Multiple sequence alignment - TraesCS7D01G211800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G211800 chr7D 100.000 6454 0 0 1 6454 169916501 169910048 0.000000e+00 11919.0
1 TraesCS7D01G211800 chr7D 86.716 271 29 5 1200 1468 504174825 504175090 1.760000e-75 294.0
2 TraesCS7D01G211800 chr7D 82.297 209 14 9 6257 6447 72524533 72524736 6.700000e-35 159.0
3 TraesCS7D01G211800 chr7D 97.183 71 2 0 2622 2692 169913773 169913703 3.160000e-23 121.0
4 TraesCS7D01G211800 chr7D 97.183 71 2 0 2729 2799 169913880 169913810 3.160000e-23 121.0
5 TraesCS7D01G211800 chr7D 76.389 144 22 11 2583 2720 169913782 169913919 4.180000e-07 67.6
6 TraesCS7D01G211800 chr7B 92.771 2739 103 39 1 2692 135583655 135580965 0.000000e+00 3873.0
7 TraesCS7D01G211800 chr7B 94.832 1277 44 8 3469 4742 135580364 135579107 0.000000e+00 1973.0
8 TraesCS7D01G211800 chr7B 92.238 992 51 10 4782 5752 135579122 135578136 0.000000e+00 1382.0
9 TraesCS7D01G211800 chr7B 94.118 680 24 7 2729 3404 135581034 135580367 0.000000e+00 1020.0
10 TraesCS7D01G211800 chr7B 86.347 271 30 5 1200 1468 532275765 532276030 8.190000e-74 289.0
11 TraesCS7D01G211800 chr7A 92.484 2741 109 21 1 2690 172470340 172467646 0.000000e+00 3831.0
12 TraesCS7D01G211800 chr7A 95.514 2229 82 12 3469 5690 172467035 172464818 0.000000e+00 3546.0
13 TraesCS7D01G211800 chr7A 94.228 693 25 7 2729 3414 172467714 172467030 0.000000e+00 1044.0
14 TraesCS7D01G211800 chr7A 85.609 271 32 5 1200 1468 571701720 571701985 1.770000e-70 278.0
15 TraesCS7D01G211800 chr7A 92.958 71 4 1 5688 5757 172464736 172464666 1.140000e-17 102.0
16 TraesCS7D01G211800 chr7A 94.595 37 1 1 2685 2720 172467717 172467753 1.000000e-03 56.5
17 TraesCS7D01G211800 chr2D 90.529 718 36 17 5757 6454 440633541 440632836 0.000000e+00 920.0
18 TraesCS7D01G211800 chr2D 89.286 56 6 0 1588 1643 58778074 58778129 3.230000e-08 71.3
19 TraesCS7D01G211800 chr2D 95.455 44 2 0 3411 3454 296361961 296362004 3.230000e-08 71.3
20 TraesCS7D01G211800 chr6D 89.675 707 45 15 5756 6443 20266076 20266773 0.000000e+00 876.0
21 TraesCS7D01G211800 chr6D 83.125 480 61 14 1180 1643 381999852 381999377 2.780000e-113 420.0
22 TraesCS7D01G211800 chr3B 87.656 721 45 18 5756 6454 166131566 166130868 0.000000e+00 798.0
23 TraesCS7D01G211800 chr4D 86.732 716 55 17 5756 6454 491521124 491520432 0.000000e+00 760.0
24 TraesCS7D01G211800 chr3D 85.048 729 72 22 5752 6454 14451693 14452410 0.000000e+00 708.0
25 TraesCS7D01G211800 chr3D 97.297 37 1 0 3407 3443 25199429 25199393 5.400000e-06 63.9
26 TraesCS7D01G211800 chr4A 83.081 727 71 29 5757 6454 442790251 442790954 1.190000e-171 614.0
27 TraesCS7D01G211800 chr5A 83.193 714 72 28 5756 6454 565626679 565625999 1.540000e-170 610.0
28 TraesCS7D01G211800 chr5A 96.875 32 0 1 6202 6232 627786370 627786401 1.200000e-02 52.8
29 TraesCS7D01G211800 chr6B 82.708 480 63 14 1180 1643 570982500 570982025 6.020000e-110 409.0
30 TraesCS7D01G211800 chr6B 93.478 46 2 1 3399 3443 576856724 576856679 4.180000e-07 67.6
31 TraesCS7D01G211800 chr6A 82.609 483 61 16 1180 1643 523949646 523949168 7.790000e-109 405.0
32 TraesCS7D01G211800 chr6A 79.273 275 53 4 5193 5466 523945170 523944899 8.540000e-44 189.0
33 TraesCS7D01G211800 chr6A 92.857 42 2 1 3397 3437 25688532 25688573 6.990000e-05 60.2
34 TraesCS7D01G211800 chr1D 85.846 325 36 7 3715 4029 7919415 7919739 2.880000e-88 337.0
35 TraesCS7D01G211800 chr1A 82.920 363 33 12 6100 6453 20463686 20463344 3.780000e-77 300.0
36 TraesCS7D01G211800 chr1B 82.164 342 39 9 3715 4034 10111920 10112261 2.290000e-69 274.0
37 TraesCS7D01G211800 chr1B 89.655 58 2 3 3411 3465 619685431 619685487 3.230000e-08 71.3
