTGCC 58.538 33.333 0.00 0.00 0.00 4.85
5246 6493 4.505566 CCAGGTTCTGACAGATTCAAGGAA 60.506 45.833 5.87 0.00 32.21 3.36
5248 6495 3.438434 GGTTCTGACAGATTCAAGGAAGC 59.562 47.826 5.87 0.00 32.76 3.86
5249 6496 3.340814 TCTGACAGATTCAAGGAAGCC 57.659 47.619 0.00 0.00 32.21 4.35
5300 6547 0.311165 CCTACGGACTGGAGCATACG 59.689 60.000 0.00 0.00 0.00 3.06
5367 6614 1.740025 GCAGAACCGGATCTTCCAAAG 59.260 52.381 12.21 0.68 35.91 2.77
5487 6734 2.738964 GCCTCTTGCTAGGGTTTAGACG 60.739 54.545 0.00 0.00 37.11 4.18
5501 6748 1.355971 TAGACGGCGTCTCAAATTGC 58.644 50.000 42.01 13.66 42.40 3.56
5764 7026 0.326264 GGAACTGGTCTCACATGCCT 59.674 55.000 0.00 0.00 0.00 4.75
5778 7040 1.541147 CATGCCTGGATTTGTGAACGT 59.459 47.619 0.00 0.00 0.00 3.99
5792 7054 1.883275 TGAACGTTGGCTGTTAATGGG 59.117 47.619 5.00 0.00 0.00 4.00
5814 7076 0.875059 GCTGGACAAAAAGTCTCCCG 59.125 55.000 0.00 0.00 46.72 5.14
5890 7295 1.722011 TTTAAGCGCCACTAGCTGTC 58.278 50.000 2.29 0.00 45.31 3.51
5900 7305 2.153645 CACTAGCTGTCATTGGTTGCA 58.846 47.619 0.00 0.00 0.00 4.08
5901 7306 2.161012 CACTAGCTGTCATTGGTTGCAG 59.839 50.000 0.00 0.00 34.54 4.41
5902 7307 2.038952 ACTAGCTGTCATTGGTTGCAGA 59.961 45.455 0.00 0.00 33.78 4.26
5903 7308 1.242076 AGCTGTCATTGGTTGCAGAC 58.758 50.000 0.00 0.00 33.78 3.51
5928 7339 3.713650 TCCGCTGAGGAGAAAGGG 58.286 61.111 0.00 0.00 45.98 3.95
5931 7342 0.674895 CCGCTGAGGAGAAAGGGTTG 60.675 60.000 0.00 0.00 45.00 3.77
5952 7371 6.919721 GTTGCTGAAACCTTCCAATATTGTA 58.080 36.000 14.25 0.00 32.13 2.41
5967 7386 7.827236 TCCAATATTGTAAGTGTAAGGTCCAAG 59.173 37.037 14.25 0.00 0.00 3.61
5968 7387 7.415206 CCAATATTGTAAGTGTAAGGTCCAAGC 60.415 40.741 14.25 0.00 0.00 4.01
5973 7399 2.863809 AGTGTAAGGTCCAAGCCTTTG 58.136 47.619 2.52 0.00 45.91 2.77
6184 7611 5.921004 TTAATGGATTTGTGCAAGCAAAC 57.079 34.783 4.76 0.84 40.58 2.93
6228 7659 9.366216 AGTACAAAAGAAAATTTCCAGTGTTTC 57.634 29.630 1.57 0.00 0.00 2.78
6229 7660 9.366216 GTACAAAAGAAAATTTCCAGTGTTTCT 57.634 29.630 1.57 0.99 41.02 2.52
6230 7661 8.479313 ACAAAAGAAAATTTCCAGTGTTTCTC 57.521 30.769 1.57 0.00 38.94 2.87
6231 7662 8.314021 ACAAAAGAAAATTTCCAGTGTTTCTCT 58.686 29.630 1.57 0.00 38.94 3.10
6232 7663 9.801873 CAAAAGAAAATTTCCAGTGTTTCTCTA 57.198 29.630 1.57 0.00 38.94 2.43
6233 7664 9.803315 AAAAGAAAATTTCCAGTGTTTCTCTAC 57.197 29.630 1.57 0.00 38.94 2.59
6238 7674 3.746045 TCCAGTGTTTCTCTACCACAC 57.254 47.619 0.00 0.00 41.03 3.82
6241 7677 4.080807 TCCAGTGTTTCTCTACCACACAAA 60.081 41.667 4.60 0.00 42.81 2.83
6248 7684 6.183361 TGTTTCTCTACCACACAAAGTCCATA 60.183 38.462 0.00 0.00 0.00 2.74
6255 7691 4.719773 ACCACACAAAGTCCATATAGGCTA 59.280 41.667 0.00 0.00 37.29 3.93
6261 7697 4.487282 AAGTCCATATAGGCTAGACCCA 57.513 45.455 0.00 0.00 40.58 4.51
6262 7698 4.054359 AGTCCATATAGGCTAGACCCAG 57.946 50.000 0.00 0.00 40.58 4.45
6263 7699 3.403051 AGTCCATATAGGCTAGACCCAGT 59.597 47.826 0.00 0.00 40.58 4.00
6264 7700 3.511934 GTCCATATAGGCTAGACCCAGTG 59.488 52.174 0.00 0.00 40.58 3.66
6266 7702 1.617322 TATAGGCTAGACCCAGTGCG 58.383 55.000 0.00 0.00 40.58 5.34
6282 7724 4.382728 CGGAACCATGCGCATTTC 57.617 55.556 22.81 21.92 32.30 2.17
6286 7728 1.928503 GGAACCATGCGCATTTCAATG 59.071 47.619 27.35 16.08 39.40 2.82
6296 7738 2.163010 CGCATTTCAATGTCTGCCTCTT 59.837 45.455 1.59 0.00 38.65 2.85
6309 7751 2.629617 CTGCCTCTTGGTTCCACAATTT 59.370 45.455 0.00 0.00 35.27 1.82
6313 7755 5.007682 GCCTCTTGGTTCCACAATTTAGTA 58.992 41.667 0.00 0.00 35.27 1.82
6314 7756 5.123979 GCCTCTTGGTTCCACAATTTAGTAG 59.876 44.000 0.00 0.00 35.27 2.57
6315 7757 5.123979 CCTCTTGGTTCCACAATTTAGTAGC 59.876 44.000 0.00 0.00 0.00 3.58
6316 7758 4.693566 TCTTGGTTCCACAATTTAGTAGCG 59.306 41.667 0.00 0.00 0.00 4.26
6317 7759 2.745281 TGGTTCCACAATTTAGTAGCGC 59.255 45.455 0.00 0.00 0.00 5.92
6318 7760 2.222953 GGTTCCACAATTTAGTAGCGCG 60.223 50.000 0.00 0.00 0.00 6.86
6319 7761 1.003851 TCCACAATTTAGTAGCGCGC 58.996 50.000 26.66 26.66 0.00 6.86
6320 7762 0.724549 CCACAATTTAGTAGCGCGCA 59.275 50.000 35.10 16.82 0.00 6.09
6321 7763 1.330521 CCACAATTTAGTAGCGCGCAT 59.669 47.619 35.10 20.86 0.00 4.73
6322 7764 2.599848 CCACAATTTAGTAGCGCGCATC 60.600 50.000 35.10 24.34 0.00 3.91
6323 7765 2.285220 CACAATTTAGTAGCGCGCATCT 59.715 45.455 35.10 29.49 0.00 2.90
6324 7766 2.936498 ACAATTTAGTAGCGCGCATCTT 59.064 40.909 35.10 15.58 0.00 2.40
6325 7767 3.374058 ACAATTTAGTAGCGCGCATCTTT 59.626 39.130 35.10 15.14 0.00 2.52
6326 7768 3.592381 ATTTAGTAGCGCGCATCTTTG 57.408 42.857 35.10 0.00 0.00 2.77
6327 7769 2.287393 TTAGTAGCGCGCATCTTTGA 57.713 45.000 35.10 15.73 0.00 2.69
6328 7770 2.287393 TAGTAGCGCGCATCTTTGAA 57.713 45.000 35.10 12.29 0.00 2.69
6329 7771 1.438651 AGTAGCGCGCATCTTTGAAA 58.561 45.000 35.10 3.41 0.00 2.69
6330 7772 1.804151 AGTAGCGCGCATCTTTGAAAA 59.196 42.857 35.10 1.72 0.00 2.29
6331 7773 2.225491 AGTAGCGCGCATCTTTGAAAAA 59.775 40.909 35.10 0.01 0.00 1.94
6332 7774 1.408422 AGCGCGCATCTTTGAAAAAC 58.592 45.000 35.10 0.00 0.00 2.43
6333 7775 1.127701 GCGCGCATCTTTGAAAAACA 58.872 45.000 29.10 0.00 0.00 2.83
6334 7776 1.720852 GCGCGCATCTTTGAAAAACAT 59.279 42.857 29.10 0.00 0.00 2.71
6335 7777 2.471103 GCGCGCATCTTTGAAAAACATG 60.471 45.455 29.10 0.00 0.00 3.21
