Multiple sequence alignment - TraesCS7D01G211400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G211400 chr7D 100.000 3143 0 0 1 3143 169541525 169538383 0.000000e+00 5805
1 TraesCS7D01G211400 chr7D 91.176 1054 64 12 617 1663 169422937 169421906 0.000000e+00 1404
2 TraesCS7D01G211400 chr7D 94.364 763 22 4 1539 2296 169449608 169448862 0.000000e+00 1151
3 TraesCS7D01G211400 chr7D 88.438 960 62 26 2221 3141 169428486 169427537 0.000000e+00 1112
4 TraesCS7D01G211400 chr7D 95.888 681 25 2 959 1638 169456882 169456204 0.000000e+00 1099
5 TraesCS7D01G211400 chr7D 86.786 946 70 36 2221 3143 169418476 169417563 0.000000e+00 1003
6 TraesCS7D01G211400 chr7D 86.590 261 18 9 2896 3143 169480886 169480630 3.990000e-69 272
7 TraesCS7D01G211400 chr7D 79.909 219 16 17 2347 2556 169481186 169480987 5.470000e-28 135
8 TraesCS7D01G211400 chr7A 92.689 1696 91 16 617 2298 171950291 171948615 0.000000e+00 2414
9 TraesCS7D01G211400 chr7A 92.571 1696 93 16 617 2298 171536673 171534997 0.000000e+00 2403
10 TraesCS7D01G211400 chr7A 89.839 1614 86 22 703 2298 171877118 171875565 0.000000e+00 2001
11 TraesCS7D01G211400 chr7A 92.836 1382 62 7 924 2298 171548356 171547005 0.000000e+00 1969
12 TraesCS7D01G211400 chr7A 92.558 1384 64 7 924 2298 171637472 171636119 0.000000e+00 1949
13 TraesCS7D01G211400 chr7A 93.215 958 26 10 2221 3143 171553191 171552238 0.000000e+00 1373
14 TraesCS7D01G211400 chr7A 89.775 1066 63 19 608 1663 172235424 172234395 0.000000e+00 1323
15 TraesCS7D01G211400 chr7A 84.699 915 67 42 2269 3143 171436333 171435452 0.000000e+00 846
16 TraesCS7D01G211400 chr7A 86.943 314 28 5 174 475 172239819 172239507 1.080000e-89 340
17 TraesCS7D01G211400 chr7A 93.370 181 7 2 1 177 172240052 172239873 2.400000e-66 263
18 TraesCS7D01G211400 chr7A 84.314 255 22 4 595 842 171439797 171439554 1.880000e-57 233
19 TraesCS7D01G211400 chr7A 86.316 190 15 5 687 869 171577225 171577040 2.470000e-46 196
20 TraesCS7D01G211400 chrUn 92.702 1384 62 7 924 2298 340734509 340735862 0.000000e+00 1960
21 TraesCS7D01G211400 chrUn 92.276 1204 59 5 948 2145 248282329 248283504 0.000000e+00 1677
22 TraesCS7D01G211400 chrUn 89.167 1357 73 20 703 2045 342997743 342996447 0.000000e+00 1624
23 TraesCS7D01G211400 chrUn 91.369 1205 74 13 608 1802 262505070 262506254 0.000000e+00 1622
24 TraesCS7D01G211400 chrUn 92.710 1070 44 13 1236 2298 374569422 374568380 0.000000e+00 1513
25 TraesCS7D01G211400 chrUn 93.215 958 26 10 2221 3143 82711134 82710181 0.000000e+00 1373
26 TraesCS7D01G211400 chrUn 92.117 926 37 13 1382 2298 233051648 233052546 0.000000e+00 1273
27 TraesCS7D01G211400 chrUn 87.197 578 50 13 2495 3053 293554856 293555428 1.230000e-178 636
28 TraesCS7D01G211400 chrUn 86.316 190 15 5 687 869 248282109 248282294 2.470000e-46 196
29 TraesCS7D01G211400 chr7B 91.815 1344 72 17 761 2101 135019515 135018207 0.000000e+00 1838
30 TraesCS7D01G211400 chr7B 89.123 1425 85 18 684 2101 134492068 134493429 0.000000e+00 1709
31 TraesCS7D01G211400 chr7B 86.807 758 54 25 2401 3143 134632007 134631281 0.000000e+00 804
32 TraesCS7D01G211400 chr7B 84.282 369 26 15 248 608 135041032 135040688 6.500000e-87 331
33 TraesCS7D01G211400 chr7B 97.101 138 4 0 1 138 135041335 135041198 1.880000e-57 233
34 TraesCS7D01G211400 chr7B 90.370 135 7 3 433 567 134638561 134638433 4.170000e-39 172
35 TraesCS7D01G211400 chr6A 90.304 887 47 8 762 1643 124422822 124423674 0.000000e+00 1125
36 TraesCS7D01G211400 chr6A 90.158 884 48 8 765 1643 124917046 124916197 0.000000e+00 1114
37 TraesCS7D01G211400 chr6A 87.500 960 74 26 2221 3143 124426056 124427006 0.000000e+00 1066
38 TraesCS7D01G211400 chr6A 85.923 959 74 33 2221 3143 124914615 124913682 0.000000e+00 966
39 TraesCS7D01G211400 chr6A 91.103 562 31 7 2595 3143 124313260 124313815 0.000000e+00 743
40 TraesCS7D01G211400 chr6D 88.822 662 40 17 2502 3143 103036713 103037360 0.000000e+00 782
41 TraesCS7D01G211400 chr6D 86.404 228 15 11 2229 2442 103036472 103036697 5.240000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G211400 chr7D 169538383 169541525 3142 True 5805.0 5805 100.0000 1 3143 1 chr7D.!!$R4 3142
1 TraesCS7D01G211400 chr7D 169417563 169422937 5374 True 1203.5 1404 88.9810 617 3143 2 chr7D.!!$R5 2526
2 TraesCS7D01G211400 chr7D 169448862 169449608 746 True 1151.0 1151 94.3640 1539 2296 1 chr7D.!!$R2 757
3 TraesCS7D01G211400 chr7D 169427537 169428486 949 True 1112.0 1112 88.4380 2221 3141 1 chr7D.!!$R1 920
4 TraesCS7D01G211400 chr7D 169456204 169456882 678 True 1099.0 1099 95.8880 959 1638 1 chr7D.!!$R3 679
5 TraesCS7D01G211400 chr7D 169480630 169481186 556 True 203.5 272 83.2495 2347 3143 2 chr7D.!!$R6 796
6 TraesCS7D01G211400 chr7A 171948615 171950291 1676 True 2414.0 2414 92.6890 617 2298 1 chr7A.!!$R5 1681
7 TraesCS7D01G211400 chr7A 171534997 171536673 1676 True 2403.0 2403 92.5710 617 2298 1 chr7A.!!$R1 1681
8 TraesCS7D01G211400 chr7A 171875565 171877118 1553 True 2001.0 2001 89.8390 703 2298 1 chr7A.!!$R4 1595
9 TraesCS7D01G211400 chr7A 171636119 171637472 1353 True 1949.0 1949 92.5580 924 2298 1 chr7A.!!$R3 1374
10 TraesCS7D01G211400 chr7A 171547005 171553191 6186 True 1671.0 1969 93.0255 924 3143 2 chr7A.!!$R8 2219
11 TraesCS7D01G211400 chr7A 172234395 172235424 1029 True 1323.0 1323 89.7750 608 1663 1 chr7A.!!$R6 1055
12 TraesCS7D01G211400 chr7A 171435452 171439797 4345 True 539.5 846 84.5065 595 3143 2 chr7A.!!$R7 2548
13 TraesCS7D01G211400 chr7A 172239507 172240052 545 True 301.5 340 90.1565 1 475 2 chr7A.!!$R9 474
14 TraesCS7D01G211400 chrUn 340734509 340735862 1353 False 1960.0 1960 92.7020 924 2298 1 chrUn.!!$F4 1374
15 TraesCS7D01G211400 chrUn 342996447 342997743 1296 True 1624.0 1624 89.1670 703 2045 1 chrUn.!!$R2 1342
16 TraesCS7D01G211400 chrUn 262505070 262506254 1184 False 1622.0 1622 91.3690 608 1802 1 chrUn.!!$F2 1194
17 TraesCS7D01G211400 chrUn 374568380 374569422 1042 True 1513.0 1513 92.7100 1236 2298 1 chrUn.!!$R3 1062
18 TraesCS7D01G211400 chrUn 82710181 82711134 953 True 1373.0 1373 93.2150 2221 3143 1 chrUn.!!$R1 922
19 TraesCS7D01G211400 chrUn 233051648 233052546 898 False 1273.0 1273 92.1170 1382 2298 1 chrUn.!!$F1 916
20 TraesCS7D01G211400 chrUn 248282109 248283504 1395 False 936.5 1677 89.2960 687 2145 2 chrUn.!!$F5 1458
21 TraesCS7D01G211400 chrUn 293554856 293555428 572 False 636.0 636 87.1970 2495 3053 1 chrUn.!!$F3 558
22 TraesCS7D01G211400 chr7B 135018207 135019515 1308 True 1838.0 1838 91.8150 761 2101 1 chr7B.!!$R3 1340
23 TraesCS7D01G211400 chr7B 134492068 134493429 1361 False 1709.0 1709 89.1230 684 2101 1 chr7B.!!$F1 1417
24 TraesCS7D01G211400 chr7B 134631281 134632007 726 True 804.0 804 86.8070 2401 3143 1 chr7B.!!$R1 742
25 TraesCS7D01G211400 chr7B 135040688 135041335 647 True 282.0 331 90.6915 1 608 2 chr7B.!!$R4 607
26 TraesCS7D01G211400 chr6A 124422822 124427006 4184 False 1095.5 1125 88.9020 762 3143 2 chr6A.!!$F2 2381
27 TraesCS7D01G211400 chr6A 124913682 124917046 3364 True 1040.0 1114 88.0405 765 3143 2 chr6A.!!$R1 2378
28 TraesCS7D01G211400 chr6A 124313260 124313815 555 False 743.0 743 91.1030 2595 3143 1 chr6A.!!$F1 548
29 TraesCS7D01G211400 chr6D 103036472 103037360 888 False 508.5 782 87.6130 2229 3143 2 chr6D.!!$F1 914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.036388 TGGAGATCAAGGCCGTCAAC 60.036 55.0 0.00 0.0 0.00 3.18 F
578 579 0.105246 TTGGACAGGGGCCAACAATT 60.105 50.0 4.39 0.0 40.32 2.32 F
1722 6438 0.039978 CTGAAGCTGACGACGACACT 60.040 55.0 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 6438 1.222113 TGTGCAACAGAACCGGACA 59.778 52.632 9.46 0.0 45.67 4.02 R
