Multiple sequence alignment - TraesCS7D01G213300
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G213300
chr7D
100.000
4762
0
0
1
4762
171743670
171748431
0.000000e+00
8794.0
1
TraesCS7D01G213300
chr7D
92.105
76
6
0
4203
4278
506889153
506889228
1.810000e-19
108.0
2
TraesCS7D01G213300
chr7A
96.183
3353
101
16
529
3867
174692857
174696196
0.000000e+00
5457.0
3
TraesCS7D01G213300
chr7A
92.400
500
29
6
3697
4193
174696195
174696688
0.000000e+00
704.0
4
TraesCS7D01G213300
chr7A
84.755
551
64
5
1
531
174687830
174688380
7.010000e-148
534.0
5
TraesCS7D01G213300
chr7A
96.970
33
0
1
3603
3634
174696308
174696340
2.000000e-03
54.7
6
TraesCS7D01G213300
chr7B
94.344
2705
130
13
1
2691
138125476
138128171
0.000000e+00
4126.0
7
TraesCS7D01G213300
chr7B
95.238
1533
56
11
2676
4199
138128187
138129711
0.000000e+00
2410.0
8
TraesCS7D01G213300
chr7B
86.957
322
29
7
4444
4762
674014323
674014634
2.730000e-92
350.0
9
TraesCS7D01G213300
chr7B
87.222
180
14
4
4280
4456
674014130
674014303
3.760000e-46
196.0
10
TraesCS7D01G213300
chr2A
82.863
496
61
13
4281
4762
716483574
716483089
1.580000e-114
424.0
11
TraesCS7D01G213300
chr5A
86.916
321
30
7
4444
4762
489676184
489675874
2.730000e-92
350.0
12
TraesCS7D01G213300
chr5A
84.698
281
43
0
1206
1486
605321659
605321379
1.010000e-71
281.0
13
TraesCS7D01G213300
chr5A
86.188
181
16
4
4279
4456
489676379
489676205
2.260000e-43
187.0
14
TraesCS7D01G213300
chr1B
84.252
254
38
2
1132
1384
62077014
62076762
3.680000e-61
246.0
15
TraesCS7D01G213300
chr1B
85.526
152
22
0
1554
1705
62076767
62076616
4.930000e-35
159.0
16
TraesCS7D01G213300
chr5D
73.391
233
47
12
3142
3368
30954318
30954095
6.610000e-09
73.1
17
TraesCS7D01G213300
chr5B
89.474
57
6
0
3312
3368
23425348
23425292
6.610000e-09
73.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G213300
chr7D
171743670
171748431
4761
False
8794.0
8794
100.000000
1
4762
1
chr7D.!!$F1
4761
1
TraesCS7D01G213300
chr7A
174692857
174696688
3831
False
2071.9
5457
95.184333
529
4193
3
chr7A.!!$F2
3664
2
TraesCS7D01G213300
chr7A
174687830
174688380
550
False
534.0
534
84.755000
1
531
1
chr7A.!!$F1
530
3
TraesCS7D01G213300
chr7B
138125476
138129711
4235
False
3268.0
4126
94.791000
1
4199
2
chr7B.!!$F1
4198
4
TraesCS7D01G213300
chr7B
674014130
674014634
504
False
273.0
350
87.089500
4280
4762
2
chr7B.!!$F2
482
5
TraesCS7D01G213300
chr5A
489675874
489676379
505
True
268.5
350
86.552000
4279
4762
2
chr5A.!!$R2
483
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
382
412
0.034337
GGGTACACGACAAAGGCTCA
59.966
55.0
0.00
0.0
0.00
4.26
F
949
980
0.179078
CCATCTCAGTCAGCCTCAGC
60.179
60.0
0.00
0.0
40.32
4.26
F
1824
1862
0.809241
GCCTCGGCTCTGACATTCTG
60.809
60.0
0.00
0.0
38.26
3.02
F
2995
3069
0.179089
GCATGCTGGATCTCGTGACT
60.179
55.0
11.37
0.0
0.00
3.41
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1431
1469
1.003812
CCGGTGTCAAGAACCCCAATA
59.996
52.381
0.00
0.0
33.88
1.90
R
2385
2423
1.268948
GCGTAGTCCCGTATCTTGTCC
60.269
57.143
0.00
0.0
0.00
4.02
R
3494
3574
0.611062
CCCTCCTGTACCTCACGACA
60.611
60.000
0.00
0.0
0.00
4.35
R
4220
4469
0.032130
TAACGGGCGCATCTGAGATC
59.968
55.000
10.83
0.0
0.00
2.75
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
51
52
2.782222
TAGTCATCCTCGTGCGGCC
61.782
63.158
0.00
0.00
0.00
6.13
72
73
0.394216
CGCCCAACAATCAGATCCCA
60.394
55.000
0.00
0.00
0.00
4.37
80
81
2.775960
ACAATCAGATCCCAGATGCTCA
59.224
45.455
0.00
0.00
0.00
4.26
158
159
2.753029
GCAGCTCCAGGTGACCTT
59.247
61.111
0.00
0.00
45.66
3.50
160
161
2.061220
CAGCTCCAGGTGACCTTCA
58.939
57.895
0.00
0.00
45.66
3.02
161
162
0.036577
CAGCTCCAGGTGACCTTCAG
60.037
60.000
0.00
1.23
45.66
3.02
227
247
2.679092
CCCAAGCATGAGGAGGCA
59.321
61.111
0.00
0.00
0.00
4.75
254
274
1.141019
GCACTATCCGCCTTCACGA
59.859
