Multiple sequence alignment - TraesCS7D01G213700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G213700 chr7D 100.000 6460 0 0 1 6460 173018099 173024558 0.000000e+00 11930.0
1 TraesCS7D01G213700 chr7A 96.343 5032 115 30 774 5763 175245832 175240828 0.000000e+00 8209.0
2 TraesCS7D01G213700 chr7A 85.034 735 99 8 3949 4678 23904342 23903614 0.000000e+00 737.0
3 TraesCS7D01G213700 chr7A 84.647 736 102 8 3949 4679 24104004 24103275 0.000000e+00 723.0
4 TraesCS7D01G213700 chr7A 85.756 344 43 6 4339 4679 23796094 23795754 6.160000e-95 359.0
5 TraesCS7D01G213700 chr7A 86.186 333 37 5 6006 6337 175240036 175239712 1.030000e-92 351.0
6 TraesCS7D01G213700 chr7A 94.118 187 10 1 1932 2117 679086921 679086735 3.810000e-72 283.0
7 TraesCS7D01G213700 chr7A 88.945 199 18 4 1919 2114 115736246 115736443 6.470000e-60 243.0
8 TraesCS7D01G213700 chr7A 90.116 172 15 2 950 1120 175245595 175245425 8.430000e-54 222.0
9 TraesCS7D01G213700 chr7A 86.321 212 19 10 1932 2138 497685630 497685836 8.430000e-54 222.0
10 TraesCS7D01G213700 chr7A 92.969 128 5 3 5886 6012 175240190 175240066 3.980000e-42 183.0
11 TraesCS7D01G213700 chr7A 100.000 30 0 0 5852 5881 175240206 175240177 1.000000e-03 56.5
12 TraesCS7D01G213700 chr6A 94.968 775 38 1 3 777 13616072 13615299 0.000000e+00 1214.0
13 TraesCS7D01G213700 chr6A 87.544 281 23 6 3217 3486 610291497 610291776 1.350000e-81 315.0
14 TraesCS7D01G213700 chr6A 95.604 182 6 2 1934 2114 613477948 613478128 2.280000e-74 291.0
15 TraesCS7D01G213700 chr6A 88.506 174 13 3 3016 3182 610291325 610291498 3.050000e-48 204.0
16 TraesCS7D01G213700 chr4A 94.581 775 42 0 3 777 684649670 684650444 0.000000e+00 1199.0
17 TraesCS7D01G213700 chr7B 94.581 775 40 1 3 777 591141726 591140954 0.000000e+00 1197.0
18 TraesCS7D01G213700 chr7B 94.452 775 41 1 3 777 591213059 591212287 0.000000e+00 1192.0
19 TraesCS7D01G213700 chr7B 84.427 655 82 13 4058 4696 630359137 630358487 1.530000e-175 627.0
20 TraesCS7D01G213700 chr5A 93.419 775 51 0 3 777 140892373 140893147 0.000000e+00 1149.0
21 TraesCS7D01G213700 chr5A 85.560 464 38 5 6022 6458 357907484 357907023 5.900000e-125 459.0
22 TraesCS7D01G213700 chr5A 81.818 385 48 16 4220 4593 674370116 674369743 2.930000e-78 303.0
23 TraesCS7D01G213700 chr5A 79.630 324 44 16 6029 6340 602722671 602722358 5.070000e-51 213.0
24 TraesCS7D01G213700 chr2B 92.318 742 56 1 36 777 403096291 403095551 0.000000e+00 1053.0
25 TraesCS7D01G213700 chr2B 78.932 337 58 12 6022 6352 669330897 669330568 3.920000e-52 217.0
26 TraesCS7D01G213700 chr5B 91.779 742 58 2 36 777 438027898 438028636 0.000000e+00 1029.0
27 TraesCS7D01G213700 chr5B 86.441 413 49 7 3954 4361 711989405 711989815 4.600000e-121 446.0
28 TraesCS7D01G213700 chr1B 91.644 742 58 3 36 777 531637207 531637944 0.000000e+00 1024.0
29 TraesCS7D01G213700 chr1B 91.814 733 59 1 45 777 316265167 316264436 0.000000e+00 1020.0
30 TraesCS7D01G213700 chr1B 93.407 91 5 1 6369 6459 425602208 425602119 4.060000e-27 134.0
31 TraesCS7D01G213700 chr1B 93.103 87 6 0 6374 6460 560783766 560783680 1.890000e-25 128.0
32 TraesCS7D01G213700 chr6D 87.858 733 72 7 3016 3731 463648933 463649665 0.000000e+00 845.0
33 TraesCS7D01G213700 chr6D 85.627 327 33 6 2410 2722 463648514 463648840 1.340000e-86 331.0
34 TraesCS7D01G213700 chr6D 88.302 265 23 6 3984 4245 98138851 98139110 1.750000e-80 311.0
35 TraesCS7D01G213700 chr6D 85.075 201 26 3 3732 3929 463658798 463658997 1.100000e-47 202.0
36 TraesCS7D01G213700 chr6D 86.842 152 15 4 1595 1743 463646807 463646956 1.440000e-36 165.0
37 TraesCS7D01G213700 chr2A 82.283 762 96 17 3950 4696 363367736 363366999 1.980000e-174 623.0
38 TraesCS7D01G213700 chr2A 84.733 393 52 7 3965 4352 32946028 32946417 2.830000e-103 387.0
39 TraesCS7D01G213700 chr2A 89.944 179 16 2 1930 2106 218122247 218122425 5.040000e-56 230.0
40 TraesCS7D01G213700 chr1A 83.084 668 88 19 4047 4696 512197296 512196636 9.330000e-163 584.0
41 TraesCS7D01G213700 chr3B 88.778 401 35 3 4308 4698 176785276 176785676 3.500000e-132 483.0
42 TraesCS7D01G213700 chr3B 93.458 321 19 2 3949 4267 176784952 176785272 5.860000e-130 475.0
43 TraesCS7D01G213700 chr3B 80.917 545 67 18 4160 4693 504963057 504963575 4.690000e-106 396.0
44 TraesCS7D01G213700 chr3B 78.306 484 51 20 6022 6459 252597542 252598017 4.970000e-66 263.0
45 TraesCS7D01G213700 chr3B 82.946 129 16 5 3941 4065 504962745 504962871 1.900000e-20 111.0
46 TraesCS7D01G213700 chrUn 94.652 187 9 1 1932 2117 360043103 360042917 8.200000e-74 289.0
47 TraesCS7D01G213700 chr2D 98.101 158 3 0 1931 2088 318561594 318561751 6.380000e-70 276.0
48 TraesCS7D01G213700 chr2D 79.580 333 46 17 6020 6340 564101034 564101356 1.090000e-52 219.0
49 TraesCS7D01G213700 chr2D 78.313 332 59 12 6022 6346 560608565 560608890 1.100000e-47 202.0
50 TraesCS7D01G213700 chr2D 78.078 333 58 13 6022 6346 314369494 314369819 5.110000e-46 196.0
51 TraesCS7D01G213700 chr4D 78.586 481 51 22 6023 6459 298542842 298543314 2.970000e-68 270.0
52 TraesCS7D01G213700 chr4D 89.130 184 17 3 1932 2113 385734011 385733829 6.520000e-55 226.0
53 TraesCS7D01G213700 chr4D 76.068 468 76 19 6026 6460 343949993 343949529 1.820000e-50 211.0
54 TraesCS7D01G213700 chr5D 78.670 361 59 17 6022 6374 508271967 508271617 2.340000e-54 224.0
55 TraesCS7D01G213700 chr1D 79.104 335 60 9 6022 6352 92058893 92058565 8.430000e-54 222.0
56 TraesCS7D01G213700 chr1D 74.268 478 76 20 6021 6460 373066418 373065950 2.410000e-34 158.0
57 TraesCS7D01G213700 chr3D 96.591 88 2 1 6369 6456 609165386 609165300 1.880000e-30 145.0
58 TraesCS7D01G213700 chr6B 73.348 454 80 13 6043 6460 663646210 663645762 5.260000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G213700 chr7D 173018099 173024558 6459 False 11930.0 11930 100.000000 1 6460 1 chr7D.!!$F1 6459
1 TraesCS7D01G213700 chr7A 175239712 175245832 6120 True 1804.3 8209 93.122800 774 6337 5 chr7A.!!$R5 5563
2 TraesCS7D01G213700 chr7A 23903614 23904342 728 True 737.0 737 85.034000 3949 4678 1 chr7A.!!$R2 729
3 TraesCS7D01G213700 chr7A 24103275 24104004 729 True 723.0 723 84.647000 3949 4679 1 chr7A.!!$R3 730
4 TraesCS7D01G213700 chr6A 13615299 13616072 773 True 1214.0 1214 94.968000 3 777 1 chr6A.!!$R1 774
