Multiple sequence alignment - TraesCS7D01G214400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G214400 chr7D 100.000 3080 0 0 1 3080 174292708 174295787 0.000000e+00 5688
1 TraesCS7D01G214400 chr7D 84.419 1136 150 21 1036 2160 568257989 568259108 0.000000e+00 1092
2 TraesCS7D01G214400 chr7D 85.855 813 109 3 1342 2154 568273077 568273883 0.000000e+00 859
3 TraesCS7D01G214400 chr7D 81.570 293 42 9 1044 1327 568272382 568272671 6.640000e-57 231
4 TraesCS7D01G214400 chr7D 80.782 307 29 8 167 443 134509444 134509750 2.410000e-51 213
5 TraesCS7D01G214400 chr7B 92.638 2608 102 31 511 3078 138752604 138755161 0.000000e+00 3670
6 TraesCS7D01G214400 chr7B 83.753 794 104 18 1036 1821 623795791 623796567 0.000000e+00 728
7 TraesCS7D01G214400 chr7B 80.974 862 131 18 1044 1887 623818083 623818929 0.000000e+00 652
8 TraesCS7D01G214400 chr7B 86.377 345 44 3 1819 2160 623798256 623798600 1.040000e-99 374
9 TraesCS7D01G214400 chr7B 80.415 434 71 11 1035 1458 623754683 623755112 4.960000e-83 318
10 TraesCS7D01G214400 chr7A 92.543 2226 147 10 867 3078 176274797 176277017 0.000000e+00 3173
11 TraesCS7D01G214400 chr7A 84.615 260 18 6 1 257 729054413 729054173 3.970000e-59 239
12 TraesCS7D01G214400 chr7A 87.742 155 16 3 503 655 176272791 176272944 8.780000e-41 178
13 TraesCS7D01G214400 chr5D 91.051 447 31 4 1 443 320306159 320306600 2.040000e-166 595
14 TraesCS7D01G214400 chr5D 88.010 392 37 5 1 384 382012443 382012054 3.620000e-124 455
15 TraesCS7D01G214400 chr5D 88.205 390 27 5 1 384 398553585 398553209 6.060000e-122 448
16 TraesCS7D01G214400 chr5B 86.792 371 35 6 1 360 686045946 686046313 4.780000e-108 401
17 TraesCS7D01G214400 chr3A 85.864 382 34 4 1 376 30184456 30184823 3.720000e-104 388
18 TraesCS7D01G214400 chr5A 89.655 232 21 2 148 378 52525858 52526087 3.000000e-75 292
19 TraesCS7D01G214400 chr6B 78.205 468 49 22 2 443 404361896 404361456 1.830000e-62 250
20 TraesCS7D01G214400 chr1D 92.771 83 6 0 1 83 486922044 486922126 1.500000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G214400 chr7D 174292708 174295787 3079 False 5688.0 5688 100.0000 1 3080 1 chr7D.!!$F2 3079
1 TraesCS7D01G214400 chr7D 568257989 568259108 1119 False 1092.0 1092 84.4190 1036 2160 1 chr7D.!!$F3 1124
2 TraesCS7D01G214400 chr7D 568272382 568273883 1501 False 545.0 859 83.7125 1044 2154 2 chr7D.!!$F4 1110
3 TraesCS7D01G214400 chr7B 138752604 138755161 2557 False 3670.0 3670 92.6380 511 3078 1 chr7B.!!$F1 2567
4 TraesCS7D01G214400 chr7B 623818083 623818929 846 False 652.0 652 80.9740 1044 1887 1 chr7B.!!$F3 843
5 TraesCS7D01G214400 chr7B 623795791 623798600 2809 False 551.0 728 85.0650 1036 2160 2 chr7B.!!$F4 1124
6 TraesCS7D01G214400 chr7A 176272791 176277017 4226 False 1675.5 3173 90.1425 503 3078 2 chr7A.!!$F1 2575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.035056 AATTGGAGTGGAGGAAGGCG 60.035 55.0 0.0 0.0 0.00 5.52 F
276 277 0.104120 TATGCCGAAGATGTGGACGG 59.896 55.0 0.0 0.0 46.74 4.79 F
353 354 0.105778 GGAAGGAGCGATGGAGGAAG 59.894 60.0 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1211 3033 0.670546 ATCGGTGTCGTTTGAGGCAG 60.671 55.000 0.00 0.0 37.69 4.85 R
1942 5865 0.681733 AAGCACGCCTTCTTGAGAGA 59.318 50.000 0.00 0.0 0.00 3.10 R
2429 6373 7.992033 AGAACTCTGGATAATTCTGAATGAAGG 59.008 37.037 3.22 0.0 38.18 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.902318 GCAGGAGCAGAAAGGAGC 58.098 61.111 0.00 0.00 41.58 4.70
18 19 1.002868 GCAGGAGCAGAAAGGAGCA 60.003 57.895 0.00 0.00 41.58 4.26
19 20 0.394080 GCAGGAGCAGAAAGGAGCAT 60.394 55.000 0.00 0.00 41.58 3.79
20 21 1.666054 CAGGAGCAGAAAGGAGCATC 58.334 55.000 0.00 0.00 0.00 3.91
21 22 0.177604 AGGAGCAGAAAGGAGCATCG 59.822 55.000 0.00 0.00 34.37 3.84
22 23 0.176680 GGAGCAGAAAGGAGCATCGA 59.823 55.000 0.00 0.00 34.37 3.59
23 24 1.569708 GAGCAGAAAGGAGCATCGAG 58.430 55.000 0.00 0.00 34.37 4.04
24 25 0.461693 AGCAGAAAGGAGCATCGAGC 60.462 55.000 0.00 0.00 46.19 5.03
45 46 4.400961 GGCGGCTGACCTTGAGCT 62.401 66.667 0.00 0.00 36.63 4.09
46 47 2.817396 GCGGCTGACCTTGAGCTC 60.817 66.667 6.82 6.82 36.63 4.09
47 48 2.977178 CGGCTGACCTTGAGCTCT 59.023 61.111 16.19 0.00 36.63 4.09
48 49 1.153667 CGGCTGACCTTGAGCTCTC 60.154 63.158 16.19 4.42 36.63 3.20
49 50 1.881903 CGGCTGACCTTGAGCTCTCA 61.882 60.000 16.19 9.19 36.63 3.27
50 51 0.322975 GGCTGACCTTGAGCTCTCAA 59.677 55.000 16.19 11.37 46.27 3.02
59 60 2.775911 TGAGCTCTCAATTGGAGTGG 57.224 50.000 16.19 9.33 44.40 4.00
60 61 2.259917 TGAGCTCTCAATTGGAGTGGA 58.740 47.619 16.19 6.06 44.40 4.02
61 62 2.235650 TGAGCTCTCAATTGGAGTGGAG 59.764 50.000 16.19 13.43 44.40 3.86
62 63 1.558756 AGCTCTCAATTGGAGTGGAGG 59.441 52.381 19.00 1.98 44.40 4.30
63 64 1.556911 GCTCTCAATTGGAGTGGAGGA 59.443 52.381 19.00 2.43 44.40 3.71
64 65 2.026822 GCTCTCAATTGGAGTGGAGGAA 60.027 50.000 19.00 0.00 44.40 3.36
65 66 3.871485 CTCTCAATTGGAGTGGAGGAAG 58.129 50.000 5.42 0.00 44.40 3.46
66 67 2.573462 TCTCAATTGGAGTGGAGGAAGG 59.427 50.000 5.42 0.00 44.40 3.46
67 68 1.004745 TCAATTGGAGTGGAGGAAGGC 59.995 52.381 5.42 0.00 0.00 4.35
68 69 0.035056 AATTGGAGTGGAGGAAGGCG 60.035 55.000 0.00 0.00 0.00 5.52
69 70 0.909610 ATTGGAGTGGAGGAAGGCGA 60.910 55.000 0.00 0.00 0.00 5.54
70 71 1.827399 TTGGAGTGGAGGAAGGCGAC 61.827 60.000 0.00 0.00 0.00 5.19
71 72 2.579738 GAGTGGAGGAAGGCGACC 59.420 66.667 0.00 0.00 0.00 4.79
72 73 3.358076 GAGTGGAGGAAGGCGACCG 62.358 68.421 0.00 0.00 0.00 4.79
73 74 3.379445 GTGGAGGAAGGCGACCGA 61.379 66.667 0.00 0.00 0.00 4.69
74 75 3.379445 TGGAGGAAGGCGACCGAC 61.379 66.667 0.00 0.00 0.00 4.79
75 76 4.493747 GGAGGAAGGCGACCGACG 62.494 72.222 0.00 0.00 45.66 5.12
76 77 3.437795 GAGGAAGGCGACCGACGA 61.438 66.667 0.00 0.00 45.77 4.20