6336 7778 2.471103 CGCGCATCTTTGAAAAACATGC 60.471 45.455 8.75 3.68 0.00 4.06
6337 7779 2.159801 GCGCATCTTTGAAAAACATGCC 60.160 45.455 0.30 0.00 29.99 4.40
6338 7780 3.058450 CGCATCTTTGAAAAACATGCCA 58.942 40.909 7.18 0.00 29.99 4.92
6339 7781 3.680937 CGCATCTTTGAAAAACATGCCAT 59.319 39.130 7.18 0.00 29.99 4.40
6340 7782 4.201647 CGCATCTTTGAAAAACATGCCATC 60.202 41.667 7.18 0.00 29.99 3.51
6341 7783 4.933400 GCATCTTTGAAAAACATGCCATCT 59.067 37.500 0.00 0.00 0.00 2.90
6342 7784 5.063060 GCATCTTTGAAAAACATGCCATCTC 59.937 40.000 0.00 0.00 0.00 2.75
6343 7785 5.138125 TCTTTGAAAAACATGCCATCTCC 57.862 39.130 0.00 0.00 0.00 3.71
6344 7786 4.588106 TCTTTGAAAAACATGCCATCTCCA 59.412 37.500 0.00 0.00 0.00 3.86
6345 7787 3.940209 TGAAAAACATGCCATCTCCAC 57.060 42.857 0.00 0.00 0.00 4.02
6346 7788 3.499338 TGAAAAACATGCCATCTCCACT 58.501 40.909 0.00 0.00 0.00 4.00
6347 7789 3.256383 TGAAAAACATGCCATCTCCACTG 59.744 43.478 0.00 0.00 0.00 3.66
6348 7790 2.592102 AAACATGCCATCTCCACTGT 57.408 45.000 0.00 0.00 0.00 3.55
6349 7791 2.119801 AACATGCCATCTCCACTGTC 57.880 50.000 0.00 0.00 0.00 3.51
6350 7792 0.254178 ACATGCCATCTCCACTGTCC 59.746 55.000 0.00 0.00 0.00 4.02
6351 7793 0.253894 CATGCCATCTCCACTGTCCA 59.746 55.000 0.00 0.00 0.00 4.02
6352 7794 0.994247 ATGCCATCTCCACTGTCCAA 59.006 50.000 0.00 0.00 0.00 3.53
6353 7795 0.325933 TGCCATCTCCACTGTCCAAG 59.674 55.000 0.00 0.00 0.00 3.61
6354 7796 0.393537 GCCATCTCCACTGTCCAAGG 60.394 60.000 0.00 0.00 0.00 3.61
6355 7797 0.254178 CCATCTCCACTGTCCAAGGG 59.746 60.000 0.00 0.00 0.00 3.95
6360 7802 3.081554 CACTGTCCAAGGGGAGGG 58.918 66.667 0.00 0.00 46.12 4.30
6361 7803 2.936032 ACTGTCCAAGGGGAGGGC 60.936 66.667 0.00 0.00 46.12 5.19
6362 7804 2.935481 CTGTCCAAGGGGAGGGCA 60.935 66.667 0.00 0.00 46.12 5.36
6363 7805 3.256960 TGTCCAAGGGGAGGGCAC 61.257 66.667 0.00 0.00 46.12 5.01
6364 7806 3.256960 GTCCAAGGGGAGGGCACA 61.257 66.667 0.00 0.00 46.12 4.57
6365 7807 2.451493 TCCAAGGGGAGGGCACAA 60.451 61.111 0.00 0.00 38.64 3.33
6366 7808 2.088096 TCCAAGGGGAGGGCACAAA 61.088 57.895 0.00 0.00 38.64 2.83
6367 7809 1.607467 CCAAGGGGAGGGCACAAAG 60.607 63.158 0.00 0.00 35.59 2.77
6368 7810 1.460255 CAAGGGGAGGGCACAAAGA 59.540 57.895 0.00 0.00 0.00 2.52
6369 7811 0.895559 CAAGGGGAGGGCACAAAGAC 60.896 60.000 0.00 0.00 0.00 3.01
6370 7812 2.359975 GGGGAGGGCACAAAGACG 60.360 66.667 0.00 0.00 0.00 4.18
6371 7813 2.747686 GGGAGGGCACAAAGACGA 59.252 61.111 0.00 0.00 0.00 4.20
6372 7814 1.072505 GGGAGGGCACAAAGACGAA 59.927 57.895 0.00 0.00 0.00 3.85
6373 7815 1.235281 GGGAGGGCACAAAGACGAAC 61.235 60.000 0.00 0.00 0.00 3.95
6374 7816 0.534203 GGAGGGCACAAAGACGAACA 60.534 55.000 0.00 0.00 0.00 3.18
6375 7817 1.305201 GAGGGCACAAAGACGAACAA 58.695 50.000 0.00 0.00 0.00 2.83
6376 7818 1.673920 GAGGGCACAAAGACGAACAAA 59.326 47.619 0.00 0.00 0.00 2.83
6377 7819 1.676006 AGGGCACAAAGACGAACAAAG 59.324 47.619 0.00 0.00 0.00 2.77
6378 7820 1.269051 GGGCACAAAGACGAACAAAGG 60.269 52.381 0.00 0.00 0.00 3.11
6379 7821 1.673920 GGCACAAAGACGAACAAAGGA 59.326 47.619 0.00 0.00 0.00 3.36
6380 7822 2.098443 GGCACAAAGACGAACAAAGGAA 59.902 45.455 0.00 0.00 0.00 3.36
6381 7823 3.243401 GGCACAAAGACGAACAAAGGAAT 60.243 43.478 0.00 0.00 0.00 3.01
6382 7824 4.359706 GCACAAAGACGAACAAAGGAATT 58.640 39.130 0.00 0.00 0.00 2.17
6383 7825 4.803613 GCACAAAGACGAACAAAGGAATTT 59.196 37.500 0.00 0.00 0.00 1.82
6384 7826 5.051708 GCACAAAGACGAACAAAGGAATTTC 60.052 40.000 0.00 0.00 0.00 2.17
6385 7827 6.265577 CACAAAGACGAACAAAGGAATTTCT 58.734 36.000 0.00 0.00 0.00 2.52
6386 7828 6.751888 CACAAAGACGAACAAAGGAATTTCTT 59.248 34.615 0.00 0.00 0.00 2.52
6387 7829 6.751888 ACAAAGACGAACAAAGGAATTTCTTG 59.248 34.615 0.00 0.00 0.00 3.02
6388 7830 6.451064 AAGACGAACAAAGGAATTTCTTGT 57.549 33.333 0.00 0.00 0.00 3.16
6389 7831 5.821204 AGACGAACAAAGGAATTTCTTGTG 58.179 37.500 0.00 3.77 0.00 3.33
6390 7832 4.359706 ACGAACAAAGGAATTTCTTGTGC 58.640 39.130 0.00 0.00 0.00 4.57
6391 7833 4.142271 ACGAACAAAGGAATTTCTTGTGCA 60.142 37.500 0.00 0.00 0.00 4.57
6392 7834 4.442073 CGAACAAAGGAATTTCTTGTGCAG 59.558 41.667 0.00 0.00 0.00 4.41
6393 7835 3.721035 ACAAAGGAATTTCTTGTGCAGC 58.279 40.909 0.00 0.00 0.00 5.25
6394 7836 2.712057 AAGGAATTTCTTGTGCAGCG 57.288 45.000 0.00 0.00 0.00 5.18
6395 7837 0.883833 AGGAATTTCTTGTGCAGCGG 59.116 50.000 0.00 0.00 0.00 5.52
6396 7838 0.733909 GGAATTTCTTGTGCAGCGGC 60.734 55.000 0.31 0.31 41.68 6.53
6406 7848 2.356075 GCAGCGGCATTGCAAACA 60.356 55.556 11.39 0.00 41.17 2.83
6407 7849 1.738830 GCAGCGGCATTGCAAACAT 60.739 52.632 11.39 0.00 41.17 2.71
6408 7850 1.293267 GCAGCGGCATTGCAAACATT 61.293 50.000 11.39 0.00 41.17 2.71
6409 7851 0.440758 CAGCGGCATTGCAAACATTG 59.559 50.000 11.39 0.00 37.31 2.82
6422 7864 4.970472 CAAACATTGCACACACCAATAC 57.030 40.909 0.00 0.00 32.03 1.89
6423 7865 3.658757 AACATTGCACACACCAATACC 57.341 42.857 0.00 0.00 32.03 2.73
6424 7866 2.591923 ACATTGCACACACCAATACCA 58.408 42.857 0.00 0.00 32.03 3.25
6425 7867 2.295909 ACATTGCACACACCAATACCAC 59.704 45.455 0.00 0.00 32.03 4.16
6426 7868 1.323412 TTGCACACACCAATACCACC 58.677 50.000 0.00 0.00 0.00 4.61
6427 7869 0.183731 TGCACACACCAATACCACCA 59.816 50.000 0.00 0.00 0.00 4.17