5 TraesCS7D01G213700 chr4A 684649670 684650444 774 False 1199.0 1199 94.581000 3 777 1 chr4A.!!$F1 774
6 TraesCS7D01G213700 chr7B 591140954 591141726 772 True 1197.0 1197 94.581000 3 777 1 chr7B.!!$R1 774
7 TraesCS7D01G213700 chr7B 591212287 591213059 772 True 1192.0 1192 94.452000 3 777 1 chr7B.!!$R2 774
8 TraesCS7D01G213700 chr7B 630358487 630359137 650 True 627.0 627 84.427000 4058 4696 1 chr7B.!!$R3 638
9 TraesCS7D01G213700 chr5A 140892373 140893147 774 False 1149.0 1149 93.419000 3 777 1 chr5A.!!$F1 774
10 TraesCS7D01G213700 chr2B 403095551 403096291 740 True 1053.0 1053 92.318000 36 777 1 chr2B.!!$R1 741
11 TraesCS7D01G213700 chr5B 438027898 438028636 738 False 1029.0 1029 91.779000 36 777 1 chr5B.!!$F1 741
12 TraesCS7D01G213700 chr1B 531637207 531637944 737 False 1024.0 1024 91.644000 36 777 1 chr1B.!!$F1 741
13 TraesCS7D01G213700 chr1B 316264436 316265167 731 True 1020.0 1020 91.814000 45 777 1 chr1B.!!$R1 732
14 TraesCS7D01G213700 chr6D 463646807 463649665 2858 False 447.0 845 86.775667 1595 3731 3 chr6D.!!$F3 2136
15 TraesCS7D01G213700 chr2A 363366999 363367736 737 True 623.0 623 82.283000 3950 4696 1 chr2A.!!$R1 746
16 TraesCS7D01G213700 chr1A 512196636 512197296 660 True 584.0 584 83.084000 4047 4696 1 chr1A.!!$R1 649
17 TraesCS7D01G213700 chr3B 176784952 176785676 724 False 479.0 483 91.118000 3949 4698 2 chr3B.!!$F2 749
18 TraesCS7D01G213700 chr3B 504962745 504963575 830 False 253.5 396 81.931500 3941 4693 2 chr3B.!!$F3 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 560 0.976641 AAGATCGAAGGTGCCACAGA 59.023 50.0 0.0 0.0 0.00 3.41 F
1047 1051 1.134438 ACAAACCAGGGGACTCCTCC 61.134 60.0 0.0 0.0 46.12 4.30 F
2285 3648 0.322975 TGCTTCTTCCTCTCTGCCAC 59.677 55.0 0.0 0.0 0.00 5.01 F
3841 5281 0.971386 ATGCAAAAGCCTTGGGTGAG 59.029 50.0 0.0 0.0 0.00 3.51 F
5116 6743 0.322456 TGCAGGGTCGAATTCCTTGG 60.322 55.0 0.0 0.0 33.51 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1397 1401 0.514691 GAGAAAAGACGGCACTGCAG 59.485 55.0 13.48 13.48 0.00 4.41 R
2953 4345 0.395312 GGCGGCTAATAGCTACCCAA 59.605 55.0 12.41 0.00 41.99 4.12 R
3861 5301 0.618981 AAAAGTTCGGCCTAGGAGGG 59.381 55.0 14.75 0.00 35.37 4.30 R
5333 6960 0.107848 TAGCCTTAGCCAGTTTCGCC 60.108 55.0 0.00 0.00 41.25 5.54 R
6410 8634 0.036388 TGAAAGTGCTCCGGATCCAC 60.036 55.0 21.53 21.53 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.941812 CAACCACCGCAGACTTCAC 59.058 57.895 0.00 0.00 0.00 3.18
42 43 2.650196 CCAACCCACACCATTGCG 59.350 61.111 0.00 0.00 0.00 4.85
105 106 3.667497 TGCTACACCTCTGAGAGTTTG 57.333 47.619 8.88 7.66 0.00 2.93
214 215 7.147742 ACCAATAAACAAACATCACTCCAGTTT 60.148 33.333 0.00 0.00 36.00 2.66
230 231 3.686726 CCAGTTTAGAGTAGCAAGGCAAG 59.313 47.826 0.00 0.00 0.00 4.01
393 394 3.141398 TCTTCCAGTTGAATGAGTGCAC 58.859 45.455 9.40 9.40 31.06 4.57
480 483 8.088365 AGCAACAACTCAAAAGGATAATTTACC 58.912 33.333 0.00 0.00 0.00 2.85
557 560 0.976641 AAGATCGAAGGTGCCACAGA 59.023 50.000 0.00 0.00 0.00 3.41
634 637 1.978454 AGGAGAAGCTAATGCCATGC 58.022 50.000 0.00 0.00 40.80 4.06
666 669 5.590259 ACCAGCATATGAAAGACCAATGTAC 59.410 40.000 6.97 0.00 0.00 2.90
669 672 7.498900 CCAGCATATGAAAGACCAATGTACTAA 59.501 37.037 6.97 0.00 0.00 2.24
818 821 6.851222 TTCACTCATCAAAAGAAGTGTCTC 57.149 37.500 0.00 0.00 30.70 3.36
821 824 6.823182 TCACTCATCAAAAGAAGTGTCTCAAA 59.177 34.615 0.00 0.00 30.70 2.69
822 825 7.336679 TCACTCATCAAAAGAAGTGTCTCAAAA 59.663 33.333 0.00 0.00 30.70 2.44
823 826 7.642978 CACTCATCAAAAGAAGTGTCTCAAAAG 59.357 37.037 0.00 0.00 30.70 2.27
824 827 7.554118 ACTCATCAAAAGAAGTGTCTCAAAAGA 59.446 33.333 0.00 0.00 30.70 2.52
825 828 8.279970 TCATCAAAAGAAGTGTCTCAAAAGAA 57.720 30.769 0.00 0.00 30.70 2.52
851 854 8.479313 AAAACTCATCAAAAGGAAAACAAGAC 57.521 30.769 0.00 0.00 0.00 3.01
895 898 3.090532 CCTTTCCCCTCCCCTCCG 61.091 72.222 0.00 0.00 0.00 4.63
1040 1044 2.738480 CGACGACAAACCAGGGGA 59.262 61.111 0.00 0.00 0.00 4.81
1047 1051 1.134438 ACAAACCAGGGGACTCCTCC 61.134 60.000 0.00 0.00 46.12 4.30
1106 1110 2.358247 CGACGACAAACCAGGGGG 60.358 66.667 0.00 0.00 41.29 5.40
1281 1285 6.156949 AGCAAATCCCTGTCTACAAAGATAGA 59.843 38.462 1.21 0.00 42.07 1.98
1364 1368 3.878667 CTTCCCCGGCCTCATCCC 61.879 72.222 0.00 0.00 0.00 3.85
1463 1467 8.291191 TGTTTTGTTGAATGATATGGCTATGA 57.709 30.769 0.00 0.00 0.00 2.15
1472 1476 3.448660 TGATATGGCTATGATCCTGACCG 59.551 47.826 0.00 0.00 0.00 4.79
1490 1494 6.057321 TGACCGAACTTAATTGAATAGGGT 57.943 37.500 0.00 0.00 0.00 4.34
1557 1561 2.491693 CACTCCAAACCCGCAATATGTT 59.508 45.455 0.00 0.00 0.00 2.71
2109 3472 5.991933 ACATATAGATGTGCCCTAGACAG 57.008 43.478 1.31 0.00 44.90 3.51
2242 3605 4.261801 AGTTGCTTGACAGTACAACACTT 58.738 39.130 15.41 0.00 43.74 3.16
2285 3648 0.322975 TGCTTCTTCCTCTCTGCCAC 59.677 55.000 0.00 0.00 0.00 5.01
2333 3702 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
2556 3939 4.563580 GGAATTGGAGCTCAACACTACTCA 60.564 45.833 17.19 0.00 38.31 3.41
2716 4101 5.583854 ACAAGCTATTGACTCACATCATGTC 59.416 40.000 0.00 0.00 38.83 3.06
2818 4203 9.191995 CGAGGCTACATTAATTTTGAAGTTTTT 57.808 29.630 0.00 0.00 0.00 1.94
2953 4345 5.128663 ACTTGACCCTTAACTTGTGCAATTT 59.871 36.000 0.00 0.00 0.00 1.82
2954 4346 5.606348 TGACCCTTAACTTGTGCAATTTT 57.394 34.783 0.00 0.00 0.00 1.82
2956 4348 4.702831 ACCCTTAACTTGTGCAATTTTGG 58.297 39.130 0.00 0.00 0.00 3.28
2957 4349 4.064388 CCCTTAACTTGTGCAATTTTGGG 58.936 43.478 0.00 9.46 0.00 4.12
2958 4350 4.444164 CCCTTAACTTGTGCAATTTTGGGT 60.444 41.667 0.00 0.00 0.00 4.51
2959 4351 5.221541 CCCTTAACTTGTGCAATTTTGGGTA 60.222 40.000 0.00 0.00 0.00 3.69
2960 4352 5.925969 CCTTAACTTGTGCAATTTTGGGTAG 59.074 40.000 0.00 0.00 0.00 3.18
2961 4353 3.385193 ACTTGTGCAATTTTGGGTAGC 57.615 42.857 0.00 0.00 0.00 3.58
2962 4354 2.965147 ACTTGTGCAATTTTGGGTAGCT 59.035 40.909 0.00 0.00 0.00 3.32
2963 4355 4.148838 ACTTGTGCAATTTTGGGTAGCTA 58.851 39.130 0.00 0.00 0.00 3.32
2964 4356 4.772100 ACTTGTGCAATTTTGGGTAGCTAT 59.228 37.500 0.00 0.00 0.00 2.97
3346 4776 2.091885 TGATCTTTTGGGGGTATGCTCC 60.092 50.000 0.00 0.00 0.00 4.70
3355 4785 1.237458 GGTATGCTCCCTCCCTCCT 59.763 63.158 0.00 0.00 0.00 3.69
3692 5132 5.746721 GCTTTGAGTTTTACGGTGTTCATTT 59.253 36.000 0.00 0.00 0.00 2.32
3703 5143 4.744631 ACGGTGTTCATTTCTCAAATTTGC 59.255 37.500 13.54 0.00 0.00 3.68
3746 5186 2.414994 ATGCCTTGTCTGTGGAGATG 57.585 50.000 0.00 0.00 0.00 2.90