57.895
0.00
0.00
34.06
4.35
361
391
2.924101
ACCAACGGCGGTAAGGGA
60.924
61.111
13.24
0.00
37.57
4.20
382
412
0.034337
GGGTACACGACAAAGGCTCA
59.966
55.000
0.00
0.00
0.00
4.26
423
453
3.885521
GACTAGGACGACGCGGGG
61.886
72.222
12.47
3.65
0.00
5.73
437
467
2.025418
CGGGGGTCTGTTTTCGTCG
61.025
63.158
0.00
0.00
0.00
5.12
498
528
9.768662
TTAGGCCTAAATAGAAATAAGGTAACG
57.231
33.333
23.21
0.00
46.39
3.18
569
600
5.649395
TCGAGAGGGTTCTACTTCGAAATTA
59.351
40.000
0.00
0.00
32.53
1.40
570
601
5.972382
CGAGAGGGTTCTACTTCGAAATTAG
59.028
44.000
0.00
3.28
32.53
1.73
720
751
8.088365
AGAAACCAAAATAATCACTAAAGCCAC
58.912
33.333
0.00
0.00
0.00
5.01
730
761
4.101114
TCACTAAAGCCACCTAATCCTGA
58.899
43.478
0.00
0.00
0.00
3.86
759
790
2.812591
GCTGCATCACTCCCTAATCATG
59.187
50.000
0.00
0.00
0.00
3.07
760
791
2.812591
CTGCATCACTCCCTAATCATGC
59.187
50.000
0.00
0.00
37.69
4.06
949
980
0.179078
CCATCTCAGTCAGCCTCAGC
60.179
60.000
0.00
0.00
40.32
4.26
953
984
1.228988
TCAGTCAGCCTCAGCCTCA
60.229
57.895
0.00
0.00
41.25
3.86
954
985
1.218585
CAGTCAGCCTCAGCCTCAG
59.781
63.158
0.00
0.00
41.25
3.35
955
986
1.229145
AGTCAGCCTCAGCCTCAGT
60.229
57.895
0.00
0.00
41.25
3.41
956
987
1.217779
GTCAGCCTCAGCCTCAGTC
59.782
63.158
0.00
0.00
41.25
3.51
957
988
1.986757
TCAGCCTCAGCCTCAGTCC
60.987
63.158
0.00
0.00
41.25
3.85
958
989
1.988956
CAGCCTCAGCCTCAGTCCT
60.989
63.158
0.00
0.00
41.25
3.85
959
990
1.685421
AGCCTCAGCCTCAGTCCTC
60.685
63.158
0.00
0.00
41.25
3.71
1130
1168
2.168521
CCTACATCGTGTTCATGGACCT
59.831
50.000
0.46
0.00
0.00
3.85
1434
1472
2.733127
CTCGCACGACGTGGTTATT
58.267
52.632
27.86
0.00
44.19
1.40
1529
1567
4.681978
GAAGGGCGTGTGCGAGGT
62.682
66.667
0.00
0.00
44.10
3.85
1824
1862
0.809241
GCCTCGGCTCTGACATTCTG
60.809
60.000
0.00
0.00
38.26
3.02
2019
2057
4.681978
AACTCAGCGCCGTGGGTC
62.682
66.667
2.29
0.00
27.92
4.46
2058
2096
2.342279
CTGGACCGCGACTTTCCA
59.658
61.111
8.23
12.90
37.07
3.53
2082
2120
3.771160
GTCACGCTCCCATCCGGT
61.771
66.667
0.00
0.00
0.00
5.28
2766
2837
6.599244
TGCTACTCACAATCAAATCCTTTAGG
59.401
38.462
0.00
0.00
0.00
2.69
2886
2960
3.314913
ACATGTGATCTGCTCTAGACGAG
59.685
47.826
0.00
0.00
42.88
4.18
2995
3069
0.179089
GCATGCTGGATCTCGTGACT
60.179
55.000
11.37
0.00
0.00
3.41
3003
3077
4.390264
CTGGATCTCGTGACTAGATACCA
58.610
47.826
6.85
10.84
33.94
3.25
3025
3099
5.104817
CCAGATTGCCTCCAAACCAAATATT
60.105
40.000
0.00
0.00
34.05
1.28
3026
3100
5.813672
CAGATTGCCTCCAAACCAAATATTG
59.186
40.000
0.00
0.00
34.05
1.90
3063
3140
4.261197
GCTCACTCCCTTTGTGTTTTACTG
60.261
45.833
0.00
0.00
36.83
2.74
3075
3155
8.903570
TTTGTGTTTTACTGTACTGAACAATG
57.096
30.769
6.77
0.00
37.74
2.82
3340
3420
1.068125
CGTGTACGACATCTCCACCAA
60.068
52.381
0.00
0.00
43.02
3.67
3390
3470
2.557059
CTACAGCGCGACCCACATCA
62.557
60.000
12.10
0.00
0.00
3.07
3491
3571
1.000955
GTGTTCAGGAAGAAGCCGAGA
59.999
52.381
0.00
0.00
36.78
4.04
3494
3574
1.561643
TCAGGAAGAAGCCGAGACAT
58.438
50.000
0.00
0.00
0.00
3.06
3641
3721
1.137282
GGGCAGAAGCAGAGGTACTAC
59.863
57.143
0.00
0.00
41.13
2.73
3785
3865
3.376918
GGGCAGCAAGTTCAGGCC
61.377
66.667
0.00
0.00
43.86
5.19
3786
3866
3.376918
GGCAGCAAGTTCAGGCCC
61.377
66.667
0.00
0.00
38.70
5.80
3787
3867
2.282745
GCAGCAAGTTCAGGCCCT
60.283
61.111
0.00
0.00
0.00
5.19
3788
3868
2.633509
GCAGCAAGTTCAGGCCCTG
61.634
63.158
3.69
3.69
0.00
4.45
3832
3912
3.492656
CGTGTTCAGGTTCAGGAGAAGAA
60.493
47.826
0.00
0.00
33.63
2.52
3910
4156
2.306799
CGAAGCTCTCAACTGCAAAC
57.693
50.000
0.00
0.00
0.00
2.93
3927
4173
2.106511
CAAACCCTGGAGTTCTTCCTCA
59.893
50.000
0.00
0.00
46.92
3.86
3929
4175
0.251634
CCCTGGAGTTCTTCCTCAGC
59.748
60.000
0.00
0.00
46.92
4.26
4139
4388
1.525923
CCATCCTGGTGCTCCTGAG
59.474
63.158
12.76
0.00
35.11
3.35
4195
4444
2.100252
CTCTTGGGCAATATGGTTGCTG
59.900
50.000
14.69
6.13
