Multiple sequence alignment - TraesCS7D01G214100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G214100 chr7D 100.000 3200 0 0 1 3200 173898310 173901509 0.000000e+00 5910.0
1 TraesCS7D01G214100 chr7A 89.898 1663 99 24 774 2398 175868085 175869716 0.000000e+00 2076.0
2 TraesCS7D01G214100 chr7A 90.338 828 59 12 2388 3200 175872747 175873568 0.000000e+00 1066.0
3 TraesCS7D01G214100 chr7A 96.471 85 3 0 634 718 175867944 175868028 1.200000e-29 141.0
4 TraesCS7D01G214100 chr7B 92.616 948 52 1 1492 2421 138667308 138668255 0.000000e+00 1347.0
5 TraesCS7D01G214100 chr7B 86.957 805 64 19 2410 3200 138669222 138669999 0.000000e+00 867.0
6 TraesCS7D01G214100 chr7B 92.913 127 5 4 409 533 138666420 138666544 7.050000e-42 182.0
7 TraesCS7D01G214100 chr7B 90.909 132 9 3 743 872 138666821 138666951 1.180000e-39 174.0
8 TraesCS7D01G214100 chr7B 91.509 106 6 2 1 103 175246679 175246784 3.330000e-30 143.0
9 TraesCS7D01G214100 chr7B 87.037 108 10 2 1 105 111881897 111882003 5.610000e-23 119.0
10 TraesCS7D01G214100 chr7B 78.182 165 14 9 881 1023 138667145 138667309 5.690000e-13 86.1
11 TraesCS7D01G214100 chr3D 87.442 215 23 4 2468 2678 394193450 394193664 8.870000e-61 244.0
12 TraesCS7D01G214100 chr5D 87.204 211 23 3 2472 2679 380691891 380692100 1.480000e-58 237.0
13 TraesCS7D01G214100 chr5D 88.095 126 8 2 3 125 487411161 487411282 3.330000e-30 143.0
14 TraesCS7D01G214100 chrUn 85.714 203 24 2 2477 2679 290640621 290640424 3.230000e-50 209.0
15 TraesCS7D01G214100 chrUn 85.714 203 24 2 2477 2679 290646346 290646149 3.230000e-50 209.0
16 TraesCS7D01G214100 chrUn 85.714 203 24 2 2477 2679 320335843 320336040 3.230000e-50 209.0
17 TraesCS7D01G214100 chr2D 84.651 215 22 9 2468 2678 86490651 86490858 1.500000e-48 204.0
18 TraesCS7D01G214100 chr1B 85.222 203 21 5 2478 2679 26314823 26315017 1.950000e-47 200.0
19 TraesCS7D01G214100 chr4B 83.254 209 29 5 2472 2679 89454824 89455027 1.520000e-43 187.0
20 TraesCS7D01G214100 chr5A 81.279 219 31 4 2952 3160 691709820 691710038 5.490000e-38 169.0
21 TraesCS7D01G214100 chr2A 92.233 103 5 1 3 102 553049127 553049229 3.330000e-30 143.0
22 TraesCS7D01G214100 chr6D 86.364 132 10 4 1 128 115197604 115197731 1.550000e-28 137.0
23 TraesCS7D01G214100 chr3B 90.526 95 4 3 25 118 267223709 267223799 1.560000e-23 121.0
24 TraesCS7D01G214100 chr3A 86.239 109 8 4 25 132 16690296 16690194 9.380000e-21 111.0
25 TraesCS7D01G214100 chr1A 92.308 78 5 1 25 101 9761604 9761681 3.370000e-20 110.0
26 TraesCS7D01G214100 chr1A 100.000 28 0 0 2968 2995 108900357 108900330 6.000000e-03 52.8
27 TraesCS7D01G214100 chr4A 100.000 28 0 0 3075 3102 27553444 27553417 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G214100 chr7D 173898310 173901509 3199 False 5910.000000 5910 100.000000 1 3200 1 chr7D.!!$F1 3199
1 TraesCS7D01G214100 chr7A 175867944 175873568 5624 False 1094.333333 2076 92.235667 634 3200 3 chr7A.!!$F1 2566
2 TraesCS7D01G214100 chr7B 138666420 138669999 3579 False 531.220000 1347 88.315400 409 3200 5 chr7B.!!$F3 2791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.036952 CCACGTGGCACTCAGATTCT 60.037 55.0 24.02 0.0 0.00 2.40 F
575 577 0.107703 CTCTGCATTTGCCTCCGGTA 60.108 55.0 0.00 0.0 41.18 4.02 F
1320 1603 0.109132 GGATGCTTTGCAACTTCGGG 60.109 55.0 0.00 0.0 43.62 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1292 1575 0.109132 GCAAAGCATCCCGTCAAAGG 60.109 55.0 0.00 0.00 0.00 3.11 R
1392 1675 0.179081 GTATGGTGGCTCCGGAGAAC 60.179 60.0 35.69 28.31 39.52 3.01 R
3117 7451 0.549950 CTCATCCAGGACAAGGCCAT 59.450 55.0 5.01 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.665000 CCCACGTGGCACTCAGAT 59.335 61.111 29.75 0.00 0.00 2.90
18 19 1.003355 CCCACGTGGCACTCAGATT 60.003 57.895 29.75 0.00 0.00 2.40
19 20 1.021390 CCCACGTGGCACTCAGATTC 61.021 60.000 29.75 0.00 0.00 2.52
20 21 0.036952 CCACGTGGCACTCAGATTCT 60.037 55.000 24.02 0.00 0.00 2.40
21 22 1.204704 CCACGTGGCACTCAGATTCTA 59.795 52.381 24.02 0.00 0.00 2.10
22 23 2.353704 CCACGTGGCACTCAGATTCTAA 60.354 50.000 24.02 0.00 0.00 2.10
23 24 2.668457 CACGTGGCACTCAGATTCTAAC 59.332 50.000 16.72 0.00 0.00 2.34
24 25 2.299013 ACGTGGCACTCAGATTCTAACA 59.701 45.455 16.72 0.00 0.00 2.41
25 26 3.055819 ACGTGGCACTCAGATTCTAACAT 60.056 43.478 16.72 0.00 0.00 2.71
26 27 3.935203 CGTGGCACTCAGATTCTAACATT 59.065 43.478 16.72 0.00 0.00 2.71
27 28 4.033358 CGTGGCACTCAGATTCTAACATTC 59.967 45.833 16.72 0.00 0.00 2.67
28 29 5.181748 GTGGCACTCAGATTCTAACATTCT 58.818 41.667 11.13 0.00 0.00 2.40
29 30 5.645497 GTGGCACTCAGATTCTAACATTCTT 59.355 40.000 11.13 0.00 0.00 2.52
30 31 6.150140 GTGGCACTCAGATTCTAACATTCTTT 59.850 38.462 11.13 0.00 0.00 2.52
31 32 7.334421 GTGGCACTCAGATTCTAACATTCTTTA 59.666 37.037 11.13 0.00 0.00 1.85
32 33 7.550551 TGGCACTCAGATTCTAACATTCTTTAG 59.449 37.037 0.00 0.00 0.00 1.85
33 34 7.011857 GGCACTCAGATTCTAACATTCTTTAGG 59.988 40.741 0.00 0.00 31.01 2.69
34 35 7.766278 GCACTCAGATTCTAACATTCTTTAGGA 59.234 37.037 0.00 0.00 31.01 2.94
35 36 9.829507 CACTCAGATTCTAACATTCTTTAGGAT 57.170 33.333 0.00 0.00 30.93 3.24
41 42 9.890352 GATTCTAACATTCTTTAGGATTCATGC 57.110 33.333 0.00 0.00 28.74 4.06
42 43 8.806429 TTCTAACATTCTTTAGGATTCATGCA 57.194 30.769 0.00 0.00 31.01 3.96
43 44 8.806429 TCTAACATTCTTTAGGATTCATGCAA 57.194 30.769 0.00 0.00 31.01 4.08
44 45 9.241919 TCTAACATTCTTTAGGATTCATGCAAA 57.758 29.630 0.00 0.00 31.01 3.68
45 46 9.859427 CTAACATTCTTTAGGATTCATGCAAAA 57.141 29.630 0.00 0.00 0.00 2.44
46 47 8.538409 AACATTCTTTAGGATTCATGCAAAAC 57.462 30.769 0.00 0.00 0.00 2.43
47 48 7.669427 ACATTCTTTAGGATTCATGCAAAACA 58.331 30.769 0.00 0.00 0.00 2.83
48 49 8.149647 ACATTCTTTAGGATTCATGCAAAACAA 58.850 29.630 0.00 0.00 0.00 2.83
49 50 8.991026 CATTCTTTAGGATTCATGCAAAACAAA 58.009 29.630 0.00 0.00 0.00 2.83
50 51 8.954950 TTCTTTAGGATTCATGCAAAACAAAA 57.045 26.923 0.00 0.00 0.00 2.44
51 52 9.558396 TTCTTTAGGATTCATGCAAAACAAAAT 57.442 25.926 0.00 0.00 0.00 1.82
52 53 9.206870 TCTTTAGGATTCATGCAAAACAAAATC 57.793 29.630 0.00 0.00 35.38 2.17
53 54 8.899427 TTTAGGATTCATGCAAAACAAAATCA 57.101 26.923 0.00 0.00 36.74 2.57
54 55 8.899427 TTAGGATTCATGCAAAACAAAATCAA 57.101 26.923 0.00 0.00 36.74 2.57
55 56 7.989416 AGGATTCATGCAAAACAAAATCAAT 57.011 28.000 0.00 0.00 36.74 2.57
56 57 7.812648 AGGATTCATGCAAAACAAAATCAATG 58.187 30.769 0.00 0.00 36.74 2.82
57 58 7.446013 AGGATTCATGCAAAACAAAATCAATGT 59.554 29.630 0.00 0.00 36.74 2.71
58 59 7.535940 GGATTCATGCAAAACAAAATCAATGTG 59.464 33.333 0.00 0.00 36.74 3.21
59 60 6.301687 TCATGCAAAACAAAATCAATGTGG 57.698 33.333 0.00 0.00 0.00 4.17
60 61 6.053650 TCATGCAAAACAAAATCAATGTGGA 58.946 32.000 0.00 0.00 0.00 4.02
61 62 6.711194 TCATGCAAAACAAAATCAATGTGGAT 59.289 30.769 0.00 0.00 0.00 3.41
62 63 6.542574 TGCAAAACAAAATCAATGTGGATC 57.457 33.333 0.00 0.00 0.00 3.36
63 64 6.053650 TGCAAAACAAAATCAATGTGGATCA 58.946 32.000 0.00 0.00 0.00 2.92
64 65 6.541278 TGCAAAACAAAATCAATGTGGATCAA 59.459 30.769 0.00 0.00 0.00 2.57
65 66 7.073265 GCAAAACAAAATCAATGTGGATCAAG 58.927 34.615 0.00 0.00 0.00 3.02
66 67 7.577979 CAAAACAAAATCAATGTGGATCAAGG 58.422 34.615 0.00 0.00 0.00 3.61