38 TraesCS7D01G211800 chr1B 90.909 44 4 0 3399 3442 677323855 677323898 6.990000e-05 60.2
39 TraesCS7D01G211800 chr1B 100.000 29 0 0 3445 3473 673175836 673175808 3.000000e-03 54.7
40 TraesCS7D01G211800 chr2B 84.585 253 34 3 1195 1446 91257421 91257669 5.000000e-61 246.0
41 TraesCS7D01G211800 chr2B 87.324 71 6 3 3398 3467 71396480 71396548 1.930000e-10 78.7
42 TraesCS7D01G211800 chr2B 89.286 56 6 0 1588 1643 91257829 91257884 3.230000e-08 71.3
43 TraesCS7D01G211800 chr2B 100.000 37 0 0 3407 3443 375132093 375132057 1.160000e-07 69.4
44 TraesCS7D01G211800 chr2B 91.304 46 3 1 3399 3443 58325775 58325730 1.940000e-05 62.1
45 TraesCS7D01G211800 chr2A 84.082 245 34 3 1195 1438 59557957 59557717 1.400000e-56 231.0
46 TraesCS7D01G211800 chr2A 90.566 53 5 0 1591 1643 59568127 59568075 3.230000e-08 71.3
47 TraesCS7D01G211800 chr2A 94.737 38 1 1 3440 3477 517812831 517812795 2.510000e-04 58.4
48 TraesCS7D01G211800 chr5B 97.143 35 1 0 5756 5790 46022403 46022437 6.990000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G211800 chr7D 169910048 169916501 6453 True 4053.666667 11919 98.12200 1 6454 3 chr7D.!!$R1 6453
1 TraesCS7D01G211800 chr7B 135578136 135583655 5519 True 2062.000000 3873 93.48975 1 5752 4 chr7B.!!$R1 5751
2 TraesCS7D01G211800 chr7A 172464666 172470340 5674 True 2130.750000 3831 93.79600 1 5757 4 chr7A.!!$R1 5756
3 TraesCS7D01G211800 chr2D 440632836 440633541 705 True 920.000000 920 90.52900 5757 6454 1 chr2D.!!$R1 697
4 TraesCS7D01G211800 chr6D 20266076 20266773 697 False 876.000000 876 89.67500 5756 6443 1 chr6D.!!$F1 687
5 TraesCS7D01G211800 chr3B 166130868 166131566 698 True 798.000000 798 87.65600 5756 6454 1 chr3B.!!$R1 698
6 TraesCS7D01G211800 chr4D 491520432 491521124 692 True 760.000000 760 86.73200 5756 6454 1 chr4D.!!$R1 698
7 TraesCS7D01G211800 chr3D 14451693 14452410 717 False 708.000000 708 85.04800 5752 6454 1 chr3D.!!$F1 702
8 TraesCS7D01G211800 chr4A 442790251 442790954 703 False 614.000000 614 83.08100 5757 6454 1 chr4A.!!$F1 697
9 TraesCS7D01G211800 chr5A 565625999 565626679 680 True 610.000000 610 83.19300 5756 6454 1 chr5A.!!$R1 698
10 TraesCS7D01G211800 chr6A 523944899 523949646 4747 True 297.000000 405 80.94100 1180 5466 2 chr6A.!!$R1 4286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 719 0.033894 TTAATGGAGGTTTCGGGCCC 60.034 55.000 13.57 13.57 0.00 5.80 F
805 855 0.318441 TGCTCTGCGCTACAAAGTCT 59.682 50.000 9.73 0.00 40.11 3.24 F
811 861 1.007580 GCGCTACAAAGTCTAAGCCC 58.992 55.000 0.00 0.00 0.00 5.19 F
1173 1258 1.582610 TTCTTTCATGGCGGCGGTTC 61.583 55.000 9.78 0.00 0.00 3.62 F
1666 1766 2.018086 CCTCCTCCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69 F
3419 3822 0.319405 AAAACCACTACTCCGTCCCG 59.681 55.000 0.00 0.00 0.00 5.14 F
5129 6379 0.469331 AGGTCAACGGGTCAGACTCA 60.469 55.000 0.15 0.00 32.98 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 1896 0.025513 GCTTACATTCGTGCTGCTCG 59.974 55.000 17.08 17.08 0.0 5.03 R
1967 2143 2.614057 GTCACAACTCACAAACCCTCAG 59.386 50.000 0.00 0.00 0.0 3.35 R
2320 2499 3.466836 TGCGGTCAACTTATCATCATCC 58.533 45.455 0.00 0.00 0.0 3.51 R
3084 3283 1.067565 CAACTTCTCTCAGCACGGCTA 60.068 52.381 0.00 0.00 36.4 3.93 R
3535 4559 1.134965 GGGATTCTGGACTCGACACAG 60.135 57.143 0.97 0.97 0.0 3.66 R
5324 6574 0.807667 CGATCTTCTTCACCAGGCCG 60.808 60.000 0.00 0.00 0.0 6.13 R
5951 7352 0.456628 TGGTCGACGTCTGTGTGAAA 59.543 50.000 14.70 0.00 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.205784 CGCTTTGACTTTCATAAAAAGGACA 58.794 36.000 2.91 0.60 0.00 4.02
27 28 6.142320 CGCTTTGACTTTCATAAAAAGGACAC 59.858 38.462 2.91 0.00 0.00 3.67
34 35 5.538849 TTCATAAAAAGGACACCCCAAAC 57.461 39.130 0.00 0.00 37.41 2.93