44.36
4.41
4197
4446
0.334335
TGGGCAATATGGTTGCTGGA
59.666
50.000
14.69
0.81
44.36
3.86
4199
4448
1.410153
GGGCAATATGGTTGCTGGAAG
59.590
52.381
14.69
0.00
44.36
3.46
4200
4449
1.410153
GGCAATATGGTTGCTGGAAGG
59.590
52.381
14.69
0.00
44.36
3.46
4201
4450
1.410153
GCAATATGGTTGCTGGAAGGG
59.590
52.381
9.60
0.00
41.87
3.95
4202
4451
2.949963
GCAATATGGTTGCTGGAAGGGA
60.950
50.000
9.60
0.00
41.87
4.20
4203
4452
3.364549
CAATATGGTTGCTGGAAGGGAA
58.635
45.455
0.00
0.00
0.00
3.97
4204
4453
2.806945
TATGGTTGCTGGAAGGGAAG
57.193
50.000
0.00
0.00
0.00
3.46
4205
4454
0.779997
ATGGTTGCTGGAAGGGAAGT
59.220
50.000
0.00
0.00
0.00
3.01
4206
4455
0.178992
TGGTTGCTGGAAGGGAAGTG
60.179
55.000
0.00
0.00
0.00
3.16
4207
4456
1.527433
GGTTGCTGGAAGGGAAGTGC
61.527
60.000
0.00
0.00
0.00
4.40
4208
4457
0.538287
GTTGCTGGAAGGGAAGTGCT
60.538
55.000
0.00
0.00
0.00
4.40
4209
4458
1.064003
TTGCTGGAAGGGAAGTGCTA
58.936
50.000
0.00
0.00
0.00
3.49
4210
4459
1.289160
TGCTGGAAGGGAAGTGCTAT
58.711
50.000
0.00
0.00
0.00
2.97
4211
4460
1.635487
TGCTGGAAGGGAAGTGCTATT
59.365
47.619
0.00
0.00
0.00
1.73
4212
4461
2.293170
GCTGGAAGGGAAGTGCTATTC
58.707
52.381
0.00
0.00
0.00
1.75
4213
4462
2.092699
GCTGGAAGGGAAGTGCTATTCT
60.093
50.000
2.25
0.00
0.00
2.40
4214
4463
3.539604
CTGGAAGGGAAGTGCTATTCTG
58.460
50.000
2.25
0.00
0.00
3.02
4215
4464
3.181329
TGGAAGGGAAGTGCTATTCTGA
58.819
45.455
2.25
0.00
0.00
3.27
4216
4465
3.198635
TGGAAGGGAAGTGCTATTCTGAG
59.801
47.826
2.25
0.00
0.00
3.35
4217
4466
2.998316
AGGGAAGTGCTATTCTGAGC
57.002
50.000
2.25
0.00
43.16
4.26
4218
4467
2.476199
AGGGAAGTGCTATTCTGAGCT
58.524
47.619
0.00
0.00
43.27
4.09
4219
4468
2.433970
AGGGAAGTGCTATTCTGAGCTC
59.566
50.000
6.82
6.82
43.27
4.09
4220
4469
2.468831
GGAAGTGCTATTCTGAGCTCG
58.531
52.381
9.64
4.19
43.27
5.03
4221
4470
2.099921
GGAAGTGCTATTCTGAGCTCGA
59.900
50.000
9.64
6.70
43.27
4.04
4222
4471
3.243704
GGAAGTGCTATTCTGAGCTCGAT
60.244
47.826
9.64
5.80
43.27
3.59
4223
4472
3.641437
AGTGCTATTCTGAGCTCGATC
57.359
47.619
9.64
0.00
43.27
3.69
4224
4473
3.221771
AGTGCTATTCTGAGCTCGATCT
58.778
45.455
9.64
0.00
43.27
2.75
4225
4474
3.253188
AGTGCTATTCTGAGCTCGATCTC
59.747
47.826
9.64
9.34
43.27
2.75
4226
4475
3.004210
GTGCTATTCTGAGCTCGATCTCA
59.996
47.826
17.41
17.41
43.27
3.27
4232
4481
0.310232
TGAGCTCGATCTCAGATGCG
59.690
55.000
14.72
0.00
38.11
4.73
4233
4482
1.003262
GAGCTCGATCTCAGATGCGC
61.003
60.000
11.31
0.00
33.41
6.09
4234
4483
2.021039
GCTCGATCTCAGATGCGCC
61.021
63.158
4.18
0.00
0.00
6.53
4235
4484
1.372748
CTCGATCTCAGATGCGCCC
60.373
63.158
4.18
0.00
0.00
6.13
4236
4485
2.732468
CGATCTCAGATGCGCCCG
60.732
66.667
4.18
0.00
0.00
6.13
4237
4486
2.419198
GATCTCAGATGCGCCCGT
59.581
61.111
4.18
0.00
0.00
5.28
4238
4487
1.227380
GATCTCAGATGCGCCCGTT
60.227
57.895
4.18
0.00
0.00
4.44
4239
4488
0.032130
GATCTCAGATGCGCCCGTTA
59.968
55.000
4.18
0.00
0.00
3.18
4240
4489
0.681733
ATCTCAGATGCGCCCGTTAT
59.318
50.000
4.18
0.00
0.00
1.89
4241
4490
0.032130
TCTCAGATGCGCCCGTTATC
59.968
55.000
4.18
0.00
0.00
1.75
4242
4491
0.032678
CTCAGATGCGCCCGTTATCT
59.967
55.000
4.18
2.61
0.00
1.98
4243
4492
1.269723
CTCAGATGCGCCCGTTATCTA
59.730
52.381
4.18
0.00
30.43
1.98
4244
4493
1.684450
TCAGATGCGCCCGTTATCTAA
59.316
47.619
4.18
0.00
30.43
2.10
4245
4494
2.101750
TCAGATGCGCCCGTTATCTAAA
59.898
45.455
4.18
0.00
30.43
1.85
4246
4495
3.067106
CAGATGCGCCCGTTATCTAAAT
58.933
45.455
4.18
0.00
30.43
1.40
4247
4496
3.123621
CAGATGCGCCCGTTATCTAAATC
59.876
47.826
4.18
0.00
30.43
2.17
4248
4497
1.493772
TGCGCCCGTTATCTAAATCG
58.506
50.000
4.18
0.00
0.00
3.34
4249
4498
0.163146
GCGCCCGTTATCTAAATCGC
59.837
55.000
0.00
0.00
34.61
4.58
4250
4499
0.788391
CGCCCGTTATCTAAATCGCC
59.212
55.000
0.00
0.00
0.00
5.54
4251
4500
1.154197
GCCCGTTATCTAAATCGCCC
58.846
55.000
0.00
0.00
0.00
6.13