67 68 4.824289 ACAAAATCAATGTGGATCAAGGC 58.176 39.130 0.00 0.00 0.00 4.35
68 69 3.788333 AAATCAATGTGGATCAAGGCG 57.212 42.857 0.00 0.00 0.00 5.52
69 70 2.425143 ATCAATGTGGATCAAGGCGT 57.575 45.000 0.00 0.00 0.00 5.68
70 71 1.452110 TCAATGTGGATCAAGGCGTG 58.548 50.000 0.00 0.00 0.00 5.34
71 72 1.167851 CAATGTGGATCAAGGCGTGT 58.832 50.000 0.00 0.00 0.00 4.49
72 73 1.135603 CAATGTGGATCAAGGCGTGTG 60.136 52.381 0.00 0.00 0.00 3.82
73 74 0.677731 ATGTGGATCAAGGCGTGTGG 60.678 55.000 0.00 0.00 0.00 4.17
74 75 2.040544 GTGGATCAAGGCGTGTGGG 61.041 63.158 0.00 0.00 0.00 4.61
75 76 3.134127 GGATCAAGGCGTGTGGGC 61.134 66.667 0.00 0.00 42.69 5.36
76 77 2.359850 GATCAAGGCGTGTGGGCA 60.360 61.111 0.00 0.00 45.36 5.36
77 78 1.971167 GATCAAGGCGTGTGGGCAA 60.971 57.895 0.00 0.00 45.36 4.52
78 79 1.304381 ATCAAGGCGTGTGGGCAAT 60.304 52.632 0.00 0.00 45.36 3.56
79 80 1.597797 ATCAAGGCGTGTGGGCAATG 61.598 55.000 0.00 0.00 45.36 2.82
80 81 2.203480 AAGGCGTGTGGGCAATGT 60.203 55.556 0.00 0.00 45.36 2.71
81 82 2.563798 AAGGCGTGTGGGCAATGTG 61.564 57.895 0.00 0.00 45.36 3.21
82 83 4.722855 GGCGTGTGGGCAATGTGC 62.723 66.667 0.00 0.00 44.08 4.57
92 93 2.915775 GCAATGTGCAAACATGCCA 58.084 47.368 5.37 0.00 44.26 4.92
93 94 0.513820 GCAATGTGCAAACATGCCAC 59.486 50.000 5.37 0.00 44.26 5.01
94 95 1.867166 CAATGTGCAAACATGCCACA 58.133 45.000 10.26 10.26 33.19 4.17
95 96 1.527736 CAATGTGCAAACATGCCACAC 59.472 47.619 10.12 6.54 32.14 3.82
96 97 0.318869 ATGTGCAAACATGCCACACG 60.319 50.000 10.12 0.00 33.96 4.49
97 98 1.065600 GTGCAAACATGCCACACGT 59.934 52.632 0.00 0.00 0.00 4.49
98 99 1.065436 TGCAAACATGCCACACGTG 59.935 52.632 15.48 15.48 41.41 4.49
111 112 3.548484 ACGTGTGGGTGGGCGTTA 61.548 61.111 0.00 0.00 33.54 3.18
112 113 2.046700 CGTGTGGGTGGGCGTTAT 60.047 61.111 0.00 0.00 0.00 1.89
113 114 2.104253 CGTGTGGGTGGGCGTTATC 61.104 63.158 0.00 0.00 0.00 1.75
114 115 1.003112 GTGTGGGTGGGCGTTATCA 60.003 57.895 0.00 0.00 0.00 2.15
115 116 0.393808 GTGTGGGTGGGCGTTATCAT 60.394 55.000 0.00 0.00 0.00 2.45
116 117 0.329931 TGTGGGTGGGCGTTATCATT 59.670 50.000 0.00 0.00 0.00 2.57
117 118 1.272203 TGTGGGTGGGCGTTATCATTT 60.272 47.619 0.00 0.00 0.00 2.32
118 119 1.822371 GTGGGTGGGCGTTATCATTTT 59.178 47.619 0.00 0.00 0.00 1.82
119 120 1.821753 TGGGTGGGCGTTATCATTTTG 59.178 47.619 0.00 0.00 0.00 2.44
120 121 1.822371 GGGTGGGCGTTATCATTTTGT 59.178 47.619 0.00 0.00 0.00 2.83
121 122 2.232696 GGGTGGGCGTTATCATTTTGTT 59.767 45.455 0.00 0.00 0.00 2.83
122 123 3.306433 GGGTGGGCGTTATCATTTTGTTT 60.306 43.478 0.00 0.00 0.00 2.83
123 124 4.082136 GGGTGGGCGTTATCATTTTGTTTA 60.082 41.667 0.00 0.00 0.00 2.01
124 125 5.394773 GGGTGGGCGTTATCATTTTGTTTAT 60.395 40.000 0.00 0.00 0.00 1.40
125 126 6.183360 GGGTGGGCGTTATCATTTTGTTTATA 60.183 38.462 0.00 0.00 0.00 0.98
126 127 7.430441 GGTGGGCGTTATCATTTTGTTTATAT 58.570 34.615 0.00 0.00 0.00 0.86
127 128 8.569641 GGTGGGCGTTATCATTTTGTTTATATA 58.430 33.333 0.00 0.00 0.00 0.86
128 129 9.953697 GTGGGCGTTATCATTTTGTTTATATAA 57.046 29.630 0.00 0.00 0.00 0.98
175 176 8.649973 AAAAGTTTACCGTGCATTAAAATTGA 57.350 26.923 10.13 0.00 28.79 2.57
176 177 8.825667 AAAGTTTACCGTGCATTAAAATTGAT 57.174 26.923 10.13 0.00 28.79 2.57
177 178 8.825667 AAGTTTACCGTGCATTAAAATTGATT 57.174 26.923 9.12 0.00 27.53 2.57
178 179 8.460831 AGTTTACCGTGCATTAAAATTGATTC 57.539 30.769 0.00 0.00 0.00 2.52
179 180 8.085296 AGTTTACCGTGCATTAAAATTGATTCA 58.915 29.630 0.00 0.00 0.00 2.57
180 181 8.372521 GTTTACCGTGCATTAAAATTGATTCAG 58.627 33.333 0.00 0.00 0.00 3.02
181 182 4.864247 ACCGTGCATTAAAATTGATTCAGC 59.136 37.500 0.00 0.00 0.00 4.26
182 183 4.027458 CCGTGCATTAAAATTGATTCAGCG 60.027 41.667 0.00 0.00 0.00 5.18
183 184 4.558470 CGTGCATTAAAATTGATTCAGCGT 59.442 37.500 0.00 0.00 0.00 5.07
184 185 5.497439 CGTGCATTAAAATTGATTCAGCGTG 60.497 40.000 0.00 0.00 0.00 5.34
185 186 5.345741 GTGCATTAAAATTGATTCAGCGTGT 59.654 36.000 0.00 0.00 0.00 4.49
186 187 6.526325 GTGCATTAAAATTGATTCAGCGTGTA 59.474 34.615 0.00 0.00 0.00 2.90
187 188 7.220683 GTGCATTAAAATTGATTCAGCGTGTAT 59.779 33.333 0.00 0.00 0.00 2.29
188 189 7.758980 TGCATTAAAATTGATTCAGCGTGTATT 59.241 29.630 0.00 0.00 0.00 1.89
189 190 8.261908 GCATTAAAATTGATTCAGCGTGTATTC 58.738 33.333 0.00 0.00 0.00 1.75
190 191 9.288124 CATTAAAATTGATTCAGCGTGTATTCA 57.712 29.630 0.00 0.00 0.00 2.57
191 192 9.853555 ATTAAAATTGATTCAGCGTGTATTCAA 57.146 25.926 0.00 0.00 0.00 2.69
192 193 9.684448 TTAAAATTGATTCAGCGTGTATTCAAA 57.316 25.926 0.00 0.00 0.00 2.69
193 194 7.566858 AAATTGATTCAGCGTGTATTCAAAC 57.433 32.000 0.00 0.00 0.00 2.93
194 195 5.681337 TTGATTCAGCGTGTATTCAAACA 57.319 34.783 0.00 0.00 0.00 2.83
195 196 5.681337 TGATTCAGCGTGTATTCAAACAA 57.319 34.783 0.00 0.00 0.00 2.83
196 197 6.066054 TGATTCAGCGTGTATTCAAACAAA 57.934 33.333 0.00 0.00 0.00 2.83
197 198 6.676950 TGATTCAGCGTGTATTCAAACAAAT 58.323 32.000 0.00 0.00 0.00 2.32
198 199 7.811653 TGATTCAGCGTGTATTCAAACAAATA 58.188 30.769 0.00 0.00 0.00 1.40
199 200 8.458052 TGATTCAGCGTGTATTCAAACAAATAT 58.542 29.630 0.00 0.00 0.00 1.28
200 201 9.289303 GATTCAGCGTGTATTCAAACAAATATT 57.711 29.630 0.00 0.00 0.00 1.28
201 202 8.667987 TTCAGCGTGTATTCAAACAAATATTC 57.332 30.769 0.00 0.00 0.00 1.75
202 203 7.811653 TCAGCGTGTATTCAAACAAATATTCA 58.188 30.769 0.00 0.00 0.00 2.57
203 204 8.458052 TCAGCGTGTATTCAAACAAATATTCAT 58.542 29.630 0.00 0.00 0.00 2.57
204 205 8.736742 CAGCGTGTATTCAAACAAATATTCATC 58.263 33.333 0.00 0.00 0.00 2.92
205 206 8.458052 AGCGTGTATTCAAACAAATATTCATCA 58.542 29.630 0.00 0.00 0.00 3.07
206 207 9.236691 GCGTGTATTCAAACAAATATTCATCAT 57.763 29.630 0.00 0.00 0.00 2.45
280 281 7.306205 ACAAAAATTGTTCAGTGTGGATTTG 57.694 32.000 0.00 0.00 42.22 2.32
281 282 7.102346 ACAAAAATTGTTCAGTGTGGATTTGA 58.898 30.769 0.00 0.00 42.22 2.69
282 283 7.605691 ACAAAAATTGTTCAGTGTGGATTTGAA 59.394 29.630 0.00 0.00 42.22 2.69
283 284 8.449397 CAAAAATTGTTCAGTGTGGATTTGAAA 58.551 29.630 0.00 0.00 33.10 2.69
284 285 8.558973 AAAATTGTTCAGTGTGGATTTGAAAA 57.441 26.923 0.00 0.00 33.10 2.29
285 286 8.558973 AAATTGTTCAGTGTGGATTTGAAAAA 57.441 26.923 0.00 0.00 33.81 1.94
304 305 5.461032 AAAAATGTTCACCGGATGCTAAA 57.539 34.783 9.46 0.00 0.00 1.85
305 306 5.461032 AAAATGTTCACCGGATGCTAAAA 57.539 34.783 9.46 0.00 0.00 1.52
306 307 5.461032 AAATGTTCACCGGATGCTAAAAA 57.539 34.783 9.46 0.00 0.00 1.94
307 308 4.701956 ATGTTCACCGGATGCTAAAAAG 57.298 40.909 9.46 0.00 0.00 2.27
308 309 3.745799 TGTTCACCGGATGCTAAAAAGA 58.254 40.909 9.46 0.00 0.00 2.52
309 310 3.751175 TGTTCACCGGATGCTAAAAAGAG 59.249 43.478 9.46 0.00 0.00 2.85
310 311 3.695830 TCACCGGATGCTAAAAAGAGT 57.304 42.857 9.46 0.00 0.00 3.24
311 312 4.015872 TCACCGGATGCTAAAAAGAGTT 57.984 40.909 9.46 0.00 0.00 3.01
312 313 4.000988 TCACCGGATGCTAAAAAGAGTTC 58.999 43.478 9.46 0.00 0.00 3.01
313 314 3.751175 CACCGGATGCTAAAAAGAGTTCA 59.249 43.478 9.46 0.00 0.00 3.18
314 315 4.003648 ACCGGATGCTAAAAAGAGTTCAG 58.996 43.478 9.46 0.00 0.00 3.02
315 316 3.181506 CCGGATGCTAAAAAGAGTTCAGC 60.182 47.826 0.00 0.00 0.00 4.26
316 317 3.484229 CGGATGCTAAAAAGAGTTCAGCG 60.484 47.826 0.00 0.00 34.96 5.18