6428 7870 0.596082 GCACACACCAATACCACCAC 59.404 55.000 0.00 0.00 0.00 4.16
6429 7871 1.974265 CACACACCAATACCACCACA 58.026 50.000 0.00 0.00 0.00 4.17
6430 7872 1.606668 CACACACCAATACCACCACAC 59.393 52.381 0.00 0.00 0.00 3.82
6431 7873 0.871722 CACACCAATACCACCACACG 59.128 55.000 0.00 0.00 0.00 4.49
6432 7874 0.887387 ACACCAATACCACCACACGC 60.887 55.000 0.00 0.00 0.00 5.34
6433 7875 0.886938 CACCAATACCACCACACGCA 60.887 55.000 0.00 0.00 0.00 5.24
6434 7876 0.037590 ACCAATACCACCACACGCAT 59.962 50.000 0.00 0.00 0.00 4.73
6435 7877 0.451383 CCAATACCACCACACGCATG 59.549 55.000 0.00 0.00 0.00 4.06
6436 7878 0.179166 CAATACCACCACACGCATGC 60.179 55.000 7.91 7.91 0.00 4.06
6437 7879 0.322456 AATACCACCACACGCATGCT 60.322 50.000 17.13 0.00 0.00 3.79
6438 7880 0.744414 ATACCACCACACGCATGCTC 60.744 55.000 17.13 0.00 0.00 4.26
6439 7881 3.792047 CCACCACACGCATGCTCG 61.792 66.667 17.13 8.93 0.00 5.03
6440 7882 4.450122 CACCACACGCATGCTCGC 62.450 66.667 17.13 0.00 0.00 5.03
6441 7883 4.986645 ACCACACGCATGCTCGCA 62.987 61.111 17.13 0.00 0.00 5.10
6442 7884 4.450122 CCACACGCATGCTCGCAC 62.450 66.667 17.13 0.00 0.00 5.34
6443 7885 3.714963 CACACGCATGCTCGCACA 61.715 61.111 17.13 0.00 0.00 4.57
6444 7886 2.743538 ACACGCATGCTCGCACAT 60.744 55.556 17.13 0.00 0.00 3.21
6445 7887 2.022346 CACGCATGCTCGCACATC 59.978 61.111 17.13 0.00 0.00 3.06
6446 7888 3.557479 ACGCATGCTCGCACATCG 61.557 61.111 17.13 0.00 40.15 3.84
6447 7889 3.557479 CGCATGCTCGCACATCGT 61.557 61.111 17.13 0.00 39.67 3.73
6448 7890 2.322422 GCATGCTCGCACATCGTC 59.678 61.111 11.37 0.00 39.67 4.20
6449 7891 3.009140 CATGCTCGCACATCGTCC 58.991 61.111 0.00 0.00 39.67 4.79
6450 7892 1.810853 CATGCTCGCACATCGTCCA 60.811 57.895 0.00 0.00 39.67 4.02
6451 7893 1.079197 ATGCTCGCACATCGTCCAA 60.079 52.632 0.00 0.00 39.67 3.53
6452 7894 1.086067 ATGCTCGCACATCGTCCAAG 61.086 55.000 0.00 0.00 39.67 3.61
6453 7895 2.456119 GCTCGCACATCGTCCAAGG 61.456 63.158 0.00 0.00 39.67 3.61
6454 7896 1.215382 CTCGCACATCGTCCAAGGA 59.785 57.895 0.00 0.00 39.67 3.36
6455 7897 0.389817 CTCGCACATCGTCCAAGGAA 60.390 55.000 0.00 0.00 39.67 3.36
6456 7898 0.034198 TCGCACATCGTCCAAGGAAA 59.966 50.000 0.00 0.00 39.67 3.13
6457 7899 0.871722 CGCACATCGTCCAAGGAAAA 59.128 50.000 0.00 0.00 0.00 2.29
6458 7900 1.468520 CGCACATCGTCCAAGGAAAAT 59.531 47.619 0.00 0.00 0.00 1.82
6459 7901 2.095263 CGCACATCGTCCAAGGAAAATT 60.095 45.455 0.00 0.00 0.00 1.82
6460 7902 3.611530 CGCACATCGTCCAAGGAAAATTT 60.612 43.478 0.00 0.00 0.00 1.82
6461 7903 3.920412 GCACATCGTCCAAGGAAAATTTC 59.080 43.478 0.00 0.00 0.00 2.17
6462 7904 4.158384 CACATCGTCCAAGGAAAATTTCG 58.842 43.478 0.00 0.00 0.00 3.46
6463 7905 4.069304 ACATCGTCCAAGGAAAATTTCGA 58.931 39.130 0.00 0.00 0.00 3.71
6464 7906 4.154195 ACATCGTCCAAGGAAAATTTCGAG 59.846 41.667 0.00 0.00 0.00 4.04
6465 7907 3.735591 TCGTCCAAGGAAAATTTCGAGT 58.264 40.909 0.00 0.00 0.00 4.18
6466 7908 4.131596 TCGTCCAAGGAAAATTTCGAGTT 58.868 39.130 0.00 0.00 0.00 3.01
6467 7909 5.299148 TCGTCCAAGGAAAATTTCGAGTTA 58.701 37.500 0.00 0.00 0.00 2.24
6468 7910 5.178067 TCGTCCAAGGAAAATTTCGAGTTAC 59.822 40.000 0.00 0.00 0.00 2.50
6469 7911 5.049954 CGTCCAAGGAAAATTTCGAGTTACA 60.050 40.000 0.00 0.00 0.00 2.41
6470 7912 6.512091 CGTCCAAGGAAAATTTCGAGTTACAA 60.512 38.462 0.00 0.00 0.00 2.41
6471 7913 7.197703 GTCCAAGGAAAATTTCGAGTTACAAA 58.802 34.615 0.00 0.00 0.00 2.83
6472 7914 7.865889 GTCCAAGGAAAATTTCGAGTTACAAAT 59.134 33.333 0.00 0.00 0.00 2.32
6473 7915 8.417884 TCCAAGGAAAATTTCGAGTTACAAATT 58.582 29.630 0.00 0.00 34.36 1.82
6474 7916 9.040939 CCAAGGAAAATTTCGAGTTACAAATTT 57.959 29.630 0.00 0.00 41.73 1.82
6475 7917 9.848172 CAAGGAAAATTTCGAGTTACAAATTTG 57.152 29.630 16.67 16.67 39.96 2.32
6476 7918 9.810545 AAGGAAAATTTCGAGTTACAAATTTGA 57.189 25.926 24.64 5.76 39.96 2.69
6477 7919 9.981114 AGGAAAATTTCGAGTTACAAATTTGAT 57.019 25.926 24.64 11.17 39.96 2.57
6501 7943 9.774742 GATTGTAATTTTGTGTTAAGCTAGAGG 57.225 33.333 0.00 0.00 0.00 3.69
6502 7944 7.141100 TGTAATTTTGTGTTAAGCTAGAGGC 57.859 36.000 0.00 0.00 42.19 4.70
6503 7945 6.712998 TGTAATTTTGTGTTAAGCTAGAGGCA 59.287 34.615 0.00 0.00 44.79 4.75
6504 7946 6.840780 AATTTTGTGTTAAGCTAGAGGCAT 57.159 33.333 0.00 0.00 44.79 4.40
6505 7947 6.840780 ATTTTGTGTTAAGCTAGAGGCATT 57.159 33.333 0.00 0.00 44.79 3.56
6506 7948 6.648879 TTTTGTGTTAAGCTAGAGGCATTT 57.351 33.333 0.00 0.00 44.79 2.32
6507 7949 7.753309 TTTTGTGTTAAGCTAGAGGCATTTA 57.247 32.000 0.00 0.00 44.79 1.40
6508 7950 6.737254 TTGTGTTAAGCTAGAGGCATTTAC 57.263 37.500 0.00 0.00 44.79 2.01
6509 7951 5.183228 TGTGTTAAGCTAGAGGCATTTACC 58.817 41.667 0.00 0.00 44.79 2.85
6510 7952 4.575236 GTGTTAAGCTAGAGGCATTTACCC 59.425 45.833 0.00 0.00 44.79 3.69
6511 7953 2.622064 AAGCTAGAGGCATTTACCCG 57.378 50.000 0.00 0.00 44.79 5.28
6512 7954 0.106894 AGCTAGAGGCATTTACCCGC 59.893 55.000 0.00 0.00 44.79 6.13
6513 7955 1.222115 GCTAGAGGCATTTACCCGCG 61.222 60.000 0.00 0.00 41.35 6.46
6514 7956 0.600255 CTAGAGGCATTTACCCGCGG 60.600 60.000 21.04 21.04 0.00 6.46
6515 7957 1.332144 TAGAGGCATTTACCCGCGGT 61.332 55.000 26.12 14.84 40.16 5.68
6516 7958 2.124860 AGGCATTTACCCGCGGTC 60.125 61.111 26.12 0.00 37.09 4.79