4252
4501
1.425412
CCCGTTATCTAAATCGCCCG
58.575
55.000
0.00
0.00
0.00
6.13
4253
4502
1.269936
CCCGTTATCTAAATCGCCCGT
60.270
52.381
0.00
0.00
0.00
5.28
4254
4503
2.476821
CCGTTATCTAAATCGCCCGTT
58.523
47.619
0.00
0.00
0.00
4.44
4255
4504
2.473984
CCGTTATCTAAATCGCCCGTTC
59.526
50.000
0.00
0.00
0.00
3.95
4256
4505
2.152489
CGTTATCTAAATCGCCCGTTCG
59.848
50.000
0.00
0.00
0.00
3.95
4257
4506
1.774639
TATCTAAATCGCCCGTTCGC
58.225
50.000
0.00
0.00
0.00
4.70
4258
4507
0.179094
ATCTAAATCGCCCGTTCGCA
60.179
50.000
0.00
0.00
0.00
5.10
4259
4508
0.179094
TCTAAATCGCCCGTTCGCAT
60.179
50.000
0.00
0.00
0.00
4.73
4260
4509
0.232303
CTAAATCGCCCGTTCGCATC
59.768
55.000
0.00
0.00
0.00
3.91
4261
4510
0.179094
TAAATCGCCCGTTCGCATCT
60.179
50.000
0.00
0.00
0.00
2.90
4262
4511
0.179094
AAATCGCCCGTTCGCATCTA
60.179
50.000
0.00
0.00
0.00
1.98
4263
4512
0.597637
AATCGCCCGTTCGCATCTAG
60.598
55.000
0.00
0.00
0.00
2.43
4264
4513
1.452953
ATCGCCCGTTCGCATCTAGA
61.453
55.000
0.00
0.00
0.00
2.43
4265
4514
1.007271
CGCCCGTTCGCATCTAGAT
60.007
57.895
0.00
0.00
0.00
1.98
4266
4515
1.004277
CGCCCGTTCGCATCTAGATC
61.004
60.000
1.03
0.00
0.00
2.75
4267
4516
0.667792
GCCCGTTCGCATCTAGATCC
60.668
60.000
1.03
0.00
0.00
3.36
4268
4517
0.673985
CCCGTTCGCATCTAGATCCA
59.326
55.000
1.03
0.00
0.00
3.41
4269
4518
1.603172
CCCGTTCGCATCTAGATCCAC
60.603
57.143
1.03
0.00
0.00
4.02
4270
4519
1.067060
CCGTTCGCATCTAGATCCACA
59.933
52.381
1.03
0.00
0.00
4.17
4271
4520
2.120232
CGTTCGCATCTAGATCCACAC
58.880
52.381
1.03
0.00
0.00
3.82
4272
4521
2.474816
GTTCGCATCTAGATCCACACC
58.525
52.381
1.03
0.00
0.00
4.16
4273
4522
1.775385
TCGCATCTAGATCCACACCA
58.225
50.000
1.03
0.00
0.00
4.17
4274
4523
1.683385
TCGCATCTAGATCCACACCAG
59.317
52.381
1.03
0.00
0.00
4.00
4275
4524
1.871408
CGCATCTAGATCCACACCAGC
60.871
57.143
1.03
0.00
0.00
4.85
4276
4525
1.542108
GCATCTAGATCCACACCAGCC
60.542
57.143
1.03
0.00
0.00
4.85
4277
4526
1.071385
CATCTAGATCCACACCAGCCC
59.929
57.143
1.03
0.00
0.00
5.19
4295
4545
1.285641
CGTGCACAAATTTCGGCCT
59.714
52.632
18.64
0.00
0.00
5.19
4317
4567
0.107831
GCCCACCCACTATCGCAATA
59.892
55.000
0.00
0.00
0.00
1.90
4319
4569
2.494059
CCCACCCACTATCGCAATAAG
58.506
52.381
0.00
0.00
0.00
1.73
4360
4610
4.070552
GGAAGGCTCAGACGCGGT
62.071
66.667
12.47
0.00
0.00
5.68
4392
4642
1.136305
GGCCACAGCTCAGACGTAATA
59.864
52.381
0.00
0.00
39.73
0.98
4406
4656
1.268692
CGTAATAACGGGCGCAGTCTA
60.269
52.381
10.83
4.89
45.50
2.59
4407
4657
2.122564
GTAATAACGGGCGCAGTCTAC
58.877
52.381
10.83
7.83
0.00
2.59
4408
4658
0.533491
AATAACGGGCGCAGTCTACA
59.467
50.000
10.83
0.00
0.00
2.74
4409
4659
0.179119
ATAACGGGCGCAGTCTACAC
60.179
55.000
10.83
0.00
0.00
2.90
4410
4660
2.216750
TAACGGGCGCAGTCTACACC
62.217
60.000
10.83
0.00
0.00
4.16
4424
4674
2.092807
TCTACACCGGCCCCTTTATTTC
60.093
50.000
0.00
0.00
0.00
2.17
4430
4680
1.810412
CGGCCCCTTTATTTCTCTCCG
60.810
57.143
0.00
0.00
0.00
4.63
4434
4684
1.490910
CCCTTTATTTCTCTCCGCCCT
59.509
52.381
0.00
0.00
0.00
5.19
4435
4685
2.565841
CCTTTATTTCTCTCCGCCCTG
58.434
52.381
0.00
0.00
0.00
4.45
4439
4689
1.627297
ATTTCTCTCCGCCCTGTCCC
61.627
60.000
0.00
0.00
0.00
4.46
4442
4692
4.414956
TCTCCGCCCTGTCCCCAT
62.415
66.667
0.00
0.00
0.00
4.00
4481
4766
2.248248
CCGCCACCCTAGATCTGAATA
58.752
52.381
5.18
0.00
0.00
1.75
4488
4773
5.221541
CCACCCTAGATCTGAATAACCAGAC
60.222
48.000
5.18
0.00
44.93
3.51
4489
4774
5.600484
CACCCTAGATCTGAATAACCAGACT
59.400
44.000
5.18
0.00
44.93
3.24
4537
4822
6.229733
CAAAAATAAGCAAGATCACCCCAAA
58.770
36.000
0.00
0.00
0.00
3.28
4547
4832
4.082125
AGATCACCCCAAAGATTCAACAC
58.918
43.478
0.00
0.00
0.00
3.32
4579
4864
5.884232
TGCAAGAATCAGTAAGATCAAGCAT
59.116
36.000
0.00
0.00
35.39
3.79
4580
4865
6.183360
TGCAAGAATCAGTAAGATCAAGCATG
60.183
38.462
0.00
0.00
35.39
4.06
4581
4866