168 169 9.357161 TGTTTTATTAATGGATTATTACGCCCT 57.643 29.630 0.00 0.00 31.11 5.19
177 178 6.640518 TGGATTATTACGCCCTTCATCTATC 58.359 40.000 0.00 0.00 0.00 2.08
178 179 6.212589 TGGATTATTACGCCCTTCATCTATCA 59.787 38.462 0.00 0.00 0.00 2.15
179 180 7.092891 TGGATTATTACGCCCTTCATCTATCAT 60.093 37.037 0.00 0.00 0.00 2.45
180 181 7.439655 GGATTATTACGCCCTTCATCTATCATC 59.560 40.741 0.00 0.00 0.00 2.92
181 182 7.482169 TTATTACGCCCTTCATCTATCATCT 57.518 36.000 0.00 0.00 0.00 2.90
195 196 8.688151 TCATCTATCATCTATTCATCTCAGCAG 58.312 37.037 0.00 0.00 0.00 4.24
196 197 6.865411 TCTATCATCTATTCATCTCAGCAGC 58.135 40.000 0.00 0.00 0.00 5.25
265 275 3.127548 GCATCACCAGATCACACGAAAAT 59.872 43.478 0.00 0.00 30.20 1.82
276 286 3.427528 TCACACGAAAATAAGCAGACGAC 59.572 43.478 0.00 0.00 0.00 4.34
352 393 4.004314 AGATCGATCCCACTACTCATACG 58.996 47.826 21.66 0.00 0.00 3.06
353 394 2.501261 TCGATCCCACTACTCATACGG 58.499 52.381 0.00 0.00 0.00 4.02
354 395 2.158711 TCGATCCCACTACTCATACGGT 60.159 50.000 0.00 0.00 0.00 4.83
355 396 2.031069 CGATCCCACTACTCATACGGTG 60.031 54.545 0.00 0.00 0.00 4.94
356 397 1.771565 TCCCACTACTCATACGGTGG 58.228 55.000 0.00 0.00 46.07 4.61
357 398 0.104304 CCCACTACTCATACGGTGGC 59.896 60.000 5.55 0.00 45.40 5.01
358 399 0.821517 CCACTACTCATACGGTGGCA 59.178 55.000 0.00 0.00 41.87 4.92
359 400 1.412710 CCACTACTCATACGGTGGCAT 59.587 52.381 0.00 0.00 41.87 4.40
360 401 2.473816 CACTACTCATACGGTGGCATG 58.526 52.381 0.00 0.00 0.00 4.06
361 402 1.202533 ACTACTCATACGGTGGCATGC 60.203 52.381 9.90 9.90 0.00 4.06
374 415 3.578688 GTGGCATGCAAGAACCTAAAAG 58.421 45.455 21.36 0.00 0.00 2.27
393 434 2.125512 AGCGACCGCAGATCAACC 60.126 61.111 16.97 0.00 44.88 3.77
601 647 4.367039 TCTTCCAAATCGTCCCTTTTCT 57.633 40.909 0.00 0.00 0.00 2.52
609 655 3.955650 TCGTCCCTTTTCTTGTCCTAG 57.044 47.619 0.00 0.00 0.00 3.02
610 656 2.565834 TCGTCCCTTTTCTTGTCCTAGG 59.434 50.000 0.82 0.82 0.00 3.02
611 657 2.712709 GTCCCTTTTCTTGTCCTAGGC 58.287 52.381 2.96 0.00 0.00 3.93
612 658 2.306219 GTCCCTTTTCTTGTCCTAGGCT 59.694 50.000 2.96 0.00 0.00 4.58
613 659 2.572104 TCCCTTTTCTTGTCCTAGGCTC 59.428 50.000 2.96 0.00 0.00 4.70
614 660 2.356227 CCCTTTTCTTGTCCTAGGCTCC 60.356 54.545 2.96 0.00 0.00 4.70
615 661 2.573915 CCTTTTCTTGTCCTAGGCTCCT 59.426 50.000 2.96 0.00 0.00 3.69
616 662 3.775316 CCTTTTCTTGTCCTAGGCTCCTA 59.225 47.826 2.96 0.00 0.00 2.94
668 718 1.842052 TTTAATGGAGGTTTCGGGCC 58.158 50.000 0.00 0.00 0.00 5.80
669 719 0.033894 TTAATGGAGGTTTCGGGCCC 60.034 55.000 13.57 13.57 0.00 5.80
743 793 0.662619 TTGCTCACTTGTTCTTGCGG 59.337 50.000 0.00 0.00 0.00 5.69
745 795 0.884704 GCTCACTTGTTCTTGCGGGA 60.885 55.000 0.00 0.00 0.00 5.14
805 855 0.318441 TGCTCTGCGCTACAAAGTCT 59.682 50.000 9.73 0.00 40.11 3.24
807 857 2.029380 TGCTCTGCGCTACAAAGTCTAA 60.029 45.455 9.73 0.00 40.11 2.10
808 858 2.600867 GCTCTGCGCTACAAAGTCTAAG 59.399 50.000 9.73 0.00 35.14 2.18
811 861 1.007580 GCGCTACAAAGTCTAAGCCC 58.992 55.000 0.00 0.00 0.00 5.19
1171 1256 1.602323 TTTCTTTCATGGCGGCGGT 60.602 52.632 9.78 0.00 0.00 5.68
1173 1258 1.582610 TTCTTTCATGGCGGCGGTTC 61.583 55.000 9.78 0.00 0.00 3.62
1666 1766 2.018086 CCTCCTCCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
1831 1931 4.904466 GCCAATTGCTTGCTCTGG 57.096 55.556 0.00 0.00 36.87 3.86
1843 1943 3.670627 GCTTGCTCTGGTTTCGTTTATGG 60.671 47.826 0.00 0.00 0.00 2.74
1865 1965 3.066291 TGCTCAATACCGATTTGTGGT 57.934 42.857 0.00 0.00 43.62 4.16
1866 1966 3.006940 TGCTCAATACCGATTTGTGGTC 58.993 45.455 0.00 0.00 40.96 4.02
1903 2079 7.554118 TGGATTCAGACTGAATATCTTTTCCAC 59.446 37.037 26.80 12.51 46.20 4.02
1943 2119 6.311200 ACTTGCTGTTTTCTGTTTTGATGTTC 59.689 34.615 0.00 0.00 0.00 3.18