1814 6530 1.657804 CCCCTCTGGTTCCAAGTAGT 58.342 55.000 0.00 0.0 0.00 2.73 R
2868 13433 0.602106 GCTCAGCAGTCTTGTCAGCA 60.602 55.000 0.00 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.153349 GGTGGAGATCAAGGCCGTC 60.153 63.158 0.00 0.00 0.00 4.79
54 55 0.036388 TGGAGATCAAGGCCGTCAAC 60.036 55.000 0.00 0.00 0.00 3.18
55 56 0.250513 GGAGATCAAGGCCGTCAACT 59.749 55.000 0.00 0.00 0.00 3.16
57 58 2.541556 GAGATCAAGGCCGTCAACTAC 58.458 52.381 0.00 0.00 0.00 2.73
68 69 0.319297 GTCAACTACGGCGACACCTT 60.319 55.000 16.62 0.00 35.61 3.50
71 72 1.200716 CAACTACGGCGACACCTTCTA 59.799 52.381 16.62 0.00 35.61 2.10
73 74 0.247974 CTACGGCGACACCTTCTACG 60.248 60.000 16.62 0.00 35.61 3.51
74 75 0.673333 TACGGCGACACCTTCTACGA 60.673 55.000 16.62 0.00 35.61 3.43
77 78 1.211969 GCGACACCTTCTACGAGCA 59.788 57.895 0.00 0.00 0.00 4.26
78 79 0.798771 GCGACACCTTCTACGAGCAG 60.799 60.000 0.00 0.00 0.00 4.24
80 81 1.736126 CGACACCTTCTACGAGCAGTA 59.264 52.381 0.00 0.00 0.00 2.74
81 82 2.475852 CGACACCTTCTACGAGCAGTAC 60.476 54.545 0.00 0.00 0.00 2.73
83 84 1.093159 ACCTTCTACGAGCAGTACGG 58.907 55.000 0.00 0.00 34.93 4.02
85 86 1.376543 CTTCTACGAGCAGTACGGGA 58.623 55.000 0.00 0.00 34.93 5.14
86 87 1.948145 CTTCTACGAGCAGTACGGGAT 59.052 52.381 0.00 0.00 34.93 3.85
87 88 1.306148 TCTACGAGCAGTACGGGATG 58.694 55.000 0.00 0.00 34.93 3.51
88 89 0.317938 CTACGAGCAGTACGGGATGC 60.318 60.000 0.00 0.00 42.87 3.91
92 93 2.415843 GCAGTACGGGATGCGCTA 59.584 61.111 9.73 0.00 31.87 4.26
93 94 1.949631 GCAGTACGGGATGCGCTAC 60.950 63.158 9.73 0.88 31.87 3.58
94 95 1.299926 CAGTACGGGATGCGCTACC 60.300 63.158 9.73 12.02 0.00 3.18
106 107 2.817035 CGCTACCGCAACAACTACA 58.183 52.632 0.00 0.00 35.30 2.74
107 108 1.355971 CGCTACCGCAACAACTACAT 58.644 50.000 0.00 0.00 35.30 2.29
109 110 1.323534 GCTACCGCAACAACTACATCG 59.676 52.381 0.00 0.00 35.78 3.84
110 111 1.924524 CTACCGCAACAACTACATCGG 59.075 52.381 0.00 0.00 42.24 4.18
111 112 1.296056 ACCGCAACAACTACATCGGC 61.296 55.000 0.00 0.00 40.41 5.54
112 113 1.019278 CCGCAACAACTACATCGGCT 61.019 55.000 0.00 0.00 0.00 5.52
114 115 1.323534 CGCAACAACTACATCGGCTAC 59.676 52.381 0.00 0.00 0.00 3.58
116 117 2.739913 GCAACAACTACATCGGCTACAA 59.260 45.455 0.00 0.00 0.00 2.41
117 118 3.424433 GCAACAACTACATCGGCTACAAC 60.424 47.826 0.00 0.00 0.00 3.32
118 119 3.671008 ACAACTACATCGGCTACAACA 57.329 42.857 0.00 0.00 0.00 3.33
119 120 3.585862 ACAACTACATCGGCTACAACAG 58.414 45.455 0.00 0.00 0.00 3.16
133 134 5.330271 CTACAACAGCAACAACTACTGAC 57.670 43.478 0.00 0.00 35.38 3.51
134 135 3.873910 ACAACAGCAACAACTACTGACT 58.126 40.909 0.00 0.00 35.38 3.41
135 136 3.623060 ACAACAGCAACAACTACTGACTG 59.377 43.478 0.00 0.00 35.38 3.51
137 138 3.458189 ACAGCAACAACTACTGACTGAC 58.542 45.455 0.00 0.00 35.38 3.51
138 139 2.472861 CAGCAACAACTACTGACTGACG 59.527 50.000 0.00 0.00 33.10 4.35
142 143 3.851976 ACAACTACTGACTGACGATCC 57.148 47.619 0.00 0.00 0.00 3.36
143 144 3.154710 ACAACTACTGACTGACGATCCA 58.845 45.455 0.00 0.00 0.00 3.41
144 145 3.057456 ACAACTACTGACTGACGATCCAC 60.057 47.826 0.00 0.00 0.00 4.02
145 146 2.093106 ACTACTGACTGACGATCCACC 58.907 52.381 0.00 0.00 0.00 4.61
146 147 1.405821 CTACTGACTGACGATCCACCC 59.594 57.143 0.00 0.00 0.00 4.61
149 150 0.895530 TGACTGACGATCCACCCTTC 59.104 55.000 0.00 0.00 0.00 3.46
150 151 0.175989 GACTGACGATCCACCCTTCC 59.824 60.000 0.00 0.00 0.00 3.46
151 152 0.544357 ACTGACGATCCACCCTTCCA 60.544 55.000 0.00 0.00 0.00 3.53
152 153 0.833287 CTGACGATCCACCCTTCCAT 59.167 55.000 0.00 0.00 0.00 3.41
153 154 2.039418 CTGACGATCCACCCTTCCATA 58.961 52.381 0.00 0.00 0.00 2.74
154 155 2.634940 CTGACGATCCACCCTTCCATAT 59.365 50.000 0.00 0.00 0.00 1.78
155 156 2.368548 TGACGATCCACCCTTCCATATG 59.631 50.000 0.00 0.00 0.00 1.78
157 158 2.368875 ACGATCCACCCTTCCATATGAC 59.631 50.000 3.65 0.00 0.00 3.06
158 159 2.368548 CGATCCACCCTTCCATATGACA 59.631 50.000 3.65 0.00 0.00 3.58
159 160 3.744660 GATCCACCCTTCCATATGACAC 58.255 50.000 3.65 0.00 0.00 3.67
160 161 2.845659 TCCACCCTTCCATATGACACT 58.154 47.619 3.65 0.00 0.00 3.55
161 162 4.002256 TCCACCCTTCCATATGACACTA 57.998 45.455 3.65 0.00 0.00 2.74
162 163 4.566837 TCCACCCTTCCATATGACACTAT 58.433 43.478 3.65 0.00 0.00 2.12
163 164 4.593206 TCCACCCTTCCATATGACACTATC 59.407 45.833 3.65 0.00 0.00 2.08
164 165 4.263068 CCACCCTTCCATATGACACTATCC 60.263 50.000 3.65 0.00 0.00 2.59
165 166 4.594920 CACCCTTCCATATGACACTATCCT 59.405 45.833 3.65 0.00 0.00 3.24
166 167 5.072329 CACCCTTCCATATGACACTATCCTT 59.928 44.000 3.65 0.00 0.00 3.36
167 168 5.672194 ACCCTTCCATATGACACTATCCTTT 59.328 40.000 3.65 0.00 0.00 3.11
169 170 6.712547 CCCTTCCATATGACACTATCCTTTTC 59.287 42.308 3.65 0.00 0.00 2.29
170 171 6.712547 CCTTCCATATGACACTATCCTTTTCC 59.287 42.308 3.65 0.00 0.00 3.13
172 173 5.365605 TCCATATGACACTATCCTTTTCCGT 59.634 40.000 3.65 0.00 0.00 4.69
176 177 5.223449 TGACACTATCCTTTTCCGTTTCT 57.777 39.130 0.00 0.00 0.00 2.52
177 178 5.617252 TGACACTATCCTTTTCCGTTTCTT 58.383 37.500 0.00 0.00 0.00 2.52
178 179 6.761312 TGACACTATCCTTTTCCGTTTCTTA 58.239 36.000 0.00 0.00 0.00 2.10
179 180 7.391620 TGACACTATCCTTTTCCGTTTCTTAT 58.608 34.615 0.00 0.00 0.00 1.73
180 181 8.533657 TGACACTATCCTTTTCCGTTTCTTATA 58.466 33.333 0.00 0.00 0.00 0.98
181 182 9.543783 GACACTATCCTTTTCCGTTTCTTATAT 57.456 33.333 0.00 0.00 0.00 0.86
182 183 9.543783 ACACTATCCTTTTCCGTTTCTTATATC 57.456 33.333 0.00 0.00 0.00 1.63
183 184 8.989980 CACTATCCTTTTCCGTTTCTTATATCC 58.010 37.037 0.00 0.00 0.00 2.59
184 185 8.155510 ACTATCCTTTTCCGTTTCTTATATCCC 58.844 37.037 0.00 0.00 0.00 3.85
185 186 6.570654 TCCTTTTCCGTTTCTTATATCCCT 57.429 37.500 0.00 0.00 0.00 4.20
186 187 6.965607 TCCTTTTCCGTTTCTTATATCCCTT 58.034 36.000 0.00 0.00 0.00 3.95
187 188 6.826741 TCCTTTTCCGTTTCTTATATCCCTTG 59.173 38.462 0.00 0.00 0.00 3.61
188 189 6.602009 CCTTTTCCGTTTCTTATATCCCTTGT 59.398 38.462 0.00 0.00 0.00 3.16
190 191 5.286267 TCCGTTTCTTATATCCCTTGTCC 57.714 43.478 0.00 0.00 0.00 4.02
191 192 4.966805 TCCGTTTCTTATATCCCTTGTCCT 59.033 41.667 0.00 0.00 0.00 3.85
193 194 5.298347 CGTTTCTTATATCCCTTGTCCTCC 58.702 45.833 0.00 0.00 0.00 4.30
194 195 5.070580 CGTTTCTTATATCCCTTGTCCTCCT 59.929 44.000 0.00 0.00 0.00 3.69
196 197 4.408276 TCTTATATCCCTTGTCCTCCTCG 58.592 47.826 0.00 0.00 0.00 4.63
197 198 2.777459 ATATCCCTTGTCCTCCTCGT 57.223 50.000 0.00 0.00 0.00 4.18
199 200 1.196012 ATCCCTTGTCCTCCTCGTTC 58.804 55.000 0.00 0.00 0.00 3.95
202 203 0.533032 CCTTGTCCTCCTCGTTCCTC 59.467 60.000 0.00 0.00 0.00 3.71
204 205 1.618837 CTTGTCCTCCTCGTTCCTCAA 59.381 52.381 0.00 0.00 0.00 3.02
205 206 1.257743 TGTCCTCCTCGTTCCTCAAG 58.742 55.000 0.00 0.00 0.00 3.02
207 208 1.153745 CCTCCTCGTTCCTCAAGCG 60.154 63.158 0.00 0.00 0.00 4.68
208 209 1.807573 CTCCTCGTTCCTCAAGCGC 60.808 63.158 0.00 0.00 0.00 5.92
210 211 1.807573 CCTCGTTCCTCAAGCGCTC 60.808 63.158 12.06 0.00 0.00 5.03
211 212 1.080501 CTCGTTCCTCAAGCGCTCA 60.081 57.895 12.06 0.00 0.00 4.26
214 215 1.630244 CGTTCCTCAAGCGCTCAAGG 61.630 60.000 25.00 25.00 0.00 3.61
216 217 0.396435 TTCCTCAAGCGCTCAAGGAA 59.604 50.000 33.32 33.32 43.79 3.36
218 219 0.731417 CCTCAAGCGCTCAAGGAATG 59.269 55.000 26.22 13.48 0.00 2.67
219 220 1.446907 CTCAAGCGCTCAAGGAATGT 58.553 50.000 12.06 0.00 0.00 2.71
220 221 2.621338 CTCAAGCGCTCAAGGAATGTA 58.379 47.619 12.06 0.00 0.00 2.29
222 223 2.742053 TCAAGCGCTCAAGGAATGTAAC 59.258 45.455 12.06 0.00 0.00 2.50
224 225 0.373716 GCGCTCAAGGAATGTAACGG 59.626 55.000 0.00 0.00 0.00 4.44
225 226 1.006832 CGCTCAAGGAATGTAACGGG 58.993 55.000 0.00 0.00 0.00 5.28
227 228 2.280628 GCTCAAGGAATGTAACGGGAG 58.719 52.381 0.00 0.00 0.00 4.30
228 229 2.093658 GCTCAAGGAATGTAACGGGAGA 60.094 50.000 0.00 0.00 0.00 3.71