6.200100
CAAGAATCAGTAAGATCAAGCATGC
58.800
40.000
10.51
10.51
35.39
4.06
4591
4876
2.455674
TCAAGCATGCAACTACGACT
57.544
45.000
21.98
0.00
0.00
4.18
4605
4890
2.604046
ACGACTACAGCCATCATTCC
57.396
50.000
0.00
0.00
0.00
3.01
4632
4917
7.064490
CACCATGGGCAATTAATTAACTGAAAC
59.936
37.037
18.09
0.79
0.00
2.78
4635
4920
8.997323
CATGGGCAATTAATTAACTGAAACAAA
58.003
29.630
10.71
0.00
0.00
2.83
4638
4923
7.360861
GGGCAATTAATTAACTGAAACAAAGCC
60.361
37.037
10.71
4.78
0.00
4.35
4652
4939
7.327214
TGAAACAAAGCCAGATTTTTAACTGT
58.673
30.769
0.00
0.00
32.93
3.55
4654
4941
9.476202
GAAACAAAGCCAGATTTTTAACTGTAT
57.524
29.630
0.00
0.00
32.93
2.29
4670
4957
3.829948
CTGTATTTCAGCTTGCCAAGTG
58.170
45.455
6.28
3.76
37.36
3.16
4671
4958
2.030007
TGTATTTCAGCTTGCCAAGTGC
60.030
45.455
6.28
0.00
41.77
4.40
4672
4959
6.341127
CTGTATTTCAGCTTGCCAAGTGCA
62.341
45.833
6.28
0.00
42.16
4.57
4673
4960
7.732976
CTGTATTTCAGCTTGCCAAGTGCAA
62.733
44.000
6.28
0.00
46.21
4.08
4691
4978
2.597272
GCAAATCAGTGCAACGCAAAAC
60.597
45.455
0.00
0.00
45.86
2.43
4693
4980
0.743688
ATCAGTGCAACGCAAAACCA
59.256
45.000
0.00
0.00
45.86
3.67
4694
4981
0.100325
TCAGTGCAACGCAAAACCAG
59.900
50.000
0.00
0.00
45.86
4.00
4705
4992
5.059404
ACGCAAAACCAGAAATAATCCAG
57.941
39.130
0.00
0.00
0.00
3.86
4715
5002
6.207417
ACCAGAAATAATCCAGAACACAACAG
59.793
38.462
0.00
0.00
0.00
3.16
4716
5003
6.088824
CAGAAATAATCCAGAACACAACAGC
58.911
40.000
0.00
0.00
0.00
4.40
4718
5005
6.435277
AGAAATAATCCAGAACACAACAGCAT
59.565
34.615
0.00
0.00
0.00
3.79
4734
5021
6.206048
ACAACAGCATAGGTTTACAACTAACC
59.794
38.462
0.00
0.00
44.34
2.85
4749
5036
1.950909
CTAACCAAAAACAGCCCGTCA
59.049
47.619
0.00
0.00
0.00
4.35
4751
5038
0.106918
ACCAAAAACAGCCCGTCAGA
60.107
50.000
0.00
0.00
0.00
3.27
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
3
4
0.909623
CCTCCATGGTACCCGACTTT
59.090
55.000
12.58
0.00
0.00
2.66
8
9
0.819259
CAATGCCTCCATGGTACCCG
60.819
60.000
12.58
0.00
38.35
5.28
51
52
1.103398
GGATCTGATTGTTGGGCGGG
61.103
60.000
0.00
0.00
0.00
6.13
63
64
1.140452
GCTTGAGCATCTGGGATCTGA
59.860
52.381
0.00
0.00
41.59
3.27
110
111
1.369091
CTAGCATTGTCGCCCACACC
61.369
60.000
0.00
0.00
33.41
4.16
122
123
0.397535
CCATGGCCCAACCTAGCATT
60.398
55.000
0.00
0.00
40.22
3.56
124
125
2.682846
CCATGGCCCAACCTAGCA
59.317
61.111
0.00
0.00
40.22
3.49
149
150
1.599047
CATCCGCTGAAGGTCACCT
59.401
57.895
0.00
0.00
33.87
4.00
227
247
1.961180
GCGGATAGTGCAGAGGTGGT
61.961
60.000
0.00
0.00
0.00
4.16
279
299
2.166870
ACATCGTTCCCGTAGCATTGTA
59.833
45.455
0.00
0.00
35.01
2.41
280
300
1.066430
ACATCGTTCCCGTAGCATTGT
60.066
47.619
0.00
0.00
35.01
2.71
352
382
0.174162
CGTGTACCCTTCCCTTACCG
59.826
60.000
0.00
0.00
0.00
4.02
355
385
2.307496
TGTCGTGTACCCTTCCCTTA
57.693
50.000
0.00
0.00
0.00
2.69
356
386
1.426751
TTGTCGTGTACCCTTCCCTT
58.573
50.000
0.00
0.00
0.00
3.95
361
391
0.763035
AGCCTTTGTCGTGTACCCTT
59.237
50.000
0.00
0.00
0.00
3.95
382
412
2.489971
TGCTCGATCAACTTTTTCGGT
58.510
42.857
0.00
0.00
33.82
4.69
420
450
1.670083
CCGACGAAAACAGACCCCC
60.670
63.158
0.00
0.00
0.00
5.40
423
453
0.249573
TCACCCGACGAAAACAGACC
60.250
55.000
0.00
0.00
0.00
3.85
437
467
2.514458
AATGTGTGGGAATCTCACCC
57.486
50.000
11.18
0.00
46.87
4.61
498
528
8.192110
TGGTTCTACACTTTAAATGTGGTTTTC
58.808
33.333
16.79
8.22
39.52
2.29
569
600
3.042059
TCTATTTCGGCTTACCTCCCT
57.958
47.619
0.00
0.00
0.00
4.20
570
601
3.557264
CCATCTATTTCGGCTTACCTCCC
60.557
52.174
0.00
0.00
0.00
4.30
638
669
2.029828
CGCCTCTATCGAGTGCCTAATT
60.030
50.000
0.00
0.00
35.43
1.40
720
751
3.814283
GCAGCATCTTTCTCAGGATTAGG
59.186
47.826
0.00
0.00
0.00
2.69
730
761
2.641305
GGAGTGATGCAGCATCTTTCT
58.359
47.619
31.02
24.94
41.06
2.52
759
790
0.324275
TGGGGCCAGATAAACTTGGC
60.324
55.000
4.39
6.95
39.93
4.52
760
791
2.230130
TTGGGGCCAGATAAACTTGG