1967 2143 8.206325 TCATCTTCTTCTTCTGAATATTGTGC 57.794 34.615 0.00 0.00 0.00 4.57
2000 2179 4.562394 GTGAGTTGTGACATGTTGGTTTTG 59.438 41.667 0.00 0.00 0.00 2.44
2097 2276 4.460873 GCTTCCTTTTCGCGCCCG 62.461 66.667 0.00 0.00 0.00 6.13
2320 2499 2.678336 GACTCCGCCACTTTAAATGGAG 59.322 50.000 16.30 15.18 46.58 3.86
2339 2518 4.202253 TGGAGGATGATGATAAGTTGACCG 60.202 45.833 0.00 0.00 0.00 4.79
2747 2940 7.833285 TGTGGTACAGTTCTGCTATATATGA 57.167 36.000 0.00 0.00 41.80 2.15
2748 2941 8.245195 TGTGGTACAGTTCTGCTATATATGAA 57.755 34.615 0.00 0.00 41.80 2.57
2749 2942 8.700973 TGTGGTACAGTTCTGCTATATATGAAA 58.299 33.333 0.00 0.00 41.80 2.69
2750 2943 9.542462 GTGGTACAGTTCTGCTATATATGAAAA 57.458 33.333 0.00 0.00 41.80 2.29
2751 2944 9.542462 TGGTACAGTTCTGCTATATATGAAAAC 57.458 33.333 0.00 0.00 0.00 2.43
2752 2945 9.542462 GGTACAGTTCTGCTATATATGAAAACA 57.458 33.333 0.00 0.00 0.00 2.83
2771 2964 9.515226 TGAAAACAAAATACTTATGCTAGGACT 57.485 29.630 0.00 0.00 0.00 3.85
2774 2967 9.515226 AAACAAAATACTTATGCTAGGACTTGA 57.485 29.630 0.00 0.00 0.00 3.02
2775 2968 9.515226 AACAAAATACTTATGCTAGGACTTGAA 57.485 29.630 0.00 0.00 0.00 2.69
2776 2969 8.947115 ACAAAATACTTATGCTAGGACTTGAAC 58.053 33.333 0.00 0.00 0.00 3.18
2777 2970 9.167311 CAAAATACTTATGCTAGGACTTGAACT 57.833 33.333 0.00 0.00 0.00 3.01
2778 2971 9.740710 AAAATACTTATGCTAGGACTTGAACTT 57.259 29.630 0.00 0.00 0.00 2.66
2779 2972 9.740710 AAATACTTATGCTAGGACTTGAACTTT 57.259 29.630 0.00 0.00 0.00 2.66
2783 2976 9.569122 ACTTATGCTAGGACTTGAACTTTAAAA 57.431 29.630 0.00 0.00 0.00 1.52
2912 3107 3.496884 TGATTACGCGAATTTAGATGGGC 59.503 43.478 15.93 0.00 0.00 5.36
2936 3131 5.529060 CCAGCTTGAGTTTAACTTTCTCAGT 59.471 40.000 0.00 0.00 39.00 3.41
3084 3283 5.969423 TGCGGTGTTTATTAAGCTAGTAGT 58.031 37.500 0.00 0.00 0.00 2.73
3166 3365 1.549950 GGGGGAAGAGCCAATGAAACA 60.550 52.381 0.00 0.00 38.95 2.83
3311 3582 8.463930 TTTAAGCCCCAATTCTCTATGTTATG 57.536 34.615 0.00 0.00 0.00 1.90
3312 3583 5.653255 AGCCCCAATTCTCTATGTTATGT 57.347 39.130 0.00 0.00 0.00 2.29
3313 3584 6.018433 AGCCCCAATTCTCTATGTTATGTT 57.982 37.500 0.00 0.00 0.00 2.71
3374 3646 8.928733 CATTTTGTAGGATGTTTCAATTTGGAG 58.071 33.333 0.00 0.00 0.00 3.86
3406 3678 8.997323 CAAAAGCCACATGATAAATAAAAACCA 58.003 29.630 0.00 0.00 0.00 3.67
3409 3681 8.588290 AGCCACATGATAAATAAAAACCACTA 57.412 30.769 0.00 0.00 0.00 2.74
3418 3821 2.556144 AAAAACCACTACTCCGTCCC 57.444 50.000 0.00 0.00 0.00 4.46
3419 3822 0.319405 AAAACCACTACTCCGTCCCG 59.681 55.000 0.00 0.00 0.00 5.14
3420 3823 0.829182 AAACCACTACTCCGTCCCGT 60.829 55.000 0.00 0.00 0.00 5.28
3424 3827 1.066605 CCACTACTCCGTCCCGTAATG 59.933 57.143 0.00 0.00 0.00 1.90
3430 3833 2.424956 ACTCCGTCCCGTAATGTAAGAC 59.575 50.000 0.00 0.00 0.00 3.01
3436 3839 4.150451 CGTCCCGTAATGTAAGACGTTTTT 59.850 41.667 0.00 0.00 43.89 1.94
3459 3862 9.621629 TTTTTGACACGTCTTATATTATGGGAT 57.378 29.630 0.00 0.00 0.00 3.85
3460 3863 8.601845 TTTGACACGTCTTATATTATGGGATG 57.398 34.615 0.00 0.00 0.00 3.51
3462 3865 6.495526 TGACACGTCTTATATTATGGGATGGA 59.504 38.462 0.00 0.00 0.00 3.41
3463 3866 6.936279 ACACGTCTTATATTATGGGATGGAG 58.064 40.000 0.00 0.00 0.00 3.86
3464 3867 6.070767 ACACGTCTTATATTATGGGATGGAGG 60.071 42.308 0.00 0.00 0.00 4.30
3465 3868 5.425539 ACGTCTTATATTATGGGATGGAGGG 59.574 44.000 0.00 0.00 0.00 4.30
3466 3869 5.661312 CGTCTTATATTATGGGATGGAGGGA 59.339 44.000 0.00 0.00 0.00 4.20
3467 3870 6.327626 CGTCTTATATTATGGGATGGAGGGAT 59.672 42.308 0.00 0.00 0.00 3.85
3495 3898 8.368668 AGTTCTTAGGAATTAATATGCGCTACT 58.631 33.333 9.73 0.00 33.71 2.57
3620 4806 4.521536 AGTGTACCCAGCTCTGATACTA 57.478 45.455 0.00 0.00 0.00 1.82
3752 4938 4.095036 GCCCTCATTAGTAAACACTGAAGC 59.905 45.833 0.00 0.00 0.00 3.86