317 318 3.437049 GGATGCTAAAAAGAGTTCAGCGT 59.563 43.478 0.00 0.00 34.96 5.07
318 319 3.878086 TGCTAAAAAGAGTTCAGCGTG 57.122 42.857 0.00 0.00 34.96 5.34
319 320 3.202906 TGCTAAAAAGAGTTCAGCGTGT 58.797 40.909 0.00 0.00 34.96 4.49
320 321 4.373527 TGCTAAAAAGAGTTCAGCGTGTA 58.626 39.130 0.00 0.00 34.96 2.90
321 322 4.994852 TGCTAAAAAGAGTTCAGCGTGTAT 59.005 37.500 0.00 0.00 34.96 2.29
322 323 5.468746 TGCTAAAAAGAGTTCAGCGTGTATT 59.531 36.000 0.00 0.00 34.96 1.89
323 324 6.017440 TGCTAAAAAGAGTTCAGCGTGTATTT 60.017 34.615 0.00 0.00 34.96 1.40
324 325 6.303259 GCTAAAAAGAGTTCAGCGTGTATTTG 59.697 38.462 0.00 0.00 0.00 2.32
325 326 4.749245 AAAGAGTTCAGCGTGTATTTGG 57.251 40.909 0.00 0.00 0.00 3.28
326 327 3.678056 AGAGTTCAGCGTGTATTTGGA 57.322 42.857 0.00 0.00 0.00 3.53
327 328 4.002906 AGAGTTCAGCGTGTATTTGGAA 57.997 40.909 0.00 0.00 0.00 3.53
328 329 4.385825 AGAGTTCAGCGTGTATTTGGAAA 58.614 39.130 0.00 0.00 0.00 3.13
329 330 4.819630 AGAGTTCAGCGTGTATTTGGAAAA 59.180 37.500 0.00 0.00 0.00 2.29
330 331 4.855531 AGTTCAGCGTGTATTTGGAAAAC 58.144 39.130 0.00 0.00 0.00 2.43
331 332 3.529634 TCAGCGTGTATTTGGAAAACG 57.470 42.857 0.00 0.00 37.32 3.60
332 333 2.873472 TCAGCGTGTATTTGGAAAACGT 59.127 40.909 0.00 0.00 36.65 3.99
333 334 2.970609 CAGCGTGTATTTGGAAAACGTG 59.029 45.455 0.00 0.00 36.65 4.49
334 335 2.614983 AGCGTGTATTTGGAAAACGTGT 59.385 40.909 0.00 0.00 36.65 4.49
335 336 2.717011 GCGTGTATTTGGAAAACGTGTG 59.283 45.455 0.00 0.00 36.65 3.82
336 337 2.717011 CGTGTATTTGGAAAACGTGTGC 59.283 45.455 0.00 0.00 0.00 4.57
337 338 3.696898 GTGTATTTGGAAAACGTGTGCA 58.303 40.909 0.00 0.00 0.00 4.57
338 339 4.295051 GTGTATTTGGAAAACGTGTGCAT 58.705 39.130 0.00 0.00 0.00 3.96
339 340 4.381566 GTGTATTTGGAAAACGTGTGCATC 59.618 41.667 0.00 0.00 0.00 3.91
340 341 2.112475 TTTGGAAAACGTGTGCATCG 57.888 45.000 11.60 11.60 0.00 3.84
341 342 0.309302 TTGGAAAACGTGTGCATCGG 59.691 50.000 16.17 0.01 0.00 4.18
342 343 1.209127 GGAAAACGTGTGCATCGGG 59.791 57.895 16.17 0.00 0.00 5.14
343 344 1.231958 GGAAAACGTGTGCATCGGGA 61.232 55.000 16.17 0.00 0.00 5.14
344 345 0.802494 GAAAACGTGTGCATCGGGAT 59.198 50.000 16.17 4.20 0.00 3.85
345 346 2.004017 GAAAACGTGTGCATCGGGATA 58.996 47.619 16.17 0.00 0.00 2.59
346 347 1.651987 AAACGTGTGCATCGGGATAG 58.348 50.000 16.17 0.00 0.00 2.08
347 348 0.810031 AACGTGTGCATCGGGATAGC 60.810 55.000 16.17 0.00 0.00 2.97
348 349 2.302952 CGTGTGCATCGGGATAGCG 61.303 63.158 0.00 0.00 0.00 4.26
349 350 1.067416 GTGTGCATCGGGATAGCGA 59.933 57.895 0.00 0.00 0.00 4.93
350 351 1.067416 TGTGCATCGGGATAGCGAC 59.933 57.895 0.00 0.00 0.00 5.19
351 352 2.016704 GTGCATCGGGATAGCGACG 61.017 63.158 0.00 0.00 0.00 5.12
352 353 3.106407 GCATCGGGATAGCGACGC 61.106 66.667 13.03 13.03 0.00 5.19
353 354 2.801162 CATCGGGATAGCGACGCG 60.801 66.667 15.18 3.53 43.17 6.01
354 355 3.285215 ATCGGGATAGCGACGCGT 61.285 61.111 13.85 13.85 42.58 6.01
355 356 3.538028 ATCGGGATAGCGACGCGTG 62.538 63.158 20.70 10.73 42.58 5.34
356 357 4.246206 CGGGATAGCGACGCGTGA 62.246 66.667 20.70 4.27 38.51 4.35
357 358 2.335369 GGGATAGCGACGCGTGAT 59.665 61.111 20.70 10.86 0.00 3.06
358 359 1.299926 GGGATAGCGACGCGTGATT 60.300 57.895 20.70 3.45 0.00 2.57
359 360 0.874607 GGGATAGCGACGCGTGATTT 60.875 55.000 20.70 2.69 0.00 2.17
360 361 0.928229 GGATAGCGACGCGTGATTTT 59.072 50.000 20.70 0.00 0.00 1.82
361 362 1.326548 GGATAGCGACGCGTGATTTTT 59.673 47.619 20.70 0.00 0.00 1.94
362 363 2.354196 GATAGCGACGCGTGATTTTTG 58.646 47.619 20.70 0.00 0.00 2.44
363 364 0.179235 TAGCGACGCGTGATTTTTGC 60.179 50.000 20.70 6.33 0.00 3.68
364 365 1.724234 GCGACGCGTGATTTTTGCA 60.724 52.632 20.70 0.00 0.00 4.08
365 366 1.919239 GCGACGCGTGATTTTTGCAC 61.919 55.000 20.70 0.00 0.00 4.57
371 372 3.568093 GTGATTTTTGCACGCTGGT 57.432 47.368 0.00 0.00 0.00 4.00
372 373 2.697431 GTGATTTTTGCACGCTGGTA 57.303 45.000 0.00 0.00 0.00 3.25
373 374 2.584791 GTGATTTTTGCACGCTGGTAG 58.415 47.619 0.00 0.00 0.00 3.18
374 375 1.068610 TGATTTTTGCACGCTGGTAGC 60.069 47.619 0.00 0.00 38.02 3.58
375 376 0.958091 ATTTTTGCACGCTGGTAGCA 59.042 45.000 1.45 0.00 42.58 3.49
376 377 0.958091 TTTTTGCACGCTGGTAGCAT 59.042 45.000 0.00 0.00 42.58 3.79
377 378 1.814793 TTTTGCACGCTGGTAGCATA 58.185 45.000 0.00 0.00 42.58 3.14
378 379 1.368641 TTTGCACGCTGGTAGCATAG 58.631 50.000 0.00 0.00 42.58 2.23
379 380 0.461870 TTGCACGCTGGTAGCATAGG 60.462 55.000 0.00 0.00 42.58 2.57
380 381 1.595382 GCACGCTGGTAGCATAGGG 60.595 63.158 0.00 0.00 42.58 3.53
381 382 1.823295 CACGCTGGTAGCATAGGGT 59.177 57.895 0.00 0.00 42.58 4.34
382 383 0.178068 CACGCTGGTAGCATAGGGTT 59.822 55.000 0.00 0.00 42.58 4.11
383 384 0.909623 ACGCTGGTAGCATAGGGTTT 59.090 50.000 0.00 0.00 42.58 3.27
384 385 1.134491 ACGCTGGTAGCATAGGGTTTC 60.134 52.381 0.00 0.00 42.58 2.78
385 386 1.810412 CGCTGGTAGCATAGGGTTTCC 60.810 57.143 0.00 0.00 42.58 3.13
386 387 1.477014 GCTGGTAGCATAGGGTTTCCC 60.477 57.143 0.00 0.00 42.18 3.97
398 399 4.629523 TTTCCCGGACGCGGCTTT 62.630 61.111 13.91 0.00 0.00 3.51
411 412 2.044551 GCTTTGCCTCCTCCCTGG 60.045 66.667 0.00 0.00 37.10 4.45
436 437 4.918201 CCGATCCTTGCTCCCGCC 62.918 72.222 0.00 0.00 34.43 6.13
437 438 3.854669 CGATCCTTGCTCCCGCCT 61.855 66.667 0.00 0.00 34.43 5.52
438 439 2.110006 GATCCTTGCTCCCGCCTC 59.890 66.667 0.00 0.00 34.43 4.70
460 462 3.840763 CGTTCGTTTTGCATCTAAAGCTC 59.159 43.478 0.00 0.00 0.00 4.09
467 469 5.756195 TTTGCATCTAAAGCTCGCATTAT 57.244 34.783 0.00 0.00 31.67 1.28
468 470 5.756195 TTGCATCTAAAGCTCGCATTATT 57.244 34.783 0.00 0.00 31.67 1.40
565 567 2.034879 CACGGCGTCCTCTGCATTT 61.035 57.895 10.85 0.00 0.00 2.32
566 568 2.034879 ACGGCGTCCTCTGCATTTG 61.035 57.895 6.77 0.00 0.00 2.32
567 569 2.486966 GGCGTCCTCTGCATTTGC 59.513 61.111 0.00 0.00 42.50 3.68
568 570 2.486966 GCGTCCTCTGCATTTGCC 59.513 61.111 0.00 0.00 41.18 4.52
569 571 2.042831 GCGTCCTCTGCATTTGCCT 61.043 57.895 0.00 0.00 41.18 4.75
570 572 1.986575 GCGTCCTCTGCATTTGCCTC 61.987 60.000 0.00 0.00 41.18 4.70
571 573 1.372087 CGTCCTCTGCATTTGCCTCC 61.372 60.000 0.00 0.00 41.18 4.30
572 574 1.078214 TCCTCTGCATTTGCCTCCG 60.078 57.895 0.00 0.00 41.18 4.63
573 575 2.117156 CCTCTGCATTTGCCTCCGG 61.117 63.158 0.00 0.00 41.18 5.14
574 576 1.377725 CTCTGCATTTGCCTCCGGT 60.378 57.895 0.00 0.00 41.18 5.28
575 577 0.107703 CTCTGCATTTGCCTCCGGTA 60.108 55.000 0.00 0.00 41.18 4.02
576 578 0.107703 TCTGCATTTGCCTCCGGTAG 60.108 55.000 0.00 0.00 41.18 3.18
578 580 0.326595 TGCATTTGCCTCCGGTAGAA 59.673 50.000 0.00 0.00 41.18 2.10
579 581 1.271652 TGCATTTGCCTCCGGTAGAAA 60.272 47.619 0.00 0.00 41.18 2.52
580 582 1.401905 GCATTTGCCTCCGGTAGAAAG 59.598 52.381 0.00 0.00 34.31 2.62
581 583 1.401905 CATTTGCCTCCGGTAGAAAGC 59.598 52.381 0.00 0.00 0.00 3.51
582 584 0.672401 TTTGCCTCCGGTAGAAAGCG 60.672 55.000 0.00 0.00 46.00 4.68
583 585 2.890961 GCCTCCGGTAGAAAGCGC 60.891 66.667 0.00 0.00 45.10 5.92
584 586 2.202892 CCTCCGGTAGAAAGCGCC 60.203 66.667 2.29 0.00 45.10 6.53
586 588 3.735037 CTCCGGTAGAAAGCGCCCC 62.735 68.421 2.29 0.00 45.10 5.80
587 589 3.782443 CCGGTAGAAAGCGCCCCT 61.782 66.667 2.29 0.66 45.10 4.79