3841 5281 0.971386 ATGCAAAAGCCTTGGGTGAG 59.029 50.000 0.00 0.00 0.00 3.51
3861 5301 8.312564 GGGTGAGGAGGTATGATAATTTACTAC 58.687 40.741 0.00 0.00 0.00 2.73
3869 5309 9.771140 AGGTATGATAATTTACTACCCTCCTAG 57.229 37.037 0.00 0.00 33.76 3.02
3919 5359 2.585247 GTGGGGACTGCGCGATAC 60.585 66.667 12.10 0.00 0.00 2.24
4158 5724 9.660180 AACAAGCCTTTTACTATGAAAAACAAA 57.340 25.926 0.00 0.00 0.00 2.83
4292 5864 5.511363 AGGTACATTACTGCAGAGAGTAGT 58.489 41.667 23.35 12.84 45.62 2.73
4749 6369 6.194235 ACCAACAATAATTGCCATCCTAAGA 58.806 36.000 0.00 0.00 0.00 2.10
4810 6437 8.964420 AAAATGAGACCATACAACAATTTACG 57.036 30.769 0.00 0.00 31.59 3.18
4903 6530 7.402862 ACATGGTTTATAGCCACTAAGTTTCT 58.597 34.615 0.00 0.00 39.03 2.52
4905 6532 9.046296 CATGGTTTATAGCCACTAAGTTTCTAG 57.954 37.037 0.89 0.00 39.03 2.43
4912 6539 4.938226 AGCCACTAAGTTTCTAGCAACATC 59.062 41.667 8.00 0.00 0.00 3.06
4931 6558 3.428413 TCAGTATGGCATCATGATGGG 57.572 47.619 31.62 12.56 35.35 4.00
5055 6682 8.306761 CAAACATCTTAGGCCAATTTAAAGACT 58.693 33.333 5.01 0.00 0.00 3.24
5059 6686 3.825908 AGGCCAATTTAAAGACTGGGA 57.174 42.857 5.01 0.00 0.00 4.37
5080 6707 7.582719 TGGGATTTACCTACTATGAAAGCATT 58.417 34.615 0.00 0.00 38.98 3.56
5116 6743 0.322456 TGCAGGGTCGAATTCCTTGG 60.322 55.000 0.00 0.00 33.51 3.61
5117 6744 1.657751 GCAGGGTCGAATTCCTTGGC 61.658 60.000 0.00 2.24 33.51 4.52
5254 6881 1.619977 GGAGGAAGCTAGGGTGAGACA 60.620 57.143 0.00 0.00 0.00 3.41
5297 6924 4.954875 AGGATATCAAGAAGGAGAAAGCG 58.045 43.478 4.83 0.00 0.00 4.68
5333 6960 2.478831 GCTATCAAGGAGGAGAAAGCG 58.521 52.381 0.00 0.00 0.00 4.68
5339 6966 1.375523 GGAGGAGAAAGCGGCGAAA 60.376 57.895 12.98 0.00 0.00 3.46
5444 7074 2.361438 GAGCGCCAAGTATGTAGTACCT 59.639 50.000 2.29 0.00 33.58 3.08
5462 7092 5.651139 AGTACCTGCTAGACGAAAATGAGTA 59.349 40.000 0.00 0.00 0.00 2.59
5473 7103 6.533367 AGACGAAAATGAGTAGCTTCTCAATC 59.467 38.462 24.50 20.06 45.65 2.67
5491 7121 4.081142 TCAATCCATGGTTACTGTCGATGT 60.081 41.667 12.58 0.00 0.00 3.06
5499 7129 4.167268 GGTTACTGTCGATGTTGTCTCTC 58.833 47.826 0.00 0.00 0.00 3.20
5501 7131 5.462405 GTTACTGTCGATGTTGTCTCTCTT 58.538 41.667 0.00 0.00 0.00 2.85
5508 7138 5.007034 TCGATGTTGTCTCTCTTTCTCTCT 58.993 41.667 0.00 0.00 0.00 3.10
5509 7139 5.123186 TCGATGTTGTCTCTCTTTCTCTCTC 59.877 44.000 0.00 0.00 0.00 3.20
5510 7140 5.123820 CGATGTTGTCTCTCTTTCTCTCTCT 59.876 44.000 0.00 0.00 0.00 3.10
5511 7141 5.703978 TGTTGTCTCTCTTTCTCTCTCTG 57.296 43.478 0.00 0.00 0.00 3.35
5512 7142 5.136828 TGTTGTCTCTCTTTCTCTCTCTGT 58.863 41.667 0.00 0.00 0.00 3.41
5513 7143 5.240623 TGTTGTCTCTCTTTCTCTCTCTGTC 59.759 44.000 0.00 0.00 0.00 3.51
5514 7144 5.241403 TGTCTCTCTTTCTCTCTCTGTCT 57.759 43.478 0.00 0.00 0.00 3.41
5515 7145 5.245531 TGTCTCTCTTTCTCTCTCTGTCTC 58.754 45.833 0.00 0.00 0.00 3.36
5516 7146 5.013079 TGTCTCTCTTTCTCTCTCTGTCTCT 59.987 44.000 0.00 0.00 0.00 3.10
5517 7147 5.582665 GTCTCTCTTTCTCTCTCTGTCTCTC 59.417 48.000 0.00 0.00 0.00 3.20
5518 7148 5.485353 TCTCTCTTTCTCTCTCTGTCTCTCT 59.515 44.000 0.00 0.00 0.00 3.10
5519 7149 5.734720 TCTCTTTCTCTCTCTGTCTCTCTC 58.265 45.833 0.00 0.00 0.00 3.20
5578 7208 0.687354 CACACCCCTTAGCAGACACT 59.313 55.000 0.00 0.00 0.00 3.55
5687 7321 6.558009 TGGCTGAAACTAGTTATGTACTACG 58.442 40.000 8.92 0.00 38.33 3.51
5690 7324 6.911511 GCTGAAACTAGTTATGTACTACGAGG 59.088 42.308 8.92 0.00 38.33 4.63
5717 7351 6.115446 TGAAATTCTTCTGCTATCGAACCAT 58.885 36.000 0.00 0.00 32.33 3.55
5719 7353 7.224753 TGAAATTCTTCTGCTATCGAACCATAC 59.775 37.037 0.00 0.00 32.33 2.39
5720 7354 5.592104 TTCTTCTGCTATCGAACCATACA 57.408 39.130 0.00 0.00 0.00 2.29
5721 7355 5.188327 TCTTCTGCTATCGAACCATACAG 57.812 43.478 0.00 0.00 0.00 2.74
5723 7357 4.569761 TCTGCTATCGAACCATACAGTC 57.430 45.455 0.00 0.00 0.00 3.51
5725 7359 3.028130 TGCTATCGAACCATACAGTCCA 58.972 45.455 0.00 0.00 0.00 4.02
5728 7362 3.802948 ATCGAACCATACAGTCCACTC 57.197 47.619 0.00 0.00 0.00 3.51
5740 7374 2.232452 CAGTCCACTCTCCGTCTCAAAT 59.768 50.000 0.00 0.00 0.00 2.32
5769 7701 3.140623 CCTTGGCCCAAGTCAAATTTTG 58.859 45.455 21.65 2.59 37.09 2.44
5786 7718 9.562408 TCAAATTTTGTAGTCTAACCATGTACA 57.438 29.630 8.89 0.00 0.00 2.90
5787 7719 9.825972 CAAATTTTGTAGTCTAACCATGTACAG 57.174 33.333 0.33 0.00 0.00 2.74
5788 7720 9.569122 AAATTTTGTAGTCTAACCATGTACAGT 57.431 29.630 0.33 0.00 0.00 3.55
5790 7722 9.649167 ATTTTGTAGTCTAACCATGTACAGTAC 57.351 33.333 0.33 3.49 0.00 2.73
5791 7723 8.413309 TTTGTAGTCTAACCATGTACAGTACT 57.587 34.615 12.07 0.00 0.00 2.73
5815 8002 9.668497 ACTATATAGGAAAAAGAGGTCAAACAC 57.332 33.333 14.25 0.00 0.00 3.32
5833 8020 4.617875 GCACACCAGCGGTCTTAT 57.382 55.556 0.00 0.00 31.02 1.73
5834 8021 2.854522 GCACACCAGCGGTCTTATT 58.145 52.632 0.00 0.00 31.02 1.40
5835 8022 2.018542 GCACACCAGCGGTCTTATTA 57.981 50.000 0.00 0.00 31.02 0.98
5836 8023 2.352388 GCACACCAGCGGTCTTATTAA 58.648 47.619 0.00 0.00 31.02 1.40
5837 8024 2.351726 GCACACCAGCGGTCTTATTAAG 59.648 50.000 0.00 0.00 31.02 1.85
5838 8025 3.596214 CACACCAGCGGTCTTATTAAGT 58.404 45.455 3.45 0.00 31.02 2.24
5839 8026 4.000988 CACACCAGCGGTCTTATTAAGTT 58.999 43.478 3.45 0.00 31.02 2.66
5840 8027 4.000988 ACACCAGCGGTCTTATTAAGTTG 58.999 43.478 3.45 0.00 31.02 3.16
5841 8028 4.000988 CACCAGCGGTCTTATTAAGTTGT 58.999 43.478 3.45 0.00 31.02 3.32
5842 8029 4.000988 ACCAGCGGTCTTATTAAGTTGTG 58.999 43.478 3.45 0.00 0.00 3.33
5843 8030 3.181510 CCAGCGGTCTTATTAAGTTGTGC 60.182 47.826 3.45 4.54 0.00 4.57
5844 8031 2.671396 AGCGGTCTTATTAAGTTGTGCG 59.329 45.455 3.45 0.00 0.00 5.34
5845 8032 2.669434 GCGGTCTTATTAAGTTGTGCGA 59.331 45.455 3.45 0.00 0.00 5.10
5846 8033 3.241995 GCGGTCTTATTAAGTTGTGCGAG 60.242 47.826 3.45 0.00 0.00 5.03
5847 8034 4.171005 CGGTCTTATTAAGTTGTGCGAGA 58.829 43.478 3.45 0.00 0.00 4.04
5848 8035 4.804139 CGGTCTTATTAAGTTGTGCGAGAT 59.196 41.667 3.45 0.00 0.00 2.75
5849 8036 5.975344 CGGTCTTATTAAGTTGTGCGAGATA 59.025 40.000 3.45 0.00 0.00 1.98
5850 8037 6.474427 CGGTCTTATTAAGTTGTGCGAGATAA 59.526 38.462 3.45 0.00 0.00 1.75
5881 8068 5.080337 TGTCACACTTCTCCACTTATCTCT 58.920 41.667 0.00 0.00 0.00 3.10
5882 8069 5.184096 TGTCACACTTCTCCACTTATCTCTC 59.816 44.000 0.00 0.00 0.00 3.20
5883 8070 4.707448 TCACACTTCTCCACTTATCTCTCC 59.293 45.833 0.00 0.00 0.00 3.71