3969 5157 5.163550 TGTGCATACATCCTCTACAGTACAC 60.164 44.000 0.00 0.00 0.00 2.90
4155 5343 1.732259 CCGTAAACAGTCACAGGATGC 59.268 52.381 0.00 0.00 42.53 3.91
4156 5344 1.390123 CGTAAACAGTCACAGGATGCG 59.610 52.381 0.00 0.00 42.53 4.73
4158 5346 2.254546 AAACAGTCACAGGATGCGAA 57.745 45.000 0.00 0.00 42.53 4.70
4241 5441 1.953686 TGTGCTTTTCTTGGTACAGGC 59.046 47.619 0.00 0.00 42.39 4.85
4433 5633 4.363991 ACCCATCATGCTCTCCTTATTC 57.636 45.455 0.00 0.00 0.00 1.75
4508 5708 3.057019 TGATGTCGAAAACAAGGTCTCG 58.943 45.455 0.00 0.00 42.37 4.04
4562 5762 1.445582 GATTGTTCGCGTCCGAGGT 60.446 57.895 5.77 0.00 45.35 3.85
4592 5792 7.087639 GTCTGATACATACAGAGCTTATGTCC 58.912 42.308 11.85 7.33 43.58 4.02
4681 5882 9.787532 TCAACTTCTACATTTTTGTTTTCAGAG 57.212 29.630 0.00 0.00 0.00 3.35
4683 5884 9.573133 AACTTCTACATTTTTGTTTTCAGAGTG 57.427 29.630 0.00 0.00 0.00 3.51
4733 5977 6.701145 TCTCCAGTACACTCTGCTAAATAG 57.299 41.667 0.00 0.00 34.47 1.73
4970 6214 5.413309 ACATAGAGTTTGAGAAGGACCTG 57.587 43.478 0.00 0.00 0.00 4.00
5084 6328 1.839994 TCCTCCATCAGTAAAGGCCTG 59.160 52.381 5.69 0.00 0.00 4.85
5129 6379 0.469331 AGGTCAACGGGTCAGACTCA 60.469 55.000 0.15 0.00 32.98 3.41
5426 6676 1.568504 TACCTCATGCTTCGACCCTT 58.431 50.000 0.00 0.00 0.00 3.95
5494 6744 3.436704 CCACGCTCTGTTGTTCATATGTT 59.563 43.478 1.90 0.00 0.00 2.71
5505 6755 5.826601 TGTTCATATGTTGTGTGTGTGTT 57.173 34.783 1.90 0.00 0.00 3.32
5506 6756 5.576895 TGTTCATATGTTGTGTGTGTGTTG 58.423 37.500 1.90 0.00 0.00 3.33
5621 6877 7.442364 TGCATAGTTTTATCTATGGTCTCTTGC 59.558 37.037 13.25 0.00 44.14 4.01
5706 7061 9.507329 TTGAGATGTAGGGAATATAGCATTTTC 57.493 33.333 0.00 0.00 0.00 2.29
5707 7062 8.884323 TGAGATGTAGGGAATATAGCATTTTCT 58.116 33.333 0.00 0.00 0.00 2.52
5754 7109 9.969001 TTAGGCTGTTTTAGAACCTTAATACAT 57.031 29.630 0.00 0.00 34.80 2.29
5884 7248 4.202141 CCTGGTTGTTTCTTCTTGCAATGA 60.202 41.667 0.00 0.00 0.00 2.57
5901 7265 3.683365 ATGATTTTTGTTGGAGGCACC 57.317 42.857 0.00 0.00 39.54 5.01
5925 7312 0.241481 AGACGCGAGAGGAAAGACAC 59.759 55.000 15.93 0.00 0.00 3.67
5928 7315 0.734253 CGCGAGAGGAAAGACACTGG 60.734 60.000 0.00 0.00 0.00 4.00
5948 7341 7.065894 CACTGGTAGTTACATACGATACGTAC 58.934 42.308 0.00 0.00 45.07 3.67
5951 7352 9.144747 CTGGTAGTTACATACGATACGTACTAT 57.855 37.037 0.00 0.00 45.07 2.12
5960 7361 7.854422 ACATACGATACGTACTATTTCACACAG 59.146 37.037 0.00 0.00 45.07 3.66
6005 7408 2.704424 GCCATCCCATCCACCCCTT 61.704 63.158 0.00 0.00 0.00 3.95
6065 7468 4.473199 GGGTTGCTTTTCGATTCTTACAC 58.527 43.478 0.00 0.00 0.00 2.90
6106 7509 7.905493 GCTTCGTCTGCTAATTTATATATTGGC 59.095 37.037 14.52 14.52 40.97 4.52
6113 7516 7.573710 TGCTAATTTATATATTGGCCCGATCT 58.426 34.615 17.34 0.00 40.17 2.75
6138 7541 9.515226 CTATTAATATAGGTTGGCCAGCTTTAA 57.485 33.333 19.84 14.43 37.19 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.370231 GCGCGGATTGTTTGGGGT 61.370 61.111 8.83 0.00 0.00 4.95
27 28 3.369400 TGCGCGGATTGTTTGGGG 61.369 61.111 8.83 0.00 0.00 4.96
34 35 2.160221 GGCATTTGTGCGCGGATTG 61.160 57.895 8.83 3.27 35.24 2.67
142 143 9.357161 AGGGCGTAATAATCCATTAATAAAACA 57.643 29.630 0.00 0.00 30.84 2.83
147 148 9.391006 GATGAAGGGCGTAATAATCCATTAATA 57.609 33.333 0.00 0.00 30.84 0.98
148 149 8.109634 AGATGAAGGGCGTAATAATCCATTAAT 58.890 33.333 0.00 0.00 30.84 1.40
168 169 9.032624 TGCTGAGATGAATAGATGATAGATGAA 57.967 33.333 0.00 0.00 0.00 2.57
177 178 3.921630 CGAGCTGCTGAGATGAATAGATG 59.078 47.826 7.01 0.00 0.00 2.90
178 179 3.825585 TCGAGCTGCTGAGATGAATAGAT 59.174 43.478 7.01 0.00 0.00 1.98
179 180 3.004210 GTCGAGCTGCTGAGATGAATAGA 59.996 47.826 7.01 0.00 0.00 1.98
180 181 3.307674 GTCGAGCTGCTGAGATGAATAG 58.692 50.000 7.01 0.00 0.00 1.73