77 78 3.398353 GAGGAAGGCGACCGACGAG 62.398 68.421 0.00 0.00 45.77 4.18
78 79 4.493747 GGAAGGCGACCGACGAGG 62.494 72.222 0.00 0.00 45.77 4.63
79 80 4.493747 GAAGGCGACCGACGAGGG 62.494 72.222 0.00 1.14 46.96 4.30
81 82 4.816984 AGGCGACCGACGAGGGAT 62.817 66.667 0.00 0.00 46.96 3.85
82 83 4.267503 GGCGACCGACGAGGGATC 62.268 72.222 0.00 0.00 46.96 3.36
83 84 4.267503 GCGACCGACGAGGGATCC 62.268 72.222 1.92 1.92 46.96 3.36
84 85 3.950254 CGACCGACGAGGGATCCG 61.950 72.222 5.45 0.00 46.96 4.18
85 86 4.267503 GACCGACGAGGGATCCGC 62.268 72.222 5.45 0.00 46.96 5.54
87 88 4.271816 CCGACGAGGGATCCGCAG 62.272 72.222 5.45 1.37 35.97 5.18
88 89 4.933064 CGACGAGGGATCCGCAGC 62.933 72.222 5.45 0.00 0.00 5.25
89 90 4.593864 GACGAGGGATCCGCAGCC 62.594 72.222 5.45 0.00 0.00 4.85
91 92 4.598894 CGAGGGATCCGCAGCCAG 62.599 72.222 5.45 0.00 0.00 4.85
92 93 4.925861 GAGGGATCCGCAGCCAGC 62.926 72.222 5.45 0.00 40.87 4.85
114 115 4.292178 GAGGATCCGGAGCTGCGG 62.292 72.222 37.86 37.86 0.00 5.69
137 138 4.278513 CAGGCAACCGGTGGGGAA 62.279 66.667 8.52 0.00 39.97 3.97
138 139 3.264845 AGGCAACCGGTGGGGAAT 61.265 61.111 8.52 0.00 39.97 3.01
139 140 3.068064 GGCAACCGGTGGGGAATG 61.068 66.667 8.52 1.66 39.97 2.67
140 141 3.068064 GCAACCGGTGGGGAATGG 61.068 66.667 8.52 0.00 39.97 3.16
141 142 3.068064 CAACCGGTGGGGAATGGC 61.068 66.667 8.52 0.00 39.97 4.40
142 143 4.733542 AACCGGTGGGGAATGGCG 62.734 66.667 8.52 0.00 39.97 5.69
166 167 3.462678 GAGGGAGCTCCGGACCAC 61.463 72.222 26.36 11.41 41.52 4.16
176 177 4.760047 CGGACCACGGCAAGGGAG 62.760 72.222 0.00 0.00 39.42 4.30
185 186 2.110006 GCAAGGGAGCCTCCGATC 59.890 66.667 4.29 0.00 37.43 3.69
186 187 2.419198 CAAGGGAGCCTCCGATCG 59.581 66.667 8.51 8.51 37.43 3.69
187 188 2.042843 AAGGGAGCCTCCGATCGT 60.043 61.111 15.09 0.00 37.43 3.73
188 189 2.427245 AAGGGAGCCTCCGATCGTG 61.427 63.158 15.09 5.81 37.43 4.35
189 190 3.917760 GGGAGCCTCCGATCGTGG 61.918 72.222 15.09 16.17 37.43 4.94
190 191 4.593864 GGAGCCTCCGATCGTGGC 62.594 72.222 30.05 30.05 46.42 5.01
193 194 4.899239 GCCTCCGATCGTGGCAGG 62.899 72.222 31.32 22.54 45.46 4.85
194 195 4.227134 CCTCCGATCGTGGCAGGG 62.227 72.222 15.09 0.00 0.00 4.45
195 196 3.147595 CTCCGATCGTGGCAGGGA 61.148 66.667 15.09 0.98 0.00 4.20
196 197 2.682136 TCCGATCGTGGCAGGGAA 60.682 61.111 15.09 0.00 0.00 3.97
197 198 2.202932 CCGATCGTGGCAGGGAAG 60.203 66.667 15.09 0.00 0.00 3.46
198 199 2.202932 CGATCGTGGCAGGGAAGG 60.203 66.667 7.03 0.00 0.00 3.46
199 200 2.190578 GATCGTGGCAGGGAAGGG 59.809 66.667 7.42 0.00 0.00 3.95
200 201 4.115199 ATCGTGGCAGGGAAGGGC 62.115 66.667 7.42 0.00 0.00 5.19
215 216 2.998949 GGCGACCAAAGAGGGGAT 59.001 61.111 0.00 0.00 43.89 3.85
216 217 1.153147 GGCGACCAAAGAGGGGATC 60.153 63.158 0.00 0.00 43.89 3.36
217 218 1.521681 GCGACCAAAGAGGGGATCG 60.522 63.158 0.00 0.00 43.89 3.69
218 219 1.144057 CGACCAAAGAGGGGATCGG 59.856 63.158 0.00 0.00 43.89 4.18
219 220 1.527370 GACCAAAGAGGGGATCGGG 59.473 63.158 0.00 0.00 43.89 5.14
220 221 2.193248 CCAAAGAGGGGATCGGGC 59.807 66.667 0.00 0.00 0.00 6.13
221 222 2.378634 CCAAAGAGGGGATCGGGCT 61.379 63.158 0.00 0.00 0.00 5.19
222 223 1.147153 CAAAGAGGGGATCGGGCTC 59.853 63.158 0.00 0.00 0.00 4.70
223 224 1.003573 AAAGAGGGGATCGGGCTCT 59.996 57.895 0.00 0.00 0.00 4.09
224 225 1.051556 AAAGAGGGGATCGGGCTCTC 61.052 60.000 0.00 0.00 0.00 3.20
225 226 3.299190 GAGGGGATCGGGCTCTCG 61.299 72.222 0.00 0.00 0.00 4.04
226 227 3.793957 GAGGGGATCGGGCTCTCGA 62.794 68.421 0.00 0.00 43.61 4.04
231 232 4.277552 ATCGGGCTCTCGATTGGA 57.722 55.556 0.00 0.00 46.23 3.53
232 233 2.045280 ATCGGGCTCTCGATTGGAG 58.955 57.895 0.00 0.00 46.23 3.86
236 237 2.964389 GCTCTCGATTGGAGCGGC 60.964 66.667 9.12 0.00 45.01 6.53
237 238 2.656651 CTCTCGATTGGAGCGGCG 60.657 66.667 0.51 0.51 42.82 6.46
238 239 4.873129 TCTCGATTGGAGCGGCGC 62.873 66.667 26.86 26.86 42.82 6.53
259 260 3.861797 CAGCCGGCGGGGAAGTAT 61.862 66.667 29.48 0.00 38.47 2.12
260 261 3.861797 AGCCGGCGGGGAAGTATG 61.862 66.667 29.48 0.00 38.47 2.39
262 263 4.929707 CCGGCGGGGAAGTATGCC 62.930 72.222 20.56 0.00 44.09 4.40
264 265 3.857038 GGCGGGGAAGTATGCCGA 61.857 66.667 0.00 0.00 38.08 5.54
265 266 2.188469 GCGGGGAAGTATGCCGAA 59.812 61.111 0.00 0.00 38.08 4.30
266 267 1.887707 GCGGGGAAGTATGCCGAAG 60.888 63.158 0.00 0.00 38.08 3.79
267 268 1.820581 CGGGGAAGTATGCCGAAGA 59.179 57.895 0.00 0.00 38.08 2.87
268 269 0.393077 CGGGGAAGTATGCCGAAGAT 59.607 55.000 0.00 0.00 38.08 2.40
269 270 1.873903 CGGGGAAGTATGCCGAAGATG 60.874 57.143 0.00 0.00 38.08 2.90
270 271 1.141053 GGGGAAGTATGCCGAAGATGT 59.859 52.381 0.00 0.00 38.08 3.06
271 272 2.213499 GGGAAGTATGCCGAAGATGTG 58.787 52.381 0.00 0.00 29.87 3.21
272 273 2.213499 GGAAGTATGCCGAAGATGTGG 58.787 52.381 0.00 0.00 0.00 4.17
273 274 2.158957 GGAAGTATGCCGAAGATGTGGA 60.159 50.000 0.00 0.00 0.00 4.02
274 275 2.604046 AGTATGCCGAAGATGTGGAC 57.396 50.000 0.00 0.00 0.00 4.02
275 276 1.202417 AGTATGCCGAAGATGTGGACG 60.202 52.381 0.00 0.00 0.00 4.79
276 277 0.104120 TATGCCGAAGATGTGGACGG 59.896 55.000 0.00 0.00 46.74 4.79
278 279 2.885644 CCGAAGATGTGGACGGCG 60.886 66.667 4.80 4.80 38.98 6.46
279 280 2.885644 CGAAGATGTGGACGGCGG 60.886 66.667 13.24 0.00 0.00 6.13
280 281 2.577059 GAAGATGTGGACGGCGGA 59.423 61.111 13.24 0.00 0.00 5.54
281 282 1.519455 GAAGATGTGGACGGCGGAG 60.519 63.158 13.24 0.00 0.00 4.63
282 283 2.907897 GAAGATGTGGACGGCGGAGG 62.908 65.000 13.24 0.00 0.00 4.30
283 284 3.458163 GATGTGGACGGCGGAGGA 61.458 66.667 13.24 0.00 0.00 3.71
284 285 3.432051 GATGTGGACGGCGGAGGAG 62.432 68.421 13.24 0.00 0.00 3.69
294 295 4.521062 CGGAGGAGCCTGGCGAAG 62.521 72.222 13.96 0.00 0.00 3.79