57.770
50.000
4.39
0.00
0.00
3.61
949
980
0.926293
AGGAGAGGAGAGGACTGAGG
59.074
60.000
0.00
0.00
0.00
3.86
953
984
1.564348
GAGTGAGGAGAGGAGAGGACT
59.436
57.143
0.00
0.00
0.00
3.85
954
985
1.409661
GGAGTGAGGAGAGGAGAGGAC
60.410
61.905
0.00
0.00
0.00
3.85
955
986
0.923358
GGAGTGAGGAGAGGAGAGGA
59.077
60.000
0.00
0.00
0.00
3.71
956
987
0.106217
GGGAGTGAGGAGAGGAGAGG
60.106
65.000
0.00
0.00
0.00
3.69
957
988
0.106217
GGGGAGTGAGGAGAGGAGAG
60.106
65.000
0.00
0.00
0.00
3.20
958
989
1.927569
CGGGGAGTGAGGAGAGGAGA
61.928
65.000
0.00
0.00
0.00
3.71
959
990
1.454847
CGGGGAGTGAGGAGAGGAG
60.455
68.421
0.00
0.00
0.00
3.69
1431
1469
1.003812
CCGGTGTCAAGAACCCCAATA
59.996
52.381
0.00
0.00
33.88
1.90
1434
1472
2.833227
CCGGTGTCAAGAACCCCA
59.167
61.111
0.00
0.00
33.88
4.96
1719
1757
2.149803
CTGTGGCGTACCCGAACAGA
62.150
60.000
12.00
0.00
45.56
3.41
1824
1862
3.512516
GCGGAGTCAATGCCAGCC
61.513
66.667
0.00
0.00
0.00
4.85
2385
2423
1.268948
GCGTAGTCCCGTATCTTGTCC
60.269
57.143
0.00
0.00
0.00
4.02
2766
2837
2.538737
GGCGCCTTTTTGAAACAAAAGC
60.539
45.455
22.15
9.33
35.33
3.51
2886
2960
8.603242
TTTGAAAGGTTTCACATCTAGTCTAC
57.397
34.615
4.61
0.00
45.99
2.59
2949
3023
5.163561
TGCTAGAAACCACTCAAACCAAAAG
60.164
40.000
0.00
0.00
0.00
2.27
2995
3069
4.141482
GGTTTGGAGGCAATCTGGTATCTA
60.141
45.833
0.00
0.00
0.00
1.98
3003
3077
5.721000
TCAATATTTGGTTTGGAGGCAATCT
59.279
36.000
0.00
0.00
0.00
2.40
3025
3099
5.163405
GGGAGTGAGCTGAATATTGTACTCA
60.163
44.000
0.00
0.00
36.06
3.41
3026
3100
5.069781
AGGGAGTGAGCTGAATATTGTACTC
59.930
44.000
0.00
0.00
34.19
2.59
3063
3140
5.700832
TCACAATCAGACCATTGTTCAGTAC
59.299
40.000
0.00
0.00
43.17
2.73
3075
3155
2.681848
CTGCAGGAATCACAATCAGACC
59.318
50.000
5.57
0.00
0.00
3.85
3408
3488
4.351938
CGGGCACGAGACGTTGGA
62.352
66.667
0.00
0.00
44.60
3.53
3491
3571
1.819288
CTCCTGTACCTCACGACATGT
59.181
52.381
0.00
0.00
0.00
3.21
3494
3574
0.611062
CCCTCCTGTACCTCACGACA
60.611
60.000
0.00
0.00
0.00
4.35
3641
3721
1.359848
CCTTGGATTCGAAGGTGACG
58.640
55.000
16.90
0.00
36.05
4.35
3785
3865
0.823460
AACAAACACCAACAGGCAGG
59.177
50.000
0.00
0.00
0.00
4.85
3786
3866
2.671130
AAACAAACACCAACAGGCAG
57.329
45.000
0.00
0.00
0.00
4.85
3787
3867
3.511934
ACTAAAACAAACACCAACAGGCA
59.488
39.130
0.00
0.00
0.00
4.75
3788
3868
4.109766
GACTAAAACAAACACCAACAGGC
58.890
43.478
0.00
0.00
0.00
4.85
3941
4187
2.727684
GAAACGAAGTCCGGCGAGC
61.728
63.158
9.30
0.00
45.00
5.03
4139
4388
7.221452
ACGATCTTTTCATCATTTTGCATTAGC
59.779
33.333
0.00
0.00
42.57
3.09
4140
4389
8.624701
ACGATCTTTTCATCATTTTGCATTAG
57.375
30.769
0.00
0.00
0.00
1.73
4195
4444
3.802866
CTCAGAATAGCACTTCCCTTCC
58.197
50.000
0.00
0.00
0.00
3.46
4197
4446
2.843113
AGCTCAGAATAGCACTTCCCTT
59.157
45.455
0.00
0.00
45.30
3.95
4199
4448
2.801342
CGAGCTCAGAATAGCACTTCCC
60.801
54.545
15.40
0.00
45.30
3.97
4200
4449
2.099921
TCGAGCTCAGAATAGCACTTCC
59.900
50.000
15.40
0.00
45.30
3.46
4201
4450
3.428746
TCGAGCTCAGAATAGCACTTC
57.571
47.619
15.40
0.00
45.30
3.01
4202
4451
3.636300
AGATCGAGCTCAGAATAGCACTT
59.364
43.478
15.40
0.00
45.30
3.16
4203
4452
3.221771
AGATCGAGCTCAGAATAGCACT
58.778
45.455
15.40
4.44
45.30
4.40
4204
4453
3.004210
TGAGATCGAGCTCAGAATAGCAC
59.996
47.826
28.42
0.28
45.30
4.40
4205
4454
3.217626
TGAGATCGAGCTCAGAATAGCA
58.782
45.455
28.42
4.76
45.30
3.49
4206
4455
3.913548
TGAGATCGAGCTCAGAATAGC
57.086
47.619
28.42
1.84
39.84
2.97
4213
4462
0.310232
CGCATCTGAGATCGAGCTCA
59.690
55.000
29.74
29.74
42.31
4.26
4214
4463
1.003262
GCGCATCTGAGATCGAGCTC
61.003
60.000
23.45
23.45
35.46
4.09
4215
4464
1.007502
GCGCATCTGAGATCGAGCT
60.008
57.895
1.00
1.00
0.00
4.09
4216
4465
2.021039
GGCGCATCTGAGATCGAGC
61.021
63.158
10.83
12.71
0.00
5.03
4217
4466
1.372748
GGGCGCATCTGAGATCGAG
60.373
63.158
10.83
5.30
0.00
4.04
4218
4467
2.730733