588 590 2.511600 CGGTAGAAAGCGCCCCTG 60.512 66.667 2.29 0.00 40.09 4.45
589 591 2.124695 GGTAGAAAGCGCCCCTGG 60.125 66.667 2.29 0.00 0.00 4.45
590 592 2.824489 GTAGAAAGCGCCCCTGGC 60.824 66.667 2.29 0.00 46.75 4.85
602 604 3.900892 CCTGGCCGACGCGTAGAT 61.901 66.667 21.43 0.00 35.02 1.98
603 605 2.655364 CTGGCCGACGCGTAGATG 60.655 66.667 21.43 6.09 35.02 2.90
605 607 2.654404 GGCCGACGCGTAGATGTC 60.654 66.667 21.43 2.49 35.02 3.06
607 609 1.515519 GCCGACGCGTAGATGTCAA 60.516 57.895 21.43 0.00 34.77 3.18
608 610 1.472276 GCCGACGCGTAGATGTCAAG 61.472 60.000 21.43 3.08 34.77 3.02
609 611 1.472276 CCGACGCGTAGATGTCAAGC 61.472 60.000 21.43 0.00 34.77 4.01
611 613 0.917259 GACGCGTAGATGTCAAGCTG 59.083 55.000 13.97 0.00 35.11 4.24
614 616 1.756375 GCGTAGATGTCAAGCTGCGG 61.756 60.000 14.84 0.00 46.27 5.69
615 617 1.148157 CGTAGATGTCAAGCTGCGGG 61.148 60.000 8.13 0.00 43.10 6.13
616 618 0.811616 GTAGATGTCAAGCTGCGGGG 60.812 60.000 0.00 0.00 0.00 5.73
618 620 2.045926 ATGTCAAGCTGCGGGGAC 60.046 61.111 12.33 12.33 0.00 4.46
619 621 2.527951 GATGTCAAGCTGCGGGGACT 62.528 60.000 17.53 7.53 0.00 3.85
620 622 2.032681 GTCAAGCTGCGGGGACTT 59.967 61.111 12.07 0.00 0.00 3.01
621 623 2.035442 GTCAAGCTGCGGGGACTTC 61.035 63.158 12.07 0.00 0.00 3.01
622 624 2.747855 CAAGCTGCGGGGACTTCC 60.748 66.667 0.00 0.00 0.00 3.46
623 625 2.930562 AAGCTGCGGGGACTTCCT 60.931 61.111 0.00 0.00 35.95 3.36
624 626 3.259633 AAGCTGCGGGGACTTCCTG 62.260 63.158 0.00 0.00 44.90 3.86
626 628 2.266055 CTGCGGGGACTTCCTGAC 59.734 66.667 0.00 0.00 44.90 3.51
627 629 3.316573 CTGCGGGGACTTCCTGACC 62.317 68.421 0.00 0.00 44.90 4.02
629 631 3.771160 CGGGGACTTCCTGACCGG 61.771 72.222 0.00 0.00 44.90 5.28
630 632 4.097361 GGGGACTTCCTGACCGGC 62.097 72.222 0.00 0.00 35.95 6.13
631 633 4.452733 GGGACTTCCTGACCGGCG 62.453 72.222 0.00 0.00 35.95 6.46
719 721 4.497006 GCGAATAGAGTAGCGGACAAAGTA 60.497 45.833 0.00 0.00 0.00 2.24
720 722 5.206299 CGAATAGAGTAGCGGACAAAGTAG 58.794 45.833 0.00 0.00 0.00 2.57
721 723 5.220815 CGAATAGAGTAGCGGACAAAGTAGT 60.221 44.000 0.00 0.00 0.00 2.73
723 725 4.868314 AGAGTAGCGGACAAAGTAGTTT 57.132 40.909 0.00 0.00 0.00 2.66
725 727 3.660865 AGTAGCGGACAAAGTAGTTTGG 58.339 45.455 23.54 9.89 46.42 3.28
727 729 0.240145 GCGGACAAAGTAGTTTGGGC 59.760 55.000 23.54 19.13 46.42 5.36
729 731 0.879090 GGACAAAGTAGTTTGGGCGG 59.121 55.000 23.54 2.44 46.42 6.13
732 734 1.165270 CAAAGTAGTTTGGGCGGGAG 58.835 55.000 14.24 0.00 39.63 4.30
734 736 1.848886 AAGTAGTTTGGGCGGGAGGG 61.849 60.000 0.00 0.00 0.00 4.30
735 737 2.204029 TAGTTTGGGCGGGAGGGT 60.204 61.111 0.00 0.00 0.00 4.34
736 738 2.598787 TAGTTTGGGCGGGAGGGTG 61.599 63.158 0.00 0.00 0.00 4.61
737 739 4.280019 GTTTGGGCGGGAGGGTGT 62.280 66.667 0.00 0.00 0.00 4.16
738 740 2.529643 TTTGGGCGGGAGGGTGTA 60.530 61.111 0.00 0.00 0.00 2.90
739 741 2.897762 TTTGGGCGGGAGGGTGTAC 61.898 63.158 0.00 0.00 0.00 2.90
740 742 4.642488 TGGGCGGGAGGGTGTACA 62.642 66.667 0.00 0.00 0.00 2.90
743 813 1.073548 GGCGGGAGGGTGTACAAAA 59.926 57.895 0.00 0.00 0.00 2.44
745 815 0.958876 GCGGGAGGGTGTACAAAAGG 60.959 60.000 0.00 0.00 0.00 3.11
752 822 4.403113 GGAGGGTGTACAAAAGGAAAAACA 59.597 41.667 0.00 0.00 0.00 2.83
757 827 6.091577 GGGTGTACAAAAGGAAAAACAGTTTG 59.908 38.462 0.00 0.00 35.72 2.93
862 933 2.622962 GGTTTCCCCTGCCGAAACG 61.623 63.158 7.20 0.00 46.54 3.60
872 943 0.239879 TGCCGAAACGAATTCCAAGC 59.760 50.000 0.00 0.00 34.34 4.01
873 944 0.521735 GCCGAAACGAATTCCAAGCT 59.478 50.000 0.00 0.00 34.34 3.74
874 945 1.735571 GCCGAAACGAATTCCAAGCTA 59.264 47.619 0.00 0.00 34.34 3.32
876 947 2.223044 CCGAAACGAATTCCAAGCTAGC 60.223 50.000 6.62 6.62 34.34 3.42
877 948 2.534939 CGAAACGAATTCCAAGCTAGCG 60.535 50.000 9.55 0.00 34.34 4.26
878 949 2.094762 AACGAATTCCAAGCTAGCGT 57.905 45.000 9.55 2.32 0.00 5.07
879 950 2.953466 ACGAATTCCAAGCTAGCGTA 57.047 45.000 9.55 0.00 0.00 4.42
904 1160 3.217242 CGGATCGGAACCCATCATC 57.783 57.895 0.00 0.00 0.00 2.92
905 1161 0.320771 CGGATCGGAACCCATCATCC 60.321 60.000 0.00 0.00 0.00 3.51
956 1235 4.257267 TCAGTATGATCGATCCGCAAAT 57.743 40.909 22.31 11.16 42.56 2.32
960 1239 7.543756 TCAGTATGATCGATCCGCAAATAATA 58.456 34.615 22.31 8.14 42.56 0.98
963 1242 8.417106 AGTATGATCGATCCGCAAATAATATCT 58.583 33.333 22.31 8.11 0.00 1.98
985 1264 6.516718 TCTCGATCTGTCTTCAAACTTCTTT 58.483 36.000 0.00 0.00 0.00 2.52
990 1269 4.014847 TGTCTTCAAACTTCTTTGTGCG 57.985 40.909 0.00 0.00 38.38 5.34
1028 1311 2.949106 CTTCACCAAGGCACGCAG 59.051 61.111 0.00 0.00 0.00 5.18
1047 1330 4.020617 CGCAGCCCTTCCTCACCA 62.021 66.667 0.00 0.00 0.00 4.17
1051 1334 2.440980 GCCCTTCCTCACCATGGC 60.441 66.667 13.04 0.00 0.00 4.40
1096 1379 1.954362 GCTCATCCTCTGCCGACTGT 61.954 60.000 0.00 0.00 0.00 3.55
1101 1384 2.179517 CTCTGCCGACTGTCGTCC 59.820 66.667 26.35 17.69 38.40 4.79
1105 1388 2.099831 GCCGACTGTCGTCCTACG 59.900 66.667 26.35 12.55 44.19 3.51
1228 1511 0.960861 GGACACCTACCAAAGCCTGC 60.961 60.000 0.00 0.00 0.00 4.85
1308 1591 2.040544 CGCCTTTGACGGGATGCTT 61.041 57.895 0.00 0.00 0.00 3.91
1309 1592 1.586154 CGCCTTTGACGGGATGCTTT 61.586 55.000 0.00 0.00 0.00 3.51
1320 1603 0.109132 GGATGCTTTGCAACTTCGGG 60.109 55.000 0.00 0.00 43.62 5.14
1332 1615 2.683933 TTCGGGAGCTGGGTCCTC 60.684 66.667 16.80 7.71 36.75 3.71
1353 1636 2.430921 GAGCACCACCACGACGAG 60.431 66.667 0.00 0.00 0.00 4.18
1354 1637 3.916392 GAGCACCACCACGACGAGG 62.916 68.421 9.97 9.97 0.00 4.63
1357 1640 3.300765 ACCACCACGACGAGGACC 61.301 66.667 18.62 0.00 0.00 4.46
1359 1642 2.049433 CACCACGACGAGGACCAC 60.049 66.667 18.62 0.00 0.00 4.16
1361 1644 2.049433 CCACGACGAGGACCACAC 60.049 66.667 5.25 0.00 0.00 3.82
1371 1654 2.280552 GGACCACACCTACAGGCGA 61.281 63.158 0.00 0.00 39.32 5.54
1374 1657 2.126071 CACACCTACAGGCGACGG 60.126 66.667 0.00 0.00 39.32 4.79
1392 1675 1.060937 GTGCTTGCTGCGTAATCCG 59.939 57.895 0.00 0.00 46.63 4.18
1408 1691 3.691342 CGTTCTCCGGAGCCACCA 61.691 66.667 27.39 6.09 38.90 4.17
1410 1693 1.672854 CGTTCTCCGGAGCCACCATA 61.673 60.000 27.39 4.41 38.90 2.74
1431 1714 1.956170 CATACCGTGGCGCTCCATC 60.956 63.158 7.64 0.00 45.62 3.51
1467 1750 3.489229 GGCCGCTCATGGAGTTTATTTTC 60.489 47.826 0.00 0.00 31.39 2.29
1486 1769 1.139989 CAAGTTGATCGTGTGCTCGT 58.860 50.000 0.00 0.00 0.00 4.18
1575 1861 4.745751 TGGTCGTTTAGCCCGGCG 62.746 66.667 3.05 0.00 0.00 6.46
1589 1875 2.737679 GCCCGGCGGATGATAGTTATAC 60.738 54.545 30.79 0.00 0.00 1.47
1593 1879 4.552355 CGGCGGATGATAGTTATACAACA 58.448 43.478 0.00 0.00 37.10 3.33
1626 1912 2.368221 TGCCTTTTTCCATGGAAACCTG 59.632 45.455 34.50 25.30 42.88 4.00
1629 1915 4.222810 GCCTTTTTCCATGGAAACCTGTAT 59.777 41.667 34.50 0.00 42.88 2.29
1639 1925 2.673368 GGAAACCTGTATGCTCTCAACG 59.327 50.000 0.00 0.00 0.00 4.10
1673 1959 4.440880 CTCTTCCTTCATCACCATGACTC 58.559 47.826 0.00 0.00 38.86 3.36
1686 1972 0.608640 ATGACTCGGGTGGTCAAGTC 59.391 55.000 0.00 0.00 45.09 3.01
1794 2080 1.769098 CGTCATCATCCGGCAAGCTG 61.769 60.000 0.00 0.00 0.00 4.24
1836 2122 3.838317 TCGATCCTCCTAATTATGGGGTG 59.162 47.826 6.56 0.00 0.00 4.61
1857 2143 4.382754 GTGAAAAAGACGGCAATTGATCAC 59.617 41.667 10.34 0.77 0.00 3.06