229 230 3.618997 GCTCAAGGAATGTAACGGGAGAA 60.619 47.826 0.00 0.00 0.00 2.87
230 231 4.575885 CTCAAGGAATGTAACGGGAGAAA 58.424 43.478 0.00 0.00 0.00 2.52
231 232 4.975631 TCAAGGAATGTAACGGGAGAAAA 58.024 39.130 0.00 0.00 0.00 2.29
232 233 5.001232 TCAAGGAATGTAACGGGAGAAAAG 58.999 41.667 0.00 0.00 0.00 2.27
235 236 3.939592 GGAATGTAACGGGAGAAAAGAGG 59.060 47.826 0.00 0.00 0.00 3.69
236 237 4.323257 GGAATGTAACGGGAGAAAAGAGGA 60.323 45.833 0.00 0.00 0.00 3.71
237 238 4.903045 ATGTAACGGGAGAAAAGAGGAA 57.097 40.909 0.00 0.00 0.00 3.36
238 239 4.267349 TGTAACGGGAGAAAAGAGGAAG 57.733 45.455 0.00 0.00 0.00 3.46
239 240 3.644738 TGTAACGGGAGAAAAGAGGAAGT 59.355 43.478 0.00 0.00 0.00 3.01
240 241 4.834496 TGTAACGGGAGAAAAGAGGAAGTA 59.166 41.667 0.00 0.00 0.00 2.24
241 242 4.538746 AACGGGAGAAAAGAGGAAGTAG 57.461 45.455 0.00 0.00 0.00 2.57
243 244 4.158015 ACGGGAGAAAAGAGGAAGTAGAA 58.842 43.478 0.00 0.00 0.00 2.10
244 245 4.591924 ACGGGAGAAAAGAGGAAGTAGAAA 59.408 41.667 0.00 0.00 0.00 2.52
246 247 5.813157 CGGGAGAAAAGAGGAAGTAGAAATC 59.187 44.000 0.00 0.00 0.00 2.17
247 248 6.574465 CGGGAGAAAAGAGGAAGTAGAAATCA 60.574 42.308 0.00 0.00 0.00 2.57
248 249 6.821160 GGGAGAAAAGAGGAAGTAGAAATCAG 59.179 42.308 0.00 0.00 0.00 2.90
250 251 8.532819 GGAGAAAAGAGGAAGTAGAAATCAGTA 58.467 37.037 0.00 0.00 0.00 2.74
251 252 9.581099 GAGAAAAGAGGAAGTAGAAATCAGTAG 57.419 37.037 0.00 0.00 0.00 2.57
252 253 9.095700 AGAAAAGAGGAAGTAGAAATCAGTAGT 57.904 33.333 0.00 0.00 0.00 2.73
253 254 9.361315 GAAAAGAGGAAGTAGAAATCAGTAGTC 57.639 37.037 0.00 0.00 0.00 2.59
254 255 8.658840 AAAGAGGAAGTAGAAATCAGTAGTCT 57.341 34.615 0.00 0.00 0.00 3.24
255 256 7.875327 AGAGGAAGTAGAAATCAGTAGTCTC 57.125 40.000 0.00 0.00 0.00 3.36
257 258 8.058847 AGAGGAAGTAGAAATCAGTAGTCTCAT 58.941 37.037 0.00 0.00 0.00 2.90
258 259 8.006298 AGGAAGTAGAAATCAGTAGTCTCATG 57.994 38.462 0.00 0.00 0.00 3.07
259 260 6.699642 GGAAGTAGAAATCAGTAGTCTCATGC 59.300 42.308 0.00 0.00 0.00 4.06
260 261 6.155475 AGTAGAAATCAGTAGTCTCATGCC 57.845 41.667 0.00 0.00 0.00 4.40
262 263 5.690464 AGAAATCAGTAGTCTCATGCCTT 57.310 39.130 0.00 0.00 0.00 4.35
263 264 6.798427 AGAAATCAGTAGTCTCATGCCTTA 57.202 37.500 0.00 0.00 0.00 2.69
264 265 6.815089 AGAAATCAGTAGTCTCATGCCTTAG 58.185 40.000 0.00 0.00 0.00 2.18
265 266 6.609212 AGAAATCAGTAGTCTCATGCCTTAGA 59.391 38.462 0.00 0.00 0.00 2.10
266 267 6.992664 AATCAGTAGTCTCATGCCTTAGAT 57.007 37.500 0.00 0.00 0.00 1.98
267 268 6.992664 ATCAGTAGTCTCATGCCTTAGATT 57.007 37.500 0.00 0.00 0.00 2.40
268 269 6.154203 TCAGTAGTCTCATGCCTTAGATTG 57.846 41.667 0.00 0.00 0.00 2.67
271 272 3.539604 AGTCTCATGCCTTAGATTGTGC 58.460 45.455 0.00 0.00 0.00 4.57
272 273 3.054875 AGTCTCATGCCTTAGATTGTGCA 60.055 43.478 0.00 0.00 38.23 4.57
274 275 3.691118 TCTCATGCCTTAGATTGTGCAAC 59.309 43.478 0.00 0.00 37.27 4.17
275 276 2.419673 TCATGCCTTAGATTGTGCAACG 59.580 45.455 0.00 0.00 42.39 4.10
276 277 1.164411 TGCCTTAGATTGTGCAACGG 58.836 50.000 0.00 0.00 42.39 4.44
279 280 2.159517 GCCTTAGATTGTGCAACGGAAG 60.160 50.000 0.00 0.00 42.39 3.46
281 282 3.372206 CCTTAGATTGTGCAACGGAAGAG 59.628 47.826 0.00 0.00 42.39 2.85
282 283 1.160137 AGATTGTGCAACGGAAGAGC 58.840 50.000 0.00 0.00 42.39 4.09
283 284 1.160137 GATTGTGCAACGGAAGAGCT 58.840 50.000 0.00 0.00 42.39 4.09
284 285 0.877071 ATTGTGCAACGGAAGAGCTG 59.123 50.000 0.00 0.00 42.39 4.24
285 286 0.179059 TTGTGCAACGGAAGAGCTGA 60.179 50.000 0.00 0.00 42.39 4.26
287 288 1.004560 TGCAACGGAAGAGCTGAGG 60.005 57.895 0.00 0.00 36.80 3.86
288 289 1.004440 GCAACGGAAGAGCTGAGGT 60.004 57.895 0.00 0.00 34.02 3.85
289 290 0.603975 GCAACGGAAGAGCTGAGGTT 60.604 55.000 0.00 0.00 34.02 3.50
291 292 2.222027 CAACGGAAGAGCTGAGGTTTT 58.778 47.619 0.00 0.00 0.00 2.43
292 293 1.884235 ACGGAAGAGCTGAGGTTTTG 58.116 50.000 0.00 0.00 0.00 2.44
293 294 1.160137 CGGAAGAGCTGAGGTTTTGG 58.840 55.000 0.00 0.00 0.00 3.28
294 295 1.543429 CGGAAGAGCTGAGGTTTTGGT 60.543 52.381 0.00 0.00 0.00 3.67
295 296 2.289444 CGGAAGAGCTGAGGTTTTGGTA 60.289 50.000 0.00 0.00 0.00 3.25
296 297 3.339141 GGAAGAGCTGAGGTTTTGGTAG 58.661 50.000 0.00 0.00 0.00 3.18
297 298 3.244596 GGAAGAGCTGAGGTTTTGGTAGT 60.245 47.826 0.00 0.00 0.00 2.73
298 299 3.409026 AGAGCTGAGGTTTTGGTAGTG 57.591 47.619 0.00 0.00 0.00 2.74
299 300 2.706190 AGAGCTGAGGTTTTGGTAGTGT 59.294 45.455 0.00 0.00 0.00 3.55
300 301 3.901844 AGAGCTGAGGTTTTGGTAGTGTA 59.098 43.478 0.00 0.00 0.00 2.90
301 302 3.995048 GAGCTGAGGTTTTGGTAGTGTAC 59.005 47.826 0.00 0.00 0.00 2.90
314 315 5.552870 GGTAGTGTACCCTGATGAATGAT 57.447 43.478 0.00 0.00 43.18 2.45
316 317 4.428294 AGTGTACCCTGATGAATGATGG 57.572 45.455 0.00 0.00 0.00 3.51
317 318 3.782523 AGTGTACCCTGATGAATGATGGT 59.217 43.478 0.00 0.00 0.00 3.55
318 319 4.130118 GTGTACCCTGATGAATGATGGTC 58.870 47.826 0.00 0.00 0.00 4.02
319 320 3.779738 TGTACCCTGATGAATGATGGTCA 59.220 43.478 0.00 0.00 0.00 4.02
320 321 4.413189 TGTACCCTGATGAATGATGGTCAT 59.587 41.667 0.00 0.00 39.09 3.06
323 324 4.909695 ACCCTGATGAATGATGGTCATAGA 59.090 41.667 0.00 0.00 35.76 1.98
324 325 5.550796 ACCCTGATGAATGATGGTCATAGAT 59.449 40.000 0.00 0.00 35.76 1.98
325 326 6.045224 ACCCTGATGAATGATGGTCATAGATT 59.955 38.462 0.00 0.00 35.76 2.40
329 330 8.617290 TGATGAATGATGGTCATAGATTTCTG 57.383 34.615 0.00 0.00 35.76 3.02
330 331 7.664318 TGATGAATGATGGTCATAGATTTCTGG 59.336 37.037 0.00 0.00 35.76 3.86
331 332 5.766670 TGAATGATGGTCATAGATTTCTGGC 59.233 40.000 0.00 0.00 35.76 4.85
333 334 5.314718 TGATGGTCATAGATTTCTGGCAT 57.685 39.130 0.00 0.00 0.00 4.40
334 335 5.698104 TGATGGTCATAGATTTCTGGCATT 58.302 37.500 0.00 0.00 0.00 3.56
336 337 6.263842 TGATGGTCATAGATTTCTGGCATTTC 59.736 38.462 0.00 0.00 0.00 2.17
337 338 5.759059 TGGTCATAGATTTCTGGCATTTCT 58.241 37.500 0.00 0.00 0.00 2.52
339 340 6.664816 TGGTCATAGATTTCTGGCATTTCTTT 59.335 34.615 0.00 0.00 0.00 2.52
340 341 7.833682 TGGTCATAGATTTCTGGCATTTCTTTA 59.166 33.333 0.00 0.00 0.00 1.85
341 342 8.854117 GGTCATAGATTTCTGGCATTTCTTTAT 58.146 33.333 0.00 0.00 0.00 1.40
342 343 9.674824 GTCATAGATTTCTGGCATTTCTTTATG 57.325 33.333 0.00 0.00 0.00 1.90
343 344 9.412460 TCATAGATTTCTGGCATTTCTTTATGT 57.588 29.630 0.00 0.00 0.00 2.29
352 353 9.219603 TCTGGCATTTCTTTATGTATGTATAGC 57.780 33.333 0.00 0.00 0.00 2.97
353 354 8.916628 TGGCATTTCTTTATGTATGTATAGCA 57.083 30.769 0.00 0.00 0.00 3.49
354 355 8.783093 TGGCATTTCTTTATGTATGTATAGCAC 58.217 33.333 0.00 0.00 0.00 4.40
361 362 9.967346 TCTTTATGTATGTATAGCACTCAAGTC 57.033 33.333 0.00 0.00 0.00 3.01
363 364 9.967346 TTTATGTATGTATAGCACTCAAGTCTC 57.033 33.333 0.00 0.00 0.00 3.36
365 366 7.404671 TGTATGTATAGCACTCAAGTCTCAA 57.595 36.000 0.00 0.00 0.00 3.02
366 367 7.258441 TGTATGTATAGCACTCAAGTCTCAAC 58.742 38.462 0.00 0.00 0.00 3.18
367 368 5.984695 TGTATAGCACTCAAGTCTCAACT 57.015 39.130 0.00 0.00 37.32 3.16
368 369 5.714047 TGTATAGCACTCAAGTCTCAACTG 58.286 41.667 0.00 0.00 35.36 3.16
369 370 1.876322 AGCACTCAAGTCTCAACTGC 58.124 50.000 0.00 0.00 35.36 4.40
370 371 1.415659 AGCACTCAAGTCTCAACTGCT 59.584 47.619 0.00 0.00 35.36 4.24
371 372 2.158842 AGCACTCAAGTCTCAACTGCTT 60.159 45.455 0.00 0.00 35.36 3.91
372 373 2.615912 GCACTCAAGTCTCAACTGCTTT 59.384 45.455 0.00 0.00 35.36 3.51
374 375 3.873361 CACTCAAGTCTCAACTGCTTTGA 59.127 43.478 1.99 1.99 42.26 2.69
375 376 4.514441 CACTCAAGTCTCAACTGCTTTGAT 59.486 41.667 2.31 0.00 43.54 2.57
377 378 6.203530 CACTCAAGTCTCAACTGCTTTGATAA 59.796 38.462 2.31 0.00 43.54 1.75
378 379 6.426328 ACTCAAGTCTCAACTGCTTTGATAAG 59.574 38.462 2.31 0.00 43.54 1.73
379 380 6.291377 TCAAGTCTCAACTGCTTTGATAAGT 58.709 36.000 2.31 0.00 43.54 2.24
380 381 7.441836 TCAAGTCTCAACTGCTTTGATAAGTA 58.558 34.615 2.31 0.00 43.54 2.24
381 382 7.600375 TCAAGTCTCAACTGCTTTGATAAGTAG 59.400 37.037 2.31 0.00 46.06 2.57