181 182 2.035193 GGTCGAGCTGCTGAGATGAATA 59.965 50.000 7.01 0.00 0.00 1.75
195 196 1.079503 GAAAGTCATGGTGGTCGAGC 58.920 55.000 7.89 7.89 0.00 5.03
196 197 2.455674 TGAAAGTCATGGTGGTCGAG 57.544 50.000 0.00 0.00 0.00 4.04
224 225 2.066262 GCGAGGAAAACGTCATTCTCA 58.934 47.619 12.19 0.00 0.00 3.27
265 275 0.388134 GCCACTTCGTCGTCTGCTTA 60.388 55.000 0.00 0.00 0.00 3.09
276 286 0.804989 GGAATTCACCTGCCACTTCG 59.195 55.000 7.93 0.00 0.00 3.79
352 393 1.544724 TTAGGTTCTTGCATGCCACC 58.455 50.000 16.68 15.39 0.00 4.61
353 394 3.578688 CTTTTAGGTTCTTGCATGCCAC 58.421 45.455 16.68 6.55 0.00 5.01
354 395 2.562298 CCTTTTAGGTTCTTGCATGCCA 59.438 45.455 16.68 2.49 0.00 4.92
355 396 2.825532 TCCTTTTAGGTTCTTGCATGCC 59.174 45.455 16.68 0.00 36.53 4.40
356 397 3.674410 GCTCCTTTTAGGTTCTTGCATGC 60.674 47.826 11.82 11.82 36.53 4.06
357 398 3.426695 CGCTCCTTTTAGGTTCTTGCATG 60.427 47.826 0.00 0.00 36.53 4.06
358 399 2.749621 CGCTCCTTTTAGGTTCTTGCAT 59.250 45.455 0.00 0.00 36.53 3.96
359 400 2.151202 CGCTCCTTTTAGGTTCTTGCA 58.849 47.619 0.00 0.00 36.53 4.08
360 401 2.159824 GTCGCTCCTTTTAGGTTCTTGC 59.840 50.000 0.00 0.00 36.53 4.01
361 402 2.742589 GGTCGCTCCTTTTAGGTTCTTG 59.257 50.000 0.00 0.00 36.53 3.02
374 415 2.167861 GTTGATCTGCGGTCGCTCC 61.168 63.158 16.36 3.93 42.51 4.70
601 647 0.755698 CCGCTAGGAGCCTAGGACAA 60.756 60.000 21.70 0.00 44.48 3.18
609 655 2.029815 GCTAAGCCGCTAGGAGCC 59.970 66.667 9.65 0.00 38.18 4.70
610 656 2.355244 CGCTAAGCCGCTAGGAGC 60.355 66.667 10.45 10.45 41.02 4.70
611 657 1.299468 CACGCTAAGCCGCTAGGAG 60.299 63.158 0.00 0.00 41.02 3.69
612 658 2.805546 CACGCTAAGCCGCTAGGA 59.194 61.111 0.00 0.00 41.02 2.94
613 659 2.962253 GCACGCTAAGCCGCTAGG 60.962 66.667 0.00 0.00 41.62 3.02
614 660 3.323136 CGCACGCTAAGCCGCTAG 61.323 66.667 0.00 0.00 0.00 3.42
668 718 1.004200 ACCACGCGGTAGAAAAGGG 60.004 57.895 12.47 0.00 46.71 3.95
669 719 0.320073 TCACCACGCGGTAGAAAAGG 60.320 55.000 12.47 1.27 46.94 3.11
743 793 3.100671 TCCCTTCTTGTAGCTTCTCTCC 58.899 50.000 0.00 0.00 0.00 3.71
745 795 2.499693 GCTCCCTTCTTGTAGCTTCTCT 59.500 50.000 0.00 0.00 32.18 3.10
805 855 0.998928 TGGCAGGATTTCTGGGCTTA 59.001 50.000 0.00 0.00 43.54 3.09
807 857 0.114954 TTTGGCAGGATTTCTGGGCT 59.885 50.000 0.00 0.00 43.54 5.19
808 858 0.975887 TTTTGGCAGGATTTCTGGGC 59.024 50.000 0.00 0.00 43.54 5.36
811 861 4.589216 TTCTGTTTTGGCAGGATTTCTG 57.411 40.909 0.00 0.00 46.03 3.02
981 1047 0.178891 TTCCTCTGCCTCTCCCAGTT 60.179 55.000 0.00 0.00 0.00 3.16
984 1050 0.984961 CCATTCCTCTGCCTCTCCCA 60.985 60.000 0.00 0.00 0.00 4.37
1129 1213 1.716826 GAAACCGCCGTCAAACACCA 61.717 55.000 0.00 0.00 0.00 4.17
1132 1216 0.378962 CAAGAAACCGCCGTCAAACA 59.621 50.000 0.00 0.00 0.00 2.83
1133 1217 0.317519 CCAAGAAACCGCCGTCAAAC 60.318 55.000 0.00 0.00 0.00 2.93
1134 1218 0.748729 ACCAAGAAACCGCCGTCAAA 60.749 50.000 0.00 0.00 0.00 2.69
1135 1219 0.748729 AACCAAGAAACCGCCGTCAA 60.749 50.000 0.00 0.00 0.00 3.18
1553 1653 4.463879 CAGCCTCTGCAGGACCCG 62.464 72.222 15.13 0.00 43.65 5.28
1666 1766 4.399618 CGTAACTGAATCTCTGAGGAAGGA 59.600 45.833 4.59 0.00 0.00 3.36
1796 1896 0.025513 GCTTACATTCGTGCTGCTCG 59.974 55.000 17.08 17.08 0.00 5.03
1831 1931 5.798434 GGTATTGAGCAACCATAAACGAAAC 59.202 40.000 0.00 0.00 35.73 2.78
1843 1943 3.190535 ACCACAAATCGGTATTGAGCAAC 59.809 43.478 3.36 0.00 34.02 4.17
1865 1965 5.122239 CAGTCTGAATCCAAAAACATAGCGA 59.878 40.000 0.00 0.00 0.00 4.93
1866 1966 5.122239 TCAGTCTGAATCCAAAAACATAGCG 59.878 40.000 0.00 0.00 0.00 4.26
1943 2119 8.123575 CAGCACAATATTCAGAAGAAGAAGATG 58.876 37.037 0.00 0.00 37.14 2.90
1967 2143 2.614057 GTCACAACTCACAAACCCTCAG 59.386 50.000 0.00 0.00 0.00 3.35
2000 2179 5.162075 GTCACCGGTAGCAATATATCTGAC 58.838 45.833 6.87 1.45 0.00 3.51