302 303 3.474570 CCTGGCGAAGGGGAGGAG 61.475 72.222 0.00 0.00 43.15 3.69
303 304 4.168291 CTGGCGAAGGGGAGGAGC 62.168 72.222 0.00 0.00 0.00 4.70
306 307 4.516195 GCGAAGGGGAGGAGCGAC 62.516 72.222 0.00 0.00 0.00 5.19
307 308 4.194720 CGAAGGGGAGGAGCGACG 62.195 72.222 0.00 0.00 0.00 5.12
308 309 3.839432 GAAGGGGAGGAGCGACGG 61.839 72.222 0.00 0.00 0.00 4.79
309 310 4.377760 AAGGGGAGGAGCGACGGA 62.378 66.667 0.00 0.00 0.00 4.69
310 311 4.824515 AGGGGAGGAGCGACGGAG 62.825 72.222 0.00 0.00 0.00 4.63
312 313 4.816984 GGGAGGAGCGACGGAGGA 62.817 72.222 0.00 0.00 0.00 3.71
313 314 2.754658 GGAGGAGCGACGGAGGAA 60.755 66.667 0.00 0.00 0.00 3.36
314 315 2.776913 GGAGGAGCGACGGAGGAAG 61.777 68.421 0.00 0.00 0.00 3.46
315 316 1.749638 GAGGAGCGACGGAGGAAGA 60.750 63.158 0.00 0.00 0.00 2.87
316 317 1.995646 GAGGAGCGACGGAGGAAGAC 61.996 65.000 0.00 0.00 0.00 3.01
317 318 2.100603 GAGCGACGGAGGAAGACG 59.899 66.667 0.00 0.00 0.00 4.18
318 319 2.359602 AGCGACGGAGGAAGACGA 60.360 61.111 0.00 0.00 0.00 4.20
319 320 2.100603 GCGACGGAGGAAGACGAG 59.899 66.667 0.00 0.00 0.00 4.18
320 321 2.792599 CGACGGAGGAAGACGAGG 59.207 66.667 0.00 0.00 0.00 4.63
321 322 1.744368 CGACGGAGGAAGACGAGGA 60.744 63.158 0.00 0.00 0.00 3.71
322 323 1.707239 CGACGGAGGAAGACGAGGAG 61.707 65.000 0.00 0.00 0.00 3.69
323 324 0.677414 GACGGAGGAAGACGAGGAGT 60.677 60.000 0.00 0.00 0.00 3.85
331 332 3.827898 GACGAGGAGTCCTGGCGG 61.828 72.222 18.90 5.50 43.95 6.13
332 333 4.361971 ACGAGGAGTCCTGGCGGA 62.362 66.667 18.90 0.00 32.43 5.54
333 334 3.522731 CGAGGAGTCCTGGCGGAG 61.523 72.222 18.90 0.00 40.84 4.63
334 335 3.151022 GAGGAGTCCTGGCGGAGG 61.151 72.222 18.90 0.00 40.84 4.30
335 336 4.787280 AGGAGTCCTGGCGGAGGG 62.787 72.222 12.07 0.00 43.06 4.30
336 337 4.779733 GGAGTCCTGGCGGAGGGA 62.780 72.222 0.41 0.00 43.06 4.20
337 338 2.683933 GAGTCCTGGCGGAGGGAA 60.684 66.667 0.00 0.00 43.06 3.97
338 339 2.685380 AGTCCTGGCGGAGGGAAG 60.685 66.667 0.00 0.00 43.06 3.46
339 340 3.787001 GTCCTGGCGGAGGGAAGG 61.787 72.222 0.00 0.00 43.06 3.46
340 341 4.005978 TCCTGGCGGAGGGAAGGA 62.006 66.667 0.00 0.00 43.06 3.36
341 342 3.474570 CCTGGCGGAGGGAAGGAG 61.475 72.222 0.00 0.00 38.36 3.69
342 343 4.168291 CTGGCGGAGGGAAGGAGC 62.168 72.222 0.00 0.00 0.00 4.70
345 346 3.541713 GCGGAGGGAAGGAGCGAT 61.542 66.667 0.00 0.00 0.00 4.58
346 347 2.419198 CGGAGGGAAGGAGCGATG 59.581 66.667 0.00 0.00 0.00 3.84
347 348 2.825264 GGAGGGAAGGAGCGATGG 59.175 66.667 0.00 0.00 0.00 3.51
348 349 1.762460 GGAGGGAAGGAGCGATGGA 60.762 63.158 0.00 0.00 0.00 3.41
349 350 1.745264 GAGGGAAGGAGCGATGGAG 59.255 63.158 0.00 0.00 0.00 3.86
350 351 1.753368 GAGGGAAGGAGCGATGGAGG 61.753 65.000 0.00 0.00 0.00 4.30
351 352 1.762460 GGGAAGGAGCGATGGAGGA 60.762 63.158 0.00 0.00 0.00 3.71
352 353 1.338136 GGGAAGGAGCGATGGAGGAA 61.338 60.000 0.00 0.00 0.00 3.36
353 354 0.105778 GGAAGGAGCGATGGAGGAAG 59.894 60.000 0.00 0.00 0.00 3.46
354 355 1.115467 GAAGGAGCGATGGAGGAAGA 58.885 55.000 0.00 0.00 0.00 2.87
355 356 0.827368 AAGGAGCGATGGAGGAAGAC 59.173 55.000 0.00 0.00 0.00 3.01
356 357 0.324738 AGGAGCGATGGAGGAAGACA 60.325 55.000 0.00 0.00 0.00 3.41
357 358 0.537188 GGAGCGATGGAGGAAGACAA 59.463 55.000 0.00 0.00 0.00 3.18
358 359 1.646189 GAGCGATGGAGGAAGACAAC 58.354 55.000 0.00 0.00 0.00 3.32
359 360 0.108615 AGCGATGGAGGAAGACAACG 60.109 55.000 0.00 0.00 36.21 4.10
360 361 0.108804 GCGATGGAGGAAGACAACGA 60.109 55.000 0.00 0.00 35.29 3.85
361 362 1.630148 CGATGGAGGAAGACAACGAC 58.370 55.000 0.00 0.00 35.29 4.34
362 363 1.736032 CGATGGAGGAAGACAACGACC 60.736 57.143 0.00 0.00 35.29 4.79
363 364 0.613777 ATGGAGGAAGACAACGACCC 59.386 55.000 0.00 0.00 0.00 4.46
364 365 1.080025 GGAGGAAGACAACGACCCG 60.080 63.158 0.00 0.00 0.00 5.28
365 366 1.530013 GGAGGAAGACAACGACCCGA 61.530 60.000 0.00 0.00 0.00 5.14
366 367 0.109226 GAGGAAGACAACGACCCGAG 60.109 60.000 0.00 0.00 0.00 4.63
367 368 1.737008 GGAAGACAACGACCCGAGC 60.737 63.158 0.00 0.00 0.00 5.03
368 369 2.049433 AAGACAACGACCCGAGCG 60.049 61.111 0.00 0.00 0.00 5.03
369 370 2.467946 GAAGACAACGACCCGAGCGA 62.468 60.000 0.00 0.00 0.00 4.93
370 371 1.874345 AAGACAACGACCCGAGCGAT 61.874 55.000 0.00 0.00 0.00 4.58
371 372 1.445582 GACAACGACCCGAGCGATT 60.446 57.895 0.00 0.00 0.00 3.34
372 373 1.005394 ACAACGACCCGAGCGATTT 60.005 52.632 0.00 0.00 0.00 2.17
373 374 1.012486 ACAACGACCCGAGCGATTTC 61.012 55.000 0.00 0.00 0.00 2.17
374 375 1.011968 CAACGACCCGAGCGATTTCA 61.012 55.000 0.00 0.00 0.00 2.69
375 376 0.320073 AACGACCCGAGCGATTTCAA 60.320 50.000 0.00 0.00 0.00 2.69
376 377 0.320073 ACGACCCGAGCGATTTCAAA 60.320 50.000 0.00 0.00 0.00 2.69
377 378 1.006832 CGACCCGAGCGATTTCAAAT 58.993 50.000 0.00 0.00 0.00 2.32
378 379 1.267532 CGACCCGAGCGATTTCAAATG 60.268 52.381 0.00 0.00 0.00 2.32
379 380 1.064060 GACCCGAGCGATTTCAAATGG 59.936 52.381 0.00 0.00 0.00 3.16
380 381 0.381801 CCCGAGCGATTTCAAATGGG 59.618 55.000 0.00 0.00 0.00 4.00
381 382 0.381801 CCGAGCGATTTCAAATGGGG 59.618 55.000 0.00 0.00 0.00 4.96
382 383 0.381801 CGAGCGATTTCAAATGGGGG 59.618 55.000 0.00 0.00 0.00 5.40
443 444 5.358298 AAAACTCAGCGACAATTACTTCC 57.642 39.130 0.00 0.00 0.00 3.46
444 445 3.963428 ACTCAGCGACAATTACTTCCT 57.037 42.857 0.00 0.00 0.00 3.36
445 446 3.851098 ACTCAGCGACAATTACTTCCTC 58.149 45.455 0.00 0.00 0.00 3.71
446 447 3.190874 CTCAGCGACAATTACTTCCTCC 58.809 50.000 0.00 0.00 0.00 4.30
447 448 2.565391 TCAGCGACAATTACTTCCTCCA 59.435 45.455 0.00 0.00 0.00 3.86
448 449 3.197766 TCAGCGACAATTACTTCCTCCAT 59.802 43.478 0.00 0.00 0.00 3.41
449 450 3.557595 CAGCGACAATTACTTCCTCCATC 59.442 47.826 0.00 0.00 0.00 3.51
450 451 3.452627 AGCGACAATTACTTCCTCCATCT 59.547 43.478 0.00 0.00 0.00 2.90