6517 7959 2.124860 GGCATTTACCCGCGGTCT 60.125 61.111 26.12 11.37 37.09 3.85
6518 7960 1.747745 GGCATTTACCCGCGGTCTT 60.748 57.895 26.12 10.56 37.09 3.01
6519 7961 1.310216 GGCATTTACCCGCGGTCTTT 61.310 55.000 26.12 7.75 37.09 2.52
6520 7962 0.179174 GCATTTACCCGCGGTCTTTG 60.179 55.000 26.12 15.35 37.09 2.77
6521 7963 1.161843 CATTTACCCGCGGTCTTTGT 58.838 50.000 26.12 16.77 37.09 2.83
6522 7964 2.348660 CATTTACCCGCGGTCTTTGTA 58.651 47.619 26.12 15.64 37.09 2.41
6523 7965 2.766345 TTTACCCGCGGTCTTTGTAT 57.234 45.000 26.12 1.05 37.09 2.29
6524 7966 3.883830 TTTACCCGCGGTCTTTGTATA 57.116 42.857 26.12 10.70 37.09 1.47
6525 7967 3.883830 TTACCCGCGGTCTTTGTATAA 57.116 42.857 26.12 3.49 37.09 0.98
6526 7968 2.014335 ACCCGCGGTCTTTGTATAAC 57.986 50.000 26.12 0.00 0.00 1.89
6527 7969 1.292992 CCCGCGGTCTTTGTATAACC 58.707 55.000 26.12 0.00 0.00 2.85
6528 7970 1.405797 CCCGCGGTCTTTGTATAACCA 60.406 52.381 26.12 0.00 32.35 3.67
6529 7971 2.557317 CCGCGGTCTTTGTATAACCAT 58.443 47.619 19.50 0.00 32.35 3.55
6530 7972 2.542595 CCGCGGTCTTTGTATAACCATC 59.457 50.000 19.50 0.00 32.35 3.51
6531 7973 2.542595 CGCGGTCTTTGTATAACCATCC 59.457 50.000 0.00 0.00 32.35 3.51
6532 7974 3.537580 GCGGTCTTTGTATAACCATCCA 58.462 45.455 0.00 0.00 32.35 3.41
6533 7975 3.942748 GCGGTCTTTGTATAACCATCCAA 59.057 43.478 0.00 0.00 32.35 3.53
6534 7976 4.035208 GCGGTCTTTGTATAACCATCCAAG 59.965 45.833 0.00 0.00 32.35 3.61
6535 7977 4.035208 CGGTCTTTGTATAACCATCCAAGC 59.965 45.833 0.00 0.00 32.35 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.015577 TGAATTTTTAGTCGTGAACATGTTTTC 57.984 29.630 13.36 8.02 0.00 2.29
215 302 8.564574 TGTACATTTGTGAACTTATTTCCTCAC 58.435 33.333 0.00 0.00 38.91 3.51
279 366 6.437793 TCCCCCTCAAATTCGCTTTTTAAATA 59.562 34.615 0.00 0.00 0.00 1.40
281 368 4.589374 TCCCCCTCAAATTCGCTTTTTAAA 59.411 37.500 0.00 0.00 0.00 1.52
353 444 3.958147 AGTCCGTGGACCTTTTCAATTTT 59.042 39.130 15.28 0.00 45.59 1.82
472 563 3.431207 GGCTGCGTACTATAGTCCCAAAA 60.431 47.826 9.12 0.00 0.00 2.44
479 570 3.297736 AGGAAAGGCTGCGTACTATAGT 58.702 45.455 10.87 10.87 0.00 2.12
525 616 1.002888 AGGTCACGAGTTCGAGTCCTA 59.997 52.381 13.75 0.00 43.43 2.94
618 710 6.661805 AGGTAGTTTTTGTTCCTTTTCACTCA 59.338 34.615 0.00 0.00 0.00 3.41
810 903 0.179059 TGTCGTTTGCAGAGAAGGCA 60.179 50.000 0.00 0.00 40.00 4.75
811 904 0.235926 GTGTCGTTTGCAGAGAAGGC 59.764 55.000 0.00 0.00 0.00 4.35
812 905 0.508641 CGTGTCGTTTGCAGAGAAGG 59.491 55.000 0.00 0.00 0.00 3.46
813 906 1.487482 TCGTGTCGTTTGCAGAGAAG 58.513 50.000 0.00 0.00 0.00 2.85
898 991 3.378911 TTGTTCCTGCGAAAAATTCCC 57.621 42.857 0.00 0.00 0.00 3.97
903 996 2.223711 GGAGCTTTGTTCCTGCGAAAAA 60.224 45.455 0.00 0.00 30.11 1.94
904 997 1.336755 GGAGCTTTGTTCCTGCGAAAA 59.663 47.619 0.00 0.00 30.11 2.29
1319 1433 3.296709 CTACCTGGTTGCGCTCGGT 62.297 63.158 9.73 10.19 0.00 4.69
1384 1501 0.370273 GGCTGGATATTTATCGCGCG 59.630 55.000 26.76 26.76 32.70 6.86
1421 1538 0.668706 CTTATCCATGGAGCGAGGCG 60.669 60.000 21.33 0.37 0.00 5.52
1499 1616 7.630082 ACCTAGGAAGTGTGCAATTATAGAAA 58.370 34.615 17.98 0.00 0.00 2.52
1503 1620 6.069905 TGGAACCTAGGAAGTGTGCAATTATA 60.070 38.462 17.98 0.00 0.00 0.98
1504 1621 5.193679 GGAACCTAGGAAGTGTGCAATTAT 58.806 41.667 17.98 0.00 0.00 1.28
1505 1622 4.042311 TGGAACCTAGGAAGTGTGCAATTA 59.958 41.667 17.98 0.00 0.00 1.40
1506 1623 3.181434 TGGAACCTAGGAAGTGTGCAATT 60.181 43.478 17.98 0.00 0.00 2.32
1508 1625 1.771854 TGGAACCTAGGAAGTGTGCAA 59.228 47.619 17.98 0.00 0.00 4.08
1509 1626 1.347707 CTGGAACCTAGGAAGTGTGCA 59.652 52.381 17.98 5.58 0.00 4.57
1510 1627 1.348036 ACTGGAACCTAGGAAGTGTGC 59.652 52.381 17.98 0.89 0.00 4.57
1513 1630 2.637872 TGGAACTGGAACCTAGGAAGTG 59.362 50.000 17.98 3.97 0.00 3.16
1514 1631 2.907042 CTGGAACTGGAACCTAGGAAGT 59.093 50.000 17.98 10.32 0.00 3.01
1515 1632 2.355209 GCTGGAACTGGAACCTAGGAAG 60.355 54.545 17.98 9.67 0.00 3.46
1516 1633 1.628846 GCTGGAACTGGAACCTAGGAA 59.371 52.381 17.98 0.00 0.00 3.36
1517 1634 1.203313 AGCTGGAACTGGAACCTAGGA 60.203 52.381 17.98 0.00 0.00 2.94
1518 1635 1.280457 AGCTGGAACTGGAACCTAGG 58.720 55.000 7.41 7.41 0.00 3.02
1519 1636 2.355209 GGAAGCTGGAACTGGAACCTAG 60.355 54.545 0.00 0.00 0.00 3.02
1520 1637 1.628846 GGAAGCTGGAACTGGAACCTA 59.371 52.381 0.00 0.00 0.00 3.08
1521 1638 0.402121 GGAAGCTGGAACTGGAACCT 59.598 55.000 0.00 0.00 0.00 3.50
1522 1639 0.402121 AGGAAGCTGGAACTGGAACC 59.598 55.000 0.00 0.00 0.00 3.62
1523 1640 2.355209 CCTAGGAAGCTGGAACTGGAAC 60.355 54.545 1.05 0.00 0.00 3.62
1524 1641 1.909302 CCTAGGAAGCTGGAACTGGAA 59.091 52.381 1.05 0.00 0.00 3.53
1525 1642 1.203313 ACCTAGGAAGCTGGAACTGGA 60.203 52.381 17.98 0.00 0.00 3.86
1526 1643 1.280457 ACCTAGGAAGCTGGAACTGG 58.720 55.000 17.98 0.00 0.00 4.00
1527 1644 2.303022 TGAACCTAGGAAGCTGGAACTG 59.697 50.000 17.98 0.00 0.00 3.16
1528 1645 2.303311 GTGAACCTAGGAAGCTGGAACT 59.697 50.000 17.98 0.00 0.00 3.01
1529 1646 2.038557 TGTGAACCTAGGAAGCTGGAAC 59.961 50.000 17.98 2.79 0.00 3.62
1530 1647 2.303022 CTGTGAACCTAGGAAGCTGGAA 59.697 50.000 17.98 0.00 0.00 3.53
1531 1648 1.902508 CTGTGAACCTAGGAAGCTGGA 59.097 52.381 17.98 0.00 0.00 3.86
1532 1649 1.625818 ACTGTGAACCTAGGAAGCTGG 59.374 52.381 17.98 3.97 0.00 4.85