1884 2170 2.355363 TTGGACGTGTTCGAGGCG 60.355 61.111 0.00 4.28 40.62 5.52
1899 2185 3.188460 TCGAGGCGGATTTTGAGAAAAAG 59.812 43.478 0.00 0.00 33.47 2.27
1942 2228 1.446272 GGCGACCAGGTTCTCTTCG 60.446 63.158 0.00 0.00 0.00 3.79
2044 2330 3.349927 CTTGAATGGAATCAGACAGCCA 58.650 45.455 0.00 0.00 34.45 4.75
2047 2333 2.134789 ATGGAATCAGACAGCCAACC 57.865 50.000 0.00 0.00 33.51 3.77
2048 2334 0.770499 TGGAATCAGACAGCCAACCA 59.230 50.000 0.00 0.00 0.00 3.67
2074 2360 4.991056 CGCATGGTAGCTCTATGTACAATT 59.009 41.667 0.00 0.00 37.35 2.32
2075 2361 6.156519 CGCATGGTAGCTCTATGTACAATTA 58.843 40.000 0.00 0.00 37.35 1.40
2198 2484 2.024176 TGGCTCTTCCCTTGTGACTA 57.976 50.000 0.00 0.00 0.00 2.59
2421 5766 8.840200 AGGTACTCAAAAGGTATCTTAGATCA 57.160 34.615 0.00 0.00 32.01 2.92
2491 6823 2.803451 GTGTGGCACGAAACAATTTCA 58.197 42.857 13.77 0.00 39.63 2.69
2526 6858 5.092554 TGATGGCAACTTTAGTTATCCGA 57.907 39.130 0.00 0.00 36.32 4.55
2532 6864 5.357257 GCAACTTTAGTTATCCGAGGATGA 58.643 41.667 14.50 3.64 36.32 2.92
2544 6876 5.178797 ATCCGAGGATGACAACTTTAGTTG 58.821 41.667 18.46 18.46 45.25 3.16
2570 6902 3.068590 AGCATGTCAACTTTCTGTTTGGG 59.931 43.478 0.00 0.00 36.63 4.12
2654 6987 1.301165 GGGCGGTGTTACTTCGTGT 60.301 57.895 0.00 0.00 0.00 4.49
2761 7094 4.437390 CCGACAGAGATTAAAAATTGCGCT 60.437 41.667 9.73 0.00 0.00 5.92
2770 7103 3.942539 AAAAATTGCGCTGAACCAAAC 57.057 38.095 9.73 0.00 0.00 2.93
2795 7128 0.396974 AAAAAGCACACCTGCCCTCA 60.397 50.000 0.00 0.00 45.53 3.86
2796 7129 0.825010 AAAAGCACACCTGCCCTCAG 60.825 55.000 0.00 0.00 45.53 3.35
2842 7175 4.041567 AGGGCCTTTTAAAGATTTTGTGGG 59.958 41.667 0.00 0.00 0.00 4.61
2862 7195 4.227864 GGTTTTCCCTCATGACAGAGAT 57.772 45.455 0.00 0.00 37.87 2.75
2942 7275 3.826729 GGCTACTTCTGTTTTGGTTCCAT 59.173 43.478 0.00 0.00 0.00 3.41
2947 7280 7.923878 GCTACTTCTGTTTTGGTTCCATTAAAA 59.076 33.333 0.00 0.00 0.00 1.52
2948 7281 9.810545 CTACTTCTGTTTTGGTTCCATTAAAAA 57.189 29.630 0.00 0.00 0.00 1.94
3114 7448 4.838152 CCCCTGCGGTGATCCACG 62.838 72.222 2.15 2.15 34.83 4.94
3115 7449 3.770040 CCCTGCGGTGATCCACGA 61.770 66.667 9.94 0.00 34.83 4.35
3117 7451 1.739667 CCTGCGGTGATCCACGATA 59.260 57.895 9.94 0.00 34.83 2.92
3143 7477 0.907486 TGTCCTGGATGAGCTTGAGG 59.093 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.003355 AATCTGAGTGCCACGTGGG 60.003 57.895 34.58 17.59 40.85 4.61
1 2 0.036952 AGAATCTGAGTGCCACGTGG 60.037 55.000 30.66 30.66 38.53 4.94
2 3 2.654749 TAGAATCTGAGTGCCACGTG 57.345 50.000 9.08 9.08 0.00 4.49
3 4 2.299013 TGTTAGAATCTGAGTGCCACGT 59.701 45.455 0.00 0.00 0.00 4.49
4 5 2.959516 TGTTAGAATCTGAGTGCCACG 58.040 47.619 0.00 0.00 0.00 4.94
5 6 5.181748 AGAATGTTAGAATCTGAGTGCCAC 58.818 41.667 0.00 0.00 0.00 5.01
6 7 5.426689 AGAATGTTAGAATCTGAGTGCCA 57.573 39.130 0.00 0.00 0.00 4.92
7 8 6.749923 AAAGAATGTTAGAATCTGAGTGCC 57.250 37.500 0.00 0.00 0.00 5.01
8 9 7.766278 TCCTAAAGAATGTTAGAATCTGAGTGC 59.234 37.037 0.00 0.00 33.62 4.40
9 10 9.829507 ATCCTAAAGAATGTTAGAATCTGAGTG 57.170 33.333 0.00 0.00 33.62 3.51
15 16 9.890352 GCATGAATCCTAAAGAATGTTAGAATC 57.110 33.333 0.00 0.00 33.62 2.52
16 17 9.412460 TGCATGAATCCTAAAGAATGTTAGAAT 57.588 29.630 0.00 0.00 33.62 2.40
17 18 8.806429 TGCATGAATCCTAAAGAATGTTAGAA 57.194 30.769 0.00 0.00 33.62 2.10
18 19 8.806429 TTGCATGAATCCTAAAGAATGTTAGA 57.194 30.769 0.00 0.00 33.62 2.10
19 20 9.859427 TTTTGCATGAATCCTAAAGAATGTTAG 57.141 29.630 0.00 0.00 0.00 2.34
20 21 9.638239 GTTTTGCATGAATCCTAAAGAATGTTA 57.362 29.630 0.00 0.00 0.00 2.41
21 22 8.149647 TGTTTTGCATGAATCCTAAAGAATGTT 58.850 29.630 0.00 0.00 0.00 2.71
22 23 7.669427 TGTTTTGCATGAATCCTAAAGAATGT 58.331 30.769 0.00 0.00 0.00 2.71
23 24 8.537049 TTGTTTTGCATGAATCCTAAAGAATG 57.463 30.769 0.00 0.00 0.00 2.67
24 25 9.558396 TTTTGTTTTGCATGAATCCTAAAGAAT 57.442 25.926 0.00 0.00 0.00 2.40
25 26 8.954950 TTTTGTTTTGCATGAATCCTAAAGAA 57.045 26.923 0.00 0.00 0.00 2.52
26 27 9.206870 GATTTTGTTTTGCATGAATCCTAAAGA 57.793 29.630 0.00 0.00 30.37 2.52
27 28 8.991026 TGATTTTGTTTTGCATGAATCCTAAAG 58.009 29.630 0.00 0.00 33.09 1.85
28 29 8.899427 TGATTTTGTTTTGCATGAATCCTAAA 57.101 26.923 0.00 0.00 33.09 1.85
29 30 8.899427 TTGATTTTGTTTTGCATGAATCCTAA 57.101 26.923 0.00 0.00 33.09 2.69
30 31 8.937884 CATTGATTTTGTTTTGCATGAATCCTA 58.062 29.630 0.00 0.00 33.09 2.94
31 32 7.446013 ACATTGATTTTGTTTTGCATGAATCCT 59.554 29.630 0.00 0.00 33.09 3.24
32 33 7.535940 CACATTGATTTTGTTTTGCATGAATCC 59.464 33.333 0.00 0.00 33.09 3.01
33 34 7.535940 CCACATTGATTTTGTTTTGCATGAATC 59.464 33.333 0.00 0.00 33.90 2.52
34 35 7.228906 TCCACATTGATTTTGTTTTGCATGAAT 59.771 29.630 0.00 0.00 0.00 2.57
35 36 6.541278 TCCACATTGATTTTGTTTTGCATGAA 59.459 30.769 0.00 0.00 0.00 2.57
36 37 6.053650 TCCACATTGATTTTGTTTTGCATGA 58.946 32.000 0.00 0.00 0.00 3.07
37 38 6.301687 TCCACATTGATTTTGTTTTGCATG 57.698 33.333 0.00 0.00 0.00 4.06
38 39 6.711194 TGATCCACATTGATTTTGTTTTGCAT 59.289 30.769 0.00 0.00 0.00 3.96
39 40 6.053650 TGATCCACATTGATTTTGTTTTGCA 58.946 32.000 0.00 0.00 0.00 4.08
40 41 6.542574 TGATCCACATTGATTTTGTTTTGC 57.457 33.333 0.00 0.00 0.00 3.68
41 42 7.577979 CCTTGATCCACATTGATTTTGTTTTG 58.422 34.615 0.00 0.00 0.00 2.44
42 43 6.205270 GCCTTGATCCACATTGATTTTGTTTT 59.795 34.615 0.00 0.00 0.00 2.43
43 44 5.702209 GCCTTGATCCACATTGATTTTGTTT 59.298 36.000 0.00 0.00 0.00 2.83
44 45 5.240121 GCCTTGATCCACATTGATTTTGTT 58.760 37.500 0.00 0.00 0.00 2.83
45 46 4.618927 CGCCTTGATCCACATTGATTTTGT 60.619 41.667 0.00 0.00 0.00 2.83
46 47 3.861113 CGCCTTGATCCACATTGATTTTG 59.139 43.478 0.00 0.00 0.00 2.44
47 48 3.511146 ACGCCTTGATCCACATTGATTTT 59.489 39.130 0.00 0.00 0.00 1.82
48 49 3.091545 ACGCCTTGATCCACATTGATTT 58.908 40.909 0.00 0.00 0.00 2.17
49 50 2.424601 CACGCCTTGATCCACATTGATT 59.575 45.455 0.00 0.00 0.00 2.57
50 51 2.019249 CACGCCTTGATCCACATTGAT 58.981 47.619 0.00 0.00 0.00 2.57
51 52 1.271325 ACACGCCTTGATCCACATTGA 60.271 47.619 0.00 0.00 0.00 2.57
52 53 1.135603 CACACGCCTTGATCCACATTG 60.136 52.381 0.00 0.00 0.00 2.82
53 54 1.167851 CACACGCCTTGATCCACATT 58.832 50.000 0.00 0.00 0.00 2.71
54 55 0.677731 CCACACGCCTTGATCCACAT 60.678 55.000 0.00 0.00 0.00 3.21
55 56 1.302431 CCACACGCCTTGATCCACA 60.302 57.895 0.00 0.00 0.00 4.17
56 57 2.040544 CCCACACGCCTTGATCCAC 61.041 63.158 0.00 0.00 0.00 4.02
57 58 2.350895 CCCACACGCCTTGATCCA 59.649 61.111 0.00 0.00 0.00 3.41
58 59 3.134127 GCCCACACGCCTTGATCC 61.134 66.667 0.00 0.00 0.00 3.36
59 60 1.315257 ATTGCCCACACGCCTTGATC 61.315 55.000 0.00 0.00 0.00 2.92
60 61 1.304381 ATTGCCCACACGCCTTGAT 60.304 52.632 0.00 0.00 0.00 2.57
61 62 2.115052 ATTGCCCACACGCCTTGA 59.885 55.556 0.00 0.00 0.00 3.02
62 63 2.259204 CATTGCCCACACGCCTTG 59.741 61.111 0.00 0.00 0.00 3.61
63 64 2.203480 ACATTGCCCACACGCCTT 60.203 55.556 0.00 0.00 0.00 4.35
64 65 2.985282 CACATTGCCCACACGCCT 60.985 61.111 0.00 0.00 0.00 5.52
65 66 4.722855 GCACATTGCCCACACGCC 62.723 66.667 0.00 0.00 37.42 5.68
66 67 2.967929 TTTGCACATTGCCCACACGC 62.968 55.000 0.00 0.00 44.23 5.34
67 68 1.067084 TTTGCACATTGCCCACACG 59.933 52.632 0.00 0.00 44.23 4.49
68 69 0.179089 TGTTTGCACATTGCCCACAC 60.179 50.000 0.00 0.00 44.23 3.82