GGGCGCATCTGAGATCGA
59.269
61.111
10.83
0.00
0.00
3.59
4219
4468
2.732468
CGGGCGCATCTGAGATCG
60.732
66.667
10.83
9.04
0.00
3.69
4220
4469
0.032130
TAACGGGCGCATCTGAGATC
59.968
55.000
10.83
0.00
0.00
2.75
4221
4470
0.681733
ATAACGGGCGCATCTGAGAT
59.318
50.000
10.83
0.00
0.00
2.75
4222
4471
0.032130
GATAACGGGCGCATCTGAGA
59.968
55.000
10.83
0.00
0.00
3.27
4223
4472
0.032678
AGATAACGGGCGCATCTGAG
59.967
55.000
10.83
0.00
0.00
3.35
4224
4473
1.324383
TAGATAACGGGCGCATCTGA
58.676
50.000
10.83
0.00
31.60
3.27
4225
4474
2.148916
TTAGATAACGGGCGCATCTG
57.851
50.000
10.83
0.00
31.60
2.90
4226
4475
2.902705
TTTAGATAACGGGCGCATCT
57.097
45.000
10.83
11.19
33.66
2.90
4227
4476
2.092211
CGATTTAGATAACGGGCGCATC
59.908
50.000
10.83
2.63
0.00
3.91
4228
4477
2.066262
CGATTTAGATAACGGGCGCAT
58.934
47.619
10.83
0.00
0.00
4.73
4229
4478
1.493772
CGATTTAGATAACGGGCGCA
58.506
50.000
10.83
0.00
0.00
6.09
4230
4479
0.163146
GCGATTTAGATAACGGGCGC
59.837
55.000
0.00
0.00
36.35
6.53
4231
4480
0.788391
GGCGATTTAGATAACGGGCG
59.212
55.000
0.00
0.00
0.00
6.13
4232
4481
1.154197
GGGCGATTTAGATAACGGGC
58.846
55.000
0.00
0.00
0.00
6.13
4233
4482
1.269936
ACGGGCGATTTAGATAACGGG
60.270
52.381
0.00
0.00
0.00
5.28
4234
4483
2.144482
ACGGGCGATTTAGATAACGG
57.856
50.000
0.00
0.00
0.00
4.44
4235
4484
2.152489
CGAACGGGCGATTTAGATAACG
59.848
50.000
0.00
0.00
0.00
3.18
4236
4485
2.097056
GCGAACGGGCGATTTAGATAAC
60.097
50.000
3.29
0.00
0.00
1.89
4237
4486
2.129607
GCGAACGGGCGATTTAGATAA
58.870
47.619
3.29
0.00
0.00
1.75
4238
4487
1.067364
TGCGAACGGGCGATTTAGATA
59.933
47.619
3.29
0.00
35.06
1.98
4239
4488
0.179094
TGCGAACGGGCGATTTAGAT
60.179
50.000
3.29
0.00
35.06
1.98
4240
4489
0.179094
ATGCGAACGGGCGATTTAGA
60.179
50.000
3.29
0.00
35.06
2.10
4241
4490
0.232303
GATGCGAACGGGCGATTTAG
59.768
55.000
3.29
0.00
35.06
1.85
4242
4491
0.179094
AGATGCGAACGGGCGATTTA
60.179
50.000
3.29
0.00
35.06
1.40
4243
4492
0.179094
TAGATGCGAACGGGCGATTT
60.179
50.000
3.29
0.00
35.06
2.17
4244
4493
0.597637
CTAGATGCGAACGGGCGATT
60.598
55.000
3.29
0.00
35.06
3.34
4245
4494
1.007271
CTAGATGCGAACGGGCGAT
60.007
57.895
3.29
0.00
35.06
4.58
4246
4495
1.452953
ATCTAGATGCGAACGGGCGA
61.453
55.000
3.89
0.00
35.06
5.54
4247
4496
1.004277
GATCTAGATGCGAACGGGCG
61.004
60.000
10.74
0.00
35.06
6.13
4248
4497
0.667792
GGATCTAGATGCGAACGGGC
60.668
60.000
10.74
0.00
0.00
6.13
4249
4498
0.673985
TGGATCTAGATGCGAACGGG
59.326
55.000
18.13
0.00
31.21
5.28
4250
4499
1.067060
TGTGGATCTAGATGCGAACGG
59.933
52.381
18.13
0.00
31.21
4.44
4251
4500
2.120232
GTGTGGATCTAGATGCGAACG
58.880
52.381
18.13
0.00
31.21
3.95
4252
4501
2.159099
TGGTGTGGATCTAGATGCGAAC
60.159
50.000
18.13
17.06
31.21
3.95
4253
4502
2.101415
CTGGTGTGGATCTAGATGCGAA
59.899
50.000
18.13
7.10
31.21
4.70
4254
4503
1.683385
CTGGTGTGGATCTAGATGCGA
59.317
52.381
18.13
5.80
31.21
5.10
4255
4504
1.871408
GCTGGTGTGGATCTAGATGCG
60.871
57.143
18.13
5.18
31.21
4.73
4256
4505
1.542108
GGCTGGTGTGGATCTAGATGC
60.542
57.143
16.76
16.76
0.00
3.91
4257
4506
1.071385
GGGCTGGTGTGGATCTAGATG
59.929
57.143
10.74
0.00
0.00
2.90
4258
4507
1.428869
GGGCTGGTGTGGATCTAGAT
58.571
55.000
4.47
4.47
0.00
1.98
4259
4508
1.043116
CGGGCTGGTGTGGATCTAGA
61.043
60.000
0.00
0.00
0.00
2.43
4260
4509
1.330655
ACGGGCTGGTGTGGATCTAG
61.331
60.000
0.00
0.00
0.00
2.43
4261
4510
1.305802
ACGGGCTGGTGTGGATCTA
60.306
57.895
0.00
0.00
0.00
1.98
4262
4511
2.607750
ACGGGCTGGTGTGGATCT
60.608
61.111
0.00
0.00
0.00
2.75
4263
4512
2.436646
CACGGGCTGGTGTGGATC
60.437
66.667
0.00
0.00
33.24
3.36
4264
4513
4.722700
GCACGGGCTGGTGTGGAT
62.723
66.667
0.00
0.00
40.08
3.41
4268
4517
4.497984
TTGTGCACGGGCTGGTGT
62.498
61.111
12.74
0.00
41.91
4.16
4269
4518
2.086251
AATTTGTGCACGGGCTGGTG
62.086
55.000
12.74
1.29
41.91
4.17
4270
4519
1.398958
AAATTTGTGCACGGGCTGGT