1533 1650 3.511934 AGTACTGTGAACCTAGGAAGCTG 59.488 47.826 17.98 8.89 0.00 4.24
1534 1651 3.511934 CAGTACTGTGAACCTAGGAAGCT 59.488 47.826 17.98 0.00 0.00 3.74
1535 1652 3.510360 TCAGTACTGTGAACCTAGGAAGC 59.490 47.826 21.99 4.52 0.00 3.86
1536 1653 5.010933 TCTCAGTACTGTGAACCTAGGAAG 58.989 45.833 22.04 8.87 31.13 3.46
1537 1654 4.994282 TCTCAGTACTGTGAACCTAGGAA 58.006 43.478 22.04 0.00 31.13 3.36
1538 1655 4.652679 TCTCAGTACTGTGAACCTAGGA 57.347 45.455 22.04 0.65 31.13 2.94
1539 1656 5.923733 AATCTCAGTACTGTGAACCTAGG 57.076 43.478 26.43 7.41 36.78 3.02
1540 1657 8.687242 TCATAAATCTCAGTACTGTGAACCTAG 58.313 37.037 26.43 17.69 36.78 3.02
1541 1658 8.589701 TCATAAATCTCAGTACTGTGAACCTA 57.410 34.615 26.43 18.53 36.78 3.08
1542 1659 7.482169 TCATAAATCTCAGTACTGTGAACCT 57.518 36.000 26.43 17.31 36.78 3.50
1543 1660 8.547967 TTTCATAAATCTCAGTACTGTGAACC 57.452 34.615 26.43 0.00 36.78 3.62
1713 1835 9.489084 GCTTGAGACACACACCAAATATATATA 57.511 33.333 0.00 0.00 0.00 0.86
1714 1836 8.213679 AGCTTGAGACACACACCAAATATATAT 58.786 33.333 0.00 0.00 0.00 0.86
1730 1852 4.377021 ACGTGTAAAATCAGCTTGAGACA 58.623 39.130 0.00 0.00 0.00 3.41
1782 1904 4.101114 TCAAGAGTCAACCCTATTGCCTA 58.899 43.478 0.00 0.00 34.46 3.93
1970 2092 2.680370 CCCCTTGGCAGACCCCTAC 61.680 68.421 0.00 0.00 33.59 3.18
1985 2107 6.607735 TTTAATAAATGTCGTTCGATCCCC 57.392 37.500 0.00 0.00 0.00 4.81
2407 3632 3.896648 AACAACGAGCAAAGTGTATGG 57.103 42.857 0.00 0.00 0.00 2.74
2437 3662 6.256819 TGAGAGAGGAGAGAGAATAAAACCA 58.743 40.000 0.00 0.00 0.00 3.67
2466 3691 2.371841 TGACACATAGGAACTGCCAGTT 59.628 45.455 10.45 10.45 41.95 3.16
2501 3726 4.902443 TTTACAAAGGCGTGACATCAAA 57.098 36.364 0.00 0.00 0.00 2.69
2732 3958 7.797038 ACTATAACCATTTATTTGACCGACC 57.203 36.000 0.00 0.00 0.00 4.79
2736 3962 7.069455 AGGCCAACTATAACCATTTATTTGACC 59.931 37.037 5.01 0.00 0.00 4.02
2995 4240 0.871722 GCAATACGTGTGTGAAGCCA 59.128 50.000 0.00 0.00 0.00 4.75
3011 4256 3.712907 GTCCCTAGCCCCACGCAA 61.713 66.667 0.00 0.00 41.38 4.85
3104 4349 3.114643 TGATCACTAGACCCACCATCA 57.885 47.619 0.00 0.00 0.00 3.07
3125 4370 8.859090 ACTTCAATAGTGATTTCAATTTCACCA 58.141 29.630 0.00 0.00 42.56 4.17
3143 4388 3.753272 GCTCAGCAGTTGGAACTTCAATA 59.247 43.478 0.00 0.00 37.08 1.90
3208 4453 1.271102 GGCGAACTGAACTCAGAGAGT 59.729 52.381 13.61 0.00 46.59 3.24
3224 4469 1.807981 CCTCGTATTTGTGCGGCGA 60.808 57.895 12.98 0.00 0.00 5.54
3572 4817 5.560722 TGTCATAAACAGAAGGAACTGGA 57.439 39.130 0.00 0.00 41.59 3.86
3883 5128 3.865745 AGCGCTATTGTTGTGTAGATGTC 59.134 43.478 8.99 0.00 0.00 3.06
3922 5167 3.200593 CCGCAGACTGCTGATGCC 61.201 66.667 24.36 0.00 45.17 4.40
4278 5523 6.655003 GGACTTTCCTGATTTGTCATTCTACA 59.345 38.462 0.00 0.00 32.53 2.74
4321 5566 4.019792 ACATGTTGACTATGGCTTGACA 57.980 40.909 0.00 0.00 0.00 3.58
4509 5754 3.319405 ACGATTTGTAGCGGAGAGATCAT 59.681 43.478 0.00 0.00 37.52 2.45
4586 5831 0.030504 TGGATGTTGCAGCACAAACG 59.969 50.000 5.00 0.00 40.82 3.60
4588 5833 2.364647 TCATTGGATGTTGCAGCACAAA 59.635 40.909 5.00 0.95 40.82 2.83
4590 5835 1.618487 TCATTGGATGTTGCAGCACA 58.382 45.000 5.00 0.00 0.00 4.57
4605 5850 1.629353 TGCCATGGTGCCAATTTCATT 59.371 42.857 14.67 0.00 0.00 2.57
4616 5861 0.319211 CAACTGTTGCTGCCATGGTG 60.319 55.000 14.67 8.06 0.00 4.17
4620 5865 1.696063 ACTTCAACTGTTGCTGCCAT 58.304 45.000 15.52 0.00 0.00 4.40
4632 5877 7.148137 TGGTCCAGAACTTTTTCTAACTTCAAC 60.148 37.037 0.00 0.00 40.34 3.18
4649 5894 2.879233 GCCACGGTCTGGTCCAGAA 61.879 63.158 23.49 5.06 42.46 3.02
4686 5931 3.258123 TGATCATCACGAGTTCCAGAACA 59.742 43.478 12.76 0.00 43.47 3.18
4696 5941 3.740631 TGGATCCTTGATCATCACGAG 57.259 47.619 14.23 0.00 40.50 4.18
4697 5942 4.486125 TTTGGATCCTTGATCATCACGA 57.514 40.909 14.23 0.00 40.50 4.35
4737 5982 1.291877 CGAACGGCTGAAGGTTCCTG 61.292 60.000 0.00 0.00 39.42 3.86
4791 6036 8.244113 AGAACTTTTTCTAACTTCAACTGTTGG 58.756 33.333 19.55 7.83 40.54 3.77
4854 6099 0.460109 TGATCATCACGCGTTCCAGG 60.460 55.000 10.22 0.00 0.00 4.45
4902 6147 1.291877 CGAACGGCTGAAGGTTCCTG 61.292 60.000 0.00 0.00 39.42 3.86
4920 6165 4.418013 TTTCATTGGATGTTACAGCACG 57.582 40.909 2.31 0.00 0.00 5.34
4953 6198 6.751514 TTTTCTAACTTCAACTGTTGCTGA 57.248 33.333 15.52 3.70 0.00 4.26
4985 6230 0.111832 TGGACTCACCACGGTCTAGT 59.888 55.000 1.25 1.25 44.64 2.57
4996 6241 4.058817 ACGATGTTTTCTCTTGGACTCAC 58.941 43.478 0.00 0.00 0.00 3.51
4999 6244 4.752101 CAGAACGATGTTTTCTCTTGGACT 59.248 41.667 0.00 0.00 30.56 3.85
5000 6245 4.083802 CCAGAACGATGTTTTCTCTTGGAC 60.084 45.833 0.00 0.00 30.56 4.02
5027 6272 2.245159 TGGATCCTTGATCATCACGC 57.755 50.000 14.23 0.00 40.50 5.34
5048 6293 3.713826 TTATCGCTCTTCCTGGGTTTT 57.286 42.857 0.00 0.00 0.00 2.43
5194 6440 7.119699 CACAGGCAGTTTTTACAGATCAGATAA 59.880 37.037 0.00 0.00 0.00 1.75
5216 6463 9.836379 TTGAATCTGTCAGAACCTGGATCACAG 62.836 44.444 6.64 14.53 41.40 3.66
5231 6478 1.945819 GCGGCTTCCTTGAATCTGTCA 60.946 52.381 0.00 0.00 0.00 3.58
5367 6614 1.809619 TGTTGGCTATCGCTGACGC 60.810 57.895 0.00 0.00 39.84 5.19
5487 6734 2.061028 CAAAAGGCAATTTGAGACGCC 58.939 47.619 9.40 0.00 41.73 5.68
5501 6748 6.419980 TTTTTCATTCACAACTGCAAAAGG 57.580 33.333 0.00 0.00 0.00 3.11
5546 6794 9.378551 GGAAATGTACATACAACATCTGTCTAA 57.621 33.333 9.21 0.00 39.99 2.10