69 70 0.757512 ATGTTTGCACATTGCCCACA 59.242 45.000 0.00 0.00 41.16 4.17
70 71 1.149987 CATGTTTGCACATTGCCCAC 58.850 50.000 0.00 0.00 41.16 4.61
71 72 3.608760 CATGTTTGCACATTGCCCA 57.391 47.368 0.00 0.00 41.16 5.36
82 83 2.870690 CACACGTGTGGCATGTTTG 58.129 52.632 35.65 11.41 42.10 2.93
93 94 3.811118 TAACGCCCACCCACACGTG 62.811 63.158 15.48 15.48 39.00 4.49
94 95 2.791501 GATAACGCCCACCCACACGT 62.792 60.000 0.00 0.00 41.16 4.49
95 96 2.046700 ATAACGCCCACCCACACG 60.047 61.111 0.00 0.00 0.00 4.49
96 97 0.393808 ATGATAACGCCCACCCACAC 60.394 55.000 0.00 0.00 0.00 3.82
97 98 0.329931 AATGATAACGCCCACCCACA 59.670 50.000 0.00 0.00 0.00 4.17
98 99 1.470051 AAATGATAACGCCCACCCAC 58.530 50.000 0.00 0.00 0.00 4.61
99 100 1.821753 CAAAATGATAACGCCCACCCA 59.178 47.619 0.00 0.00 0.00 4.51
100 101 1.822371 ACAAAATGATAACGCCCACCC 59.178 47.619 0.00 0.00 0.00 4.61
101 102 3.586100 AACAAAATGATAACGCCCACC 57.414 42.857 0.00 0.00 0.00 4.61
102 103 9.953697 TTATATAAACAAAATGATAACGCCCAC 57.046 29.630 0.00 0.00 0.00 4.61
149 150 9.099454 TCAATTTTAATGCACGGTAAACTTTTT 57.901 25.926 0.00 0.00 0.00 1.94
150 151 8.649973 TCAATTTTAATGCACGGTAAACTTTT 57.350 26.923 0.00 0.00 0.00 2.27
151 152 8.825667 ATCAATTTTAATGCACGGTAAACTTT 57.174 26.923 0.00 0.00 0.00 2.66
152 153 8.825667 AATCAATTTTAATGCACGGTAAACTT 57.174 26.923 0.00 0.00 0.00 2.66
153 154 8.085296 TGAATCAATTTTAATGCACGGTAAACT 58.915 29.630 0.00 0.00 0.00 2.66
154 155 8.233692 TGAATCAATTTTAATGCACGGTAAAC 57.766 30.769 0.00 0.00 0.00 2.01
155 156 7.062839 GCTGAATCAATTTTAATGCACGGTAAA 59.937 33.333 0.00 0.00 0.00 2.01
156 157 6.529829 GCTGAATCAATTTTAATGCACGGTAA 59.470 34.615 0.00 0.00 0.00 2.85
157 158 6.033341 GCTGAATCAATTTTAATGCACGGTA 58.967 36.000 0.00 0.00 0.00 4.02
158 159 4.864247 GCTGAATCAATTTTAATGCACGGT 59.136 37.500 0.00 0.00 0.00 4.83
159 160 4.027458 CGCTGAATCAATTTTAATGCACGG 60.027 41.667 0.00 0.00 0.00 4.94
160 161 4.558470 ACGCTGAATCAATTTTAATGCACG 59.442 37.500 0.00 0.00 0.00 5.34
161 162 5.345741 ACACGCTGAATCAATTTTAATGCAC 59.654 36.000 0.00 0.00 0.00 4.57
162 163 5.468592 ACACGCTGAATCAATTTTAATGCA 58.531 33.333 0.00 0.00 0.00 3.96
163 164 7.684062 ATACACGCTGAATCAATTTTAATGC 57.316 32.000 0.00 0.00 0.00 3.56
164 165 9.288124 TGAATACACGCTGAATCAATTTTAATG 57.712 29.630 0.00 0.00 0.00 1.90
165 166 9.853555 TTGAATACACGCTGAATCAATTTTAAT 57.146 25.926 0.00 0.00 0.00 1.40
166 167 9.684448 TTTGAATACACGCTGAATCAATTTTAA 57.316 25.926 0.00 0.00 0.00 1.52
167 168 9.123709 GTTTGAATACACGCTGAATCAATTTTA 57.876 29.630 0.00 0.00 0.00 1.52
168 169 7.651304 TGTTTGAATACACGCTGAATCAATTTT 59.349 29.630 0.00 0.00 0.00 1.82
169 170 7.144661 TGTTTGAATACACGCTGAATCAATTT 58.855 30.769 0.00 0.00 0.00 1.82
170 171 6.676950 TGTTTGAATACACGCTGAATCAATT 58.323 32.000 0.00 0.00 0.00 2.32
171 172 6.252967 TGTTTGAATACACGCTGAATCAAT 57.747 33.333 0.00 0.00 0.00 2.57
172 173 5.681337 TGTTTGAATACACGCTGAATCAA 57.319 34.783 0.00 0.00 0.00 2.57
173 174 5.681337 TTGTTTGAATACACGCTGAATCA 57.319 34.783 0.00 0.00 0.00 2.57
174 175 8.841444 ATATTTGTTTGAATACACGCTGAATC 57.159 30.769 0.00 0.00 0.00 2.52
175 176 9.289303 GAATATTTGTTTGAATACACGCTGAAT 57.711 29.630 0.00 0.00 0.00 2.57
176 177 8.293157 TGAATATTTGTTTGAATACACGCTGAA 58.707 29.630 0.00 0.00 0.00 3.02
177 178 7.811653 TGAATATTTGTTTGAATACACGCTGA 58.188 30.769 0.00 0.00 0.00 4.26
178 179 8.619146 ATGAATATTTGTTTGAATACACGCTG 57.381 30.769 0.00 0.00 0.00 5.18
179 180 8.458052 TGATGAATATTTGTTTGAATACACGCT 58.542 29.630 0.00 0.00 0.00 5.07
180 181 8.613613 TGATGAATATTTGTTTGAATACACGC 57.386 30.769 0.00 0.00 0.00 5.34
257 258 7.536895 TCAAATCCACACTGAACAATTTTTG 57.463 32.000 0.00 0.00 0.00 2.44
258 259 8.558973 TTTCAAATCCACACTGAACAATTTTT 57.441 26.923 0.00 0.00 0.00 1.94
259 260 8.558973 TTTTCAAATCCACACTGAACAATTTT 57.441 26.923 0.00 0.00 0.00 1.82
260 261 8.558973 TTTTTCAAATCCACACTGAACAATTT 57.441 26.923 0.00 0.00 0.00 1.82
282 283 5.461032 TTTAGCATCCGGTGAACATTTTT 57.539 34.783 0.00 0.00 0.00 1.94
283 284 5.461032 TTTTAGCATCCGGTGAACATTTT 57.539 34.783 0.00 0.00 0.00 1.82
284 285 5.242838 TCTTTTTAGCATCCGGTGAACATTT 59.757 36.000 0.00 0.00 0.00 2.32
285 286 4.764823 TCTTTTTAGCATCCGGTGAACATT 59.235 37.500 0.00 0.00 0.00 2.71
286 287 4.331968 TCTTTTTAGCATCCGGTGAACAT 58.668 39.130 0.00 0.00 0.00 2.71
287 288 3.745799 TCTTTTTAGCATCCGGTGAACA 58.254 40.909 0.00 0.00 0.00 3.18
288 289 3.751698 ACTCTTTTTAGCATCCGGTGAAC 59.248 43.478 0.00 0.00 0.00 3.18
289 290 4.015872 ACTCTTTTTAGCATCCGGTGAA 57.984 40.909 0.00 0.00 0.00 3.18
290 291 3.695830 ACTCTTTTTAGCATCCGGTGA 57.304 42.857 0.00 0.00 0.00 4.02
291 292 3.751175 TGAACTCTTTTTAGCATCCGGTG 59.249 43.478 0.00 0.00 0.00 4.94
292 293 4.003648 CTGAACTCTTTTTAGCATCCGGT 58.996 43.478 0.00 0.00 0.00 5.28
293 294 3.181506 GCTGAACTCTTTTTAGCATCCGG 60.182 47.826 0.00 0.00 34.64 5.14
294 295 3.484229 CGCTGAACTCTTTTTAGCATCCG 60.484 47.826 0.00 0.00 34.16 4.18
295 296 3.437049 ACGCTGAACTCTTTTTAGCATCC 59.563 43.478 0.00 0.00 34.16 3.51
296 297 4.083802 ACACGCTGAACTCTTTTTAGCATC 60.084 41.667 0.00 0.00 34.16 3.91
297 298 3.815401 ACACGCTGAACTCTTTTTAGCAT 59.185 39.130 0.00 0.00 34.16 3.79
298 299 3.202906 ACACGCTGAACTCTTTTTAGCA 58.797 40.909 0.00 0.00 34.16 3.49
299 300 3.879932 ACACGCTGAACTCTTTTTAGC 57.120 42.857 0.00 0.00 0.00 3.09
300 301 6.797033 CCAAATACACGCTGAACTCTTTTTAG 59.203 38.462 0.00 0.00 0.00 1.85
301 302 6.483974 TCCAAATACACGCTGAACTCTTTTTA 59.516 34.615 0.00 0.00 0.00 1.52
302 303 5.298276 TCCAAATACACGCTGAACTCTTTTT 59.702 36.000 0.00 0.00 0.00 1.94
303 304 4.819630 TCCAAATACACGCTGAACTCTTTT 59.180 37.500 0.00 0.00 0.00 2.27
304 305 4.385825 TCCAAATACACGCTGAACTCTTT 58.614 39.130 0.00 0.00 0.00 2.52
305 306 4.002906 TCCAAATACACGCTGAACTCTT 57.997 40.909 0.00 0.00 0.00 2.85
306 307 3.678056 TCCAAATACACGCTGAACTCT 57.322 42.857 0.00 0.00 0.00 3.24
307 308 4.742438 TTTCCAAATACACGCTGAACTC 57.258 40.909 0.00 0.00 0.00 3.01
308 309 4.553938 CGTTTTCCAAATACACGCTGAACT 60.554 41.667 0.00 0.00 0.00 3.01
309 310 3.662186 CGTTTTCCAAATACACGCTGAAC 59.338 43.478 0.00 0.00 0.00 3.18
310 311 3.312973 ACGTTTTCCAAATACACGCTGAA 59.687 39.130 0.00 0.00 34.14 3.02
311 312 2.873472 ACGTTTTCCAAATACACGCTGA 59.127 40.909 0.00 0.00 34.14 4.26
312 313 2.970609 CACGTTTTCCAAATACACGCTG 59.029 45.455 0.00 0.00 34.14 5.18
313 314 2.614983 ACACGTTTTCCAAATACACGCT 59.385 40.909 0.00 0.00 34.14 5.07
314 315 2.717011 CACACGTTTTCCAAATACACGC 59.283 45.455 0.00 0.00 34.14 5.34
315 316 2.717011 GCACACGTTTTCCAAATACACG 59.283 45.455 0.00 0.00 36.91 4.49
316 317 3.696898 TGCACACGTTTTCCAAATACAC 58.303 40.909 0.00 0.00 0.00 2.90
317 318 4.541779 GATGCACACGTTTTCCAAATACA 58.458 39.130 0.00 0.00 0.00 2.29
318 319 3.602062 CGATGCACACGTTTTCCAAATAC 59.398 43.478 6.92 0.00 0.00 1.89
319 320 3.365465 CCGATGCACACGTTTTCCAAATA 60.365 43.478 12.78 0.00 0.00 1.40
320 321 2.606795 CCGATGCACACGTTTTCCAAAT 60.607 45.455 12.78 0.00 0.00 2.32
321 322 1.268794 CCGATGCACACGTTTTCCAAA 60.269 47.619 12.78 0.00 0.00 3.28
322 323 0.309302 CCGATGCACACGTTTTCCAA 59.691 50.000 12.78 0.00 0.00 3.53