391 392 6.522054 TGCTTTGATAAGTAGTAGTATGGGC 58.478 40.000 0.00 0.00 33.74 5.36
393 394 6.647067 GCTTTGATAAGTAGTAGTATGGGCTG 59.353 42.308 0.00 0.00 33.74 4.85
394 395 6.665992 TTGATAAGTAGTAGTATGGGCTGG 57.334 41.667 0.00 0.00 0.00 4.85
396 397 1.718280 AGTAGTAGTATGGGCTGGGC 58.282 55.000 0.00 0.00 0.00 5.36
397 398 1.220750 AGTAGTAGTATGGGCTGGGCT 59.779 52.381 0.00 0.00 0.00 5.19
398 399 1.344763 GTAGTAGTATGGGCTGGGCTG 59.655 57.143 0.00 0.00 0.00 4.85
399 400 1.056700 AGTAGTATGGGCTGGGCTGG 61.057 60.000 0.00 0.00 0.00 4.85
400 401 1.004230 TAGTATGGGCTGGGCTGGT 59.996 57.895 0.00 0.00 0.00 4.00
401 402 1.054406 TAGTATGGGCTGGGCTGGTC 61.054 60.000 0.00 0.00 0.00 4.02
402 403 2.042762 TATGGGCTGGGCTGGTCT 59.957 61.111 0.00 0.00 0.00 3.85
403 404 1.619363 TATGGGCTGGGCTGGTCTT 60.619 57.895 0.00 0.00 0.00 3.01
404 405 1.925285 TATGGGCTGGGCTGGTCTTG 61.925 60.000 0.00 0.00 0.00 3.02
405 406 3.650950 GGGCTGGGCTGGTCTTGA 61.651 66.667 0.00 0.00 0.00 3.02
406 407 2.679716 GGCTGGGCTGGTCTTGAT 59.320 61.111 0.00 0.00 0.00 2.57
407 408 1.751927 GGCTGGGCTGGTCTTGATG 60.752 63.158 0.00 0.00 0.00 3.07
408 409 1.300963 GCTGGGCTGGTCTTGATGA 59.699 57.895 0.00 0.00 0.00 2.92
409 410 0.106819 GCTGGGCTGGTCTTGATGAT 60.107 55.000 0.00 0.00 0.00 2.45
410 411 1.141657 GCTGGGCTGGTCTTGATGATA 59.858 52.381 0.00 0.00 0.00 2.15
411 412 2.843701 CTGGGCTGGTCTTGATGATAC 58.156 52.381 0.00 0.00 0.00 2.24
412 413 2.171237 CTGGGCTGGTCTTGATGATACA 59.829 50.000 0.00 0.00 0.00 2.29
413 414 2.779430 TGGGCTGGTCTTGATGATACAT 59.221 45.455 0.00 0.00 0.00 2.29
414 415 3.202818 TGGGCTGGTCTTGATGATACATT 59.797 43.478 0.00 0.00 0.00 2.71
415 416 3.817647 GGGCTGGTCTTGATGATACATTC 59.182 47.826 0.00 0.00 0.00 2.67
416 417 3.817647 GGCTGGTCTTGATGATACATTCC 59.182 47.826 0.00 0.00 0.00 3.01
418 419 5.221722 GGCTGGTCTTGATGATACATTCCTA 60.222 44.000 0.00 0.00 0.00 2.94
420 421 6.767902 GCTGGTCTTGATGATACATTCCTAAA 59.232 38.462 0.00 0.00 0.00 1.85
421 422 7.283127 GCTGGTCTTGATGATACATTCCTAAAA 59.717 37.037 0.00 0.00 0.00 1.52
422 423 9.347240 CTGGTCTTGATGATACATTCCTAAAAT 57.653 33.333 0.00 0.00 0.00 1.82
423 424 9.123902 TGGTCTTGATGATACATTCCTAAAATG 57.876 33.333 0.00 0.00 0.00 2.32
424 425 8.571336 GGTCTTGATGATACATTCCTAAAATGG 58.429 37.037 3.12 0.00 32.14 3.16
425 426 8.078596 GTCTTGATGATACATTCCTAAAATGGC 58.921 37.037 3.12 0.00 32.14 4.40
428 429 6.491062 TGATGATACATTCCTAAAATGGCTGG 59.509 38.462 3.12 0.00 32.14 4.85
429 430 5.139727 TGATACATTCCTAAAATGGCTGGG 58.860 41.667 3.12 0.00 32.14 4.45
430 431 3.473113 ACATTCCTAAAATGGCTGGGT 57.527 42.857 3.12 0.00 32.14 4.51
431 432 3.099141 ACATTCCTAAAATGGCTGGGTG 58.901 45.455 3.12 0.00 32.14 4.61
434 435 1.992557 TCCTAAAATGGCTGGGTGACT 59.007 47.619 0.00 0.00 0.00 3.41
435 436 3.186283 TCCTAAAATGGCTGGGTGACTA 58.814 45.455 0.00 0.00 0.00 2.59
437 438 2.215942 AAAATGGCTGGGTGACTACC 57.784 50.000 0.00 0.00 46.76 3.18
449 450 3.922910 GGTGACTACCAAGTACCAGTTC 58.077 50.000 0.00 0.00 46.71 3.01
450 451 3.306571 GGTGACTACCAAGTACCAGTTCC 60.307 52.174 0.00 0.00 46.71 3.62
451 452 3.322828 GTGACTACCAAGTACCAGTTCCA 59.677 47.826 0.00 0.00 35.56 3.53
452 453 3.576982 TGACTACCAAGTACCAGTTCCAG 59.423 47.826 0.00 0.00 35.56 3.86
454 455 0.400594 ACCAAGTACCAGTTCCAGGC 59.599 55.000 0.00 0.00 0.00 4.85
455 456 0.322546 CCAAGTACCAGTTCCAGGCC 60.323 60.000 0.00 0.00 0.00 5.19
456 457 0.400213 CAAGTACCAGTTCCAGGCCA 59.600 55.000 5.01 0.00 0.00 5.36
457 458 0.400594 AAGTACCAGTTCCAGGCCAC 59.599 55.000 5.01 0.00 0.00 5.01
458 459 0.473886 AGTACCAGTTCCAGGCCACT 60.474 55.000 5.01 0.00 0.00 4.00
460 461 0.400213 TACCAGTTCCAGGCCACTTG 59.600 55.000 5.01 0.00 0.00 3.16
461 462 1.352622 ACCAGTTCCAGGCCACTTGA 61.353 55.000 5.01 0.00 0.00 3.02
462 463 0.890996 CCAGTTCCAGGCCACTTGAC 60.891 60.000 5.01 0.00 0.00 3.18
463 464 0.109342 CAGTTCCAGGCCACTTGACT 59.891 55.000 5.01 0.00 0.00 3.41
464 465 0.398318 AGTTCCAGGCCACTTGACTC 59.602 55.000 5.01 0.00 0.00 3.36
466 467 1.059584 TTCCAGGCCACTTGACTCCA 61.060 55.000 5.01 0.00 0.00 3.86
467 468 0.842030 TCCAGGCCACTTGACTCCAT 60.842 55.000 5.01 0.00 0.00 3.41
469 470 1.457346 CAGGCCACTTGACTCCATTC 58.543 55.000 5.01 0.00 0.00 2.67
470 471 1.004044 CAGGCCACTTGACTCCATTCT 59.996 52.381 5.01 0.00 0.00 2.40
471 472 1.004044 AGGCCACTTGACTCCATTCTG 59.996 52.381 5.01 0.00 0.00 3.02
472 473 1.003580 GGCCACTTGACTCCATTCTGA 59.996 52.381 0.00 0.00 0.00 3.27
474 475 2.289945 GCCACTTGACTCCATTCTGACT 60.290 50.000 0.00 0.00 0.00 3.41
475 476 3.332919 CCACTTGACTCCATTCTGACTG 58.667 50.000 0.00 0.00 0.00 3.51
476 477 3.332919 CACTTGACTCCATTCTGACTGG 58.667 50.000 7.68 7.68 34.93 4.00
478 479 3.648067 ACTTGACTCCATTCTGACTGGAA 59.352 43.478 16.34 1.15 42.12 3.53
479 480 3.969287 TGACTCCATTCTGACTGGAAG 57.031 47.619 16.34 12.75 42.12 3.46
480 481 3.510459 TGACTCCATTCTGACTGGAAGA 58.490 45.455 16.34 2.60 42.12 2.87
481 482 3.259374 TGACTCCATTCTGACTGGAAGAC 59.741 47.826 16.34 11.21 42.12 3.01
482 483 3.242867 ACTCCATTCTGACTGGAAGACA 58.757 45.455 16.34 0.00 42.12 3.41
485 486 3.054875 TCCATTCTGACTGGAAGACATGG 60.055 47.826 13.70 3.90 39.83 3.66
486 487 3.054875 CCATTCTGACTGGAAGACATGGA 60.055 47.826 8.25 0.00 38.10 3.41
487 488 3.969287 TTCTGACTGGAAGACATGGAG 57.031 47.619 0.00 0.00 38.10 3.86
489 490 2.564504 TCTGACTGGAAGACATGGAGTG 59.435 50.000 0.00 0.00 38.10 3.51
491 492 2.972021 TGACTGGAAGACATGGAGTGAA 59.028 45.455 0.00 0.00 32.69 3.18
492 493 3.584406 TGACTGGAAGACATGGAGTGAAT 59.416 43.478 0.00 0.00 32.69 2.57
493 494 4.187694 GACTGGAAGACATGGAGTGAATC 58.812 47.826 0.00 0.00 37.43 2.52
494 495 3.054802 ACTGGAAGACATGGAGTGAATCC 60.055 47.826 0.00 0.00 43.31 3.01
496 497 4.922533 CTGGAAGACATGGAGTGAATCCTG 60.923 50.000 0.00 0.00 43.18 3.86
503 504 2.134789 GGAGTGAATCCTGCATTGGT 57.865 50.000 0.00 0.00 45.64 3.67
504 505 1.747355 GGAGTGAATCCTGCATTGGTG 59.253 52.381 0.00 0.00 45.64 4.17
505 506 2.618816 GGAGTGAATCCTGCATTGGTGA 60.619 50.000 0.00 0.00 45.64 4.02
507 508 3.698040 GAGTGAATCCTGCATTGGTGAAT 59.302 43.478 0.00 0.00 0.00 2.57
508 509 4.858850 AGTGAATCCTGCATTGGTGAATA 58.141 39.130 0.00 0.00 0.00 1.75
509 510 4.885907 AGTGAATCCTGCATTGGTGAATAG 59.114 41.667 0.00 0.00 0.00 1.73
511 512 2.057137 TCCTGCATTGGTGAATAGGC 57.943 50.000 0.00 0.00 0.00 3.93
512 513 1.284491 TCCTGCATTGGTGAATAGGCA 59.716 47.619 0.00 0.00 0.00 4.75
513 514 2.091720 TCCTGCATTGGTGAATAGGCAT 60.092 45.455 0.00 0.00 0.00 4.40
514 515 2.295349 CCTGCATTGGTGAATAGGCATC 59.705 50.000 0.00 0.00 0.00 3.91
515 516 2.953648 CTGCATTGGTGAATAGGCATCA 59.046 45.455 0.00 0.00 0.00 3.07
522 523 1.672881 GTGAATAGGCATCACACAGGC 59.327 52.381 11.63 0.00 45.13 4.85
523 524 3.581396 GTGAATAGGCATCACACAGGCC 61.581 54.545 11.63 0.00 45.13 5.19
527 528 3.434319 GCATCACACAGGCCGGTG 61.434 66.667 31.20 31.20 44.35 4.94
528 529 3.434319 CATCACACAGGCCGGTGC 61.434 66.667 32.47 0.00 42.55 5.01
529 530 3.640407 ATCACACAGGCCGGTGCT 61.640 61.111 32.47 18.43 42.55 4.40
530 531 3.907260 ATCACACAGGCCGGTGCTG 62.907 63.158 32.47 26.84 42.55 4.41
545 546 2.125310 CTGCCATGGCCGACGTTA 60.125 61.111 33.44 12.43 41.09 3.18
546 547 1.743623 CTGCCATGGCCGACGTTAA 60.744 57.895 33.44 11.64 41.09 2.01
547 548 1.078072 TGCCATGGCCGACGTTAAT 60.078 52.632 33.44 0.00 41.09 1.40
548 549 0.678366 TGCCATGGCCGACGTTAATT 60.678 50.000 33.44 0.00 41.09 1.40
549 550 0.248458 GCCATGGCCGACGTTAATTG 60.248 55.000 27.24 0.00 34.56 2.32
550 551 0.248458 CCATGGCCGACGTTAATTGC 60.248 55.000 0.00 0.00 0.00 3.56
551 552 0.588730 CATGGCCGACGTTAATTGCG 60.589 55.000 0.00 3.26 0.00 4.85
553 554 2.476947 GCCGACGTTAATTGCGCA 59.523 55.556 5.66 5.66 0.00 6.09