5884 8071 4.464244 CACACTTCTCCACTTATCTCTCCA 59.536 45.833 0.00 0.00 0.00 3.86
5885 8072 5.128499 CACACTTCTCCACTTATCTCTCCAT 59.872 44.000 0.00 0.00 0.00 3.41
5886 8073 5.362430 ACACTTCTCCACTTATCTCTCCATC 59.638 44.000 0.00 0.00 0.00 3.51
5887 8074 5.598005 CACTTCTCCACTTATCTCTCCATCT 59.402 44.000 0.00 0.00 0.00 2.90
5888 8075 5.833131 ACTTCTCCACTTATCTCTCCATCTC 59.167 44.000 0.00 0.00 0.00 2.75
5889 8076 4.735369 TCTCCACTTATCTCTCCATCTCC 58.265 47.826 0.00 0.00 0.00 3.71
5890 8077 4.168871 TCTCCACTTATCTCTCCATCTCCA 59.831 45.833 0.00 0.00 0.00 3.86
5891 8078 5.085275 TCCACTTATCTCTCCATCTCCAT 57.915 43.478 0.00 0.00 0.00 3.41
5892 8079 5.471424 TCCACTTATCTCTCCATCTCCATT 58.529 41.667 0.00 0.00 0.00 3.16
5893 8080 6.624297 TCCACTTATCTCTCCATCTCCATTA 58.376 40.000 0.00 0.00 0.00 1.90
5894 8081 7.251936 TCCACTTATCTCTCCATCTCCATTAT 58.748 38.462 0.00 0.00 0.00 1.28
5895 8082 7.398618 TCCACTTATCTCTCCATCTCCATTATC 59.601 40.741 0.00 0.00 0.00 1.75
5896 8083 7.399765 CCACTTATCTCTCCATCTCCATTATCT 59.600 40.741 0.00 0.00 0.00 1.98
5897 8084 8.469200 CACTTATCTCTCCATCTCCATTATCTC 58.531 40.741 0.00 0.00 0.00 2.75
5898 8085 8.401105 ACTTATCTCTCCATCTCCATTATCTCT 58.599 37.037 0.00 0.00 0.00 3.10
5899 8086 9.258629 CTTATCTCTCCATCTCCATTATCTCTT 57.741 37.037 0.00 0.00 0.00 2.85
5900 8087 7.722949 ATCTCTCCATCTCCATTATCTCTTC 57.277 40.000 0.00 0.00 0.00 2.87
5920 8107 3.851128 GCCTGCCCCTCTCGTACC 61.851 72.222 0.00 0.00 0.00 3.34
5968 8155 0.322456 TCCTTGCATACCACTGTGGC 60.322 55.000 26.20 12.79 42.67 5.01
5999 8186 5.591877 AGCATCCTACCATGAAATCTTCAAC 59.408 40.000 0.00 0.00 43.95 3.18
6010 8233 0.254178 ATCTTCAACGCCATCAGCCT 59.746 50.000 0.00 0.00 38.78 4.58
6020 8243 1.747145 CATCAGCCTGGCGAGATCT 59.253 57.895 21.50 0.00 0.00 2.75
6031 8254 3.620488 TGGCGAGATCTGGCTAAATTTT 58.380 40.909 26.15 0.00 34.59 1.82
6032 8255 3.378112 TGGCGAGATCTGGCTAAATTTTG 59.622 43.478 26.15 0.00 34.59 2.44
6039 8262 7.148918 CGAGATCTGGCTAAATTTTGTGTTTTG 60.149 37.037 0.00 0.00 0.00 2.44
6041 8264 8.370182 AGATCTGGCTAAATTTTGTGTTTTGAT 58.630 29.630 0.00 0.00 0.00 2.57
6048 8271 9.650371 GCTAAATTTTGTGTTTTGATCCTTTTC 57.350 29.630 0.00 0.00 0.00 2.29
6073 8296 1.840635 ACTTTAGCTGGATCTGACCCC 59.159 52.381 0.00 0.00 0.00 4.95
6079 8302 0.464452 CTGGATCTGACCCCGGTTAC 59.536 60.000 0.00 0.00 0.00 2.50
6081 8304 0.906775 GGATCTGACCCCGGTTACAA 59.093 55.000 0.00 0.00 0.00 2.41
6111 8334 2.760650 GGGATTTGACCCTTTTGGCTAG 59.239 50.000 0.00 0.00 45.90 3.42
6150 8373 3.384702 GCTTTTGACAGCTTACCGC 57.615 52.632 0.00 0.00 36.79 5.68
6151 8374 0.109735 GCTTTTGACAGCTTACCGCC 60.110 55.000 0.00 0.00 40.39 6.13
6152 8375 0.165944 CTTTTGACAGCTTACCGCCG 59.834 55.000 0.00 0.00 40.39 6.46
6153 8376 1.847890 TTTTGACAGCTTACCGCCGC 61.848 55.000 0.00 0.00 40.39 6.53
6154 8377 2.997952 TTTGACAGCTTACCGCCGCA 62.998 55.000 0.00 0.00 40.39 5.69
6155 8378 3.488090 GACAGCTTACCGCCGCAC 61.488 66.667 0.00 0.00 40.39 5.34
6233 8456 4.519437 GTACCCTACCGCCGTGGC 62.519 72.222 0.00 0.00 43.94 5.01
6255 8478 1.555075 CTTGGCTGTAGGGTAGCAGAA 59.445 52.381 0.00 0.00 42.88 3.02
6258 8481 1.196012 GCTGTAGGGTAGCAGAACCT 58.804 55.000 0.35 0.35 40.81 3.50
6264 8487 1.143401 GGTAGCAGAACCTACCGCC 59.857 63.158 2.91 0.00 45.58 6.13
6289 8512 1.153168 CATGGCGGTAGGTTCCTGG 60.153 63.158 1.12 0.00 0.00 4.45
6312 8535 4.678743 GTTGTGAGGGGTGGGGGC 62.679 72.222 0.00 0.00 0.00 5.80
6337 8561 1.000896 CCCCACCCACTCATTCACC 60.001 63.158 0.00 0.00 0.00 4.02
6338 8562 1.000896 CCCACCCACTCATTCACCC 60.001 63.158 0.00 0.00 0.00 4.61
6339 8563 1.000896 CCACCCACTCATTCACCCC 60.001 63.158 0.00 0.00 0.00 4.95
6340 8564 1.000896 CACCCACTCATTCACCCCC 60.001 63.158 0.00 0.00 0.00 5.40
6341 8565 1.465188 ACCCACTCATTCACCCCCA 60.465 57.895 0.00 0.00 0.00 4.96
6342 8566 0.850883 ACCCACTCATTCACCCCCAT 60.851 55.000 0.00 0.00 0.00 4.00
6343 8567 0.336048 CCCACTCATTCACCCCCATT 59.664 55.000 0.00 0.00 0.00 3.16
6344 8568 1.686115 CCCACTCATTCACCCCCATTC 60.686 57.143 0.00 0.00 0.00 2.67
6345 8569 1.686115 CCACTCATTCACCCCCATTCC 60.686 57.143 0.00 0.00 0.00 3.01
6346 8570 0.631212 ACTCATTCACCCCCATTCCC 59.369 55.000 0.00 0.00 0.00 3.97
6347 8571 0.106015 CTCATTCACCCCCATTCCCC 60.106 60.000 0.00 0.00 0.00 4.81
6348 8572 0.853134 TCATTCACCCCCATTCCCCA 60.853 55.000 0.00 0.00 0.00 4.96
6349 8573 0.265553 CATTCACCCCCATTCCCCAT 59.734 55.000 0.00 0.00 0.00 4.00
6350 8574 1.026173 ATTCACCCCCATTCCCCATT 58.974 50.000 0.00 0.00 0.00 3.16
6351 8575 0.338120 TTCACCCCCATTCCCCATTC 59.662 55.000 0.00 0.00 0.00 2.67
6352 8576 0.554865 TCACCCCCATTCCCCATTCT 60.555 55.000 0.00 0.00 0.00 2.40
6353 8577 0.106015 CACCCCCATTCCCCATTCTC 60.106 60.000 0.00 0.00 0.00 2.87
6354 8578 0.554865 ACCCCCATTCCCCATTCTCA 60.555 55.000 0.00 0.00 0.00 3.27
6355 8579 0.106015 CCCCCATTCCCCATTCTCAC 60.106 60.000 0.00 0.00 0.00 3.51
6356 8580 0.929244 CCCCATTCCCCATTCTCACT 59.071 55.000 0.00 0.00 0.00 3.41
6357 8581 1.133668 CCCCATTCCCCATTCTCACTC 60.134 57.143 0.00 0.00 0.00 3.51
6358 8582 1.849039 CCCATTCCCCATTCTCACTCT 59.151 52.381 0.00 0.00 0.00 3.24
6359 8583 2.243221 CCCATTCCCCATTCTCACTCTT 59.757 50.000 0.00 0.00 0.00 2.85
6360 8584 3.309410 CCCATTCCCCATTCTCACTCTTT 60.309 47.826 0.00 0.00 0.00 2.52
6361 8585 3.950395 CCATTCCCCATTCTCACTCTTTC 59.050 47.826 0.00 0.00 0.00 2.62
6362 8586 3.334583 TTCCCCATTCTCACTCTTTCG 57.665 47.619 0.00 0.00 0.00 3.46
6363 8587 2.536066 TCCCCATTCTCACTCTTTCGA 58.464 47.619 0.00 0.00 0.00 3.71
6364 8588 2.497675 TCCCCATTCTCACTCTTTCGAG 59.502 50.000 0.00 0.00 43.10 4.04
6365 8589 2.275318 CCCATTCTCACTCTTTCGAGC 58.725 52.381 0.00 0.00 41.09 5.03
6366 8590 2.093764 CCCATTCTCACTCTTTCGAGCT 60.094 50.000 0.00 0.00 41.09 4.09
6367 8591 2.928757 CCATTCTCACTCTTTCGAGCTG 59.071 50.000 0.00 0.00 41.09 4.24
6368 8592 3.367806 CCATTCTCACTCTTTCGAGCTGA 60.368 47.826 0.00 0.00 41.09 4.26
6369 8593 4.240888 CATTCTCACTCTTTCGAGCTGAA 58.759 43.478 0.00 0.00 41.09 3.02
6370 8594 3.567576 TCTCACTCTTTCGAGCTGAAG 57.432 47.619 0.00 0.00 41.09 3.02
6371 8595 2.230025 TCTCACTCTTTCGAGCTGAAGG 59.770 50.000 0.00 0.00 41.09 3.46
6372 8596 1.964223 TCACTCTTTCGAGCTGAAGGT 59.036 47.619 0.00 0.00 41.09 3.50
6373 8597 2.029828 TCACTCTTTCGAGCTGAAGGTC 60.030 50.000 0.00 0.00 41.09 3.85
6374 8598 1.273886 ACTCTTTCGAGCTGAAGGTCC 59.726 52.381 0.00 0.00 41.09 4.46