5590 6838 2.688958 CCACTACACAGCTAGGTAGGTC 59.311 54.545 21.41 0.00 40.96 3.85
5764 7026 1.336440 CAGCCAACGTTCACAAATCCA 59.664 47.619 0.00 0.00 0.00 3.41
5778 7040 0.114168 AGCCACCCATTAACAGCCAA 59.886 50.000 0.00 0.00 0.00 4.52
5792 7054 1.609072 GGAGACTTTTTGTCCAGCCAC 59.391 52.381 0.00 0.00 46.46 5.01
5814 7076 1.301293 CAGCTGGGTTTCCCTCCTC 59.699 63.158 5.57 0.00 45.70 3.71
5900 7305 1.228894 TCAGCGGAAGACCTGGTCT 60.229 57.895 23.49 23.49 45.64 3.85
5901 7306 1.216710 CTCAGCGGAAGACCTGGTC 59.783 63.158 19.20 19.20 0.00 4.02
5902 7307 2.286523 CCTCAGCGGAAGACCTGGT 61.287 63.158 0.00 0.00 33.16 4.00
5903 7308 1.954362 CTCCTCAGCGGAAGACCTGG 61.954 65.000 0.00 0.00 42.53 4.45
5905 7310 0.251832 TTCTCCTCAGCGGAAGACCT 60.252 55.000 0.00 0.00 42.53 3.85
5906 7311 0.608640 TTTCTCCTCAGCGGAAGACC 59.391 55.000 0.00 0.00 42.53 3.85
5928 7339 5.783111 ACAATATTGGAAGGTTTCAGCAAC 58.217 37.500 19.37 0.00 34.18 4.17
5946 7365 5.249852 AGGCTTGGACCTTACACTTACAATA 59.750 40.000 0.00 0.00 36.28 1.90
5967 7386 5.669477 TGTATAAATCATTTGGGCAAAGGC 58.331 37.500 0.00 0.00 40.13 4.35
5968 7387 6.258507 GCTTGTATAAATCATTTGGGCAAAGG 59.741 38.462 0.00 0.00 33.32 3.11
5973 7399 5.068987 TCCAGCTTGTATAAATCATTTGGGC 59.931 40.000 0.00 0.00 0.00 5.36
6200 7631 9.719355 AACACTGGAAATTTTCTTTTGTACTTT 57.281 25.926 8.93 0.00 0.00 2.66
6217 7648 3.452990 TGTGTGGTAGAGAAACACTGGAA 59.547 43.478 6.71 0.00 43.63 3.53
6219 7650 3.469008 TGTGTGGTAGAGAAACACTGG 57.531 47.619 6.71 0.00 43.63 4.00
6222 7653 4.272748 GGACTTTGTGTGGTAGAGAAACAC 59.727 45.833 0.00 0.00 43.57 3.32
6223 7654 4.080807 TGGACTTTGTGTGGTAGAGAAACA 60.081 41.667 0.00 0.00 0.00 2.83
6224 7655 4.448210 TGGACTTTGTGTGGTAGAGAAAC 58.552 43.478 0.00 0.00 0.00 2.78
6225 7656 4.764050 TGGACTTTGTGTGGTAGAGAAA 57.236 40.909 0.00 0.00 0.00 2.52
6228 7659 6.516718 CCTATATGGACTTTGTGTGGTAGAG 58.483 44.000 0.00 0.00 38.35 2.43
6229 7660 5.163343 GCCTATATGGACTTTGTGTGGTAGA 60.163 44.000 0.00 0.00 38.35 2.59
6230 7661 5.057149 GCCTATATGGACTTTGTGTGGTAG 58.943 45.833 0.00 0.00 38.35 3.18
6231 7662 4.719773 AGCCTATATGGACTTTGTGTGGTA 59.280 41.667 0.00 0.00 38.35 3.25
6232 7663 3.523564 AGCCTATATGGACTTTGTGTGGT 59.476 43.478 0.00 0.00 38.35 4.16
6233 7664 4.156455 AGCCTATATGGACTTTGTGTGG 57.844 45.455 0.00 0.00 38.35 4.17
6238 7674 4.593206 TGGGTCTAGCCTATATGGACTTTG 59.407 45.833 0.00 0.00 38.35 2.77
6241 7677 3.403051 ACTGGGTCTAGCCTATATGGACT 59.597 47.826 0.00 0.00 38.35 3.85
6248 7684 1.115930 CCGCACTGGGTCTAGCCTAT 61.116 60.000 0.00 0.00 37.43 2.57
6255 7691 2.224159 ATGGTTCCGCACTGGGTCT 61.224 57.895 0.00 0.00 38.76 3.85
6266 7702 1.928503 CATTGAAATGCGCATGGTTCC 59.071 47.619 26.09 11.72 0.00 3.62
6282 7724 1.815003 GGAACCAAGAGGCAGACATTG 59.185 52.381 0.00 0.00 39.06 2.82
6286 7728 0.108585 TGTGGAACCAAGAGGCAGAC 59.891 55.000 0.00 0.00 39.06 3.51
6296 7738 2.745281 GCGCTACTAAATTGTGGAACCA 59.255 45.455 0.00 0.00 34.36 3.67
6309 7751 2.287393 TTCAAAGATGCGCGCTACTA 57.713 45.000 33.29 12.75 0.00 1.82
6313 7755 1.268999 TGTTTTTCAAAGATGCGCGCT 60.269 42.857 33.29 17.95 0.00 5.92
6314 7756 1.127701 TGTTTTTCAAAGATGCGCGC 58.872 45.000 27.26 27.26 0.00 6.86
6315 7757 2.471103 GCATGTTTTTCAAAGATGCGCG 60.471 45.455 13.61 0.00 30.80 6.86
6316 7758 2.159801 GGCATGTTTTTCAAAGATGCGC 60.160 45.455 19.35 0.00 36.88 6.09
6317 7759 3.058450 TGGCATGTTTTTCAAAGATGCG 58.942 40.909 19.35 0.00 36.88 4.73
6318 7760 4.933400 AGATGGCATGTTTTTCAAAGATGC 59.067 37.500 18.38 18.38 36.03 3.91
6319 7761 5.579511 GGAGATGGCATGTTTTTCAAAGATG 59.420 40.000 3.81 2.72 0.00 2.90
6320 7762 5.246656 TGGAGATGGCATGTTTTTCAAAGAT 59.753 36.000 3.81 0.00 0.00 2.40
6321 7763 4.588106 TGGAGATGGCATGTTTTTCAAAGA 59.412 37.500 3.81 0.00 0.00 2.52
6322 7764 4.687483 GTGGAGATGGCATGTTTTTCAAAG 59.313 41.667 3.81 0.00 0.00 2.77
6323 7765 4.344679 AGTGGAGATGGCATGTTTTTCAAA 59.655 37.500 3.81 0.00 0.00 2.69
6324 7766 3.896888 AGTGGAGATGGCATGTTTTTCAA 59.103 39.130 3.81 0.00 0.00 2.69
6325 7767 3.256383 CAGTGGAGATGGCATGTTTTTCA 59.744 43.478 3.81 0.00 0.00 2.69
6326 7768 3.256631 ACAGTGGAGATGGCATGTTTTTC 59.743 43.478 3.81 0.00 0.00 2.29
6327 7769 3.233507 ACAGTGGAGATGGCATGTTTTT 58.766 40.909 3.81 0.00 0.00 1.94
6328 7770 2.821969 GACAGTGGAGATGGCATGTTTT 59.178 45.455 3.81 0.00 0.00 2.43
6329 7771 2.440409 GACAGTGGAGATGGCATGTTT 58.560 47.619 3.81 0.00 0.00 2.83
6330 7772 1.340405 GGACAGTGGAGATGGCATGTT 60.340 52.381 3.81 0.00 0.00 2.71
6331 7773 0.254178 GGACAGTGGAGATGGCATGT 59.746 55.000 3.81 0.00 0.00 3.21
6332 7774 0.253894 TGGACAGTGGAGATGGCATG 59.746 55.000 3.81 0.00 0.00 4.06
6333 7775 0.994247 TTGGACAGTGGAGATGGCAT 59.006 50.000 0.00 0.00 0.00 4.40
6334 7776 0.325933 CTTGGACAGTGGAGATGGCA 59.674 55.000 0.00 0.00 0.00 4.92
6335 7777 0.393537 CCTTGGACAGTGGAGATGGC 60.394 60.000 0.00 0.00 0.00 4.40
6336 7778 0.254178 CCCTTGGACAGTGGAGATGG 59.746 60.000 0.00 0.00 0.00 3.51
6337 7779 0.254178 CCCCTTGGACAGTGGAGATG 59.746 60.000 0.00 0.00 0.00 2.90
6338 7780 0.119155 TCCCCTTGGACAGTGGAGAT 59.881 55.000 0.00 0.00 35.03 2.75
6339 7781 0.545309 CTCCCCTTGGACAGTGGAGA 60.545 60.000 0.00 0.00 44.34 3.71