554 555 1.861715 GCCGACGTTAATTGCGCAC 60.862 57.895 11.12 0.00 0.00 5.34
555 556 1.576618 CCGACGTTAATTGCGCACG 60.577 57.895 11.12 13.43 39.86 5.34
556 557 2.199436 CGACGTTAATTGCGCACGC 61.199 57.895 11.12 8.33 37.44 5.34
566 567 4.374702 GCGCACGCAGTTGGACAG 62.375 66.667 10.65 0.00 41.61 3.51
567 568 3.716006 CGCACGCAGTTGGACAGG 61.716 66.667 0.00 0.00 41.61 4.00
569 570 2.669569 CACGCAGTTGGACAGGGG 60.670 66.667 0.00 0.00 41.61 4.79
570 571 4.643387 ACGCAGTTGGACAGGGGC 62.643 66.667 0.00 0.00 37.78 5.80
572 573 4.284550 GCAGTTGGACAGGGGCCA 62.285 66.667 4.39 0.00 0.00 5.36
576 577 3.019783 TTGGACAGGGGCCAACAA 58.980 55.556 4.39 0.00 40.32 2.83
577 578 1.546228 TTGGACAGGGGCCAACAAT 59.454 52.632 4.39 0.00 40.32 2.71
578 579 0.105246 TTGGACAGGGGCCAACAATT 60.105 50.000 4.39 0.00 40.32 2.32
579 580 0.105246 TGGACAGGGGCCAACAATTT 60.105 50.000 4.39 0.00 31.13 1.82
580 581 0.608130 GGACAGGGGCCAACAATTTC 59.392 55.000 4.39 0.00 0.00 2.17
581 582 1.632589 GACAGGGGCCAACAATTTCT 58.367 50.000 4.39 0.00 0.00 2.52
582 583 1.546029 GACAGGGGCCAACAATTTCTC 59.454 52.381 4.39 0.00 0.00 2.87
583 584 1.147817 ACAGGGGCCAACAATTTCTCT 59.852 47.619 4.39 0.00 0.00 3.10
584 585 1.821136 CAGGGGCCAACAATTTCTCTC 59.179 52.381 4.39 0.00 0.00 3.20
586 587 1.821136 GGGGCCAACAATTTCTCTCTG 59.179 52.381 4.39 0.00 0.00 3.35
587 588 2.555227 GGGGCCAACAATTTCTCTCTGA 60.555 50.000 4.39 0.00 0.00 3.27
588 589 2.751806 GGGCCAACAATTTCTCTCTGAG 59.248 50.000 4.39 0.00 0.00 3.35
589 590 2.751806 GGCCAACAATTTCTCTCTGAGG 59.248 50.000 4.59 0.00 0.00 3.86
590 591 2.163211 GCCAACAATTTCTCTCTGAGGC 59.837 50.000 4.59 0.00 0.00 4.70
591 592 2.751806 CCAACAATTTCTCTCTGAGGCC 59.248 50.000 4.59 0.00 0.00 5.19
592 593 2.393271 ACAATTTCTCTCTGAGGCCG 57.607 50.000 4.59 0.00 0.00 6.13
593 594 1.065854 ACAATTTCTCTCTGAGGCCGG 60.066 52.381 4.59 0.00 0.00 6.13
651 655 6.119144 ACCCAAAATCAAGAATTACGATCG 57.881 37.500 14.88 14.88 0.00 3.69
705 709 2.071540 CATCATCATCGGATTGACGGG 58.928 52.381 0.00 0.00 0.00 5.28
719 723 5.633601 GGATTGACGGGAATTTTCAGAAAAC 59.366 40.000 10.62 0.00 32.37 2.43
843 862 6.249260 GTGCAGCGTCTTTAAATATCAACAAG 59.751 38.462 0.00 0.00 0.00 3.16
845 864 6.801862 GCAGCGTCTTTAAATATCAACAAGTT 59.198 34.615 0.00 0.00 0.00 2.66
846 865 7.007456 GCAGCGTCTTTAAATATCAACAAGTTC 59.993 37.037 0.00 0.00 0.00 3.01
848 867 8.730680 AGCGTCTTTAAATATCAACAAGTTCAT 58.269 29.630 0.00 0.00 0.00 2.57
849 868 9.982291 GCGTCTTTAAATATCAACAAGTTCATA 57.018 29.630 0.00 0.00 0.00 2.15
859 878 6.012658 TCAACAAGTTCATAACATCTTGGC 57.987 37.500 0.00 0.00 40.74 4.52
860 879 4.685169 ACAAGTTCATAACATCTTGGCG 57.315 40.909 0.00 0.00 40.74 5.69
862 881 4.154195 ACAAGTTCATAACATCTTGGCGTC 59.846 41.667 0.00 0.00 40.74 5.19
863 882 3.270877 AGTTCATAACATCTTGGCGTCC 58.729 45.455 0.00 0.00 0.00 4.79
864 883 2.325583 TCATAACATCTTGGCGTCCC 57.674 50.000 0.00 0.00 0.00 4.46
865 884 1.557371 TCATAACATCTTGGCGTCCCA 59.443 47.619 0.00 0.00 40.06 4.37
870 889 1.675641 ATCTTGGCGTCCCACAAGC 60.676 57.895 0.00 0.00 41.97 4.01
884 903 1.101049 ACAAGCCACAACACCTTCCG 61.101 55.000 0.00 0.00 0.00 4.30
914 933 0.965439 CAAACCTCGCCAAAATCCCA 59.035 50.000 0.00 0.00 0.00 4.37
915 934 1.342819 CAAACCTCGCCAAAATCCCAA 59.657 47.619 0.00 0.00 0.00 4.12
916 935 1.937191 AACCTCGCCAAAATCCCAAT 58.063 45.000 0.00 0.00 0.00 3.16
917 936 1.474330 ACCTCGCCAAAATCCCAATC 58.526 50.000 0.00 0.00 0.00 2.67
918 937 0.381801 CCTCGCCAAAATCCCAATCG 59.618 55.000 0.00 0.00 0.00 3.34
919 938 0.248621 CTCGCCAAAATCCCAATCGC 60.249 55.000 0.00 0.00 0.00 4.58
920 939 1.226945 CGCCAAAATCCCAATCGCC 60.227 57.895 0.00 0.00 0.00 5.54
921 940 1.143838 GCCAAAATCCCAATCGCCC 59.856 57.895 0.00 0.00 0.00 6.13
922 941 1.437160 CCAAAATCCCAATCGCCCG 59.563 57.895 0.00 0.00 0.00 6.13
956 4880 0.546598 ATCGACATCACCCTTTCCCC 59.453 55.000 0.00 0.00 0.00 4.81
957 4881 1.077716 CGACATCACCCTTTCCCCC 60.078 63.158 0.00 0.00 0.00 5.40
1090 5016 1.304630 TACTACCTGCCACGCCTCA 60.305 57.895 0.00 0.00 0.00 3.86
1099 5025 4.899239 CACGCCTCATCTCCGGCC 62.899 72.222 0.00 0.00 43.38 6.13
1253 5209 0.321122 AAGAGCAAGAACGGGAGCAG 60.321 55.000 0.00 0.00 0.00 4.24
1395 5615 1.685224 GACAGGCTGGGTCATGGAA 59.315 57.895 20.34 0.00 35.36 3.53
1722 6438 0.039978 CTGAAGCTGACGACGACACT 60.040 55.000 0.00 0.00 0.00 3.55
1810 6526 2.860735 GCTACTAACAGCATCGAACAGG 59.139 50.000 0.00 0.00 41.40 4.00
1814 6530 5.339008 ACTAACAGCATCGAACAGGATTA 57.661 39.130 0.00 0.00 0.00 1.75
2295 12796 3.070159 TGTTGCTCTACTTCTTGCTCTGT 59.930 43.478 0.00 0.00 0.00 3.41
2297 12798 2.893489 TGCTCTACTTCTTGCTCTGTGA 59.107 45.455 0.00 0.00 0.00 3.58
2298 12799 3.056962 TGCTCTACTTCTTGCTCTGTGAG 60.057 47.826 0.00 0.00 0.00 3.51
2487 13001 9.988815 GGACATATATCTAGTTGACAATGAACT 57.011 33.333 0.00 0.00 37.43 3.01
2616 13153 4.746535 TTGATACGAAATCAGGCTACCA 57.253 40.909 0.00 0.00 0.00 3.25
2719 13256 0.106519 AGTTGCTCAAGCCACCAGTT 60.107 50.000 2.85 0.00 37.40 3.16
2749 13291 5.440610 CCCTATTTTTGTCAGCCTAGTGAT 58.559 41.667 0.00 0.00 0.00 3.06
2750 13292 5.297776 CCCTATTTTTGTCAGCCTAGTGATG 59.702 44.000 0.00 0.00 0.00 3.07
2751 13293 6.115446 CCTATTTTTGTCAGCCTAGTGATGA 58.885 40.000 0.00 0.00 0.00 2.92
2775 13317 2.655090 TCCATTCCTTGTGCAACTGA 57.345 45.000 0.00 0.00 38.04 3.41
2787 13342 6.238621 CCTTGTGCAACTGACAGTAATTGTAA 60.239 38.462 8.91 0.40 37.80 2.41
2868 13433 5.868801 CCATATGAAAAATTGCTTTGTCGGT 59.131 36.000 3.65 0.00 32.11 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.038526 AGAAGGTGTCGCCGTAGTTG 60.039 55.000 0.00 0.00 43.70 3.16
54 55 0.247974 CGTAGAAGGTGTCGCCGTAG 60.248 60.000 0.00 0.00 43.70 3.51
55 56 0.673333 TCGTAGAAGGTGTCGCCGTA 60.673 55.000 0.00 0.00 43.70 4.02
57 58 1.226323 CTCGTAGAAGGTGTCGCCG 60.226 63.158 0.00 0.00 43.70 6.46
58 59 1.516603 GCTCGTAGAAGGTGTCGCC 60.517 63.158 0.00 0.00 34.09 5.54
59 60 0.798771 CTGCTCGTAGAAGGTGTCGC 60.799 60.000 0.00 0.00 34.09 5.19
60 61 0.522180 ACTGCTCGTAGAAGGTGTCG 59.478 55.000 0.00 0.00 34.09 4.35
61 62 2.475852 CGTACTGCTCGTAGAAGGTGTC 60.476 54.545 0.00 0.00 34.09 3.67
62 63 1.467734 CGTACTGCTCGTAGAAGGTGT 59.532 52.381 0.00 0.00 34.09 4.16
63 64 1.202154 CCGTACTGCTCGTAGAAGGTG 60.202 57.143 0.00 0.00 34.09 4.00
64 65 1.093159 CCGTACTGCTCGTAGAAGGT 58.907 55.000 0.00 0.00 34.09 3.50
65 66 0.381089 CCCGTACTGCTCGTAGAAGG 59.619 60.000 0.00 0.00 34.09 3.46
68 69 1.306148 CATCCCGTACTGCTCGTAGA 58.694 55.000 0.00 0.00 0.00 2.59
71 72 2.494918 GCATCCCGTACTGCTCGT 59.505 61.111 0.00 0.00 35.49 4.18
73 74 2.071844 TAGCGCATCCCGTACTGCTC 62.072 60.000 11.47 0.00 39.71 4.26
74 75 2.125326 TAGCGCATCCCGTACTGCT 61.125 57.895 11.47 0.00 39.71 4.24
77 78 2.842256 CGGTAGCGCATCCCGTACT 61.842 63.158 20.08 0.00 39.71 2.73
78 79 2.354305 CGGTAGCGCATCCCGTAC 60.354 66.667 20.08 8.63 39.71 3.67
90 91 1.924524 CCGATGTAGTTGTTGCGGTAG 59.075 52.381 0.00 0.00 34.45 3.18
91 92 1.999048 CCGATGTAGTTGTTGCGGTA 58.001 50.000 0.00 0.00 34.45 4.02
92 93 1.296056 GCCGATGTAGTTGTTGCGGT 61.296 55.000 0.00 0.00 40.74 5.68
93 94 1.019278 AGCCGATGTAGTTGTTGCGG 61.019 55.000 0.00 0.00 41.51 5.69
94 95 1.323534 GTAGCCGATGTAGTTGTTGCG 59.676 52.381 0.00 0.00 0.00 4.85
95 96 2.343101 TGTAGCCGATGTAGTTGTTGC 58.657 47.619 0.00 0.00 0.00 4.17
96 97 3.743911 TGTTGTAGCCGATGTAGTTGTTG 59.256 43.478 0.00 0.00 0.00 3.33
97 98 3.994392 CTGTTGTAGCCGATGTAGTTGTT 59.006 43.478 0.00 0.00 0.00 2.83
98 99 3.585862 CTGTTGTAGCCGATGTAGTTGT 58.414 45.455 0.00 0.00 0.00 3.32
111 112 5.050490 AGTCAGTAGTTGTTGCTGTTGTAG 58.950 41.667 0.00 0.00 40.11 2.74
112 113 4.808895 CAGTCAGTAGTTGTTGCTGTTGTA 59.191 41.667 0.00 0.00 40.11 2.41
114 115 3.871006 TCAGTCAGTAGTTGTTGCTGTTG 59.129 43.478 0.00 0.00 40.11 3.33