323 324 1.511318 CCCGATGCACACGTTTTCCA 61.511 55.000 12.78 0.00 0.00 3.53
324 325 1.209127 CCCGATGCACACGTTTTCC 59.791 57.895 12.78 0.00 0.00 3.13
325 326 0.802494 ATCCCGATGCACACGTTTTC 59.198 50.000 12.78 0.00 0.00 2.29
326 327 2.006888 CTATCCCGATGCACACGTTTT 58.993 47.619 12.78 1.85 0.00 2.43
327 328 1.651987 CTATCCCGATGCACACGTTT 58.348 50.000 12.78 2.13 0.00 3.60
328 329 0.810031 GCTATCCCGATGCACACGTT 60.810 55.000 12.78 2.41 0.00 3.99
329 330 1.227263 GCTATCCCGATGCACACGT 60.227 57.895 12.78 0.00 0.00 4.49
330 331 2.302952 CGCTATCCCGATGCACACG 61.303 63.158 7.95 7.95 0.00 4.49
331 332 1.067416 TCGCTATCCCGATGCACAC 59.933 57.895 0.00 0.00 31.36 3.82
332 333 1.067416 GTCGCTATCCCGATGCACA 59.933 57.895 0.00 0.00 39.67 4.57
333 334 2.016704 CGTCGCTATCCCGATGCAC 61.017 63.158 0.00 0.00 39.67 4.57
334 335 2.335011 CGTCGCTATCCCGATGCA 59.665 61.111 0.00 0.00 39.67 3.96
336 337 2.801162 CGCGTCGCTATCCCGATG 60.801 66.667 16.36 0.00 44.72 3.84
337 338 3.285215 ACGCGTCGCTATCCCGAT 61.285 61.111 16.36 0.00 39.67 4.18
338 339 4.246206 CACGCGTCGCTATCCCGA 62.246 66.667 9.86 0.00 34.40 5.14
339 340 3.538028 ATCACGCGTCGCTATCCCG 62.538 63.158 9.86 0.44 0.00 5.14
340 341 0.874607 AAATCACGCGTCGCTATCCC 60.875 55.000 9.86 0.00 0.00 3.85
341 342 0.928229 AAAATCACGCGTCGCTATCC 59.072 50.000 9.86 0.00 0.00 2.59
342 343 2.354196 CAAAAATCACGCGTCGCTATC 58.646 47.619 9.86 0.00 0.00 2.08
343 344 1.529010 GCAAAAATCACGCGTCGCTAT 60.529 47.619 9.86 3.23 0.00 2.97
344 345 0.179235 GCAAAAATCACGCGTCGCTA 60.179 50.000 9.86 0.64 0.00 4.26
345 346 1.440353 GCAAAAATCACGCGTCGCT 60.440 52.632 9.86 0.00 0.00 4.93
346 347 1.724234 TGCAAAAATCACGCGTCGC 60.724 52.632 9.86 7.29 0.00 5.19
347 348 2.043022 GTGCAAAAATCACGCGTCG 58.957 52.632 9.86 5.44 0.00 5.12
353 354 2.584791 CTACCAGCGTGCAAAAATCAC 58.415 47.619 0.00 0.00 0.00 3.06
354 355 1.068610 GCTACCAGCGTGCAAAAATCA 60.069 47.619 0.00 0.00 0.00 2.57
355 356 1.068610 TGCTACCAGCGTGCAAAAATC 60.069 47.619 0.00 0.00 46.26 2.17
356 357 0.958091 TGCTACCAGCGTGCAAAAAT 59.042 45.000 0.00 0.00 46.26 1.82
357 358 0.958091 ATGCTACCAGCGTGCAAAAA 59.042 45.000 0.00 0.00 46.26 1.94
358 359 1.737236 CTATGCTACCAGCGTGCAAAA 59.263 47.619 3.15 0.00 46.26 2.44
359 360 1.368641 CTATGCTACCAGCGTGCAAA 58.631 50.000 3.15 0.00 46.26 3.68
360 361 0.461870 CCTATGCTACCAGCGTGCAA 60.462 55.000 3.15 0.00 46.26 4.08
361 362 1.143838 CCTATGCTACCAGCGTGCA 59.856 57.895 3.15 0.00 46.26 4.57
362 363 1.595382 CCCTATGCTACCAGCGTGC 60.595 63.158 3.15 0.00 46.26 5.34
363 364 0.178068 AACCCTATGCTACCAGCGTG 59.822 55.000 3.15 0.00 46.26 5.34
364 365 0.909623 AAACCCTATGCTACCAGCGT 59.090 50.000 0.00 0.00 46.26 5.07
365 366 1.583054 GAAACCCTATGCTACCAGCG 58.417 55.000 0.00 0.00 46.26 5.18
366 367 1.968704 GGAAACCCTATGCTACCAGC 58.031 55.000 0.00 0.00 42.82 4.85
394 395 2.044551 CCAGGGAGGAGGCAAAGC 60.045 66.667 0.00 0.00 41.22 3.51
395 396 3.826282 TCCAGGGAGGAGGCAAAG 58.174 61.111 0.00 0.00 43.07 2.77
411 412 2.615869 GAGCAAGGATCGGAGCATATC 58.384 52.381 0.00 0.00 0.00 1.63
436 437 3.840763 GCTTTAGATGCAAAACGAACGAG 59.159 43.478 0.14 0.00 0.00 4.18
437 438 3.496884 AGCTTTAGATGCAAAACGAACGA 59.503 39.130 0.14 0.00 0.00 3.85
438 439 3.810373 AGCTTTAGATGCAAAACGAACG 58.190 40.909 0.00 0.00 0.00 3.95
547 549 2.034879 AAATGCAGAGGACGCCGTG 61.035 57.895 0.00 0.00 0.00 4.94
549 551 2.787249 CAAATGCAGAGGACGCCG 59.213 61.111 0.00 0.00 0.00 6.46
550 552 2.486966 GCAAATGCAGAGGACGCC 59.513 61.111 0.00 0.00 41.59 5.68
552 554 1.372087 GGAGGCAAATGCAGAGGACG 61.372 60.000 7.80 0.00 44.36 4.79
553 555 1.372087 CGGAGGCAAATGCAGAGGAC 61.372 60.000 7.80 0.00 44.36 3.85
554 556 1.078214 CGGAGGCAAATGCAGAGGA 60.078 57.895 7.80 0.00 44.36 3.71
555 557 2.117156 CCGGAGGCAAATGCAGAGG 61.117 63.158 7.80 1.33 46.14 3.69
568 570 2.202892 GGGCGCTTTCTACCGGAG 60.203 66.667 9.46 0.60 0.00 4.63
569 571 3.777910 GGGGCGCTTTCTACCGGA 61.778 66.667 9.46 0.00 0.00 5.14
570 572 3.782443 AGGGGCGCTTTCTACCGG 61.782 66.667 7.64 0.00 0.00 5.28
571 573 2.511600 CAGGGGCGCTTTCTACCG 60.512 66.667 7.64 0.00 0.00 4.02
572 574 2.124695 CCAGGGGCGCTTTCTACC 60.125 66.667 7.64 0.00 0.00 3.18
573 575 2.824489 GCCAGGGGCGCTTTCTAC 60.824 66.667 7.64 0.00 39.62 2.59
586 588 2.655364 CATCTACGCGTCGGCCAG 60.655 66.667 18.63 7.47 35.02 4.85
587 589 3.405592 GACATCTACGCGTCGGCCA 62.406 63.158 18.63 0.00 35.02 5.36
588 590 2.654404 GACATCTACGCGTCGGCC 60.654 66.667 18.63 0.00 35.02 6.13
589 591 1.472276 CTTGACATCTACGCGTCGGC 61.472 60.000 18.63 5.81 34.78 5.54
590 592 1.472276 GCTTGACATCTACGCGTCGG 61.472 60.000 18.63 10.79 34.78 4.79
591 593 0.523546 AGCTTGACATCTACGCGTCG 60.524 55.000 18.63 10.61 34.78 5.12
592 594 0.917259 CAGCTTGACATCTACGCGTC 59.083 55.000 18.63 0.00 0.00 5.19
594 596 1.633171 GCAGCTTGACATCTACGCG 59.367 57.895 3.53 3.53 0.00 6.01
595 597 1.633171 CGCAGCTTGACATCTACGC 59.367 57.895 0.00 0.00 0.00 4.42
596 598 1.148157 CCCGCAGCTTGACATCTACG 61.148 60.000 0.00 0.00 0.00 3.51
597 599 0.811616 CCCCGCAGCTTGACATCTAC 60.812 60.000 0.00 0.00 0.00 2.59
599 601 2.270205 CCCCGCAGCTTGACATCT 59.730 61.111 0.00 0.00 0.00 2.90
600 602 2.109126 GTCCCCGCAGCTTGACATC 61.109 63.158 0.00 0.00 0.00 3.06
601 603 2.045926 GTCCCCGCAGCTTGACAT 60.046 61.111 0.00 0.00 0.00 3.06
602 604 2.731691 GAAGTCCCCGCAGCTTGACA 62.732 60.000 8.11 0.00 0.00 3.58
603 605 2.032681 AAGTCCCCGCAGCTTGAC 59.967 61.111 0.00 0.00 0.00 3.18
605 607 2.747855 GGAAGTCCCCGCAGCTTG 60.748 66.667 0.00 0.00 0.00 4.01
607 609 3.710722 CAGGAAGTCCCCGCAGCT 61.711 66.667 0.00 0.00 36.42 4.24
608 610 3.706373 TCAGGAAGTCCCCGCAGC 61.706 66.667 0.00 0.00 36.42 5.25
609 611 2.266055 GTCAGGAAGTCCCCGCAG 59.734 66.667 0.00 0.00 36.42 5.18
611 613 4.452733 CGGTCAGGAAGTCCCCGC 62.453 72.222 1.31 0.00 33.01 6.13
614 616 4.452733 CGCCGGTCAGGAAGTCCC 62.453 72.222 1.90 0.00 45.00 4.46
618 620 2.515996 TTAAGGCGCCGGTCAGGAAG 62.516 60.000 23.20 0.00 45.00 3.46
619 621 2.515996 CTTAAGGCGCCGGTCAGGAA 62.516 60.000 23.20 7.57 45.00 3.36
620 622 2.998480 TTAAGGCGCCGGTCAGGA 60.998 61.111 23.20 0.80 45.00 3.86
621 623 2.511600 CTTAAGGCGCCGGTCAGG 60.512 66.667 23.20 6.79 44.97 3.86
622 624 1.810030 GACTTAAGGCGCCGGTCAG 60.810 63.158 26.98 21.35 0.00 3.51
623 625 2.263540 GACTTAAGGCGCCGGTCA 59.736 61.111 26.98 13.12 0.00 4.02
624 626 1.810030 CTGACTTAAGGCGCCGGTC 60.810 63.158 23.20 25.02 0.00 4.79
626 628 3.195698 GCTGACTTAAGGCGCCGG 61.196 66.667 23.20 15.03 0.00 6.13
627 629 3.195698 GGCTGACTTAAGGCGCCG 61.196 66.667 23.20 9.47 32.55 6.46
631 633 0.808060 GCTCTCGGCTGACTTAAGGC 60.808 60.000 7.53 3.92 39.29 4.35
632 634 0.532573 TGCTCTCGGCTGACTTAAGG 59.467 55.000 7.53 0.00 42.39 2.69
667 669 3.475774 GTCGAACGCGGCGATGTT 61.476 61.111 30.94 14.92 40.19 2.71
719 721 3.966543 CACCCTCCCGCCCAAACT 61.967 66.667 0.00 0.00 0.00 2.66
720 722 2.897762 TACACCCTCCCGCCCAAAC 61.898 63.158 0.00 0.00 0.00 2.93
721 723 2.529643 TACACCCTCCCGCCCAAA 60.530 61.111 0.00 0.00 0.00 3.28
723 725 4.642488 TGTACACCCTCCCGCCCA 62.642 66.667 0.00 0.00 0.00 5.36
725 727 0.958876 CTTTTGTACACCCTCCCGCC 60.959 60.000 0.00 0.00 0.00 6.13