451 452 4.080863 AGCGACAATTACTTCCTCCATCTT 60.081 41.667 0.00 0.00 0.00 2.40
452 453 5.128827 AGCGACAATTACTTCCTCCATCTTA 59.871 40.000 0.00 0.00 0.00 2.10
453 454 5.815740 GCGACAATTACTTCCTCCATCTTAA 59.184 40.000 0.00 0.00 0.00 1.85
454 455 6.315393 GCGACAATTACTTCCTCCATCTTAAA 59.685 38.462 0.00 0.00 0.00 1.52
455 456 7.148306 GCGACAATTACTTCCTCCATCTTAAAA 60.148 37.037 0.00 0.00 0.00 1.52
456 457 8.893727 CGACAATTACTTCCTCCATCTTAAAAT 58.106 33.333 0.00 0.00 0.00 1.82
462 463 9.807921 TTACTTCCTCCATCTTAAAATTCTTGT 57.192 29.630 0.00 0.00 0.00 3.16
463 464 8.341892 ACTTCCTCCATCTTAAAATTCTTGTC 57.658 34.615 0.00 0.00 0.00 3.18
464 465 6.985188 TCCTCCATCTTAAAATTCTTGTCG 57.015 37.500 0.00 0.00 0.00 4.35
465 466 5.880332 TCCTCCATCTTAAAATTCTTGTCGG 59.120 40.000 0.00 0.00 0.00 4.79
466 467 5.880332 CCTCCATCTTAAAATTCTTGTCGGA 59.120 40.000 0.00 0.00 0.00 4.55
467 468 6.037610 CCTCCATCTTAAAATTCTTGTCGGAG 59.962 42.308 0.00 0.00 35.89 4.63
468 469 5.880332 TCCATCTTAAAATTCTTGTCGGAGG 59.120 40.000 0.00 0.00 0.00 4.30
469 470 5.066505 CCATCTTAAAATTCTTGTCGGAGGG 59.933 44.000 0.00 0.00 0.00 4.30
470 471 5.492855 TCTTAAAATTCTTGTCGGAGGGA 57.507 39.130 0.00 0.00 0.00 4.20
471 472 5.488341 TCTTAAAATTCTTGTCGGAGGGAG 58.512 41.667 0.00 0.00 0.00 4.30
472 473 3.790089 AAAATTCTTGTCGGAGGGAGT 57.210 42.857 0.00 0.00 0.00 3.85
473 474 4.903045 AAAATTCTTGTCGGAGGGAGTA 57.097 40.909 0.00 0.00 0.00 2.59
474 475 5.437191 AAAATTCTTGTCGGAGGGAGTAT 57.563 39.130 0.00 0.00 0.00 2.12
475 476 5.437191 AAATTCTTGTCGGAGGGAGTATT 57.563 39.130 0.00 0.00 0.00 1.89
476 477 5.437191 AATTCTTGTCGGAGGGAGTATTT 57.563 39.130 0.00 0.00 0.00 1.40
477 478 4.467198 TTCTTGTCGGAGGGAGTATTTC 57.533 45.455 0.00 0.00 0.00 2.17
478 479 2.426024 TCTTGTCGGAGGGAGTATTTCG 59.574 50.000 0.00 0.00 0.00 3.46
479 480 1.108776 TGTCGGAGGGAGTATTTCGG 58.891 55.000 0.00 0.00 0.00 4.30
480 481 1.109609 GTCGGAGGGAGTATTTCGGT 58.890 55.000 0.00 0.00 0.00 4.69
481 482 2.301346 GTCGGAGGGAGTATTTCGGTA 58.699 52.381 0.00 0.00 0.00 4.02
482 483 2.292845 GTCGGAGGGAGTATTTCGGTAG 59.707 54.545 0.00 0.00 0.00 3.18
483 484 1.612463 CGGAGGGAGTATTTCGGTAGG 59.388 57.143 0.00 0.00 0.00 3.18
484 485 1.969208 GGAGGGAGTATTTCGGTAGGG 59.031 57.143 0.00 0.00 0.00 3.53
485 486 2.425392 GGAGGGAGTATTTCGGTAGGGA 60.425 54.545 0.00 0.00 0.00 4.20
486 487 2.892215 GAGGGAGTATTTCGGTAGGGAG 59.108 54.545 0.00 0.00 0.00 4.30
487 488 1.969208 GGGAGTATTTCGGTAGGGAGG 59.031 57.143 0.00 0.00 0.00 4.30
488 489 2.675583 GGAGTATTTCGGTAGGGAGGT 58.324 52.381 0.00 0.00 0.00 3.85
489 490 3.036819 GGAGTATTTCGGTAGGGAGGTT 58.963 50.000 0.00 0.00 0.00 3.50
490 491 3.181468 GGAGTATTTCGGTAGGGAGGTTG 60.181 52.174 0.00 0.00 0.00 3.77
491 492 3.447950 AGTATTTCGGTAGGGAGGTTGT 58.552 45.455 0.00 0.00 0.00 3.32
492 493 4.613437 AGTATTTCGGTAGGGAGGTTGTA 58.387 43.478 0.00 0.00 0.00 2.41
493 494 5.214293 AGTATTTCGGTAGGGAGGTTGTAT 58.786 41.667 0.00 0.00 0.00 2.29
494 495 5.664457 AGTATTTCGGTAGGGAGGTTGTATT 59.336 40.000 0.00 0.00 0.00 1.89
495 496 4.914177 TTTCGGTAGGGAGGTTGTATTT 57.086 40.909 0.00 0.00 0.00 1.40
496 497 3.899052 TCGGTAGGGAGGTTGTATTTG 57.101 47.619 0.00 0.00 0.00 2.32
497 498 2.502538 TCGGTAGGGAGGTTGTATTTGG 59.497 50.000 0.00 0.00 0.00 3.28
498 499 2.420967 CGGTAGGGAGGTTGTATTTGGG 60.421 54.545 0.00 0.00 0.00 4.12
499 500 2.848071 GGTAGGGAGGTTGTATTTGGGA 59.152 50.000 0.00 0.00 0.00 4.37
500 501 3.267551 GGTAGGGAGGTTGTATTTGGGAA 59.732 47.826 0.00 0.00 0.00 3.97
501 502 3.451402 AGGGAGGTTGTATTTGGGAAC 57.549 47.619 0.00 0.00 0.00 3.62
543 544 2.162809 ACGTGCGAAGGTGAAAACTTTT 59.837 40.909 0.00 0.00 0.00 2.27
550 551 1.557907 GTGAAAACTTTTGGCGCGC 59.442 52.632 25.94 25.94 0.00 6.86
551 552 1.941734 TGAAAACTTTTGGCGCGCG 60.942 52.632 28.44 28.44 0.00 6.86
623 628 2.171448 AGGAATCCCCAATCTCGTCTTG 59.829 50.000 0.00 0.00 37.41 3.02
665 2472 2.591715 CCCAAATCCCTAGCCGCG 60.592 66.667 0.00 0.00 0.00 6.46
725 2544 4.379243 CCTTCCGCCACGAGCTGT 62.379 66.667 0.00 0.00 40.39 4.40
736 2555 4.070552 GAGCTGTCGCCTTCCCGT 62.071 66.667 0.00 0.00 36.60 5.28
853 2672 1.526887 CATACACGATTCGTCCATGCC 59.473 52.381 9.11 0.00 38.32 4.40
857 2676 2.525248 CGATTCGTCCATGCCACGG 61.525 63.158 13.59 0.00 37.85 4.94
898 2720 2.107141 GGAAGGAGATCACCCGCG 59.893 66.667 5.46 0.00 0.00 6.46
899 2721 2.107141 GAAGGAGATCACCCGCGG 59.893 66.667 21.04 21.04 0.00 6.46
900 2722 4.162690 AAGGAGATCACCCGCGGC 62.163 66.667 22.85 5.42 0.00 6.53
943 2765 2.132740 TGCCAGTTCGTTTTGATTGC 57.867 45.000 0.00 0.00 0.00 3.56
1025 2847 2.776913 CCTCTTCTCCGTCTCCCGC 61.777 68.421 0.00 0.00 34.38 6.13
1166 2988 3.804325 CGCATCAACTCCGATACTTTCAT 59.196 43.478 0.00 0.00 0.00 2.57
2259 6200 5.940470 AGCTTCTGTTTAATCCGAAGACAAT 59.060 36.000 17.14 2.58 35.97 2.71
2488 6432 0.677288 ATTGTCCGGAGTTGACGTGA 59.323 50.000 3.06 0.00 35.46 4.35
2531 6475 6.825721 AGAGGGCAATAAGATTACAGTCAAAG 59.174 38.462 0.00 0.00 0.00 2.77
2559 6506 4.212214 GGCGATGAATCAGAACAGTTATCC 59.788 45.833 0.00 0.00 0.00 2.59
2566 6513 4.703645 TCAGAACAGTTATCCTCACTCG 57.296 45.455 0.00 0.00 0.00 4.18
2574 6521 2.625790 GTTATCCTCACTCGGCTGATCT 59.374 50.000 0.00 0.00 0.00 2.75
2650 6597 5.305585 AGAAATAACGTCCAGAAAAGCTCA 58.694 37.500 0.00 0.00 0.00 4.26
2720 6667 5.169295 GTTGGACTTGTGATAGAGGTGTAC 58.831 45.833 0.00 0.00 0.00 2.90
2805 6752 5.949952 TCTGTACTGGCTGAACTATACTTCA 59.050 40.000 0.00 0.00 0.00 3.02
2856 6803 6.275335 AGTTTTGGAATGTTGTGAAGACATG 58.725 36.000 0.00 0.00 37.76 3.21
2868 6815 4.692155 TGTGAAGACATGTGTAGATTGCTG 59.308 41.667 1.15 0.00 0.00 4.41
3005 6960 0.105658 AAGTAGCTCCGCCCCTCATA 60.106 55.000 0.00 0.00 0.00 2.15
3007 6962 1.228894 TAGCTCCGCCCCTCATAGG 60.229 63.158 0.00 0.00 34.30 2.57