6340 7782 1.557269 CCTCCCCTTGGACAGTGGAG 61.557 65.000 0.00 0.00 41.84 3.86
6341 7783 1.538876 CCTCCCCTTGGACAGTGGA 60.539 63.158 0.00 0.00 35.03 4.02
6342 7784 2.606587 CCCTCCCCTTGGACAGTGG 61.607 68.421 0.00 0.00 35.03 4.00
6343 7785 3.081554 CCCTCCCCTTGGACAGTG 58.918 66.667 0.00 0.00 35.03 3.66
6344 7786 2.936032 GCCCTCCCCTTGGACAGT 60.936 66.667 0.00 0.00 35.03 3.55
6345 7787 2.935481 TGCCCTCCCCTTGGACAG 60.935 66.667 0.00 0.00 35.03 3.51
6346 7788 3.256960 GTGCCCTCCCCTTGGACA 61.257 66.667 0.00 0.00 35.03 4.02
6347 7789 2.366153 TTTGTGCCCTCCCCTTGGAC 62.366 60.000 0.00 0.00 35.03 4.02
6348 7790 2.080336 CTTTGTGCCCTCCCCTTGGA 62.080 60.000 0.00 0.00 38.75 3.53
6349 7791 1.607467 CTTTGTGCCCTCCCCTTGG 60.607 63.158 0.00 0.00 0.00 3.61
6350 7792 0.895559 GTCTTTGTGCCCTCCCCTTG 60.896 60.000 0.00 0.00 0.00 3.61
6351 7793 1.460699 GTCTTTGTGCCCTCCCCTT 59.539 57.895 0.00 0.00 0.00 3.95
6352 7794 2.895424 CGTCTTTGTGCCCTCCCCT 61.895 63.158 0.00 0.00 0.00 4.79
6353 7795 2.359975 CGTCTTTGTGCCCTCCCC 60.360 66.667 0.00 0.00 0.00 4.81
6354 7796 1.072505 TTCGTCTTTGTGCCCTCCC 59.927 57.895 0.00 0.00 0.00 4.30
6355 7797 0.534203 TGTTCGTCTTTGTGCCCTCC 60.534 55.000 0.00 0.00 0.00 4.30
6356 7798 1.305201 TTGTTCGTCTTTGTGCCCTC 58.695 50.000 0.00 0.00 0.00 4.30
6357 7799 1.676006 CTTTGTTCGTCTTTGTGCCCT 59.324 47.619 0.00 0.00 0.00 5.19
6358 7800 1.269051 CCTTTGTTCGTCTTTGTGCCC 60.269 52.381 0.00 0.00 0.00 5.36
6359 7801 1.673920 TCCTTTGTTCGTCTTTGTGCC 59.326 47.619 0.00 0.00 0.00 5.01
6360 7802 3.414549 TTCCTTTGTTCGTCTTTGTGC 57.585 42.857 0.00 0.00 0.00 4.57
6361 7803 6.265577 AGAAATTCCTTTGTTCGTCTTTGTG 58.734 36.000 0.00 0.00 0.00 3.33
6362 7804 6.451064 AGAAATTCCTTTGTTCGTCTTTGT 57.549 33.333 0.00 0.00 0.00 2.83
6363 7805 6.751888 ACAAGAAATTCCTTTGTTCGTCTTTG 59.248 34.615 0.00 0.00 0.00 2.77
6364 7806 6.751888 CACAAGAAATTCCTTTGTTCGTCTTT 59.248 34.615 0.00 0.00 0.00 2.52
6365 7807 6.265577 CACAAGAAATTCCTTTGTTCGTCTT 58.734 36.000 0.00 0.00 0.00 3.01
6366 7808 5.733373 GCACAAGAAATTCCTTTGTTCGTCT 60.733 40.000 0.00 0.00 0.00 4.18
6367 7809 4.441087 GCACAAGAAATTCCTTTGTTCGTC 59.559 41.667 0.00 0.00 0.00 4.20
6368 7810 4.142271 TGCACAAGAAATTCCTTTGTTCGT 60.142 37.500 0.00 0.00 0.00 3.85
6369 7811 4.358851 TGCACAAGAAATTCCTTTGTTCG 58.641 39.130 0.00 0.00 0.00 3.95
6370 7812 4.209911 GCTGCACAAGAAATTCCTTTGTTC 59.790 41.667 0.00 0.00 0.00 3.18
6371 7813 4.122046 GCTGCACAAGAAATTCCTTTGTT 58.878 39.130 0.00 0.00 0.00 2.83
6372 7814 3.721035 GCTGCACAAGAAATTCCTTTGT 58.279 40.909 0.00 0.00 0.00 2.83
6373 7815 2.727798 CGCTGCACAAGAAATTCCTTTG 59.272 45.455 0.00 0.00 0.00 2.77
6374 7816 2.288395 CCGCTGCACAAGAAATTCCTTT 60.288 45.455 0.00 0.00 0.00 3.11
6375 7817 1.270550 CCGCTGCACAAGAAATTCCTT 59.729 47.619 0.00 0.00 0.00 3.36
6376 7818 0.883833 CCGCTGCACAAGAAATTCCT 59.116 50.000 0.00 0.00 0.00 3.36
6377 7819 0.733909 GCCGCTGCACAAGAAATTCC 60.734 55.000 0.00 0.00 37.47 3.01
6378 7820 0.039256 TGCCGCTGCACAAGAAATTC 60.039 50.000 0.00 0.00 44.23 2.17
6379 7821 2.040330 TGCCGCTGCACAAGAAATT 58.960 47.368 0.00 0.00 44.23 1.82
6380 7822 3.762293 TGCCGCTGCACAAGAAAT 58.238 50.000 0.00 0.00 44.23 2.17
6389 7831 1.293267 AATGTTTGCAATGCCGCTGC 61.293 50.000 1.53 0.00 40.35 5.25
6390 7832 0.440758 CAATGTTTGCAATGCCGCTG 59.559 50.000 1.53 0.00 0.00 5.18
6391 7833 2.830264 CAATGTTTGCAATGCCGCT 58.170 47.368 1.53 0.00 0.00 5.52
6401 7843 3.740321 GGTATTGGTGTGTGCAATGTTTG 59.260 43.478 0.00 0.00 0.00 2.93
6402 7844 3.386078 TGGTATTGGTGTGTGCAATGTTT 59.614 39.130 0.00 0.00 0.00 2.83
6403 7845 2.961741 TGGTATTGGTGTGTGCAATGTT 59.038 40.909 0.00 0.00 0.00 2.71
6404 7846 2.295909 GTGGTATTGGTGTGTGCAATGT 59.704 45.455 0.00 0.00 0.00 2.71
6405 7847 2.352617 GGTGGTATTGGTGTGTGCAATG 60.353 50.000 0.00 0.00 0.00 2.82
6406 7848 1.892474 GGTGGTATTGGTGTGTGCAAT 59.108 47.619 0.00 0.00 0.00 3.56
6407 7849 1.323412 GGTGGTATTGGTGTGTGCAA 58.677 50.000 0.00 0.00 0.00 4.08
6408 7850 0.183731 TGGTGGTATTGGTGTGTGCA 59.816 50.000 0.00 0.00 0.00 4.57
6409 7851 0.596082 GTGGTGGTATTGGTGTGTGC 59.404 55.000 0.00 0.00 0.00 4.57
6410 7852 1.606668 GTGTGGTGGTATTGGTGTGTG 59.393 52.381 0.00 0.00 0.00 3.82
6411 7853 1.812324 CGTGTGGTGGTATTGGTGTGT 60.812 52.381 0.00 0.00 0.00 3.72
6412 7854 0.871722 CGTGTGGTGGTATTGGTGTG 59.128 55.000 0.00 0.00 0.00 3.82
6413 7855 0.887387 GCGTGTGGTGGTATTGGTGT 60.887 55.000 0.00 0.00 0.00 4.16
6414 7856 0.886938 TGCGTGTGGTGGTATTGGTG 60.887 55.000 0.00 0.00 0.00 4.17
6415 7857 0.037590 ATGCGTGTGGTGGTATTGGT 59.962 50.000 0.00 0.00 0.00 3.67
6416 7858 0.451383 CATGCGTGTGGTGGTATTGG 59.549 55.000 0.00 0.00 0.00 3.16
6417 7859 0.179166 GCATGCGTGTGGTGGTATTG 60.179 55.000 0.00 0.00 0.00 1.90
6418 7860 0.322456 AGCATGCGTGTGGTGGTATT 60.322 50.000 13.01 0.00 0.00 1.89
6419 7861 0.744414 GAGCATGCGTGTGGTGGTAT 60.744 55.000 13.01 0.00 0.00 2.73
6420 7862 1.375396 GAGCATGCGTGTGGTGGTA 60.375 57.895 13.01 0.00 0.00 3.25
6421 7863 2.669569 GAGCATGCGTGTGGTGGT 60.670 61.111 13.01 0.00 0.00 4.16
6422 7864 3.792047 CGAGCATGCGTGTGGTGG 61.792 66.667 13.01 0.00 0.00 4.61
6423 7865 4.450122 GCGAGCATGCGTGTGGTG 62.450 66.667 13.01 0.00 0.00 4.17
6424 7866 4.986645 TGCGAGCATGCGTGTGGT 62.987 61.111 13.01 0.00 37.81 4.16