6375 8599 1.548269 CTCTTTCGAGCTGAAGGTCCT 59.452 52.381 0.00 0.00 39.23 3.85
6376 8600 1.546476 TCTTTCGAGCTGAAGGTCCTC 59.454 52.381 0.00 0.00 39.23 3.71
6377 8601 1.548269 CTTTCGAGCTGAAGGTCCTCT 59.452 52.381 0.00 0.00 39.23 3.69
6378 8602 1.178276 TTCGAGCTGAAGGTCCTCTC 58.822 55.000 0.00 0.00 39.23 3.20
6379 8603 0.038310 TCGAGCTGAAGGTCCTCTCA 59.962 55.000 0.00 0.00 39.23 3.27
6380 8604 0.891373 CGAGCTGAAGGTCCTCTCAA 59.109 55.000 0.00 0.00 39.23 3.02
6381 8605 1.273606 CGAGCTGAAGGTCCTCTCAAA 59.726 52.381 0.00 0.00 39.23 2.69
6382 8606 2.093764 CGAGCTGAAGGTCCTCTCAAAT 60.094 50.000 0.00 0.00 39.23 2.32
6383 8607 3.530535 GAGCTGAAGGTCCTCTCAAATC 58.469 50.000 0.00 0.00 36.62 2.17
6384 8608 3.180507 AGCTGAAGGTCCTCTCAAATCT 58.819 45.455 0.00 0.00 0.00 2.40
6385 8609 3.197549 AGCTGAAGGTCCTCTCAAATCTC 59.802 47.826 0.00 0.00 0.00 2.75
6386 8610 3.055530 GCTGAAGGTCCTCTCAAATCTCA 60.056 47.826 0.00 0.00 0.00 3.27
6387 8611 4.502962 CTGAAGGTCCTCTCAAATCTCAC 58.497 47.826 0.00 0.00 0.00 3.51
6388 8612 4.163427 TGAAGGTCCTCTCAAATCTCACT 58.837 43.478 0.00 0.00 0.00 3.41
6389 8613 4.221703 TGAAGGTCCTCTCAAATCTCACTC 59.778 45.833 0.00 0.00 0.00 3.51
6390 8614 3.784178 AGGTCCTCTCAAATCTCACTCA 58.216 45.455 0.00 0.00 0.00 3.41
6391 8615 4.360889 AGGTCCTCTCAAATCTCACTCAT 58.639 43.478 0.00 0.00 0.00 2.90
6392 8616 4.782156 AGGTCCTCTCAAATCTCACTCATT 59.218 41.667 0.00 0.00 0.00 2.57
6393 8617 5.250313 AGGTCCTCTCAAATCTCACTCATTT 59.750 40.000 0.00 0.00 0.00 2.32
6394 8618 5.353678 GGTCCTCTCAAATCTCACTCATTTG 59.646 44.000 0.00 0.00 40.99 2.32
6395 8619 4.940046 TCCTCTCAAATCTCACTCATTTGC 59.060 41.667 1.06 0.00 39.92 3.68
6396 8620 4.942483 CCTCTCAAATCTCACTCATTTGCT 59.058 41.667 1.06 0.00 39.92 3.91
6397 8621 5.415077 CCTCTCAAATCTCACTCATTTGCTT 59.585 40.000 1.06 0.00 39.92 3.91
6398 8622 6.250344 TCTCAAATCTCACTCATTTGCTTG 57.750 37.500 1.06 0.00 39.92 4.01
6399 8623 5.999600 TCTCAAATCTCACTCATTTGCTTGA 59.000 36.000 1.06 0.00 39.92 3.02
6400 8624 6.148976 TCTCAAATCTCACTCATTTGCTTGAG 59.851 38.462 9.43 9.43 46.94 3.02
6401 8625 5.999600 TCAAATCTCACTCATTTGCTTGAGA 59.000 36.000 15.67 11.17 46.43 3.27
6405 8629 6.250344 TCTCACTCATTTGCTTGAGATTTG 57.750 37.500 15.67 6.72 44.88 2.32
6406 8630 5.766670 TCTCACTCATTTGCTTGAGATTTGT 59.233 36.000 15.67 0.00 44.88 2.83
6407 8631 6.005583 TCACTCATTTGCTTGAGATTTGTC 57.994 37.500 15.67 0.00 44.88 3.18
6408 8632 5.048504 TCACTCATTTGCTTGAGATTTGTCC 60.049 40.000 15.67 0.00 44.88 4.02
6409 8633 4.083110 ACTCATTTGCTTGAGATTTGTCCG 60.083 41.667 15.67 0.00 44.88 4.79
6410 8634 3.191162 TCATTTGCTTGAGATTTGTCCGG 59.809 43.478 0.00 0.00 0.00 5.14
6411 8635 2.270352 TTGCTTGAGATTTGTCCGGT 57.730 45.000 0.00 0.00 0.00 5.28
6412 8636 1.522668 TGCTTGAGATTTGTCCGGTG 58.477 50.000 0.00 0.00 0.00 4.94
6413 8637 0.804989 GCTTGAGATTTGTCCGGTGG 59.195 55.000 0.00 0.00 0.00 4.61
6414 8638 1.610624 GCTTGAGATTTGTCCGGTGGA 60.611 52.381 0.00 0.00 0.00 4.02
6415 8639 2.941415 GCTTGAGATTTGTCCGGTGGAT 60.941 50.000 0.00 0.00 32.73 3.41
6416 8640 2.691409 TGAGATTTGTCCGGTGGATC 57.309 50.000 0.00 1.56 32.73 3.36
6417 8641 1.209504 TGAGATTTGTCCGGTGGATCC 59.790 52.381 4.20 4.20 32.73 3.36
6426 8650 2.990479 GGTGGATCCGGAGCACTT 59.010 61.111 23.22 0.00 0.00 3.16
6427 8651 1.299976 GGTGGATCCGGAGCACTTT 59.700 57.895 23.22 0.00 0.00 2.66
6428 8652 0.744771 GGTGGATCCGGAGCACTTTC 60.745 60.000 23.22 7.02 0.00 2.62
6429 8653 0.036388 GTGGATCCGGAGCACTTTCA 60.036 55.000 23.22 6.79 0.00 2.69
6430 8654 0.911769 TGGATCCGGAGCACTTTCAT 59.088 50.000 23.22 0.00 0.00 2.57
6431 8655 1.281867 TGGATCCGGAGCACTTTCATT 59.718 47.619 23.22 0.00 0.00 2.57
6432 8656 2.503765 TGGATCCGGAGCACTTTCATTA 59.496 45.455 23.22 0.00 0.00 1.90
6433 8657 2.872858 GGATCCGGAGCACTTTCATTAC 59.127 50.000 23.22 0.00 0.00 1.89
6434 8658 2.396590 TCCGGAGCACTTTCATTACC 57.603 50.000 0.00 0.00 0.00 2.85
6435 8659 1.065709 TCCGGAGCACTTTCATTACCC 60.066 52.381 0.00 0.00 0.00 3.69
6436 8660 1.339631 CCGGAGCACTTTCATTACCCA 60.340 52.381 0.00 0.00 0.00 4.51
6437 8661 2.432444 CGGAGCACTTTCATTACCCAA 58.568 47.619 0.00 0.00 0.00 4.12
6438 8662 2.420022 CGGAGCACTTTCATTACCCAAG 59.580 50.000 0.00 0.00 0.00 3.61
6439 8663 2.755103 GGAGCACTTTCATTACCCAAGG 59.245 50.000 0.00 0.00 0.00 3.61
6440 8664 3.421844 GAGCACTTTCATTACCCAAGGT 58.578 45.455 0.00 0.00 40.16 3.50
6441 8665 4.566907 GGAGCACTTTCATTACCCAAGGTA 60.567 45.833 0.00 0.00 37.09 3.08
6442 8666 4.332828 AGCACTTTCATTACCCAAGGTAC 58.667 43.478 0.00 0.00 37.97 3.34
6443 8667 3.442625 GCACTTTCATTACCCAAGGTACC 59.557 47.826 2.73 2.73 37.97 3.34
6444 8668 4.809691 GCACTTTCATTACCCAAGGTACCT 60.810 45.833 9.21 9.21 37.97 3.08
6445 8669 4.941873 CACTTTCATTACCCAAGGTACCTC 59.058 45.833 16.64 0.00 37.97 3.85
6446 8670 4.018688 ACTTTCATTACCCAAGGTACCTCC 60.019 45.833 16.64 0.00 37.97 4.30
6447 8671 2.484602 TCATTACCCAAGGTACCTCCC 58.515 52.381 16.64 0.00 37.97 4.30
6448 8672 2.046729 TCATTACCCAAGGTACCTCCCT 59.953 50.000 16.64 0.00 37.97 4.20
6449 8673 2.259014 TTACCCAAGGTACCTCCCTC 57.741 55.000 16.64 0.00 37.97 4.30
6450 8674 1.095130 TACCCAAGGTACCTCCCTCA 58.905 55.000 16.64 0.00 37.09 3.86
6451 8675 0.546988 ACCCAAGGTACCTCCCTCAC 60.547 60.000 16.64 0.00 32.11 3.51
6452 8676 0.252742 CCCAAGGTACCTCCCTCACT 60.253 60.000 16.64 0.00 36.75 3.41
6453 8677 1.196012 CCAAGGTACCTCCCTCACTC 58.804 60.000 16.64 0.00 36.75 3.51
6454 8678 1.196012 CAAGGTACCTCCCTCACTCC 58.804 60.000 16.64 0.00 36.75 3.85
6455 8679 0.042881 AAGGTACCTCCCTCACTCCC 59.957 60.000 16.64 0.00 36.75 4.30
6456 8680 1.382833 GGTACCTCCCTCACTCCCC 60.383 68.421 4.06 0.00 0.00 4.81
6457 8681 1.704704 GTACCTCCCTCACTCCCCT 59.295 63.158 0.00 0.00 0.00 4.79
6458 8682 0.042881 GTACCTCCCTCACTCCCCTT 59.957 60.000 0.00 0.00 0.00 3.95
6459 8683 1.290130 GTACCTCCCTCACTCCCCTTA 59.710 57.143 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.798511 TGGGTTGGCGGTGTGTGA 61.799 61.111 0.00 0.00 0.00 3.58
18 19 3.591835 GTGTGGGTTGGCGGTGTG 61.592 66.667 0.00 0.00 0.00 3.82
214 215 3.417069 TTTGCTTGCCTTGCTACTCTA 57.583 42.857 0.00 0.00 0.00 2.43
230 231 9.443283 CTTGTCTGCATATAGTCTTTATTTTGC 57.557 33.333 0.00 0.00 0.00 3.68
393 394 3.334691 TGTCTCTGCAATTTTACCTCGG 58.665 45.455 0.00 0.00 0.00 4.63
428 431 4.469657 TGCAAGGTATTTTTGTCTCCACT 58.530 39.130 0.00 0.00 0.00 4.00