2320 2499 3.466836 TGCGGTCAACTTATCATCATCC 58.533 45.455 0.00 0.00 0.00 3.51
2339 2518 9.509855 CCTAATAGTTCGAACAGATATAGATGC 57.490 37.037 28.78 0.00 0.00 3.91
2723 2916 7.833285 TCATATATAGCAGAACTGTACCACA 57.167 36.000 3.77 0.00 0.00 4.17
2724 2917 9.542462 TTTTCATATATAGCAGAACTGTACCAC 57.458 33.333 3.77 0.00 0.00 4.16
2725 2918 9.542462 GTTTTCATATATAGCAGAACTGTACCA 57.458 33.333 3.77 0.00 0.00 3.25
2726 2919 9.542462 TGTTTTCATATATAGCAGAACTGTACC 57.458 33.333 3.77 0.00 0.00 3.34
2745 2938 9.515226 AGTCCTAGCATAAGTATTTTGTTTTCA 57.485 29.630 0.00 0.00 29.32 2.69
2748 2941 9.515226 TCAAGTCCTAGCATAAGTATTTTGTTT 57.485 29.630 0.00 0.00 29.32 2.83
2749 2942 9.515226 TTCAAGTCCTAGCATAAGTATTTTGTT 57.485 29.630 0.00 0.00 29.32 2.83
2750 2943 8.947115 GTTCAAGTCCTAGCATAAGTATTTTGT 58.053 33.333 0.00 0.00 29.32 2.83
2751 2944 9.167311 AGTTCAAGTCCTAGCATAAGTATTTTG 57.833 33.333 0.00 0.00 0.00 2.44
2752 2945 9.740710 AAGTTCAAGTCCTAGCATAAGTATTTT 57.259 29.630 0.00 0.00 0.00 1.82
2753 2946 9.740710 AAAGTTCAAGTCCTAGCATAAGTATTT 57.259 29.630 0.00 0.00 0.00 1.40
2757 2950 9.569122 TTTTAAAGTTCAAGTCCTAGCATAAGT 57.431 29.630 0.00 0.00 0.00 2.24
2781 2974 9.617523 CCAATTCCCTTATTTATCTGCATTTTT 57.382 29.630 0.00 0.00 0.00 1.94
2782 2975 8.991275 TCCAATTCCCTTATTTATCTGCATTTT 58.009 29.630 0.00 0.00 0.00 1.82
2783 2976 8.551682 TCCAATTCCCTTATTTATCTGCATTT 57.448 30.769 0.00 0.00 0.00 2.32
2784 2977 8.731591 ATCCAATTCCCTTATTTATCTGCATT 57.268 30.769 0.00 0.00 0.00 3.56
2785 2978 9.827198 TTATCCAATTCCCTTATTTATCTGCAT 57.173 29.630 0.00 0.00 0.00 3.96
2786 2979 9.077885 GTTATCCAATTCCCTTATTTATCTGCA 57.922 33.333 0.00 0.00 0.00 4.41
2787 2980 9.077885 TGTTATCCAATTCCCTTATTTATCTGC 57.922 33.333 0.00 0.00 0.00 4.26
2912 3107 5.529060 ACTGAGAAAGTTAAACTCAAGCTGG 59.471 40.000 0.00 0.00 39.60 4.85
2936 3131 8.882736 CAACTAAATCAGCACATGTTACATAGA 58.117 33.333 0.00 0.00 0.00 1.98
3030 3225 9.784531 AGCTATATTGCTTGTACAATGATTAGT 57.215 29.630 9.13 0.00 40.93 2.24
3084 3283 1.067565 CAACTTCTCTCAGCACGGCTA 60.068 52.381 0.00 0.00 36.40 3.93
3225 3424 8.343974 TCGTAAGTGTAGTTAAAAGTGAACAG 57.656 34.615 0.00 0.00 39.48 3.16
3436 3839 7.015779 TCCATCCCATAATATAAGACGTGTCAA 59.984 37.037 0.00 0.00 0.00 3.18
3437 3840 6.495526 TCCATCCCATAATATAAGACGTGTCA 59.504 38.462 0.00 0.00 0.00 3.58
3438 3841 6.931838 TCCATCCCATAATATAAGACGTGTC 58.068 40.000 0.00 0.00 0.00 3.67
3439 3842 6.070767 CCTCCATCCCATAATATAAGACGTGT 60.071 42.308 0.00 0.00 0.00 4.49
3440 3843 6.341316 CCTCCATCCCATAATATAAGACGTG 58.659 44.000 0.00 0.00 0.00 4.49
3441 3844 5.425539 CCCTCCATCCCATAATATAAGACGT 59.574 44.000 0.00 0.00 0.00 4.34
3442 3845 5.661312 TCCCTCCATCCCATAATATAAGACG 59.339 44.000 0.00 0.00 0.00 4.18
3443 3846 7.698163 ATCCCTCCATCCCATAATATAAGAC 57.302 40.000 0.00 0.00 0.00 3.01
3444 3847 9.452517 CTAATCCCTCCATCCCATAATATAAGA 57.547 37.037 0.00 0.00 0.00 2.10
3445 3848 9.230477 ACTAATCCCTCCATCCCATAATATAAG 57.770 37.037 0.00 0.00 0.00 1.73
3446 3849 9.588432 AACTAATCCCTCCATCCCATAATATAA 57.412 33.333 0.00 0.00 0.00 0.98
3450 3853 6.101223 AGAACTAATCCCTCCATCCCATAAT 58.899 40.000 0.00 0.00 0.00 1.28
3451 3854 5.486332 AGAACTAATCCCTCCATCCCATAA 58.514 41.667 0.00 0.00 0.00 1.90
3452 3855 5.106631 AGAACTAATCCCTCCATCCCATA 57.893 43.478 0.00 0.00 0.00 2.74
3453 3856 3.959920 AGAACTAATCCCTCCATCCCAT 58.040 45.455 0.00 0.00 0.00 4.00
3455 3858 4.287326 CCTAAGAACTAATCCCTCCATCCC 59.713 50.000 0.00 0.00 0.00 3.85
3456 3859 5.155905 TCCTAAGAACTAATCCCTCCATCC 58.844 45.833 0.00 0.00 0.00 3.51
3457 3860 6.749036 TTCCTAAGAACTAATCCCTCCATC 57.251 41.667 0.00 0.00 0.00 3.51
3458 3861 7.713704 AATTCCTAAGAACTAATCCCTCCAT 57.286 36.000 0.00 0.00 33.97 3.41