116 117 3.458189 GTCAGTCAGTAGTTGTTGCTGT 58.542 45.455 0.00 0.00 40.11 4.40
117 118 2.472861 CGTCAGTCAGTAGTTGTTGCTG 59.527 50.000 0.00 0.00 40.50 4.41
118 119 2.361119 TCGTCAGTCAGTAGTTGTTGCT 59.639 45.455 0.00 0.00 0.00 3.91
119 120 2.739292 TCGTCAGTCAGTAGTTGTTGC 58.261 47.619 0.00 0.00 0.00 4.17
120 121 3.921021 GGATCGTCAGTCAGTAGTTGTTG 59.079 47.826 0.00 0.00 0.00 3.33
122 123 3.057456 GTGGATCGTCAGTCAGTAGTTGT 60.057 47.826 0.00 0.00 0.00 3.32
123 124 3.502920 GTGGATCGTCAGTCAGTAGTTG 58.497 50.000 0.00 0.00 0.00 3.16
125 126 2.093106 GGTGGATCGTCAGTCAGTAGT 58.907 52.381 0.00 0.00 0.00 2.73
126 127 1.405821 GGGTGGATCGTCAGTCAGTAG 59.594 57.143 0.00 0.00 0.00 2.57
127 128 1.005569 AGGGTGGATCGTCAGTCAGTA 59.994 52.381 0.00 0.00 0.00 2.74
128 129 0.251832 AGGGTGGATCGTCAGTCAGT 60.252 55.000 0.00 0.00 0.00 3.41
129 130 0.898320 AAGGGTGGATCGTCAGTCAG 59.102 55.000 0.00 0.00 0.00 3.51
130 131 0.895530 GAAGGGTGGATCGTCAGTCA 59.104 55.000 0.00 0.00 0.00 3.41
131 132 0.175989 GGAAGGGTGGATCGTCAGTC 59.824 60.000 0.00 0.00 0.00 3.51
132 133 0.544357 TGGAAGGGTGGATCGTCAGT 60.544 55.000 0.00 0.00 0.00 3.41
133 134 0.833287 ATGGAAGGGTGGATCGTCAG 59.167 55.000 0.00 0.00 0.00 3.51
134 135 2.168458 TATGGAAGGGTGGATCGTCA 57.832 50.000 0.00 0.00 0.00 4.35
135 136 2.632996 TCATATGGAAGGGTGGATCGTC 59.367 50.000 2.13 0.00 0.00 4.20
137 138 2.368548 TGTCATATGGAAGGGTGGATCG 59.631 50.000 2.13 0.00 0.00 3.69
138 139 3.392616 AGTGTCATATGGAAGGGTGGATC 59.607 47.826 2.13 0.00 0.00 3.36
142 143 4.594920 AGGATAGTGTCATATGGAAGGGTG 59.405 45.833 2.13 0.00 0.00 4.61
143 144 4.832492 AGGATAGTGTCATATGGAAGGGT 58.168 43.478 2.13 0.00 0.00 4.34
144 145 5.832539 AAGGATAGTGTCATATGGAAGGG 57.167 43.478 2.13 0.00 0.00 3.95
145 146 6.712547 GGAAAAGGATAGTGTCATATGGAAGG 59.287 42.308 2.13 0.00 0.00 3.46
146 147 6.425114 CGGAAAAGGATAGTGTCATATGGAAG 59.575 42.308 2.13 0.00 0.00 3.46
149 150 5.611374 ACGGAAAAGGATAGTGTCATATGG 58.389 41.667 2.13 0.00 0.00 2.74
150 151 7.495934 AGAAACGGAAAAGGATAGTGTCATATG 59.504 37.037 0.00 0.00 0.00 1.78
151 152 7.565680 AGAAACGGAAAAGGATAGTGTCATAT 58.434 34.615 0.00 0.00 0.00 1.78
152 153 6.942976 AGAAACGGAAAAGGATAGTGTCATA 58.057 36.000 0.00 0.00 0.00 2.15
153 154 5.805728 AGAAACGGAAAAGGATAGTGTCAT 58.194 37.500 0.00 0.00 0.00 3.06
154 155 5.223449 AGAAACGGAAAAGGATAGTGTCA 57.777 39.130 0.00 0.00 0.00 3.58
155 156 7.845066 ATAAGAAACGGAAAAGGATAGTGTC 57.155 36.000 0.00 0.00 0.00 3.67
157 158 8.989980 GGATATAAGAAACGGAAAAGGATAGTG 58.010 37.037 0.00 0.00 0.00 2.74
158 159 8.155510 GGGATATAAGAAACGGAAAAGGATAGT 58.844 37.037 0.00 0.00 0.00 2.12
159 160 8.376270 AGGGATATAAGAAACGGAAAAGGATAG 58.624 37.037 0.00 0.00 0.00 2.08
160 161 8.271398 AGGGATATAAGAAACGGAAAAGGATA 57.729 34.615 0.00 0.00 0.00 2.59
161 162 7.150447 AGGGATATAAGAAACGGAAAAGGAT 57.850 36.000 0.00 0.00 0.00 3.24
162 163 6.570654 AGGGATATAAGAAACGGAAAAGGA 57.429 37.500 0.00 0.00 0.00 3.36
163 164 6.602009 ACAAGGGATATAAGAAACGGAAAAGG 59.398 38.462 0.00 0.00 0.00 3.11
164 165 7.201705 GGACAAGGGATATAAGAAACGGAAAAG 60.202 40.741 0.00 0.00 0.00 2.27
165 166 6.600427 GGACAAGGGATATAAGAAACGGAAAA 59.400 38.462 0.00 0.00 0.00 2.29
166 167 6.069847 AGGACAAGGGATATAAGAAACGGAAA 60.070 38.462 0.00 0.00 0.00 3.13
167 168 5.427481 AGGACAAGGGATATAAGAAACGGAA 59.573 40.000 0.00 0.00 0.00 4.30
169 170 5.291905 AGGACAAGGGATATAAGAAACGG 57.708 43.478 0.00 0.00 0.00 4.44
170 171 5.070580 AGGAGGACAAGGGATATAAGAAACG 59.929 44.000 0.00 0.00 0.00 3.60
172 173 5.304614 CGAGGAGGACAAGGGATATAAGAAA 59.695 44.000 0.00 0.00 0.00 2.52
176 177 4.194678 ACGAGGAGGACAAGGGATATAA 57.805 45.455 0.00 0.00 0.00 0.98
177 178 3.897657 ACGAGGAGGACAAGGGATATA 57.102 47.619 0.00 0.00 0.00 0.86
178 179 2.777459 ACGAGGAGGACAAGGGATAT 57.223 50.000 0.00 0.00 0.00 1.63
179 180 2.385803 GAACGAGGAGGACAAGGGATA 58.614 52.381 0.00 0.00 0.00 2.59
180 181 1.196012 GAACGAGGAGGACAAGGGAT 58.804 55.000 0.00 0.00 0.00 3.85
181 182 0.903454 GGAACGAGGAGGACAAGGGA 60.903 60.000 0.00 0.00 0.00 4.20
182 183 0.905337 AGGAACGAGGAGGACAAGGG 60.905 60.000 0.00 0.00 0.00 3.95
183 184 0.533032 GAGGAACGAGGAGGACAAGG 59.467 60.000 0.00 0.00 0.00 3.61
184 185 1.257743 TGAGGAACGAGGAGGACAAG 58.742 55.000 0.00 0.00 0.00 3.16
185 186 1.618837 CTTGAGGAACGAGGAGGACAA 59.381 52.381 0.00 0.00 0.00 3.18
186 187 1.257743 CTTGAGGAACGAGGAGGACA 58.742 55.000 0.00 0.00 0.00 4.02
187 188 0.108567 GCTTGAGGAACGAGGAGGAC 60.109 60.000 0.00 0.00 0.00 3.85
188 189 1.595993 CGCTTGAGGAACGAGGAGGA 61.596 60.000 0.00 0.00 0.00 3.71
190 191 1.807573 GCGCTTGAGGAACGAGGAG 60.808 63.158 0.00 0.00 0.00 3.69
191 192 2.214181 GAGCGCTTGAGGAACGAGGA 62.214 60.000 13.26 0.00 0.00 3.71
193 194 0.667487 TTGAGCGCTTGAGGAACGAG 60.667 55.000 13.26 0.00 0.00 4.18
194 195 0.667487 CTTGAGCGCTTGAGGAACGA 60.667 55.000 13.26 0.00 0.00 3.85
196 197 0.320771 TCCTTGAGCGCTTGAGGAAC 60.321 55.000 29.59 10.96 35.45 3.62
197 198 0.396435 TTCCTTGAGCGCTTGAGGAA 59.604 50.000 33.75 33.75 43.91 3.36
199 200 0.731417 CATTCCTTGAGCGCTTGAGG 59.269 55.000 25.78 25.78 0.00 3.86
202 203 2.474526 CGTTACATTCCTTGAGCGCTTG 60.475 50.000 13.26 6.38 0.00 4.01
204 205 1.359848 CGTTACATTCCTTGAGCGCT 58.640 50.000 11.27 11.27 0.00 5.92
205 206 0.373716 CCGTTACATTCCTTGAGCGC 59.626 55.000 0.00 0.00 0.00 5.92
207 208 2.093658 TCTCCCGTTACATTCCTTGAGC 60.094 50.000 0.00 0.00 0.00 4.26
208 209 3.887621 TCTCCCGTTACATTCCTTGAG 57.112 47.619 0.00 0.00 0.00 3.02
210 211 5.001232 TCTTTTCTCCCGTTACATTCCTTG 58.999 41.667 0.00 0.00 0.00 3.61
211 212 5.237236 TCTTTTCTCCCGTTACATTCCTT 57.763 39.130 0.00 0.00 0.00 3.36
214 215 4.828829 TCCTCTTTTCTCCCGTTACATTC 58.171 43.478 0.00 0.00 0.00 2.67
216 217 4.286291 ACTTCCTCTTTTCTCCCGTTACAT 59.714 41.667 0.00 0.00 0.00 2.29
218 219 4.268797 ACTTCCTCTTTTCTCCCGTTAC 57.731 45.455 0.00 0.00 0.00 2.50
219 220 5.327732 TCTACTTCCTCTTTTCTCCCGTTA 58.672 41.667 0.00 0.00 0.00 3.18
220 221 4.158015 TCTACTTCCTCTTTTCTCCCGTT 58.842 43.478 0.00 0.00 0.00 4.44
222 223 4.803098 TTCTACTTCCTCTTTTCTCCCG 57.197 45.455 0.00 0.00 0.00 5.14
224 225 7.390823 ACTGATTTCTACTTCCTCTTTTCTCC 58.609 38.462 0.00 0.00 0.00 3.71
225 226 9.581099 CTACTGATTTCTACTTCCTCTTTTCTC 57.419 37.037 0.00 0.00 0.00 2.87
227 228 9.361315 GACTACTGATTTCTACTTCCTCTTTTC 57.639 37.037 0.00 0.00 0.00 2.29
228 229 9.095700 AGACTACTGATTTCTACTTCCTCTTTT 57.904 33.333 0.00 0.00 0.00 2.27
229 230 8.658840 AGACTACTGATTTCTACTTCCTCTTT 57.341 34.615 0.00 0.00 0.00 2.52
230 231 7.891183 TGAGACTACTGATTTCTACTTCCTCTT 59.109 37.037 0.00 0.00 0.00 2.85
231 232 7.406916 TGAGACTACTGATTTCTACTTCCTCT 58.593 38.462 0.00 0.00 0.00 3.69
232 233 7.633193 TGAGACTACTGATTTCTACTTCCTC 57.367 40.000 0.00 0.00 0.00 3.71
235 236 6.699642 GGCATGAGACTACTGATTTCTACTTC 59.300 42.308 0.00 0.00 0.00 3.01
236 237 6.382570 AGGCATGAGACTACTGATTTCTACTT 59.617 38.462 0.00 0.00 0.00 2.24
237 238 5.896678 AGGCATGAGACTACTGATTTCTACT 59.103 40.000 0.00 0.00 0.00 2.57
238 239 6.155475 AGGCATGAGACTACTGATTTCTAC 57.845 41.667 0.00 0.00 0.00 2.59
239 240 6.798427 AAGGCATGAGACTACTGATTTCTA 57.202 37.500 0.00 0.00 27.97 2.10
240 241 5.690464 AAGGCATGAGACTACTGATTTCT 57.310 39.130 0.00 0.00 27.97 2.52
241 242 6.810911 TCTAAGGCATGAGACTACTGATTTC 58.189 40.000 0.00 0.00 27.97 2.17
243 244 6.992664 ATCTAAGGCATGAGACTACTGATT 57.007 37.500 0.00 0.00 27.97 2.57
244 245 6.326064 ACAATCTAAGGCATGAGACTACTGAT 59.674 38.462 0.00 0.00 27.97 2.90
246 247 5.752472 CACAATCTAAGGCATGAGACTACTG 59.248 44.000 0.00 0.00 27.97 2.74
247 248 5.683509 GCACAATCTAAGGCATGAGACTACT 60.684 44.000 0.00 0.00 27.97 2.57
248 249 4.509600 GCACAATCTAAGGCATGAGACTAC 59.490 45.833 0.00 0.00 27.97 2.73
250 251 3.054875 TGCACAATCTAAGGCATGAGACT 60.055 43.478 0.00 0.00 30.77 3.24