480 483 3.424565 CGAATGCTCTTGAGCTGAAAGTG 60.425 47.826 21.17 0.00 35.30 3.16
634 637 1.085893 TCATATGCTGGTTGTGCACG 58.914 50.000 13.13 0.00 43.59 5.34
666 669 9.765795 CTGTGAACTAAATATACCCTCCTTTAG 57.234 37.037 0.00 0.00 37.26 1.85
669 672 7.989947 TCTGTGAACTAAATATACCCTCCTT 57.010 36.000 0.00 0.00 0.00 3.36
690 693 5.591472 TGCCCTCTTGTTCATTGATTATCTG 59.409 40.000 0.00 0.00 0.00 2.90
700 703 5.954150 ACTGAAATTATGCCCTCTTGTTCAT 59.046 36.000 0.00 0.00 0.00 2.57
825 828 8.935844 GTCTTGTTTTCCTTTTGATGAGTTTTT 58.064 29.630 0.00 0.00 0.00 1.94
846 849 1.535462 GTGGACCGGTGAAATGTCTTG 59.465 52.381 14.63 0.00 0.00 3.02
851 854 0.538516 TTGGGTGGACCGGTGAAATG 60.539 55.000 14.63 0.00 44.64 2.32
895 898 0.033699 AGGGCTTGGAGATTTCCTGC 60.034 55.000 3.60 7.88 44.36 4.85
1227 1231 1.235281 GGAGGCGAAAGTGGAACCAC 61.235 60.000 15.25 15.25 46.50 4.16
1281 1285 0.969894 CGGTGAAGAGAACTCCCTGT 59.030 55.000 0.00 0.00 0.00 4.00
1392 1396 1.388547 AAGACGGCACTGCAGAAAAA 58.611 45.000 23.35 0.00 0.00 1.94
1397 1401 0.514691 GAGAAAAGACGGCACTGCAG 59.485 55.000 13.48 13.48 0.00 4.41
1452 1456 3.713003 TCGGTCAGGATCATAGCCATAT 58.287 45.455 0.00 0.00 0.00 1.78
1463 1467 6.992715 CCTATTCAATTAAGTTCGGTCAGGAT 59.007 38.462 0.00 0.00 0.00 3.24
1472 1476 5.815740 TCTGCGACCCTATTCAATTAAGTTC 59.184 40.000 0.00 0.00 0.00 3.01
1490 1494 1.118965 TTTGGACTCAGGGTCTGCGA 61.119 55.000 0.00 0.00 43.97 5.10
1557 1561 2.751259 GGCTTTGTTCAGCAGATCATCA 59.249 45.455 0.00 0.00 42.10 3.07
1587 1591 1.152902 AGCCAGCTGCAGTTTGTGA 60.153 52.632 16.64 0.00 44.83 3.58
1777 1783 9.099071 AGGCATGTATCTGATAAAGAATCTACT 57.901 33.333 0.00 0.00 38.79 2.57
2000 3362 4.794278 AATGCTTGCATGAATCTTCACA 57.206 36.364 8.98 0.00 40.49 3.58
2091 3454 3.235200 GGTCTGTCTAGGGCACATCTAT 58.765 50.000 0.00 0.00 0.00 1.98
2109 3472 7.175293 ACGTGACTTCTATTAGATAGATGGGTC 59.825 40.741 12.59 12.97 41.23 4.46
2169 3532 2.351455 TGTCGTGCACAAAAGACAGAA 58.649 42.857 18.64 0.00 38.52 3.02
2170 3533 2.017138 TGTCGTGCACAAAAGACAGA 57.983 45.000 18.64 0.00 38.52 3.41
2285 3648 2.825205 TCATGCATACGATGGTGACTG 58.175 47.619 0.00 0.00 0.00 3.51
2333 3702 5.942236 TCATGATTTCAACAAAGGAGAGAGG 59.058 40.000 0.00 0.00 0.00 3.69
2556 3939 6.543465 TGAAAAGACACATGAAGACAATGAGT 59.457 34.615 0.00 0.00 0.00 3.41
2716 4101 2.981400 ACAAGTTATTTCGCCCAACG 57.019 45.000 0.00 0.00 45.62 4.10
2767 4152 7.328493 CGTTATCTAAATGAGAACACACAGACA 59.672 37.037 4.47 0.00 44.55 3.41
2913 4298 8.967779 AGGGTCAAGTAATATACCTATAGCAA 57.032 34.615 0.00 0.00 32.38 3.91
2953 4345 0.395312 GGCGGCTAATAGCTACCCAA 59.605 55.000 12.41 0.00 41.99 4.12
2954 4346 1.812686 CGGCGGCTAATAGCTACCCA 61.813 60.000 12.41 0.00 41.99 4.51
2956 4348 1.737008 GCGGCGGCTAATAGCTACC 60.737 63.158 12.41 12.25 41.99 3.18
2957 4349 1.006571 TGCGGCGGCTAATAGCTAC 60.007 57.895 17.76 4.51 41.99 3.58
2958 4350 1.006571 GTGCGGCGGCTAATAGCTA 60.007 57.895 17.76 0.00 41.99 3.32
2959 4351 2.280186 GTGCGGCGGCTAATAGCT 60.280 61.111 17.76 0.00 41.99 3.32
2960 4352 3.346606 GGTGCGGCGGCTAATAGC 61.347 66.667 17.76 3.17 41.46 2.97
2961 4353 2.665185 GGGTGCGGCGGCTAATAG 60.665 66.667 17.76 0.00 40.82 1.73
2962 4354 3.471806 TGGGTGCGGCGGCTAATA 61.472 61.111 17.76 0.00 40.82 0.98
3034 4457 6.552859 TCTCAACGCATTTCTTATGTGAAA 57.447 33.333 5.42 0.00 39.79 2.69
3346 4776 1.287739 AGAGAGACTGAAGGAGGGAGG 59.712 57.143 0.00 0.00 0.00 4.30
3355 4785 3.827008 ACAAGCACAAGAGAGACTGAA 57.173 42.857 0.00 0.00 0.00 3.02
3526 4966 2.104792 CGGGGATCATCAGCTCCTTTAA 59.895 50.000 0.00 0.00 30.67 1.52
3692 5132 3.243501 GGAGTGCAACAGCAAATTTGAGA 60.244 43.478 22.31 0.00 41.43 3.27
3736 5176 3.128242 GGTGCTTCATTTCATCTCCACAG 59.872 47.826 0.00 0.00 0.00 3.66
3746 5186 3.788937 CATCAATGGGGTGCTTCATTTC 58.211 45.455 0.00 0.00 31.95 2.17
3770 5210 1.940613 GGAGCGACCATGGTTGTATTC 59.059 52.381 29.17 22.83 38.79 1.75
3841 5281 7.679025 AGGAGGGTAGTAAATTATCATACCTCC 59.321 40.741 19.64 19.64 36.84 4.30
3861 5301 0.618981 AAAAGTTCGGCCTAGGAGGG 59.381 55.000 14.75 0.00 35.37 4.30
3869 5309 8.432359 CAATTAAACATAAGAAAAAGTTCGGCC 58.568 33.333 0.00 0.00 38.90 6.13
4014 5460 9.485206 GAAGTACAGTCTTTTATGTTCCTGTTA 57.515 33.333 0.00 0.00 35.08 2.41
4292 5864 0.324738 CCACCTCCTCAGCCAGTCTA 60.325 60.000 0.00 0.00 0.00 2.59
4355 5941 2.644418 GCATGTTGCACGCCAAGA 59.356 55.556 0.00 0.00 44.26 3.02
4810 6437 6.155393 ACCATTATAGGTATCTTGCTAGCTCC 59.845 42.308 17.23 8.58 40.98 4.70
4903 6530 4.420522 TGATGCCATACTGATGTTGCTA 57.579 40.909 0.00 0.00 0.00 3.49
4905 6532 3.566742 TCATGATGCCATACTGATGTTGC 59.433 43.478 0.00 0.00 0.00 4.17
4912 6539 2.443416 CCCCATCATGATGCCATACTG 58.557 52.381 27.24 13.23 37.49 2.74
4931 6558 3.802139 GGTTTGCTTAAAACTGAGTTGCC 59.198 43.478 0.00 0.00 46.27 4.52
5013 6640 7.935338 AGATGTTTGTTTGCTGTTAGAAATG 57.065 32.000 0.00 0.00 0.00 2.32
5055 6682 6.569127 TGCTTTCATAGTAGGTAAATCCCA 57.431 37.500 0.00 0.00 36.75 4.37
5080 6707 8.930760 CGACCCTGCAAAAATGAAAATAAAATA 58.069 29.630 0.00 0.00 0.00 1.40
5093 6720 2.593026 AGGAATTCGACCCTGCAAAAA 58.407 42.857 0.00 0.00 0.00 1.94
5096 6723 1.533625 CAAGGAATTCGACCCTGCAA 58.466 50.000 0.00 0.00 32.12 4.08
5116 6743 1.869767 CAAATGGACAGGCTATCTCGC 59.130 52.381 0.00 0.00 0.00 5.03
5117 6744 3.459232 TCAAATGGACAGGCTATCTCG 57.541 47.619 0.00 0.00 0.00 4.04
5180 6807 1.075601 ACTGCAAAATGGGGAGGAGA 58.924 50.000 0.00 0.00 0.00 3.71
5181 6808 1.928868 AACTGCAAAATGGGGAGGAG 58.071 50.000 0.00 0.00 0.00 3.69
5254 6881 0.759346 AGCCACTTCCTCGAACACTT 59.241 50.000 0.00 0.00 0.00 3.16
5333 6960 0.107848 TAGCCTTAGCCAGTTTCGCC 60.108 55.000 0.00 0.00 41.25 5.54
5339 6966 2.703007 CTCCTTGATAGCCTTAGCCAGT 59.297 50.000 0.00 0.00 41.25 4.00
5419 7049 3.522553 ACTACATACTTGGCGCTCTTTC 58.477 45.455 7.64 0.00 0.00 2.62
5444 7074 4.720649 AGCTACTCATTTTCGTCTAGCA 57.279 40.909 0.00 0.00 30.96 3.49
5462 7092 4.018960 ACAGTAACCATGGATTGAGAAGCT 60.019 41.667 21.47 0.22 0.00 3.74
5473 7103 3.334691 ACAACATCGACAGTAACCATGG 58.665 45.455 11.19 11.19 0.00 3.66
5491 7121 5.630121 AGACAGAGAGAGAAAGAGAGACAA 58.370 41.667 0.00 0.00 0.00 3.18
5499 7129 4.095483 GCAGAGAGAGACAGAGAGAGAAAG 59.905 50.000 0.00 0.00 0.00 2.62
5501 7131 3.264193 AGCAGAGAGAGACAGAGAGAGAA 59.736 47.826 0.00 0.00 0.00 2.87
5508 7138 0.887247 GTGCAGCAGAGAGAGACAGA 59.113 55.000 0.00 0.00 0.00 3.41