3064 7020 3.460857 AGATAACATCTTCGGCTGGTC 57.539 47.619 0.00 0.00 35.76 4.02
3079 7035 5.962031 TCGGCTGGTCCCTATATGTATATTT 59.038 40.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.394080 ATGCTCCTTTCTGCTCCTGC 60.394 55.000 0.00 0.00 40.20 4.85
1 2 1.666054 GATGCTCCTTTCTGCTCCTG 58.334 55.000 0.00 0.00 0.00 3.86
2 3 0.177604 CGATGCTCCTTTCTGCTCCT 59.822 55.000 0.00 0.00 0.00 3.69
4 5 1.569708 CTCGATGCTCCTTTCTGCTC 58.430 55.000 0.00 0.00 0.00 4.26
5 6 0.461693 GCTCGATGCTCCTTTCTGCT 60.462 55.000 0.00 0.00 38.95 4.24
6 7 0.742281 TGCTCGATGCTCCTTTCTGC 60.742 55.000 8.07 0.00 43.37 4.26
7 8 1.288350 CTGCTCGATGCTCCTTTCTG 58.712 55.000 8.07 0.00 43.37 3.02
8 9 0.461693 GCTGCTCGATGCTCCTTTCT 60.462 55.000 8.07 0.00 43.37 2.52
12 13 4.218578 CCGCTGCTCGATGCTCCT 62.219 66.667 0.00 0.00 43.37 3.69
28 29 4.400961 AGCTCAAGGTCAGCCGCC 62.401 66.667 0.00 0.00 37.63 6.13
29 30 2.817396 GAGCTCAAGGTCAGCCGC 60.817 66.667 9.40 0.00 41.81 6.53
30 31 1.153667 GAGAGCTCAAGGTCAGCCG 60.154 63.158 17.77 0.00 44.42 5.52
31 32 0.322975 TTGAGAGCTCAAGGTCAGCC 59.677 55.000 17.77 1.73 43.90 4.85
32 33 3.923354 TTGAGAGCTCAAGGTCAGC 57.077 52.632 17.77 4.07 43.90 4.26
40 41 2.235650 CTCCACTCCAATTGAGAGCTCA 59.764 50.000 17.77 0.00 44.42 4.26
41 42 2.419851 CCTCCACTCCAATTGAGAGCTC 60.420 54.545 18.38 5.27 44.42 4.09
42 43 1.558756 CCTCCACTCCAATTGAGAGCT 59.441 52.381 18.38 0.00 44.42 4.09
43 44 1.556911 TCCTCCACTCCAATTGAGAGC 59.443 52.381 18.38 0.00 44.42 4.09
44 45 3.370315 CCTTCCTCCACTCCAATTGAGAG 60.370 52.174 17.39 17.39 44.42 3.20
45 46 2.573462 CCTTCCTCCACTCCAATTGAGA 59.427 50.000 7.12 1.70 44.42 3.27
47 48 1.004745 GCCTTCCTCCACTCCAATTGA 59.995 52.381 7.12 0.00 0.00 2.57
48 49 1.467920 GCCTTCCTCCACTCCAATTG 58.532 55.000 0.00 0.00 0.00 2.32
49 50 0.035056 CGCCTTCCTCCACTCCAATT 60.035 55.000 0.00 0.00 0.00 2.32
50 51 0.909610 TCGCCTTCCTCCACTCCAAT 60.910 55.000 0.00 0.00 0.00 3.16
51 52 1.535444 TCGCCTTCCTCCACTCCAA 60.535 57.895 0.00 0.00 0.00 3.53
52 53 2.119611 TCGCCTTCCTCCACTCCA 59.880 61.111 0.00 0.00 0.00 3.86
53 54 2.579738 GTCGCCTTCCTCCACTCC 59.420 66.667 0.00 0.00 0.00 3.85
54 55 2.579738 GGTCGCCTTCCTCCACTC 59.420 66.667 0.00 0.00 0.00 3.51
55 56 3.382832 CGGTCGCCTTCCTCCACT 61.383 66.667 0.00 0.00 0.00 4.00
56 57 3.379445 TCGGTCGCCTTCCTCCAC 61.379 66.667 0.00 0.00 0.00 4.02
57 58 3.379445 GTCGGTCGCCTTCCTCCA 61.379 66.667 0.00 0.00 0.00 3.86
58 59 4.493747 CGTCGGTCGCCTTCCTCC 62.494 72.222 0.00 0.00 0.00 4.30
59 60 3.398353 CTCGTCGGTCGCCTTCCTC 62.398 68.421 0.00 0.00 39.67 3.71
60 61 3.441290 CTCGTCGGTCGCCTTCCT 61.441 66.667 0.00 0.00 39.67 3.36
61 62 4.493747 CCTCGTCGGTCGCCTTCC 62.494 72.222 0.00 0.00 39.67 3.46
62 63 4.493747 CCCTCGTCGGTCGCCTTC 62.494 72.222 0.00 0.00 39.67 3.46
64 65 4.816984 ATCCCTCGTCGGTCGCCT 62.817 66.667 0.00 0.00 39.67 5.52
65 66 4.267503 GATCCCTCGTCGGTCGCC 62.268 72.222 0.00 0.00 39.67 5.54
66 67 4.267503 GGATCCCTCGTCGGTCGC 62.268 72.222 0.00 0.00 39.67 5.19
67 68 3.950254 CGGATCCCTCGTCGGTCG 61.950 72.222 6.06 0.00 41.41 4.79
68 69 4.267503 GCGGATCCCTCGTCGGTC 62.268 72.222 6.06 0.00 0.00 4.79
70 71 4.271816 CTGCGGATCCCTCGTCGG 62.272 72.222 6.06 0.00 0.00 4.79
71 72 4.933064 GCTGCGGATCCCTCGTCG 62.933 72.222 6.06 0.00 0.00 5.12
72 73 4.593864 GGCTGCGGATCCCTCGTC 62.594 72.222 6.06 0.00 0.00 4.20
74 75 4.598894 CTGGCTGCGGATCCCTCG 62.599 72.222 6.06 0.00 0.00 4.63
75 76 4.925861 GCTGGCTGCGGATCCCTC 62.926 72.222 6.06 0.00 0.00 4.30
93 94 4.565850 AGCTCCGGATCCTCCCCC 62.566 72.222 3.57 0.00 31.13 5.40
94 95 3.237741 CAGCTCCGGATCCTCCCC 61.238 72.222 3.57 0.00 31.13 4.81
95 96 3.934962 GCAGCTCCGGATCCTCCC 61.935 72.222 3.57 0.00 31.13 4.30
96 97 4.292178 CGCAGCTCCGGATCCTCC 62.292 72.222 3.57 0.00 0.00 4.30
120 121 3.583882 ATTCCCCACCGGTTGCCTG 62.584 63.158 2.97 0.00 0.00 4.85
121 122 3.264845 ATTCCCCACCGGTTGCCT 61.265 61.111 2.97 0.00 0.00 4.75
122 123 3.068064 CATTCCCCACCGGTTGCC 61.068 66.667 2.97 0.00 0.00 4.52
123 124 3.068064 CCATTCCCCACCGGTTGC 61.068 66.667 2.97 0.00 0.00 4.17
124 125 3.068064 GCCATTCCCCACCGGTTG 61.068 66.667 2.97 0.00 0.00 3.77
125 126 4.733542 CGCCATTCCCCACCGGTT 62.734 66.667 2.97 0.00 0.00 4.44
149 150 3.462678 GTGGTCCGGAGCTCCCTC 61.463 72.222 31.97 16.25 37.37 4.30
159 160 4.760047 CTCCCTTGCCGTGGTCCG 62.760 72.222 0.00 0.00 0.00 4.79
168 169 2.110006 GATCGGAGGCTCCCTTGC 59.890 66.667 27.36 10.91 31.76 4.01
169 170 2.419198 CGATCGGAGGCTCCCTTG 59.581 66.667 27.36 13.99 31.76 3.61
170 171 2.042843 ACGATCGGAGGCTCCCTT 60.043 61.111 27.36 15.06 31.76 3.95
171 172 2.835431 CACGATCGGAGGCTCCCT 60.835 66.667 27.36 15.27 36.03 4.20
172 173 3.917760 CCACGATCGGAGGCTCCC 61.918 72.222 27.36 12.82 31.13 4.30
173 174 4.593864 GCCACGATCGGAGGCTCC 62.594 72.222 33.29 24.06 44.92 4.70
177 178 4.227134 CCCTGCCACGATCGGAGG 62.227 72.222 20.98 20.77 0.00 4.30
178 179 2.635229 CTTCCCTGCCACGATCGGAG 62.635 65.000 20.98 11.17 0.00 4.63
179 180 2.682136 TTCCCTGCCACGATCGGA 60.682 61.111 20.98 1.66 0.00 4.55
180 181 2.202932 CTTCCCTGCCACGATCGG 60.203 66.667 20.98 8.32 0.00 4.18
181 182 2.202932 CCTTCCCTGCCACGATCG 60.203 66.667 14.88 14.88 0.00 3.69
182 183 2.190578 CCCTTCCCTGCCACGATC 59.809 66.667 0.00 0.00 0.00 3.69
183 184 4.115199 GCCCTTCCCTGCCACGAT 62.115 66.667 0.00 0.00 0.00 3.73
189 190 3.860930 TTTGGTCGCCCTTCCCTGC 62.861 63.158 0.00 0.00 0.00 4.85
190 191 1.675641 CTTTGGTCGCCCTTCCCTG 60.676 63.158 0.00 0.00 0.00 4.45
191 192 1.842381 CTCTTTGGTCGCCCTTCCCT 61.842 60.000 0.00 0.00 0.00 4.20
192 193 1.377333 CTCTTTGGTCGCCCTTCCC 60.377 63.158 0.00 0.00 0.00 3.97
193 194 1.377333 CCTCTTTGGTCGCCCTTCC 60.377 63.158 0.00 0.00 0.00 3.46