251 252 3.273434 TGCACAATCTAAGGCATGAGAC 58.727 45.455 0.00 0.00 0.00 3.36
252 253 3.632643 TGCACAATCTAAGGCATGAGA 57.367 42.857 0.00 0.00 0.00 3.27
253 254 3.486375 CGTTGCACAATCTAAGGCATGAG 60.486 47.826 0.00 0.00 35.98 2.90
254 255 2.419673 CGTTGCACAATCTAAGGCATGA 59.580 45.455 0.00 0.00 35.98 3.07
255 256 2.478370 CCGTTGCACAATCTAAGGCATG 60.478 50.000 0.00 0.00 35.98 4.06
257 258 1.164411 CCGTTGCACAATCTAAGGCA 58.836 50.000 0.00 0.00 0.00 4.75
258 259 1.448985 TCCGTTGCACAATCTAAGGC 58.551 50.000 0.00 0.00 0.00 4.35
259 260 3.334691 TCTTCCGTTGCACAATCTAAGG 58.665 45.455 0.00 0.00 0.00 2.69
260 261 3.181516 GCTCTTCCGTTGCACAATCTAAG 60.182 47.826 0.00 0.00 0.00 2.18
262 263 2.028112 AGCTCTTCCGTTGCACAATCTA 60.028 45.455 0.00 0.00 0.00 1.98
263 264 1.160137 GCTCTTCCGTTGCACAATCT 58.840 50.000 0.00 0.00 0.00 2.40
264 265 1.135859 CAGCTCTTCCGTTGCACAATC 60.136 52.381 0.00 0.00 0.00 2.67
265 266 0.877071 CAGCTCTTCCGTTGCACAAT 59.123 50.000 0.00 0.00 0.00 2.71
266 267 0.179059 TCAGCTCTTCCGTTGCACAA 60.179 50.000 0.00 0.00 0.00 3.33
267 268 0.601046 CTCAGCTCTTCCGTTGCACA 60.601 55.000 0.00 0.00 0.00 4.57
268 269 1.294659 CCTCAGCTCTTCCGTTGCAC 61.295 60.000 0.00 0.00 0.00 4.57
271 272 1.884235 AAACCTCAGCTCTTCCGTTG 58.116 50.000 0.00 0.00 0.00 4.10
272 273 2.222027 CAAAACCTCAGCTCTTCCGTT 58.778 47.619 0.00 0.00 0.00 4.44
274 275 1.160137 CCAAAACCTCAGCTCTTCCG 58.840 55.000 0.00 0.00 0.00 4.30
275 276 2.278332 ACCAAAACCTCAGCTCTTCC 57.722 50.000 0.00 0.00 0.00 3.46
276 277 3.748568 CACTACCAAAACCTCAGCTCTTC 59.251 47.826 0.00 0.00 0.00 2.87
279 280 3.127425 ACACTACCAAAACCTCAGCTC 57.873 47.619 0.00 0.00 0.00 4.09
293 294 5.163301 ACCATCATTCATCAGGGTACACTAC 60.163 44.000 0.00 0.00 0.00 2.73
294 295 4.968719 ACCATCATTCATCAGGGTACACTA 59.031 41.667 0.00 0.00 0.00 2.74
295 296 3.782523 ACCATCATTCATCAGGGTACACT 59.217 43.478 0.00 0.00 0.00 3.55
296 297 4.130118 GACCATCATTCATCAGGGTACAC 58.870 47.826 0.00 0.00 0.00 2.90
297 298 3.779738 TGACCATCATTCATCAGGGTACA 59.220 43.478 0.00 0.00 0.00 2.90
298 299 4.422073 TGACCATCATTCATCAGGGTAC 57.578 45.455 0.00 0.00 0.00 3.34
299 300 6.084060 TCTATGACCATCATTCATCAGGGTA 58.916 40.000 0.00 0.00 38.26 3.69
300 301 4.909695 TCTATGACCATCATTCATCAGGGT 59.090 41.667 0.00 0.00 38.26 4.34
301 302 5.494390 TCTATGACCATCATTCATCAGGG 57.506 43.478 0.00 0.00 38.26 4.45
302 303 7.883833 AGAAATCTATGACCATCATTCATCAGG 59.116 37.037 0.00 0.00 38.26 3.86
303 304 8.722394 CAGAAATCTATGACCATCATTCATCAG 58.278 37.037 0.00 0.00 38.26 2.90
304 305 7.664318 CCAGAAATCTATGACCATCATTCATCA 59.336 37.037 0.00 0.00 38.26 3.07
305 306 7.361885 GCCAGAAATCTATGACCATCATTCATC 60.362 40.741 0.00 0.00 38.26 2.92
306 307 6.433404 GCCAGAAATCTATGACCATCATTCAT 59.567 38.462 0.00 0.00 38.26 2.57
307 308 5.766670 GCCAGAAATCTATGACCATCATTCA 59.233 40.000 0.00 0.00 38.26 2.57
308 309 5.766670 TGCCAGAAATCTATGACCATCATTC 59.233 40.000 0.00 0.00 38.26 2.67
309 310 5.698104 TGCCAGAAATCTATGACCATCATT 58.302 37.500 0.00 0.00 38.26 2.57
311 312 4.776435 TGCCAGAAATCTATGACCATCA 57.224 40.909 0.00 0.00 0.00 3.07
312 313 6.489361 AGAAATGCCAGAAATCTATGACCATC 59.511 38.462 0.00 0.00 0.00 3.51
313 314 6.371278 AGAAATGCCAGAAATCTATGACCAT 58.629 36.000 0.00 0.00 0.00 3.55
314 315 5.759059 AGAAATGCCAGAAATCTATGACCA 58.241 37.500 0.00 0.00 0.00 4.02
316 317 9.674824 CATAAAGAAATGCCAGAAATCTATGAC 57.325 33.333 0.00 0.00 0.00 3.06
317 318 9.412460 ACATAAAGAAATGCCAGAAATCTATGA 57.588 29.630 0.00 0.00 0.00 2.15
329 330 9.003658 AGTGCTATACATACATAAAGAAATGCC 57.996 33.333 0.00 0.00 0.00 4.40
336 337 9.973450 AGACTTGAGTGCTATACATACATAAAG 57.027 33.333 0.00 0.00 0.00 1.85
337 338 9.967346 GAGACTTGAGTGCTATACATACATAAA 57.033 33.333 0.00 0.00 0.00 1.40
339 340 8.691661 TGAGACTTGAGTGCTATACATACATA 57.308 34.615 0.00 0.00 0.00 2.29
340 341 7.588497 TGAGACTTGAGTGCTATACATACAT 57.412 36.000 0.00 0.00 0.00 2.29
341 342 7.122799 AGTTGAGACTTGAGTGCTATACATACA 59.877 37.037 0.00 0.00 29.87 2.29
342 343 7.433719 CAGTTGAGACTTGAGTGCTATACATAC 59.566 40.741 0.00 0.00 32.54 2.39
343 344 7.484140 CAGTTGAGACTTGAGTGCTATACATA 58.516 38.462 0.00 0.00 32.54 2.29
349 350 2.630098 AGCAGTTGAGACTTGAGTGCTA 59.370 45.455 15.69 0.00 45.48 3.49
351 352 1.876322 AGCAGTTGAGACTTGAGTGC 58.124 50.000 9.59 9.59 39.44 4.40
352 353 3.873361 TCAAAGCAGTTGAGACTTGAGTG 59.127 43.478 0.00 0.00 41.47 3.51
353 354 4.142609 TCAAAGCAGTTGAGACTTGAGT 57.857 40.909 0.00 0.00 41.47 3.41
363 364 9.035607 CCATACTACTACTTATCAAAGCAGTTG 57.964 37.037 0.00 0.00 39.54 3.16
365 366 7.687103 GCCCATACTACTACTTATCAAAGCAGT 60.687 40.741 0.00 0.00 41.34 4.40
366 367 6.647067 GCCCATACTACTACTTATCAAAGCAG 59.353 42.308 0.00 0.00 36.05 4.24
367 368 6.326583 AGCCCATACTACTACTTATCAAAGCA 59.673 38.462 0.00 0.00 36.05 3.91
368 369 6.647067 CAGCCCATACTACTACTTATCAAAGC 59.353 42.308 0.00 0.00 36.05 3.51
369 370 7.155328 CCAGCCCATACTACTACTTATCAAAG 58.845 42.308 0.00 0.00 38.77 2.77
370 371 6.042781 CCCAGCCCATACTACTACTTATCAAA 59.957 42.308 0.00 0.00 0.00 2.69
371 372 5.542635 CCCAGCCCATACTACTACTTATCAA 59.457 44.000 0.00 0.00 0.00 2.57
372 373 5.084519 CCCAGCCCATACTACTACTTATCA 58.915 45.833 0.00 0.00 0.00 2.15
374 375 3.838903 GCCCAGCCCATACTACTACTTAT 59.161 47.826 0.00 0.00 0.00 1.73
375 376 3.116862 AGCCCAGCCCATACTACTACTTA 60.117 47.826 0.00 0.00 0.00 2.24
377 378 1.220750 AGCCCAGCCCATACTACTACT 59.779 52.381 0.00 0.00 0.00 2.57
378 379 1.344763 CAGCCCAGCCCATACTACTAC 59.655 57.143 0.00 0.00 0.00 2.73
379 380 1.717032 CAGCCCAGCCCATACTACTA 58.283 55.000 0.00 0.00 0.00 1.82
380 381 1.056700 CCAGCCCAGCCCATACTACT 61.057 60.000 0.00 0.00 0.00 2.57
381 382 1.345715 ACCAGCCCAGCCCATACTAC 61.346 60.000 0.00 0.00 0.00 2.73
382 383 1.004230 ACCAGCCCAGCCCATACTA 59.996 57.895 0.00 0.00 0.00 1.82
383 384 2.286425 ACCAGCCCAGCCCATACT 60.286 61.111 0.00 0.00 0.00 2.12
386 387 2.943265 AAGACCAGCCCAGCCCAT 60.943 61.111 0.00 0.00 0.00 4.00
387 388 3.970410 CAAGACCAGCCCAGCCCA 61.970 66.667 0.00 0.00 0.00 5.36
388 389 2.988839 ATCAAGACCAGCCCAGCCC 61.989 63.158 0.00 0.00 0.00 5.19
389 390 1.751927 CATCAAGACCAGCCCAGCC 60.752 63.158 0.00 0.00 0.00 4.85
391 392 2.171237 TGTATCATCAAGACCAGCCCAG 59.829 50.000 0.00 0.00 0.00 4.45
393 394 3.498774 ATGTATCATCAAGACCAGCCC 57.501 47.619 0.00 0.00 0.00 5.19
394 395 3.817647 GGAATGTATCATCAAGACCAGCC 59.182 47.826 0.00 0.00 0.00 4.85
396 397 8.737168 TTTTAGGAATGTATCATCAAGACCAG 57.263 34.615 0.00 0.00 0.00 4.00
397 398 9.123902 CATTTTAGGAATGTATCATCAAGACCA 57.876 33.333 0.00 0.00 0.00 4.02
398 399 8.571336 CCATTTTAGGAATGTATCATCAAGACC 58.429 37.037 0.00 0.00 0.00 3.85
399 400 8.078596 GCCATTTTAGGAATGTATCATCAAGAC 58.921 37.037 0.00 0.00 0.00 3.01
400 401 8.000709 AGCCATTTTAGGAATGTATCATCAAGA 58.999 33.333 0.00 0.00 0.00 3.02
401 402 8.080417 CAGCCATTTTAGGAATGTATCATCAAG 58.920 37.037 0.00 0.00 0.00 3.02
402 403 7.014518 CCAGCCATTTTAGGAATGTATCATCAA 59.985 37.037 0.00 0.00 0.00 2.57
403 404 6.491062 CCAGCCATTTTAGGAATGTATCATCA 59.509 38.462 0.00 0.00 0.00 3.07
404 405 6.071728 CCCAGCCATTTTAGGAATGTATCATC 60.072 42.308 0.00 0.00 0.00 2.92
405 406 5.776716 CCCAGCCATTTTAGGAATGTATCAT 59.223 40.000 0.00 0.00 0.00 2.45
406 407 5.139727 CCCAGCCATTTTAGGAATGTATCA 58.860 41.667 0.00 0.00 0.00 2.15
407 408 5.010012 CACCCAGCCATTTTAGGAATGTATC 59.990 44.000 0.00 0.00 0.00 2.24
408 409 4.895297 CACCCAGCCATTTTAGGAATGTAT 59.105 41.667 0.00 0.00 0.00 2.29
409 410 4.017958 TCACCCAGCCATTTTAGGAATGTA 60.018 41.667 0.00 0.00 0.00 2.29
410 411 3.099141 CACCCAGCCATTTTAGGAATGT 58.901 45.455 0.00 0.00 0.00 2.71
411 412 3.131046 GTCACCCAGCCATTTTAGGAATG 59.869 47.826 0.00 0.00 0.00 2.67