3459 3862 8.632731 TTAATTCCTAAGAACTAATCCCTCCA 57.367 34.615 0.00 0.00 33.97 3.86
3465 3868 9.974750 GCGCATATTAATTCCTAAGAACTAATC 57.025 33.333 0.30 0.00 36.23 1.75
3466 3869 9.726438 AGCGCATATTAATTCCTAAGAACTAAT 57.274 29.630 11.47 0.00 37.90 1.73
3495 3898 2.940514 TCACCAGAGGAAGGATGGTA 57.059 50.000 0.00 0.00 45.52 3.25
3535 4559 1.134965 GGGATTCTGGACTCGACACAG 60.135 57.143 0.97 0.97 0.00 3.66
3620 4806 2.107031 TGCAGCTTGTCCCATATATGCT 59.893 45.455 7.24 0.00 33.68 3.79
3729 4915 4.095036 GCTTCAGTGTTTACTAATGAGGGC 59.905 45.833 0.00 0.00 34.74 5.19
3752 4938 9.538508 GGGGTACTTGTTATACAGTTATACTTG 57.461 37.037 0.00 0.00 0.00 3.16
3969 5157 6.599638 TGATCTCTGGTATGTATATCTGACCG 59.400 42.308 0.00 0.00 32.55 4.79
4200 5389 5.294552 CACATAAGCTAGGCACCTAAAGTTC 59.705 44.000 0.00 0.00 0.00 3.01
4241 5441 3.187227 GCATTACAGTTATGATCGCCAGG 59.813 47.826 3.64 0.00 0.00 4.45
4313 5513 3.990469 ACACGAGAGAAAACACTATGCTG 59.010 43.478 0.00 0.00 0.00 4.41
4433 5633 5.202640 CACACGCACATCATTATCATGAAG 58.797 41.667 0.00 0.00 42.93 3.02
4508 5708 4.509600 CCGAGATTCAAGAGCCAACTTATC 59.490 45.833 0.00 0.00 0.00 1.75
4562 5762 7.603180 AAGCTCTGTATGTATCAGACCAATA 57.397 36.000 0.00 0.00 37.07 1.90
4592 5792 1.678101 GAGAAAATGGCTGGAATCCCG 59.322 52.381 0.00 0.00 34.29 5.14
4681 5882 5.886960 AAAGAATAGAGATTGGTGTGCAC 57.113 39.130 10.75 10.75 0.00 4.57
4683 5884 6.261826 AGCATAAAGAATAGAGATTGGTGTGC 59.738 38.462 0.00 0.00 0.00 4.57
4733 5977 6.183360 GCACGTACCAGTGAACTAAGATTAAC 60.183 42.308 5.22 0.00 44.43 2.01
4748 5992 3.119459 AGTTCACTAGATGCACGTACCAG 60.119 47.826 0.00 0.00 28.53 4.00
4751 5995 4.734917 AGAAGTTCACTAGATGCACGTAC 58.265 43.478 5.50 0.00 28.53 3.67
5084 6328 1.134401 TCATCGTCCTCCTGAAATGGC 60.134 52.381 0.00 0.00 0.00 4.40
5129 6379 1.040893 TGCCCGTGGACAGTATCGAT 61.041 55.000 2.16 2.16 0.00 3.59
5324 6574 0.807667 CGATCTTCTTCACCAGGCCG 60.808 60.000 0.00 0.00 0.00 6.13
5426 6676 1.271840 GGCACACCATCCCTACCTCA 61.272 60.000 0.00 0.00 35.26 3.86
5621 6877 5.942872 ACCAAAATAAAGATCAGCTCAACG 58.057 37.500 0.00 0.00 0.00 4.10
5628 6884 5.902613 TGGCAGACCAAAATAAAGATCAG 57.097 39.130 0.00 0.00 45.37 2.90
5671 6941 3.118775 TCCCTACATCTCAACGACCAATG 60.119 47.826 0.00 0.00 0.00 2.82
5706 7061 2.099592 ACACCAAACTCATGCACACAAG 59.900 45.455 0.00 0.00 0.00 3.16
5707 7062 2.098614 ACACCAAACTCATGCACACAA 58.901 42.857 0.00 0.00 0.00 3.33
5752 7107 2.035674 CGCGCGACAACTTCTAGTAATG 60.036 50.000 28.94 0.00 0.00 1.90
5754 7109 1.609932 CGCGCGACAACTTCTAGTAA 58.390 50.000 28.94 0.00 0.00 2.24
5824 7188 1.303091 CCGGAACCCAACGACCAATC 61.303 60.000 0.00 0.00 0.00 2.67
5862 7226 4.935702 TCATTGCAAGAAGAAACAACCAG 58.064 39.130 4.94 0.00 0.00 4.00
5866 7230 8.266392 ACAAAAATCATTGCAAGAAGAAACAA 57.734 26.923 4.94 0.00 33.52 2.83
5884 7248 1.408969 ACGGTGCCTCCAACAAAAAT 58.591 45.000 0.00 0.00 35.57 1.82
5925 7312 7.413475 AGTACGTATCGTATGTAACTACCAG 57.587 40.000 0.00 0.00 44.12 4.00
5948 7341 2.915463 GGTCGACGTCTGTGTGAAATAG 59.085 50.000 14.70 0.00 0.00 1.73
5951 7352 0.456628 TGGTCGACGTCTGTGTGAAA 59.543 50.000 14.70 0.00 0.00 2.69
5960 7361 3.246699 TCAATTTCTTTGTGGTCGACGTC 59.753 43.478 9.92 5.18 36.65 4.34
6005 7408 3.646715 CGCAGGGTTGGGGAAGGA 61.647 66.667 0.00 0.00 33.88 3.36
6106 7509 6.126883 TGGCCAACCTATATTAATAGATCGGG 60.127 42.308 0.61 0.00 37.84 5.14
6353 7781 6.310467 AGTGTGAACATATCATGTGAACGTAC 59.690 38.462 0.00 0.00 44.07 3.67
6354 7782 6.394809 AGTGTGAACATATCATGTGAACGTA 58.605 36.000 0.00 0.00 44.07 3.57
6355 7783 5.237815 AGTGTGAACATATCATGTGAACGT 58.762 37.500 0.00 0.00 44.07 3.99
6356 7784 5.784750 AGTGTGAACATATCATGTGAACG 57.215 39.130 0.00 0.00 44.07 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.