194 195 1.377333 CCCTCTTTGGTCGCCCTTC 60.377 63.158 0.00 0.00 0.00 3.46
195 196 2.757077 CCCTCTTTGGTCGCCCTT 59.243 61.111 0.00 0.00 0.00 3.95
196 197 3.330720 CCCCTCTTTGGTCGCCCT 61.331 66.667 0.00 0.00 0.00 5.19
197 198 2.610532 GATCCCCTCTTTGGTCGCCC 62.611 65.000 0.00 0.00 0.00 6.13
198 199 1.153147 GATCCCCTCTTTGGTCGCC 60.153 63.158 0.00 0.00 0.00 5.54
199 200 1.521681 CGATCCCCTCTTTGGTCGC 60.522 63.158 0.00 0.00 0.00 5.19
200 201 1.144057 CCGATCCCCTCTTTGGTCG 59.856 63.158 0.00 0.00 0.00 4.79
201 202 1.527370 CCCGATCCCCTCTTTGGTC 59.473 63.158 0.00 0.00 0.00 4.02
202 203 2.680370 GCCCGATCCCCTCTTTGGT 61.680 63.158 0.00 0.00 0.00 3.67
203 204 2.193248 GCCCGATCCCCTCTTTGG 59.807 66.667 0.00 0.00 0.00 3.28
204 205 1.147153 GAGCCCGATCCCCTCTTTG 59.853 63.158 0.00 0.00 0.00 2.77
205 206 1.003573 AGAGCCCGATCCCCTCTTT 59.996 57.895 0.00 0.00 32.27 2.52
206 207 1.458588 GAGAGCCCGATCCCCTCTT 60.459 63.158 6.06 0.00 36.16 2.85
207 208 2.200092 GAGAGCCCGATCCCCTCT 59.800 66.667 4.61 4.61 38.58 3.69
208 209 3.299190 CGAGAGCCCGATCCCCTC 61.299 72.222 0.00 0.00 0.00 4.30
209 210 3.153629 ATCGAGAGCCCGATCCCCT 62.154 63.158 0.00 0.00 45.03 4.79
210 211 2.601966 ATCGAGAGCCCGATCCCC 60.602 66.667 0.00 0.00 45.03 4.81
215 216 3.526430 CTCCAATCGAGAGCCCGA 58.474 61.111 0.00 0.00 41.63 5.14
220 221 2.656651 CGCCGCTCCAATCGAGAG 60.657 66.667 0.00 0.00 41.63 3.20
221 222 4.873129 GCGCCGCTCCAATCGAGA 62.873 66.667 0.00 0.00 41.63 4.04
242 243 3.861797 ATACTTCCCCGCCGGCTG 61.862 66.667 26.68 19.17 0.00 4.85
243 244 3.861797 CATACTTCCCCGCCGGCT 61.862 66.667 26.68 6.03 0.00 5.52
245 246 4.929707 GGCATACTTCCCCGCCGG 62.930 72.222 0.00 0.00 34.26 6.13
247 248 3.394635 TTCGGCATACTTCCCCGCC 62.395 63.158 0.00 0.00 41.68 6.13
248 249 1.887707 CTTCGGCATACTTCCCCGC 60.888 63.158 0.00 0.00 41.68 6.13
249 250 0.393077 ATCTTCGGCATACTTCCCCG 59.607 55.000 0.00 0.00 43.21 5.73
250 251 1.141053 ACATCTTCGGCATACTTCCCC 59.859 52.381 0.00 0.00 0.00 4.81
251 252 2.213499 CACATCTTCGGCATACTTCCC 58.787 52.381 0.00 0.00 0.00 3.97
252 253 2.158957 TCCACATCTTCGGCATACTTCC 60.159 50.000 0.00 0.00 0.00 3.46
253 254 2.866762 GTCCACATCTTCGGCATACTTC 59.133 50.000 0.00 0.00 0.00 3.01
254 255 2.738643 CGTCCACATCTTCGGCATACTT 60.739 50.000 0.00 0.00 0.00 2.24
255 256 1.202417 CGTCCACATCTTCGGCATACT 60.202 52.381 0.00 0.00 0.00 2.12
256 257 1.209128 CGTCCACATCTTCGGCATAC 58.791 55.000 0.00 0.00 0.00 2.39
257 258 0.104120 CCGTCCACATCTTCGGCATA 59.896 55.000 0.00 0.00 36.68 3.14
258 259 1.153369 CCGTCCACATCTTCGGCAT 60.153 57.895 0.00 0.00 36.68 4.40
259 260 2.264480 CCGTCCACATCTTCGGCA 59.736 61.111 0.00 0.00 36.68 5.69
261 262 2.885644 CGCCGTCCACATCTTCGG 60.886 66.667 0.00 0.00 44.86 4.30
262 263 2.885644 CCGCCGTCCACATCTTCG 60.886 66.667 0.00 0.00 0.00 3.79
263 264 1.519455 CTCCGCCGTCCACATCTTC 60.519 63.158 0.00 0.00 0.00 2.87
264 265 2.579201 CTCCGCCGTCCACATCTT 59.421 61.111 0.00 0.00 0.00 2.40
265 266 3.461773 CCTCCGCCGTCCACATCT 61.462 66.667 0.00 0.00 0.00 2.90
266 267 3.432051 CTCCTCCGCCGTCCACATC 62.432 68.421 0.00 0.00 0.00 3.06
267 268 3.461773 CTCCTCCGCCGTCCACAT 61.462 66.667 0.00 0.00 0.00 3.21
277 278 4.521062 CTTCGCCAGGCTCCTCCG 62.521 72.222 10.54 0.00 40.77 4.63
278 279 4.168291 CCTTCGCCAGGCTCCTCC 62.168 72.222 10.54 0.00 35.13 4.30
279 280 4.168291 CCCTTCGCCAGGCTCCTC 62.168 72.222 10.54 0.00 42.29 3.71
282 283 4.168291 CTCCCCTTCGCCAGGCTC 62.168 72.222 10.54 0.00 42.29 4.70
285 286 3.474570 CTCCTCCCCTTCGCCAGG 61.475 72.222 0.00 0.00 43.49 4.45
286 287 4.168291 GCTCCTCCCCTTCGCCAG 62.168 72.222 0.00 0.00 0.00 4.85
289 290 4.516195 GTCGCTCCTCCCCTTCGC 62.516 72.222 0.00 0.00 0.00 4.70
290 291 4.194720 CGTCGCTCCTCCCCTTCG 62.195 72.222 0.00 0.00 0.00 3.79
291 292 3.839432 CCGTCGCTCCTCCCCTTC 61.839 72.222 0.00 0.00 0.00 3.46
292 293 4.377760 TCCGTCGCTCCTCCCCTT 62.378 66.667 0.00 0.00 0.00 3.95
293 294 4.824515 CTCCGTCGCTCCTCCCCT 62.825 72.222 0.00 0.00 0.00 4.79
295 296 4.816984 TCCTCCGTCGCTCCTCCC 62.817 72.222 0.00 0.00 0.00 4.30
296 297 2.754658 TTCCTCCGTCGCTCCTCC 60.755 66.667 0.00 0.00 0.00 4.30
297 298 1.749638 TCTTCCTCCGTCGCTCCTC 60.750 63.158 0.00 0.00 0.00 3.71
298 299 2.047443 GTCTTCCTCCGTCGCTCCT 61.047 63.158 0.00 0.00 0.00 3.69
299 300 2.490685 GTCTTCCTCCGTCGCTCC 59.509 66.667 0.00 0.00 0.00 4.70
300 301 2.100603 CGTCTTCCTCCGTCGCTC 59.899 66.667 0.00 0.00 0.00 5.03
301 302 2.359602 TCGTCTTCCTCCGTCGCT 60.360 61.111 0.00 0.00 0.00 4.93
302 303 2.100603 CTCGTCTTCCTCCGTCGC 59.899 66.667 0.00 0.00 0.00 5.19
303 304 1.707239 CTCCTCGTCTTCCTCCGTCG 61.707 65.000 0.00 0.00 0.00 5.12
304 305 0.677414 ACTCCTCGTCTTCCTCCGTC 60.677 60.000 0.00 0.00 0.00 4.79
305 306 0.677414 GACTCCTCGTCTTCCTCCGT 60.677 60.000 0.00 0.00 39.61 4.69
306 307 1.378124 GGACTCCTCGTCTTCCTCCG 61.378 65.000 0.00 0.00 42.44 4.63
307 308 0.033894 AGGACTCCTCGTCTTCCTCC 60.034 60.000 0.00 0.00 42.44 4.30
308 309 1.099689 CAGGACTCCTCGTCTTCCTC 58.900 60.000 0.00 0.00 42.44 3.71
309 310 0.323908 CCAGGACTCCTCGTCTTCCT 60.324 60.000 0.00 0.00 42.44 3.36
310 311 1.950973 GCCAGGACTCCTCGTCTTCC 61.951 65.000 0.00 0.00 42.44 3.46
311 312 1.513622 GCCAGGACTCCTCGTCTTC 59.486 63.158 0.00 0.00 42.44 2.87
312 313 2.344203 CGCCAGGACTCCTCGTCTT 61.344 63.158 0.00 0.00 42.44 3.01
313 314 2.752238 CGCCAGGACTCCTCGTCT 60.752 66.667 0.00 0.00 42.44 4.18
314 315 3.827898 CCGCCAGGACTCCTCGTC 61.828 72.222 0.00 0.00 41.02 4.20
315 316 4.361971 TCCGCCAGGACTCCTCGT 62.362 66.667 0.00 0.00 42.75 4.18
316 317 3.522731 CTCCGCCAGGACTCCTCG 61.523 72.222 0.00 0.00 42.75 4.63
324 325 3.474570 CTCCTTCCCTCCGCCAGG 61.475 72.222 0.00 0.00 43.01 4.45