727 729 0.688487 TCCTTTTGTACACCCTCCCG 59.312 55.000 0.00 0.00 0.00 5.14
729 731 4.403113 TGTTTTTCCTTTTGTACACCCTCC 59.597 41.667 0.00 0.00 0.00 4.30
732 734 5.333299 ACTGTTTTTCCTTTTGTACACCC 57.667 39.130 0.00 0.00 0.00 4.61
734 736 6.091577 CCCAAACTGTTTTTCCTTTTGTACAC 59.908 38.462 2.41 0.00 0.00 2.90
735 737 6.166982 CCCAAACTGTTTTTCCTTTTGTACA 58.833 36.000 2.41 0.00 0.00 2.90
736 738 5.583061 CCCCAAACTGTTTTTCCTTTTGTAC 59.417 40.000 2.41 0.00 0.00 2.90
737 739 5.484290 TCCCCAAACTGTTTTTCCTTTTGTA 59.516 36.000 2.41 0.00 0.00 2.41
738 740 4.287326 TCCCCAAACTGTTTTTCCTTTTGT 59.713 37.500 2.41 0.00 0.00 2.83
739 741 4.837972 TCCCCAAACTGTTTTTCCTTTTG 58.162 39.130 2.41 0.00 0.00 2.44
740 742 5.496556 CTTCCCCAAACTGTTTTTCCTTTT 58.503 37.500 2.41 0.00 0.00 2.27
743 813 3.038280 CCTTCCCCAAACTGTTTTTCCT 58.962 45.455 2.41 0.00 0.00 3.36
745 815 4.746535 TTCCTTCCCCAAACTGTTTTTC 57.253 40.909 2.41 0.00 0.00 2.29
752 822 2.376855 CCTCTCTTTCCTTCCCCAAACT 59.623 50.000 0.00 0.00 0.00 2.66
757 827 0.698818 TTGCCTCTCTTTCCTTCCCC 59.301 55.000 0.00 0.00 0.00 4.81
862 933 2.281762 CACGTACGCTAGCTTGGAATTC 59.718 50.000 16.72 0.00 0.00 2.17
872 943 0.041488 GATCCGGTCACGTACGCTAG 60.041 60.000 16.72 5.87 38.78 3.42
873 944 1.765161 CGATCCGGTCACGTACGCTA 61.765 60.000 16.72 0.00 38.78 4.26
874 945 2.796651 GATCCGGTCACGTACGCT 59.203 61.111 16.72 0.00 38.78 5.07
876 947 2.023741 CCGATCCGGTCACGTACG 59.976 66.667 15.01 15.01 42.73 3.67
895 1151 4.080015 TGGTTTTATCTTCGGATGATGGGT 60.080 41.667 14.65 0.00 36.01 4.51
898 1154 6.986817 ACTACTGGTTTTATCTTCGGATGATG 59.013 38.462 14.65 1.51 36.01 3.07
902 1158 7.657023 ACTACTACTGGTTTTATCTTCGGAT 57.343 36.000 0.00 0.00 38.39 4.18
903 1159 7.284034 CCTACTACTACTGGTTTTATCTTCGGA 59.716 40.741 0.00 0.00 0.00 4.55
904 1160 7.424001 CCTACTACTACTGGTTTTATCTTCGG 58.576 42.308 0.00 0.00 0.00 4.30
905 1161 6.916932 GCCTACTACTACTGGTTTTATCTTCG 59.083 42.308 0.00 0.00 0.00 3.79
908 1164 5.221204 GCGCCTACTACTACTGGTTTTATCT 60.221 44.000 0.00 0.00 0.00 1.98
956 1235 9.737427 GAAGTTTGAAGACAGATCGAGATATTA 57.263 33.333 0.00 0.00 0.00 0.98
960 1239 6.279513 AGAAGTTTGAAGACAGATCGAGAT 57.720 37.500 0.00 0.00 0.00 2.75
963 1242 6.018751 CACAAAGAAGTTTGAAGACAGATCGA 60.019 38.462 4.91 0.00 45.22 3.59
990 1269 2.263741 GGCACCCATGATGCGATCC 61.264 63.158 13.67 0.00 44.37 3.36
998 1281 1.303561 GTGAAGCAGGCACCCATGA 60.304 57.895 0.00 0.00 0.00 3.07
1028 1311 2.435059 GTGAGGAAGGGCTGCGTC 60.435 66.667 0.00 0.00 0.00 5.19
1041 1324 3.391665 GAGGTCCGGCCATGGTGAG 62.392 68.421 14.67 4.94 40.61 3.51
1066 1349 2.044946 GATGAGCCCCGCAACCTT 60.045 61.111 0.00 0.00 0.00 3.50
1101 1384 4.554363 CTCAGGCGGTCGGCGTAG 62.554 72.222 6.85 8.80 44.92 3.51
1116 1399 4.821589 CAGACGGCCCGGAAGCTC 62.822 72.222 8.57 0.00 0.00 4.09
1215 1498 1.745489 GTCCGGCAGGCTTTGGTAG 60.745 63.158 0.00 0.00 37.47 3.18
1292 1575 0.109132 GCAAAGCATCCCGTCAAAGG 60.109 55.000 0.00 0.00 0.00 3.11
1296 1579 0.537143 AGTTGCAAAGCATCCCGTCA 60.537 50.000 0.00 0.00 38.76 4.35
1308 1591 1.600636 CCAGCTCCCGAAGTTGCAA 60.601 57.895 0.00 0.00 35.04 4.08
1309 1592 2.032528 CCAGCTCCCGAAGTTGCA 59.967 61.111 0.00 0.00 35.04 4.08
1320 1603 4.659986 TCGTAGAGGACCCAGCTC 57.340 61.111 0.00 0.00 0.00 4.09
1332 1615 1.443872 GTCGTGGTGGTGCTCGTAG 60.444 63.158 0.00 0.00 0.00 3.51
1353 1636 2.264794 CGCCTGTAGGTGTGGTCC 59.735 66.667 3.30 0.00 40.69 4.46
1354 1637 1.080025 GTCGCCTGTAGGTGTGGTC 60.080 63.158 10.98 0.00 45.57 4.02
1357 1640 2.126071 CCGTCGCCTGTAGGTGTG 60.126 66.667 10.98 5.65 45.57 3.82
1359 1642 2.126071 CACCGTCGCCTGTAGGTG 60.126 66.667 5.11 5.11 46.52 4.00
1361 1644 3.296709 AAGCACCGTCGCCTGTAGG 62.297 63.158 0.00 0.00 38.53 3.18
1371 1654 1.635663 GATTACGCAGCAAGCACCGT 61.636 55.000 12.96 12.96 46.13 4.83
1374 1657 1.060937 CGGATTACGCAGCAAGCAC 59.939 57.895 0.00 0.00 46.13 4.40
1392 1675 0.179081 GTATGGTGGCTCCGGAGAAC 60.179 60.000 35.69 28.31 39.52 3.01
1401 1684 1.134521 CACGGTATGTGTATGGTGGCT 60.135 52.381 0.00 0.00 43.88 4.75
1467 1750 1.125021 GACGAGCACACGATCAACTTG 59.875 52.381 5.12 0.00 37.03 3.16
1589 1875 4.789012 AAGGCAATGTCCTTGTATGTTG 57.211 40.909 7.89 0.00 44.36 3.33
1593 1879 4.837860 TGGAAAAAGGCAATGTCCTTGTAT 59.162 37.500 9.15 1.01 45.25 2.29
1649 1935 2.092753 TCATGGTGATGAAGGAAGAGCC 60.093 50.000 0.00 0.00 35.55 4.70
1673 1959 2.432628 GCTCGACTTGACCACCCG 60.433 66.667 0.00 0.00 0.00 5.28
1678 1964 1.929836 GATGACATGCTCGACTTGACC 59.070 52.381 0.00 2.09 0.00 4.02
1728 2014 1.272781 GACAATCGTCAGGAAGCTCG 58.727 55.000 0.00 0.00 42.13 5.03
1794 2080 2.891941 TTCCCCATCGCACCATCAGC 62.892 60.000 0.00 0.00 0.00 4.26
1836 2122 3.603770 CGTGATCAATTGCCGTCTTTTTC 59.396 43.478 0.00 0.00 0.00 2.29
1857 2143 0.672401 ACACGTCCAACCTAATGCCG 60.672 55.000 0.00 0.00 0.00 5.69
1884 2170 4.948847 ACCACTGCTTTTTCTCAAAATCC 58.051 39.130 0.00 0.00 31.28 3.01
1899 2185 1.374758 CTTGACCTCCGACCACTGC 60.375 63.158 0.00 0.00 0.00 4.40
1942 2228 1.677217 CCTAGAGCCTGTTCTGCCAAC 60.677 57.143 0.00 0.00 0.00 3.77
1991 2277 1.076332 CACACGGTTCCCTCGAAATC 58.924 55.000 0.00 0.00 0.00 2.17
2013 2299 3.699411 TTCCATTCAAGGCCCAAAATG 57.301 42.857 0.00 6.87 0.00 2.32
2047 2333 1.730612 CATAGAGCTACCATGCGCATG 59.269 52.381 37.55 37.55 38.13 4.06
2048 2334 1.345741 ACATAGAGCTACCATGCGCAT 59.654 47.619 19.28 19.28 38.13 4.73
2091 2377 6.317893 TCTTGACGTCATACACAAGATAGCTA 59.682 38.462 20.80 0.00 42.05 3.32
2175 2461 1.704628 TCACAAGGGAAGAGCCATTCA 59.295 47.619 1.40 0.00 38.95 2.57
2444 6768 6.223852 GTCCAGTAGTCTTTTCTTGATGACA 58.776 40.000 0.00 0.00 32.41 3.58
2522 6854 4.884668 AACTAAAGTTGTCATCCTCGGA 57.115 40.909 0.00 0.00 36.80 4.55
2544 6876 4.558538 ACAGAAAGTTGACATGCTTCAC 57.441 40.909 0.00 0.00 0.00 3.18
2606 6938 6.523201 GTGCTTACAACTAAAATTGACATCCG 59.477 38.462 0.00 0.00 33.57 4.18
2607 6939 6.523201 CGTGCTTACAACTAAAATTGACATCC 59.477 38.462 0.00 0.00 33.57 3.51
2609 6941 6.378582 CCGTGCTTACAACTAAAATTGACAT 58.621 36.000 0.00 0.00 33.57 3.06
2610 6942 5.753744 CCGTGCTTACAACTAAAATTGACA 58.246 37.500 0.00 0.00 33.57 3.58
2611 6943 4.615541 GCCGTGCTTACAACTAAAATTGAC 59.384 41.667 0.00 0.00 33.57 3.18
2733 7066 3.536956 TTTTAATCTCTGTCGGGCGAT 57.463 42.857 0.00 0.00 0.00 4.58
2737 7070 4.342772 CGCAATTTTTAATCTCTGTCGGG 58.657 43.478 0.00 0.00 0.00 5.14
2761 7094 4.621886 GTGCTTTTTGTTACGTTTGGTTCA 59.378 37.500 0.00 0.00 0.00 3.18
2842 7175 7.011857 GTGAATATCTCTGTCATGAGGGAAAAC 59.988 40.741 0.00 0.00 34.98 2.43
2949 7282 3.006217 GCAAATCCTCTGCCTCAGTTTTT 59.994 43.478 0.00 0.00 33.51 1.94
2964 7297 6.266103 TCTGAATTAATGGATGAGGCAAATCC 59.734 38.462 10.63 10.63 43.44 3.01
3017 7350 1.423584 TGACGGGCTATGATGTGGAT 58.576 50.000 0.00 0.00 0.00 3.41
3073 7407 1.450848 CACCTGAGCGCCATCATGT 60.451 57.895 2.29 2.37 0.00 3.21
3113 7447 0.758734 TCCAGGACAAGGCCATATCG 59.241 55.000 5.01 0.00 0.00 2.92
3114 7448 2.373169 TCATCCAGGACAAGGCCATATC 59.627 50.000 5.01 0.00 0.00 1.63
3115 7449 2.374504 CTCATCCAGGACAAGGCCATAT 59.625 50.000 5.01 0.00 0.00 1.78
3117 7451 0.549950 CTCATCCAGGACAAGGCCAT 59.450 55.000 5.01 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.