6425 7867 4.450122 GTGCGAGCATGCGTGTGG 62.450 66.667 13.01 2.12 37.81 4.17
6426 7868 2.891461 GATGTGCGAGCATGCGTGTG 62.891 60.000 13.01 4.59 37.81 3.82
6427 7869 2.743538 ATGTGCGAGCATGCGTGT 60.744 55.556 13.01 0.00 37.81 4.49
6428 7870 2.022346 GATGTGCGAGCATGCGTG 59.978 61.111 13.01 10.02 37.81 5.34
6429 7871 3.557479 CGATGTGCGAGCATGCGT 61.557 61.111 13.01 0.00 44.57 5.24
6430 7872 3.482716 GACGATGTGCGAGCATGCG 62.483 63.158 13.01 8.16 44.57 4.73
6431 7873 2.322422 GACGATGTGCGAGCATGC 59.678 61.111 10.51 10.51 44.57 4.06
6432 7874 1.360931 TTGGACGATGTGCGAGCATG 61.361 55.000 0.00 0.00 44.57 4.06
6433 7875 1.079197 TTGGACGATGTGCGAGCAT 60.079 52.632 0.00 0.00 44.57 3.79
6434 7876 1.737735 CTTGGACGATGTGCGAGCA 60.738 57.895 0.00 0.00 44.57 4.26
6435 7877 2.456119 CCTTGGACGATGTGCGAGC 61.456 63.158 0.00 0.00 44.57 5.03
6436 7878 0.389817 TTCCTTGGACGATGTGCGAG 60.390 55.000 0.00 0.00 44.57 5.03
6437 7879 0.034198 TTTCCTTGGACGATGTGCGA 59.966 50.000 0.00 0.00 44.57 5.10
6439 7881 3.575965 AATTTTCCTTGGACGATGTGC 57.424 42.857 0.00 0.00 0.00 4.57
6440 7882 4.083537 TCGAAATTTTCCTTGGACGATGTG 60.084 41.667 3.61 0.00 0.00 3.21
6441 7883 4.069304 TCGAAATTTTCCTTGGACGATGT 58.931 39.130 3.61 0.00 0.00 3.06
6442 7884 4.154195 ACTCGAAATTTTCCTTGGACGATG 59.846 41.667 3.61 0.00 0.00 3.84
6443 7885 4.324267 ACTCGAAATTTTCCTTGGACGAT 58.676 39.130 3.61 0.00 0.00 3.73
6444 7886 3.735591 ACTCGAAATTTTCCTTGGACGA 58.264 40.909 3.61 0.00 0.00 4.20
6445 7887 4.483476 AACTCGAAATTTTCCTTGGACG 57.517 40.909 3.61 0.00 0.00 4.79
6446 7888 6.308371 TGTAACTCGAAATTTTCCTTGGAC 57.692 37.500 3.61 0.00 0.00 4.02
6447 7889 6.945938 TTGTAACTCGAAATTTTCCTTGGA 57.054 33.333 3.61 0.00 0.00 3.53
6448 7890 8.587952 AATTTGTAACTCGAAATTTTCCTTGG 57.412 30.769 3.61 0.00 29.36 3.61
6449 7891 9.848172 CAAATTTGTAACTCGAAATTTTCCTTG 57.152 29.630 10.15 0.00 38.91 3.61
6450 7892 9.810545 TCAAATTTGTAACTCGAAATTTTCCTT 57.189 25.926 17.47 0.00 38.91 3.36
6451 7893 9.981114 ATCAAATTTGTAACTCGAAATTTTCCT 57.019 25.926 17.47 0.00 38.91 3.36
6475 7917 9.774742 CCTCTAGCTTAACACAAAATTACAATC 57.225 33.333 0.00 0.00 0.00 2.67
6476 7918 8.244113 GCCTCTAGCTTAACACAAAATTACAAT 58.756 33.333 0.00 0.00 38.99 2.71
6477 7919 7.229707 TGCCTCTAGCTTAACACAAAATTACAA 59.770 33.333 0.00 0.00 44.23 2.41
6478 7920 6.712998 TGCCTCTAGCTTAACACAAAATTACA 59.287 34.615 0.00 0.00 44.23 2.41
6479 7921 7.141100 TGCCTCTAGCTTAACACAAAATTAC 57.859 36.000 0.00 0.00 44.23 1.89
6480 7922 7.938140 ATGCCTCTAGCTTAACACAAAATTA 57.062 32.000 0.00 0.00 44.23 1.40
6481 7923 6.840780 ATGCCTCTAGCTTAACACAAAATT 57.159 33.333 0.00 0.00 44.23 1.82
6482 7924 6.840780 AATGCCTCTAGCTTAACACAAAAT 57.159 33.333 0.00 0.00 44.23 1.82
6483 7925 6.648879 AAATGCCTCTAGCTTAACACAAAA 57.351 33.333 0.00 0.00 44.23 2.44
6484 7926 6.150474 GGTAAATGCCTCTAGCTTAACACAAA 59.850 38.462 0.00 0.00 44.23 2.83
6485 7927 5.646360 GGTAAATGCCTCTAGCTTAACACAA 59.354 40.000 0.00 0.00 44.23 3.33
6486 7928 5.183228 GGTAAATGCCTCTAGCTTAACACA 58.817 41.667 0.00 0.00 44.23 3.72
6487 7929 4.575236 GGGTAAATGCCTCTAGCTTAACAC 59.425 45.833 0.00 0.00 44.23 3.32
6488 7930 4.682320 CGGGTAAATGCCTCTAGCTTAACA 60.682 45.833 0.00 0.00 44.23 2.41
6489 7931 3.808174 CGGGTAAATGCCTCTAGCTTAAC 59.192 47.826 0.00 0.00 44.23 2.01
6490 7932 3.743269 GCGGGTAAATGCCTCTAGCTTAA 60.743 47.826 0.00 0.00 44.23 1.85
6491 7933 2.224209 GCGGGTAAATGCCTCTAGCTTA 60.224 50.000 0.00 0.00 44.23 3.09
6492 7934 1.475213 GCGGGTAAATGCCTCTAGCTT 60.475 52.381 0.00 0.00 44.23 3.74
6493 7935 0.106894 GCGGGTAAATGCCTCTAGCT 59.893 55.000 0.00 0.00 44.23 3.32
6494 7936 1.222115 CGCGGGTAAATGCCTCTAGC 61.222 60.000 0.00 0.00 44.14 3.42
6495 7937 0.600255 CCGCGGGTAAATGCCTCTAG 60.600 60.000 20.10 0.00 0.00 2.43
6496 7938 1.332144 ACCGCGGGTAAATGCCTCTA 61.332 55.000 31.76 0.00 32.11 2.43
6497 7939 2.189521 CCGCGGGTAAATGCCTCT 59.810 61.111 20.10 0.00 0.00 3.69
6498 7940 2.124860 ACCGCGGGTAAATGCCTC 60.125 61.111 31.76 0.00 32.11 4.70
6499 7941 2.124860 GACCGCGGGTAAATGCCT 60.125 61.111 31.76 3.99 35.25 4.75
6500 7942 1.310216 AAAGACCGCGGGTAAATGCC 61.310 55.000 31.76 7.47 35.25 4.40
6501 7943 0.179174 CAAAGACCGCGGGTAAATGC 60.179 55.000 31.76 9.17 35.25 3.56
6502 7944 1.161843 ACAAAGACCGCGGGTAAATG 58.838 50.000 31.76 22.19 35.25 2.32
6503 7945 2.766345 TACAAAGACCGCGGGTAAAT 57.234 45.000 31.76 7.71 35.25 1.40
6504 7946 2.766345 ATACAAAGACCGCGGGTAAA 57.234 45.000 31.76 8.20 35.25 2.01
6505 7947 3.520569 GTTATACAAAGACCGCGGGTAA 58.479 45.455 31.76 11.47 35.25 2.85
6506 7948 2.159114 GGTTATACAAAGACCGCGGGTA 60.159 50.000 31.76 21.08 35.25 3.69
6507 7949 1.405933 GGTTATACAAAGACCGCGGGT 60.406 52.381 31.76 19.47 39.44 5.28
6508 7950 1.292992 GGTTATACAAAGACCGCGGG 58.707 55.000 31.76 13.93 0.00 6.13
6509 7951 2.012937 TGGTTATACAAAGACCGCGG 57.987 50.000 26.86 26.86 36.22 6.46
6510 7952 2.542595 GGATGGTTATACAAAGACCGCG 59.457 50.000 0.00 0.00 36.22 6.46
6511 7953 3.537580 TGGATGGTTATACAAAGACCGC 58.462 45.455 0.00 0.00 36.22 5.68
6512 7954 4.035208 GCTTGGATGGTTATACAAAGACCG 59.965 45.833 0.00 0.00 36.70 4.79
6513 7955 5.500645 GCTTGGATGGTTATACAAAGACC 57.499 43.478 0.00 0.00 36.70 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.