325 326 4.168291 GCTCCTTCCCTCCGCCAG 62.168 72.222 0.00 0.00 0.00 4.85
328 329 3.541713 ATCGCTCCTTCCCTCCGC 61.542 66.667 0.00 0.00 0.00 5.54
329 330 2.419198 CATCGCTCCTTCCCTCCG 59.581 66.667 0.00 0.00 0.00 4.63
330 331 1.753368 CTCCATCGCTCCTTCCCTCC 61.753 65.000 0.00 0.00 0.00 4.30
331 332 1.745264 CTCCATCGCTCCTTCCCTC 59.255 63.158 0.00 0.00 0.00 4.30
332 333 1.764054 CCTCCATCGCTCCTTCCCT 60.764 63.158 0.00 0.00 0.00 4.20
333 334 1.338136 TTCCTCCATCGCTCCTTCCC 61.338 60.000 0.00 0.00 0.00 3.97
334 335 0.105778 CTTCCTCCATCGCTCCTTCC 59.894 60.000 0.00 0.00 0.00 3.46
335 336 1.115467 TCTTCCTCCATCGCTCCTTC 58.885 55.000 0.00 0.00 0.00 3.46
336 337 0.827368 GTCTTCCTCCATCGCTCCTT 59.173 55.000 0.00 0.00 0.00 3.36
337 338 0.324738 TGTCTTCCTCCATCGCTCCT 60.325 55.000 0.00 0.00 0.00 3.69
338 339 0.537188 TTGTCTTCCTCCATCGCTCC 59.463 55.000 0.00 0.00 0.00 4.70
339 340 1.646189 GTTGTCTTCCTCCATCGCTC 58.354 55.000 0.00 0.00 0.00 5.03
340 341 0.108615 CGTTGTCTTCCTCCATCGCT 60.109 55.000 0.00 0.00 0.00 4.93
341 342 0.108804 TCGTTGTCTTCCTCCATCGC 60.109 55.000 0.00 0.00 0.00 4.58
342 343 1.630148 GTCGTTGTCTTCCTCCATCG 58.370 55.000 0.00 0.00 0.00 3.84
343 344 1.405661 GGGTCGTTGTCTTCCTCCATC 60.406 57.143 0.00 0.00 0.00 3.51
344 345 0.613777 GGGTCGTTGTCTTCCTCCAT 59.386 55.000 0.00 0.00 0.00 3.41
345 346 1.812686 CGGGTCGTTGTCTTCCTCCA 61.813 60.000 0.00 0.00 0.00 3.86
346 347 1.080025 CGGGTCGTTGTCTTCCTCC 60.080 63.158 0.00 0.00 0.00 4.30
347 348 0.109226 CTCGGGTCGTTGTCTTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
348 349 1.965219 CTCGGGTCGTTGTCTTCCT 59.035 57.895 0.00 0.00 0.00 3.36
349 350 1.737008 GCTCGGGTCGTTGTCTTCC 60.737 63.158 0.00 0.00 0.00 3.46
350 351 2.087009 CGCTCGGGTCGTTGTCTTC 61.087 63.158 0.00 0.00 0.00 2.87
351 352 1.874345 ATCGCTCGGGTCGTTGTCTT 61.874 55.000 0.00 0.00 0.00 3.01
352 353 1.874345 AATCGCTCGGGTCGTTGTCT 61.874 55.000 0.00 0.00 0.00 3.41
353 354 1.012486 AAATCGCTCGGGTCGTTGTC 61.012 55.000 0.00 0.00 0.00 3.18
354 355 1.005394 AAATCGCTCGGGTCGTTGT 60.005 52.632 0.00 0.00 0.00 3.32
355 356 1.011968 TGAAATCGCTCGGGTCGTTG 61.012 55.000 0.00 0.00 0.00 4.10
356 357 0.320073 TTGAAATCGCTCGGGTCGTT 60.320 50.000 0.00 0.00 0.00 3.85
357 358 0.320073 TTTGAAATCGCTCGGGTCGT 60.320 50.000 0.00 0.00 0.00 4.34
358 359 1.006832 ATTTGAAATCGCTCGGGTCG 58.993 50.000 0.00 0.00 0.00 4.79
359 360 1.064060 CCATTTGAAATCGCTCGGGTC 59.936 52.381 0.00 0.00 0.00 4.46
360 361 1.094785 CCATTTGAAATCGCTCGGGT 58.905 50.000 0.00 0.00 0.00 5.28
361 362 0.381801 CCCATTTGAAATCGCTCGGG 59.618 55.000 0.00 0.00 0.00 5.14
362 363 0.381801 CCCCATTTGAAATCGCTCGG 59.618 55.000 0.00 0.00 0.00 4.63
363 364 0.381801 CCCCCATTTGAAATCGCTCG 59.618 55.000 0.00 0.00 0.00 5.03
379 380 1.202746 TGAAATTGCAAAACTGCCCCC 60.203 47.619 1.71 0.00 0.00 5.40
380 381 1.872952 GTGAAATTGCAAAACTGCCCC 59.127 47.619 1.71 0.00 0.00 5.80
381 382 2.837498 AGTGAAATTGCAAAACTGCCC 58.163 42.857 1.71 0.00 0.00 5.36
382 383 4.620982 ACTAGTGAAATTGCAAAACTGCC 58.379 39.130 1.71 0.00 0.00 4.85
383 384 6.588348 AAACTAGTGAAATTGCAAAACTGC 57.412 33.333 1.71 0.00 0.00 4.40
420 421 5.531287 AGGAAGTAATTGTCGCTGAGTTTTT 59.469 36.000 0.00 0.00 0.00 1.94
421 422 5.063880 AGGAAGTAATTGTCGCTGAGTTTT 58.936 37.500 0.00 0.00 0.00 2.43
422 423 4.642429 AGGAAGTAATTGTCGCTGAGTTT 58.358 39.130 0.00 0.00 0.00 2.66
423 424 4.246458 GAGGAAGTAATTGTCGCTGAGTT 58.754 43.478 0.00 0.00 0.00 3.01
424 425 3.368531 GGAGGAAGTAATTGTCGCTGAGT 60.369 47.826 0.00 0.00 0.00 3.41
425 426 3.190874 GGAGGAAGTAATTGTCGCTGAG 58.809 50.000 0.00 0.00 0.00 3.35
426 427 2.565391 TGGAGGAAGTAATTGTCGCTGA 59.435 45.455 0.00 0.00 0.00 4.26
427 428 2.972625 TGGAGGAAGTAATTGTCGCTG 58.027 47.619 0.00 0.00 0.00 5.18
428 429 3.452627 AGATGGAGGAAGTAATTGTCGCT 59.547 43.478 0.00 0.00 0.00 4.93
429 430 3.798202 AGATGGAGGAAGTAATTGTCGC 58.202 45.455 0.00 0.00 0.00 5.19
430 431 7.843490 TTTAAGATGGAGGAAGTAATTGTCG 57.157 36.000 0.00 0.00 0.00 4.35
436 437 9.807921 ACAAGAATTTTAAGATGGAGGAAGTAA 57.192 29.630 0.00 0.00 0.00 2.24
437 438 9.449719 GACAAGAATTTTAAGATGGAGGAAGTA 57.550 33.333 0.00 0.00 0.00 2.24
438 439 7.119846 CGACAAGAATTTTAAGATGGAGGAAGT 59.880 37.037 0.00 0.00 0.00 3.01
439 440 7.414540 CCGACAAGAATTTTAAGATGGAGGAAG 60.415 40.741 0.00 0.00 0.00 3.46
440 441 6.374333 CCGACAAGAATTTTAAGATGGAGGAA 59.626 38.462 0.00 0.00 0.00 3.36
441 442 5.880332 CCGACAAGAATTTTAAGATGGAGGA 59.120 40.000 0.00 0.00 0.00 3.71
442 443 5.880332 TCCGACAAGAATTTTAAGATGGAGG 59.120 40.000 0.00 0.00 0.00 4.30
443 444 6.037610 CCTCCGACAAGAATTTTAAGATGGAG 59.962 42.308 0.00 0.00 38.23 3.86
444 445 5.880332 CCTCCGACAAGAATTTTAAGATGGA 59.120 40.000 0.00 0.00 0.00 3.41
445 446 5.066505 CCCTCCGACAAGAATTTTAAGATGG 59.933 44.000 0.00 0.00 0.00 3.51
446 447 5.880332 TCCCTCCGACAAGAATTTTAAGATG 59.120 40.000 0.00 0.00 0.00 2.90
447 448 6.062258 TCCCTCCGACAAGAATTTTAAGAT 57.938 37.500 0.00 0.00 0.00 2.40
448 449 5.012768 ACTCCCTCCGACAAGAATTTTAAGA 59.987 40.000 0.00 0.00 0.00 2.10
449 450 5.246307 ACTCCCTCCGACAAGAATTTTAAG 58.754 41.667 0.00 0.00 0.00 1.85
450 451 5.237236 ACTCCCTCCGACAAGAATTTTAA 57.763 39.130 0.00 0.00 0.00 1.52
451 452 4.903045 ACTCCCTCCGACAAGAATTTTA 57.097 40.909 0.00 0.00 0.00 1.52
452 453 3.790089 ACTCCCTCCGACAAGAATTTT 57.210 42.857 0.00 0.00 0.00 1.82
453 454 5.437191 AATACTCCCTCCGACAAGAATTT 57.563 39.130 0.00 0.00 0.00 1.82
454 455 5.429130 GAAATACTCCCTCCGACAAGAATT 58.571 41.667 0.00 0.00 0.00 2.17
455 456 4.441634 CGAAATACTCCCTCCGACAAGAAT 60.442 45.833 0.00 0.00 0.00 2.40
456 457 3.119245 CGAAATACTCCCTCCGACAAGAA 60.119 47.826 0.00 0.00 0.00 2.52
457 458 2.426024 CGAAATACTCCCTCCGACAAGA 59.574 50.000 0.00 0.00 0.00 3.02