5509 7139 0.456482 CGTGCAGCAGAGAGAGACAG 60.456 60.000 0.00 0.00 0.00 3.51
5510 7140 1.175347 ACGTGCAGCAGAGAGAGACA 61.175 55.000 0.00 0.00 0.00 3.41
5511 7141 0.805614 TACGTGCAGCAGAGAGAGAC 59.194 55.000 0.00 0.00 0.00 3.36
5512 7142 0.805614 GTACGTGCAGCAGAGAGAGA 59.194 55.000 0.00 0.00 0.00 3.10
5513 7143 0.522286 CGTACGTGCAGCAGAGAGAG 60.522 60.000 7.22 0.00 0.00 3.20
5514 7144 1.502190 CGTACGTGCAGCAGAGAGA 59.498 57.895 7.22 0.00 0.00 3.10
5515 7145 1.515088 CCGTACGTGCAGCAGAGAG 60.515 63.158 15.21 0.00 0.00 3.20
5516 7146 1.313091 ATCCGTACGTGCAGCAGAGA 61.313 55.000 15.21 0.85 0.00 3.10
5517 7147 1.139734 ATCCGTACGTGCAGCAGAG 59.860 57.895 15.21 0.00 0.00 3.35
5518 7148 1.153842 CATCCGTACGTGCAGCAGA 60.154 57.895 15.21 2.40 0.00 4.26
5519 7149 2.167219 CCATCCGTACGTGCAGCAG 61.167 63.158 15.21 0.00 0.00 4.24
5687 7321 5.461737 CGATAGCAGAAGAATTTCAGTCCTC 59.538 44.000 0.00 0.00 35.70 3.71
5690 7324 6.237969 GGTTCGATAGCAGAAGAATTTCAGTC 60.238 42.308 0.00 0.00 35.70 3.51
5717 7351 1.350019 TGAGACGGAGAGTGGACTGTA 59.650 52.381 0.00 0.00 0.00 2.74
5719 7353 1.248486 TTGAGACGGAGAGTGGACTG 58.752 55.000 0.00 0.00 0.00 3.51
5720 7354 1.996798 TTTGAGACGGAGAGTGGACT 58.003 50.000 0.00 0.00 0.00 3.85
5721 7355 3.320673 AATTTGAGACGGAGAGTGGAC 57.679 47.619 0.00 0.00 0.00 4.02
5723 7357 3.195825 AGGTAATTTGAGACGGAGAGTGG 59.804 47.826 0.00 0.00 0.00 4.00
5725 7359 4.822026 CAAGGTAATTTGAGACGGAGAGT 58.178 43.478 0.00 0.00 0.00 3.24
5728 7362 2.678336 GGCAAGGTAATTTGAGACGGAG 59.322 50.000 0.00 0.00 0.00 4.63
5740 7374 0.541764 CTTGGGCCAAGGCAAGGTAA 60.542 55.000 34.03 2.52 44.11 2.85
5789 7721 9.668497 GTGTTTGACCTCTTTTTCCTATATAGT 57.332 33.333 8.92 0.00 0.00 2.12
5790 7722 8.818057 CGTGTTTGACCTCTTTTTCCTATATAG 58.182 37.037 2.46 2.46 0.00 1.31
5791 7723 7.279313 GCGTGTTTGACCTCTTTTTCCTATATA 59.721 37.037 0.00 0.00 0.00 0.86
5829 8016 7.491372 TCCACTTATCTCGCACAACTTAATAAG 59.509 37.037 0.00 0.00 33.52 1.73
5830 8017 7.324935 TCCACTTATCTCGCACAACTTAATAA 58.675 34.615 0.00 0.00 0.00 1.40
5831 8018 6.869695 TCCACTTATCTCGCACAACTTAATA 58.130 36.000 0.00 0.00 0.00 0.98
5832 8019 5.730550 TCCACTTATCTCGCACAACTTAAT 58.269 37.500 0.00 0.00 0.00 1.40
5833 8020 5.142061 TCCACTTATCTCGCACAACTTAA 57.858 39.130 0.00 0.00 0.00 1.85
5834 8021 4.794278 TCCACTTATCTCGCACAACTTA 57.206 40.909 0.00 0.00 0.00 2.24
5835 8022 3.678056 TCCACTTATCTCGCACAACTT 57.322 42.857 0.00 0.00 0.00 2.66
5836 8023 3.895232 ATCCACTTATCTCGCACAACT 57.105 42.857 0.00 0.00 0.00 3.16
5837 8024 4.154195 ACAAATCCACTTATCTCGCACAAC 59.846 41.667 0.00 0.00 0.00 3.32
5838 8025 4.323417 ACAAATCCACTTATCTCGCACAA 58.677 39.130 0.00 0.00 0.00 3.33
5839 8026 3.932710 GACAAATCCACTTATCTCGCACA 59.067 43.478 0.00 0.00 0.00 4.57
5840 8027 3.932710 TGACAAATCCACTTATCTCGCAC 59.067 43.478 0.00 0.00 0.00 5.34
5841 8028 3.932710 GTGACAAATCCACTTATCTCGCA 59.067 43.478 0.00 0.00 0.00 5.10
5842 8029 3.932710 TGTGACAAATCCACTTATCTCGC 59.067 43.478 0.00 0.00 35.66 5.03
5843 8030 5.171476 AGTGTGACAAATCCACTTATCTCG 58.829 41.667 0.00 0.00 34.55 4.04
5844 8031 6.876257 AGAAGTGTGACAAATCCACTTATCTC 59.124 38.462 8.65 0.00 42.01 2.75
5845 8032 6.773638 AGAAGTGTGACAAATCCACTTATCT 58.226 36.000 8.65 2.10 42.01 1.98
5846 8033 6.092807 GGAGAAGTGTGACAAATCCACTTATC 59.907 42.308 16.88 16.88 43.95 1.75
5847 8034 5.940470 GGAGAAGTGTGACAAATCCACTTAT 59.060 40.000 8.65 6.39 42.01 1.73
5848 8035 5.163248 TGGAGAAGTGTGACAAATCCACTTA 60.163 40.000 8.65 0.00 42.01 2.24
5849 8036 4.137543 GGAGAAGTGTGACAAATCCACTT 58.862 43.478 8.47 8.47 43.35 3.16
5850 8037 3.136443 TGGAGAAGTGTGACAAATCCACT 59.864 43.478 5.52 0.00 37.73 4.00
5881 8068 3.834813 CGGGAAGAGATAATGGAGATGGA 59.165 47.826 0.00 0.00 0.00 3.41
5882 8069 3.618507 GCGGGAAGAGATAATGGAGATGG 60.619 52.174 0.00 0.00 0.00 3.51
5883 8070 3.594134 GCGGGAAGAGATAATGGAGATG 58.406 50.000 0.00 0.00 0.00 2.90
5884 8071 2.569404 GGCGGGAAGAGATAATGGAGAT 59.431 50.000 0.00 0.00 0.00 2.75
5885 8072 1.971357 GGCGGGAAGAGATAATGGAGA 59.029 52.381 0.00 0.00 0.00 3.71
5886 8073 1.974236 AGGCGGGAAGAGATAATGGAG 59.026 52.381 0.00 0.00 0.00 3.86
5887 8074 1.694150 CAGGCGGGAAGAGATAATGGA 59.306 52.381 0.00 0.00 0.00 3.41
5888 8075 1.879796 GCAGGCGGGAAGAGATAATGG 60.880 57.143 0.00 0.00 0.00 3.16
5889 8076 1.517242 GCAGGCGGGAAGAGATAATG 58.483 55.000 0.00 0.00 0.00 1.90
5890 8077 0.398318 GGCAGGCGGGAAGAGATAAT 59.602 55.000 0.00 0.00 0.00 1.28
5891 8078 1.696097 GGGCAGGCGGGAAGAGATAA 61.696 60.000 0.00 0.00 0.00 1.75
5892 8079 2.140792 GGGCAGGCGGGAAGAGATA 61.141 63.158 0.00 0.00 0.00 1.98
5893 8080 3.483869 GGGCAGGCGGGAAGAGAT 61.484 66.667 0.00 0.00 0.00 2.75
5920 8107 0.388649 AAAGAGTACGCTGAGCACCG 60.389 55.000 4.88 0.00 0.00 4.94
5968 8155 2.279517 GGTAGGATGCTGCGTCGG 60.280 66.667 15.13 0.00 0.00 4.79
6010 8233 3.281727 AAATTTAGCCAGATCTCGCCA 57.718 42.857 8.86 0.00 0.00 5.69
6014 8237 7.867403 TCAAAACACAAAATTTAGCCAGATCTC 59.133 33.333 0.00 0.00 0.00 2.75
6020 8243 6.825610 AGGATCAAAACACAAAATTTAGCCA 58.174 32.000 0.00 0.00 0.00 4.75
6031 8254 4.974368 ACACGAAAAGGATCAAAACACA 57.026 36.364 0.00 0.00 0.00 3.72
6032 8255 6.056428 AGTACACGAAAAGGATCAAAACAC 57.944 37.500 0.00 0.00 0.00 3.32
6039 8262 5.063564 CCAGCTAAAGTACACGAAAAGGATC 59.936 44.000 0.00 0.00 0.00 3.36
6041 8264 4.039488 TCCAGCTAAAGTACACGAAAAGGA 59.961 41.667 0.00 0.00 0.00 3.36
6048 8271 4.106197 GTCAGATCCAGCTAAAGTACACG 58.894 47.826 0.00 0.00 0.00 4.49
6092 8315 2.159379 CGCTAGCCAAAAGGGTCAAATC 60.159 50.000 9.66 0.00 39.65 2.17
6097 8320 3.188011 GCGCTAGCCAAAAGGGTC 58.812 61.111 9.66 0.00 39.65 4.46
6123 8346 3.754188 GCTGTCAAAAGCTACCATCAG 57.246 47.619 0.00 0.00 40.20 2.90
6161 8384 1.069258 GTCTATGCCACCTACCGCC 59.931 63.158 0.00 0.00 0.00 6.13
6163 8386 1.362717 CCGTCTATGCCACCTACCG 59.637 63.158 0.00 0.00 0.00 4.02
6233 8456 1.137872 CTGCTACCCTACAGCCAAGAG 59.862 57.143 0.00 0.00 38.29 2.85
6264 8487 4.609018 CTACCGCCATGGAGCCCG 62.609 72.222 18.40 9.41 42.00 6.13
6289 8512 1.064685 CCCACCCCTCACAACCTTATC 60.065 57.143 0.00 0.00 0.00 1.75
6295 8518 4.678743 GCCCCCACCCCTCACAAC 62.679 72.222 0.00 0.00 0.00 3.32
6296 8519 4.938756 AGCCCCCACCCCTCACAA 62.939 66.667 0.00 0.00 0.00 3.33
6318 8541 1.000896 GTGAATGAGTGGGTGGGGG 60.001 63.158 0.00 0.00 0.00 5.40