61.399
50.000
12.74
0.00
41.91
4.00
4271
4520
0.667184
GAAATTTGTGCACGGGCTGG
60.667
55.000
12.74
0.00
41.91
4.85
4272
4521
1.003262
CGAAATTTGTGCACGGGCTG
61.003
55.000
12.74
0.00
41.91
4.85
4273
4522
1.285641
CGAAATTTGTGCACGGGCT
59.714
52.632
12.74
0.00
41.91
5.19
4274
4523
1.732683
CCGAAATTTGTGCACGGGC
60.733
57.895
13.13
0.34
39.92
6.13
4275
4524
1.732683
GCCGAAATTTGTGCACGGG
60.733
57.895
13.13
5.62
43.15
5.28
4276
4525
1.732683
GGCCGAAATTTGTGCACGG
60.733
57.895
13.13
8.89
45.26
4.94
4277
4526
0.318614
AAGGCCGAAATTTGTGCACG
60.319
50.000
13.13
0.00
0.00
5.34
4295
4545
2.994699
CGATAGTGGGTGGGCCAA
59.005
61.111
8.40
0.00
36.17
4.52
4305
4555
2.794910
CGTCCCACTTATTGCGATAGTG
59.205
50.000
12.87
12.87
39.35
2.74
4360
4610
2.107041
CTGTGGCCCAGAACGGTGTA
62.107
60.000
14.21
0.00
44.49
2.90
4392
4642
2.048503
GTGTAGACTGCGCCCGTT
60.049
61.111
4.18
0.00
0.00
4.44
4401
4651
0.252375
TAAAGGGGCCGGTGTAGACT
60.252
55.000
1.90
0.00
0.00
3.24
4406
4656
0.702316
AGAAATAAAGGGGCCGGTGT
59.298
50.000
1.90
0.00
0.00
4.16
4407
4657
1.064685
AGAGAAATAAAGGGGCCGGTG
60.065
52.381
1.90
0.00
0.00
4.94
4408
4658
1.212195
GAGAGAAATAAAGGGGCCGGT
59.788
52.381
1.90
0.00
0.00
5.28
4409
4659
1.477014
GGAGAGAAATAAAGGGGCCGG
60.477
57.143
0.00
0.00
0.00
6.13
4410
4660
1.810412
CGGAGAGAAATAAAGGGGCCG
60.810
57.143
0.00
0.00
0.00
6.13
4411
4661
1.968704
CGGAGAGAAATAAAGGGGCC
58.031
55.000
0.00
0.00
0.00
5.80
4435
4685
4.335416
TGTGAAAGAATCTTGATGGGGAC
58.665
43.478
0.00
0.00
0.00
4.46
4439
4689
3.730061
GCGCTGTGAAAGAATCTTGATGG
60.730
47.826
0.00
0.00
0.00
3.51
4442
4692
1.806542
GGCGCTGTGAAAGAATCTTGA
59.193
47.619
7.64
0.00
0.00
3.02
4481
4766
7.123547
TGGTTTGTTCTTTTGAATAGTCTGGTT
59.876
33.333
0.00
0.00
40.94
3.67
4488
4773
8.081633
TGCAGTATGGTTTGTTCTTTTGAATAG
58.918
33.333
0.00
0.00
37.40
1.73
4489
4774
7.946207
TGCAGTATGGTTTGTTCTTTTGAATA
58.054
30.769
0.00
0.00
37.40
1.75
4496
4781
9.260002
CTTATTTTTGCAGTATGGTTTGTTCTT
57.740
29.630
0.00
0.00
35.86
2.52
4537
4822
7.275888
TCTTGCAATTTGTAGTGTTGAATCT
57.724
32.000
0.00
0.00
0.00
2.40
4547
4832
9.713740
GATCTTACTGATTCTTGCAATTTGTAG
57.286
33.333
0.00
0.00
35.14
2.74
4579
4864
0.963225
TGGCTGTAGTCGTAGTTGCA
59.037
50.000
0.00
0.00
0.00
4.08
4580
4865
2.194271
GATGGCTGTAGTCGTAGTTGC
58.806
52.381
0.00
0.00
0.00
4.17
4581
4866
3.503827
TGATGGCTGTAGTCGTAGTTG
57.496
47.619
0.00
0.00
0.00
3.16
4591
4876
1.294041
TGGTGGGAATGATGGCTGTA
58.706
50.000
0.00
0.00
0.00
2.74
4605
4890
5.128499
TCAGTTAATTAATTGCCCATGGTGG
59.872
40.000
11.73
0.00
37.25
4.61
4624
4909
8.040727
AGTTAAAAATCTGGCTTTGTTTCAGTT
58.959
29.630
0.00
0.00
0.00
3.16
4632
4917
9.474920
TGAAATACAGTTAAAAATCTGGCTTTG
57.525
29.630
0.00
0.00
36.17
2.77
4670
4957
1.207390
TTTGCGTTGCACTGATTTGC
58.793
45.000
0.00
0.00
38.71
3.68
4671
4958
2.033832
GGTTTTGCGTTGCACTGATTTG
60.034
45.455
0.00
0.00
38.71
2.32
4672
4959
2.200899
GGTTTTGCGTTGCACTGATTT
58.799
42.857
0.00
0.00
38.71
2.17
4673
4960
1.135915
TGGTTTTGCGTTGCACTGATT
59.864
42.857
0.00
0.00
38.71
2.57
4674
4961
0.743688
TGGTTTTGCGTTGCACTGAT
59.256
45.000
0.00
0.00
38.71
2.90
4675
4962
0.100325
CTGGTTTTGCGTTGCACTGA
59.900
50.000
0.00
0.00
38.71
3.41
4676
4963
0.100325
TCTGGTTTTGCGTTGCACTG
59.900
50.000
0.00
0.00
38.71
3.66
4685
4972
6.366061
GTGTTCTGGATTATTTCTGGTTTTGC
59.634
38.462
0.00
0.00
0.00
3.68
4691
4978
6.573664
TGTTGTGTTCTGGATTATTTCTGG
57.426
37.500
0.00
0.00
0.00
3.86
4693
4980
5.769662
TGCTGTTGTGTTCTGGATTATTTCT
59.230
36.000
0.00
0.00
0.00
2.52
4694
4981
6.012658
TGCTGTTGTGTTCTGGATTATTTC
57.987
37.500
0.00
0.00
0.00
2.17
4705
4992
5.682943
TGTAAACCTATGCTGTTGTGTTC
57.317
39.130
0.00
0.00
0.00
3.18
4734
5021
0.310854
GGTCTGACGGGCTGTTTTTG
59.689
55.000
0.00
0.00
0.00
2.44
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.