458 459 2.481449 CCGAAATACTCCCTCCGACAAG 60.481 54.545 0.00 0.00 0.00 3.16
459 460 1.479323 CCGAAATACTCCCTCCGACAA 59.521 52.381 0.00 0.00 0.00 3.18
460 461 1.108776 CCGAAATACTCCCTCCGACA 58.891 55.000 0.00 0.00 0.00 4.35
461 462 1.109609 ACCGAAATACTCCCTCCGAC 58.890 55.000 0.00 0.00 0.00 4.79
462 463 2.579873 CTACCGAAATACTCCCTCCGA 58.420 52.381 0.00 0.00 0.00 4.55
463 464 1.612463 CCTACCGAAATACTCCCTCCG 59.388 57.143 0.00 0.00 0.00 4.63
464 465 1.969208 CCCTACCGAAATACTCCCTCC 59.031 57.143 0.00 0.00 0.00 4.30
465 466 2.892215 CTCCCTACCGAAATACTCCCTC 59.108 54.545 0.00 0.00 0.00 4.30
466 467 2.425975 CCTCCCTACCGAAATACTCCCT 60.426 54.545 0.00 0.00 0.00 4.20
467 468 1.969208 CCTCCCTACCGAAATACTCCC 59.031 57.143 0.00 0.00 0.00 4.30
468 469 2.675583 ACCTCCCTACCGAAATACTCC 58.324 52.381 0.00 0.00 0.00 3.85
469 470 3.450096 ACAACCTCCCTACCGAAATACTC 59.550 47.826 0.00 0.00 0.00 2.59
470 471 3.447950 ACAACCTCCCTACCGAAATACT 58.552 45.455 0.00 0.00 0.00 2.12
471 472 3.900966 ACAACCTCCCTACCGAAATAC 57.099 47.619 0.00 0.00 0.00 1.89
472 473 6.350906 CAAATACAACCTCCCTACCGAAATA 58.649 40.000 0.00 0.00 0.00 1.40
473 474 5.190677 CAAATACAACCTCCCTACCGAAAT 58.809 41.667 0.00 0.00 0.00 2.17
474 475 4.566070 CCAAATACAACCTCCCTACCGAAA 60.566 45.833 0.00 0.00 0.00 3.46
475 476 3.054948 CCAAATACAACCTCCCTACCGAA 60.055 47.826 0.00 0.00 0.00 4.30
476 477 2.502538 CCAAATACAACCTCCCTACCGA 59.497 50.000 0.00 0.00 0.00 4.69
477 478 2.420967 CCCAAATACAACCTCCCTACCG 60.421 54.545 0.00 0.00 0.00 4.02
478 479 2.848071 TCCCAAATACAACCTCCCTACC 59.152 50.000 0.00 0.00 0.00 3.18
479 480 4.267536 GTTCCCAAATACAACCTCCCTAC 58.732 47.826 0.00 0.00 0.00 3.18
480 481 3.054948 CGTTCCCAAATACAACCTCCCTA 60.055 47.826 0.00 0.00 0.00 3.53
481 482 2.290705 CGTTCCCAAATACAACCTCCCT 60.291 50.000 0.00 0.00 0.00 4.20
482 483 2.089201 CGTTCCCAAATACAACCTCCC 58.911 52.381 0.00 0.00 0.00 4.30
483 484 2.089201 CCGTTCCCAAATACAACCTCC 58.911 52.381 0.00 0.00 0.00 4.30
484 485 3.007635 CTCCGTTCCCAAATACAACCTC 58.992 50.000 0.00 0.00 0.00 3.85
485 486 2.374170 ACTCCGTTCCCAAATACAACCT 59.626 45.455 0.00 0.00 0.00 3.50
486 487 2.786777 ACTCCGTTCCCAAATACAACC 58.213 47.619 0.00 0.00 0.00 3.77
487 488 4.572909 ACTACTCCGTTCCCAAATACAAC 58.427 43.478 0.00 0.00 0.00 3.32
488 489 4.895668 ACTACTCCGTTCCCAAATACAA 57.104 40.909 0.00 0.00 0.00 2.41
489 490 4.563993 CCAACTACTCCGTTCCCAAATACA 60.564 45.833 0.00 0.00 0.00 2.29
490 491 3.937079 CCAACTACTCCGTTCCCAAATAC 59.063 47.826 0.00 0.00 0.00 1.89
491 492 3.620472 GCCAACTACTCCGTTCCCAAATA 60.620 47.826 0.00 0.00 0.00 1.40
492 493 2.878526 GCCAACTACTCCGTTCCCAAAT 60.879 50.000 0.00 0.00 0.00 2.32
493 494 1.543871 GCCAACTACTCCGTTCCCAAA 60.544 52.381 0.00 0.00 0.00 3.28
494 495 0.035739 GCCAACTACTCCGTTCCCAA 59.964 55.000 0.00 0.00 0.00 4.12
495 496 1.675219 GCCAACTACTCCGTTCCCA 59.325 57.895 0.00 0.00 0.00 4.37
496 497 1.447314 CGCCAACTACTCCGTTCCC 60.447 63.158 0.00 0.00 0.00 3.97
497 498 2.098831 GCGCCAACTACTCCGTTCC 61.099 63.158 0.00 0.00 0.00 3.62
498 499 2.442188 CGCGCCAACTACTCCGTTC 61.442 63.158 0.00 0.00 0.00 3.95
499 500 2.431942 CGCGCCAACTACTCCGTT 60.432 61.111 0.00 0.00 0.00 4.44
500 501 3.338126 CTCGCGCCAACTACTCCGT 62.338 63.158 0.00 0.00 0.00 4.69
501 502 2.579787 CTCGCGCCAACTACTCCG 60.580 66.667 0.00 0.00 0.00 4.63
520 521 0.928451 GTTTTCACCTTCGCACGTGC 60.928 55.000 30.42 30.42 37.78 5.34
522 523 1.375551 AAGTTTTCACCTTCGCACGT 58.624 45.000 0.00 0.00 0.00 4.49
523 524 2.468532 AAAGTTTTCACCTTCGCACG 57.531 45.000 0.00 0.00 0.00 5.34
543 544 4.357947 AGAAGAGAACGCGCGCCA 62.358 61.111 32.58 0.00 0.00 5.69
550 551 1.714460 GCACACGTACAGAAGAGAACG 59.286 52.381 0.00 0.00 40.99 3.95
551 552 2.059541 GGCACACGTACAGAAGAGAAC 58.940 52.381 0.00 0.00 0.00 3.01
603 608 2.565841 CAAGACGAGATTGGGGATTCC 58.434 52.381 0.00 0.00 0.00 3.01
623 628 1.768684 TTGTCTGTCACTGGGAGGGC 61.769 60.000 0.00 0.00 0.00 5.19
812 2631 0.108138 CTAACCCTCAGTTGGAGCGG 60.108 60.000 0.00 0.00 42.62 5.52
853 2672 1.018752 TGGTCGCATTGTGATCCGTG 61.019 55.000 7.96 0.00 0.00 4.94
857 2676 1.959042 ATCCTGGTCGCATTGTGATC 58.041 50.000 2.78 3.13 0.00 2.92
898 2720 3.512516 GAATCTGCGTGCTGGGCC 61.513 66.667 0.00 0.00 0.00 5.80
899 2721 2.747460 TGAATCTGCGTGCTGGGC 60.747 61.111 0.00 0.00 0.00 5.36
900 2722 0.463295 ATCTGAATCTGCGTGCTGGG 60.463 55.000 0.00 0.00 0.00 4.45
943 2765 4.876107 ACTGGTTAAGATACGCCAAGATTG 59.124 41.667 0.00 0.00 0.00 2.67
1166 2988 4.198087 ATCGATGGCCTCCGATGA 57.802 55.556 24.75 7.42 43.00 2.92
1211 3033 0.670546 ATCGGTGTCGTTTGAGGCAG 60.671 55.000 0.00 0.00 37.69 4.85
1942 5865 0.681733 AAGCACGCCTTCTTGAGAGA 59.318 50.000 0.00 0.00 0.00 3.10
2429 6373 7.992033 AGAACTCTGGATAATTCTGAATGAAGG 59.008 37.037 3.22 0.00 38.18 3.46
2488 6432 5.942826 GCCCTCTATTTATTCTAGCAGCAAT 59.057 40.000 0.00 0.00 0.00 3.56
2531 6475 3.002791 TGTTCTGATTCATCGCCAGTTC 58.997 45.455 0.00 0.00 0.00 3.01
2538 6482 6.199908 GTGAGGATAACTGTTCTGATTCATCG 59.800 42.308 0.00 0.00 0.00 3.84
2559 6506 2.228582 CCAGATAGATCAGCCGAGTGAG 59.771 54.545 0.00 0.00 0.00 3.51
2566 6513 1.622811 CTGGGACCAGATAGATCAGCC 59.377 57.143 13.06 0.00 46.30 4.85
2720 6667 7.305474 AGATTGTTTTGCATAGGTTTACTTCG 58.695 34.615 0.00 0.00 0.00 3.79
2805 6752 9.424319 CTACAGAATTACTTGTTGATACACTGT 57.576 33.333 0.00 0.00 36.35 3.55
2838 6785 4.836125 ACACATGTCTTCACAACATTCC 57.164 40.909 0.00 0.00 35.19 3.01
2856 6803 4.701765 ACATCCTCATCAGCAATCTACAC 58.298 43.478 0.00 0.00 0.00 2.90
2868 6815 4.400251 TGGAAAGCAATGAACATCCTCATC 59.600 41.667 0.00 0.00 34.90 2.92
3055 7011 2.984435 TACATATAGGGACCAGCCGA 57.016 50.000 0.00 0.00 37.63 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.