6332 8556 0.338120 GAATGGGGAATGGGGGTGAA 59.662 55.000 0.00 0.00 0.00 3.18
6337 8561 0.929244 AGTGAGAATGGGGAATGGGG 59.071 55.000 0.00 0.00 0.00 4.96
6338 8562 1.849039 AGAGTGAGAATGGGGAATGGG 59.151 52.381 0.00 0.00 0.00 4.00
6339 8563 3.659183 AAGAGTGAGAATGGGGAATGG 57.341 47.619 0.00 0.00 0.00 3.16
6340 8564 3.624861 CGAAAGAGTGAGAATGGGGAATG 59.375 47.826 0.00 0.00 0.00 2.67
6341 8565 3.519510 TCGAAAGAGTGAGAATGGGGAAT 59.480 43.478 0.00 0.00 34.84 3.01
6342 8566 2.903784 TCGAAAGAGTGAGAATGGGGAA 59.096 45.455 0.00 0.00 34.84 3.97
6343 8567 2.536066 TCGAAAGAGTGAGAATGGGGA 58.464 47.619 0.00 0.00 34.84 4.81
6356 8580 1.546476 GAGGACCTTCAGCTCGAAAGA 59.454 52.381 0.00 0.00 39.12 2.52
6357 8581 1.548269 AGAGGACCTTCAGCTCGAAAG 59.452 52.381 0.00 0.00 31.71 2.62
6358 8582 1.546476 GAGAGGACCTTCAGCTCGAAA 59.454 52.381 0.00 0.00 31.71 3.46
6359 8583 1.178276 GAGAGGACCTTCAGCTCGAA 58.822 55.000 0.00 0.00 0.00 3.71
6360 8584 0.038310 TGAGAGGACCTTCAGCTCGA 59.962 55.000 0.00 0.00 0.00 4.04
6361 8585 0.891373 TTGAGAGGACCTTCAGCTCG 59.109 55.000 0.00 0.00 0.00 5.03
6362 8586 3.197549 AGATTTGAGAGGACCTTCAGCTC 59.802 47.826 0.00 0.00 0.00 4.09
6363 8587 3.180507 AGATTTGAGAGGACCTTCAGCT 58.819 45.455 0.00 0.00 0.00 4.24
6364 8588 3.055530 TGAGATTTGAGAGGACCTTCAGC 60.056 47.826 0.00 0.00 0.00 4.26
6365 8589 4.222588 AGTGAGATTTGAGAGGACCTTCAG 59.777 45.833 0.00 0.00 0.00 3.02
6366 8590 4.163427 AGTGAGATTTGAGAGGACCTTCA 58.837 43.478 0.00 0.00 0.00 3.02
6367 8591 4.221703 TGAGTGAGATTTGAGAGGACCTTC 59.778 45.833 0.00 0.00 0.00 3.46
6368 8592 4.163427 TGAGTGAGATTTGAGAGGACCTT 58.837 43.478 0.00 0.00 0.00 3.50
6369 8593 3.784178 TGAGTGAGATTTGAGAGGACCT 58.216 45.455 0.00 0.00 0.00 3.85
6370 8594 4.751767 ATGAGTGAGATTTGAGAGGACC 57.248 45.455 0.00 0.00 0.00 4.46
6371 8595 5.163774 GCAAATGAGTGAGATTTGAGAGGAC 60.164 44.000 8.95 0.00 41.44 3.85
6372 8596 4.940046 GCAAATGAGTGAGATTTGAGAGGA 59.060 41.667 8.95 0.00 41.44 3.71
6373 8597 4.942483 AGCAAATGAGTGAGATTTGAGAGG 59.058 41.667 8.95 0.00 41.44 3.69
6374 8598 6.148976 TCAAGCAAATGAGTGAGATTTGAGAG 59.851 38.462 8.95 0.00 41.44 3.20
6375 8599 5.999600 TCAAGCAAATGAGTGAGATTTGAGA 59.000 36.000 8.95 1.94 41.44 3.27
6376 8600 6.148976 TCTCAAGCAAATGAGTGAGATTTGAG 59.851 38.462 12.18 4.50 45.65 3.02
6377 8601 5.999600 TCTCAAGCAAATGAGTGAGATTTGA 59.000 36.000 12.18 0.00 45.65 2.69
6378 8602 6.250344 TCTCAAGCAAATGAGTGAGATTTG 57.750 37.500 12.18 0.00 45.65 2.32
6383 8607 6.010294 ACAAATCTCAAGCAAATGAGTGAG 57.990 37.500 12.18 7.20 45.65 3.51
6384 8608 5.048504 GGACAAATCTCAAGCAAATGAGTGA 60.049 40.000 12.18 0.00 45.65 3.41
6385 8609 5.159209 GGACAAATCTCAAGCAAATGAGTG 58.841 41.667 12.18 7.52 45.65 3.51
6386 8610 4.083110 CGGACAAATCTCAAGCAAATGAGT 60.083 41.667 12.18 0.84 45.65 3.41
6387 8611 4.409570 CGGACAAATCTCAAGCAAATGAG 58.590 43.478 7.62 7.62 46.62 2.90
6388 8612 3.191162 CCGGACAAATCTCAAGCAAATGA 59.809 43.478 0.00 0.00 0.00 2.57
6389 8613 3.057315 ACCGGACAAATCTCAAGCAAATG 60.057 43.478 9.46 0.00 0.00 2.32
6390 8614 3.057315 CACCGGACAAATCTCAAGCAAAT 60.057 43.478 9.46 0.00 0.00 2.32
6391 8615 2.293122 CACCGGACAAATCTCAAGCAAA 59.707 45.455 9.46 0.00 0.00 3.68
6392 8616 1.879380 CACCGGACAAATCTCAAGCAA 59.121 47.619 9.46 0.00 0.00 3.91
6393 8617 1.522668 CACCGGACAAATCTCAAGCA 58.477 50.000 9.46 0.00 0.00 3.91
6394 8618 0.804989 CCACCGGACAAATCTCAAGC 59.195 55.000 9.46 0.00 0.00 4.01
6395 8619 2.472695 TCCACCGGACAAATCTCAAG 57.527 50.000 9.46 0.00 0.00 3.02
6396 8620 2.355716 GGATCCACCGGACAAATCTCAA 60.356 50.000 9.46 0.00 32.98 3.02
6397 8621 1.209504 GGATCCACCGGACAAATCTCA 59.790 52.381 9.46 0.00 32.98 3.27
6398 8622 1.954927 GGATCCACCGGACAAATCTC 58.045 55.000 9.46 0.00 32.98 2.75
6409 8633 0.744771 GAAAGTGCTCCGGATCCACC 60.745 60.000 23.98 11.16 0.00 4.61
6410 8634 0.036388 TGAAAGTGCTCCGGATCCAC 60.036 55.000 21.53 21.53 0.00 4.02
6411 8635 0.911769 ATGAAAGTGCTCCGGATCCA 59.088 50.000 13.41 2.06 0.00 3.41
6412 8636 2.044123 AATGAAAGTGCTCCGGATCC 57.956 50.000 3.57 0.00 0.00 3.36
6413 8637 2.872858 GGTAATGAAAGTGCTCCGGATC 59.127 50.000 3.57 0.00 0.00 3.36
6414 8638 2.421529 GGGTAATGAAAGTGCTCCGGAT 60.422 50.000 3.57 0.00 0.00 4.18
6415 8639 1.065709 GGGTAATGAAAGTGCTCCGGA 60.066 52.381 2.93 2.93 0.00 5.14
6416 8640 1.339631 TGGGTAATGAAAGTGCTCCGG 60.340 52.381 0.00 0.00 0.00 5.14
6417 8641 2.107950 TGGGTAATGAAAGTGCTCCG 57.892 50.000 0.00 0.00 0.00 4.63
6418 8642 2.755103 CCTTGGGTAATGAAAGTGCTCC 59.245 50.000 0.00 0.00 0.00 4.70
6419 8643 3.421844 ACCTTGGGTAATGAAAGTGCTC 58.578 45.455 0.00 0.00 32.11 4.26
6420 8644 3.525800 ACCTTGGGTAATGAAAGTGCT 57.474 42.857 0.00 0.00 32.11 4.40
6421 8645 3.442625 GGTACCTTGGGTAATGAAAGTGC 59.557 47.826 4.06 0.00 40.12 4.40
6422 8646 4.918588 AGGTACCTTGGGTAATGAAAGTG 58.081 43.478 9.21 0.00 40.12 3.16
6423 8647 4.018688 GGAGGTACCTTGGGTAATGAAAGT 60.019 45.833 17.53 0.00 40.12 2.66
6424 8648 4.524053 GGAGGTACCTTGGGTAATGAAAG 58.476 47.826 17.53 0.00 40.12 2.62
6425 8649 3.267551 GGGAGGTACCTTGGGTAATGAAA 59.732 47.826 17.53 0.00 40.12 2.69
6426 8650 2.848071 GGGAGGTACCTTGGGTAATGAA 59.152 50.000 17.53 0.00 40.12 2.57
6427 8651 2.046729 AGGGAGGTACCTTGGGTAATGA 59.953 50.000 17.53 0.00 40.12 2.57
6428 8652 2.438392 GAGGGAGGTACCTTGGGTAATG 59.562 54.545 17.53 0.00 42.10 1.90
6429 8653 2.046729 TGAGGGAGGTACCTTGGGTAAT 59.953 50.000 17.53 0.00 42.10 1.89
6430 8654 1.437945 TGAGGGAGGTACCTTGGGTAA 59.562 52.381 17.53 0.00 42.10 2.85
6431 8655 1.095130 TGAGGGAGGTACCTTGGGTA 58.905 55.000 17.53 0.20 42.10 3.69
6432 8656 0.546988 GTGAGGGAGGTACCTTGGGT 60.547 60.000 17.53 0.92 42.10 4.51
6433 8657 0.252742 AGTGAGGGAGGTACCTTGGG 60.253 60.000 17.53 0.00 42.10 4.12
6434 8658 1.196012 GAGTGAGGGAGGTACCTTGG 58.804 60.000 17.53 0.00 42.10 3.61
6435 8659 1.196012 GGAGTGAGGGAGGTACCTTG 58.804 60.000 17.53 0.00 42.10 3.61
6436 8660 0.042881 GGGAGTGAGGGAGGTACCTT 59.957 60.000 17.53 0.00 42.10 3.50
6437 8661 1.704704 GGGAGTGAGGGAGGTACCT 59.295 63.158 16.26 16.26 45.57 3.08
6438 8662 1.382833 GGGGAGTGAGGGAGGTACC 60.383 68.421 2.73 2.73 38.08 3.34
6439 8663 0.042881 AAGGGGAGTGAGGGAGGTAC 59.957 60.000 0.00 0.00 0.00 3.34
6440 8664 1.702699 TAAGGGGAGTGAGGGAGGTA 58.297 55.000 0.00 0.00 0.00 3.08
6441 8665 2.511560 TAAGGGGAGTGAGGGAGGT 58.488 57.895 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.