412 413 3.011708 AGTCACCCAGCCATTTTAGGAAT 59.988 43.478 0.00 0.00 0.00 3.01
413 414 2.378547 AGTCACCCAGCCATTTTAGGAA 59.621 45.455 0.00 0.00 0.00 3.36
414 415 1.992557 AGTCACCCAGCCATTTTAGGA 59.007 47.619 0.00 0.00 0.00 2.94
415 416 2.514458 AGTCACCCAGCCATTTTAGG 57.486 50.000 0.00 0.00 0.00 2.69
416 417 3.279434 GGTAGTCACCCAGCCATTTTAG 58.721 50.000 0.00 0.00 39.11 1.85
418 419 1.427368 TGGTAGTCACCCAGCCATTTT 59.573 47.619 0.00 0.00 45.11 1.82
420 421 1.004745 CTTGGTAGTCACCCAGCCATT 59.995 52.381 0.00 0.00 45.11 3.16
421 422 0.620556 CTTGGTAGTCACCCAGCCAT 59.379 55.000 0.00 0.00 45.11 4.40
422 423 0.766674 ACTTGGTAGTCACCCAGCCA 60.767 55.000 0.00 0.00 45.11 4.75
423 424 1.066358 GTACTTGGTAGTCACCCAGCC 60.066 57.143 0.00 0.00 45.11 4.85
424 425 1.066358 GGTACTTGGTAGTCACCCAGC 60.066 57.143 0.00 0.00 45.11 4.85
425 426 2.233922 CTGGTACTTGGTAGTCACCCAG 59.766 54.545 0.00 0.00 45.11 4.45
428 429 3.306571 GGAACTGGTACTTGGTAGTCACC 60.307 52.174 0.00 0.00 46.00 4.02
429 430 3.322828 TGGAACTGGTACTTGGTAGTCAC 59.677 47.826 0.00 0.00 35.78 3.67
430 431 3.576982 CTGGAACTGGTACTTGGTAGTCA 59.423 47.826 0.00 0.00 35.78 3.41
431 432 3.056035 CCTGGAACTGGTACTTGGTAGTC 60.056 52.174 0.00 0.00 42.87 2.59
444 445 0.109342 AGTCAAGTGGCCTGGAACTG 59.891 55.000 3.32 0.00 0.00 3.16
445 446 0.398318 GAGTCAAGTGGCCTGGAACT 59.602 55.000 3.32 0.73 0.00 3.01
446 447 0.606673 GGAGTCAAGTGGCCTGGAAC 60.607 60.000 3.32 0.00 0.00 3.62
447 448 1.059584 TGGAGTCAAGTGGCCTGGAA 61.060 55.000 3.32 0.00 0.00 3.53
449 450 0.038744 AATGGAGTCAAGTGGCCTGG 59.961 55.000 3.32 0.00 0.00 4.45
450 451 1.004044 AGAATGGAGTCAAGTGGCCTG 59.996 52.381 3.32 0.00 0.00 4.85
451 452 1.004044 CAGAATGGAGTCAAGTGGCCT 59.996 52.381 3.32 0.00 0.00 5.19
452 453 1.003580 TCAGAATGGAGTCAAGTGGCC 59.996 52.381 0.00 0.00 36.16 5.36
454 455 3.332919 CAGTCAGAATGGAGTCAAGTGG 58.667 50.000 0.00 0.00 36.16 4.00
455 456 3.007290 TCCAGTCAGAATGGAGTCAAGTG 59.993 47.826 15.86 0.00 41.96 3.16
456 457 3.242867 TCCAGTCAGAATGGAGTCAAGT 58.757 45.455 15.86 0.00 41.96 3.16
457 458 3.969287 TCCAGTCAGAATGGAGTCAAG 57.031 47.619 15.86 0.00 41.96 3.02
463 464 3.054875 CCATGTCTTCCAGTCAGAATGGA 60.055 47.826 15.86 15.86 45.15 3.41
464 465 3.054875 TCCATGTCTTCCAGTCAGAATGG 60.055 47.826 10.91 10.91 39.33 3.16
466 467 3.843027 ACTCCATGTCTTCCAGTCAGAAT 59.157 43.478 0.00 0.00 0.00 2.40
467 468 3.007290 CACTCCATGTCTTCCAGTCAGAA 59.993 47.826 0.00 0.00 0.00 3.02
469 470 2.564504 TCACTCCATGTCTTCCAGTCAG 59.435 50.000 0.00 0.00 0.00 3.51
470 471 2.608623 TCACTCCATGTCTTCCAGTCA 58.391 47.619 0.00 0.00 0.00 3.41
471 472 3.685139 TTCACTCCATGTCTTCCAGTC 57.315 47.619 0.00 0.00 0.00 3.51
472 473 3.054802 GGATTCACTCCATGTCTTCCAGT 60.055 47.826 0.00 0.00 44.26 4.00
474 475 3.634397 GGATTCACTCCATGTCTTCCA 57.366 47.619 0.00 0.00 44.26 3.53
485 486 2.715046 TCACCAATGCAGGATTCACTC 58.285 47.619 0.00 0.00 0.00 3.51
486 487 2.885135 TCACCAATGCAGGATTCACT 57.115 45.000 0.00 0.00 0.00 3.41
487 488 4.037208 CCTATTCACCAATGCAGGATTCAC 59.963 45.833 0.00 0.00 0.00 3.18
489 490 3.005155 GCCTATTCACCAATGCAGGATTC 59.995 47.826 0.00 0.00 0.00 2.52
491 492 2.091720 TGCCTATTCACCAATGCAGGAT 60.092 45.455 0.00 0.00 0.00 3.24
492 493 1.284491 TGCCTATTCACCAATGCAGGA 59.716 47.619 0.00 0.00 0.00 3.86
493 494 1.766494 TGCCTATTCACCAATGCAGG 58.234 50.000 0.00 0.00 0.00 4.85
494 495 2.953648 TGATGCCTATTCACCAATGCAG 59.046 45.455 0.00 0.00 27.62 4.41
496 497 2.689471 TGTGATGCCTATTCACCAATGC 59.311 45.455 1.73 0.00 42.25 3.56
497 498 3.695556 TGTGTGATGCCTATTCACCAATG 59.304 43.478 1.73 0.00 42.25 2.82
498 499 3.949754 CTGTGTGATGCCTATTCACCAAT 59.050 43.478 1.73 0.00 42.25 3.16
500 501 2.356022 CCTGTGTGATGCCTATTCACCA 60.356 50.000 1.73 0.00 42.25 4.17
501 502 2.292267 CCTGTGTGATGCCTATTCACC 58.708 52.381 1.73 0.00 42.25 4.02
502 503 1.672881 GCCTGTGTGATGCCTATTCAC 59.327 52.381 0.00 0.00 43.04 3.18
503 504 1.408683 GGCCTGTGTGATGCCTATTCA 60.409 52.381 0.00 0.00 42.01 2.57
504 505 1.312815 GGCCTGTGTGATGCCTATTC 58.687 55.000 0.00 0.00 42.01 1.75
505 506 0.464373 CGGCCTGTGTGATGCCTATT 60.464 55.000 0.00 0.00 43.12 1.73
507 508 2.584064 CGGCCTGTGTGATGCCTA 59.416 61.111 0.00 0.00 43.12 3.93
508 509 4.415150 CCGGCCTGTGTGATGCCT 62.415 66.667 0.00 0.00 43.12 4.75
509 510 4.722700 ACCGGCCTGTGTGATGCC 62.723 66.667 0.00 0.00 41.85 4.40
511 512 3.434319 GCACCGGCCTGTGTGATG 61.434 66.667 25.78 3.39 38.52 3.07
512 513 3.640407 AGCACCGGCCTGTGTGAT 61.640 61.111 25.78 14.42 42.56 3.06
513 514 4.624364 CAGCACCGGCCTGTGTGA 62.624 66.667 25.78 0.00 42.56 3.58
528 529 1.095228 ATTAACGTCGGCCATGGCAG 61.095 55.000 36.56 32.66 44.11 4.85
529 530 0.678366 AATTAACGTCGGCCATGGCA 60.678 50.000 36.56 16.33 44.11 4.92
530 531 0.248458 CAATTAACGTCGGCCATGGC 60.248 55.000 29.47 29.47 41.06 4.40
532 533 0.588730 CGCAATTAACGTCGGCCATG 60.589 55.000 2.24 0.00 0.00 3.66
533 534 1.719117 CGCAATTAACGTCGGCCAT 59.281 52.632 2.24 0.00 0.00 4.40
534 535 3.029564 GCGCAATTAACGTCGGCCA 62.030 57.895 0.30 0.00 0.00 5.36
535 536 2.277057 GCGCAATTAACGTCGGCC 60.277 61.111 0.30 0.00 0.00 6.13
536 537 1.861715 GTGCGCAATTAACGTCGGC 60.862 57.895 14.00 0.00 0.00 5.54
537 538 1.576618 CGTGCGCAATTAACGTCGG 60.577 57.895 14.00 0.00 32.79 4.79
538 539 2.199436 GCGTGCGCAATTAACGTCG 61.199 57.895 14.00 10.42 41.49 5.12
539 540 3.645808 GCGTGCGCAATTAACGTC 58.354 55.556 14.00 3.82 41.49 4.34
549 550 4.374702 CTGTCCAACTGCGTGCGC 62.375 66.667 9.85 9.85 42.35 6.09
550 551 3.716006 CCTGTCCAACTGCGTGCG 61.716 66.667 0.00 0.00 0.00 5.34
551 552 3.357079 CCCTGTCCAACTGCGTGC 61.357 66.667 0.00 0.00 0.00 5.34
553 554 4.643387 GCCCCTGTCCAACTGCGT 62.643 66.667 0.00 0.00 0.00 5.24
555 556 3.808218 TTGGCCCCTGTCCAACTGC 62.808 63.158 0.00 0.00 38.57 4.40
556 557 2.520458 TTGGCCCCTGTCCAACTG 59.480 61.111 0.00 0.00 38.57 3.16
559 560 0.105246 AATTGTTGGCCCCTGTCCAA 60.105 50.000 0.00 0.00 40.98 3.53
560 561 0.105246 AAATTGTTGGCCCCTGTCCA 60.105 50.000 0.00 0.00 0.00 4.02
561 562 0.608130 GAAATTGTTGGCCCCTGTCC 59.392 55.000 0.00 0.00 0.00 4.02
562 563 1.546029 GAGAAATTGTTGGCCCCTGTC 59.454 52.381 0.00 0.00 0.00 3.51
563 564 1.147817 AGAGAAATTGTTGGCCCCTGT 59.852 47.619 0.00 0.00 0.00 4.00
564 565 1.821136 GAGAGAAATTGTTGGCCCCTG 59.179 52.381 0.00 0.00 0.00 4.45
565 566 1.713078 AGAGAGAAATTGTTGGCCCCT 59.287 47.619 0.00 0.00 0.00 4.79
566 567 1.821136 CAGAGAGAAATTGTTGGCCCC 59.179 52.381 0.00 0.00 0.00 5.80
567 568 2.751806 CTCAGAGAGAAATTGTTGGCCC 59.248 50.000 0.00 0.00 0.00 5.80
569 570 2.163211 GCCTCAGAGAGAAATTGTTGGC 59.837 50.000 0.00 0.00 0.00 4.52
570 571 2.751806 GGCCTCAGAGAGAAATTGTTGG 59.248 50.000 0.00 0.00 0.00 3.77
571 572 2.417933 CGGCCTCAGAGAGAAATTGTTG 59.582 50.000 0.00 0.00 0.00 3.33
572 573 2.616510 CCGGCCTCAGAGAGAAATTGTT 60.617 50.000 0.00 0.00 0.00 2.83
574 575 1.065854 ACCGGCCTCAGAGAGAAATTG 60.066 52.381 0.00 0.00 0.00 2.32
575 576 1.065854 CACCGGCCTCAGAGAGAAATT 60.066 52.381 0.00 0.00 0.00 1.82
576 577 0.539051 CACCGGCCTCAGAGAGAAAT 59.461 55.000 0.00 0.00 0.00 2.17
577 578 0.832135 ACACCGGCCTCAGAGAGAAA 60.832 55.000 0.00 0.00 0.00 2.52
578 579 0.832135 AACACCGGCCTCAGAGAGAA 60.832 55.000 0.00 0.00 0.00 2.87
579 580 1.228894 AACACCGGCCTCAGAGAGA 60.229 57.895 0.00 0.00 0.00 3.10
580 581 1.079543 CAACACCGGCCTCAGAGAG 60.080 63.158 0.00 0.00 0.00 3.20
581 582 3.059982 CAACACCGGCCTCAGAGA 58.940 61.111 0.00 0.00 0.00 3.10
582 583 2.743928 GCAACACCGGCCTCAGAG 60.744 66.667 0.00 0.00 0.00 3.35
651 655 4.585955 TGTAGAGAATAGATTCCGTGCC 57.414 45.455 0.00 0.00 37.51 5.01
705 709 8.055986 CCGTTTGCTTTAGTTTTCTGAAAATTC 58.944 33.333 17.63 7.04 32.22 2.17
719 723 0.109919 GGCGTTCCCGTTTGCTTTAG 60.110 55.000 0.00 0.00 36.15 1.85
843 862 2.354821 GGGACGCCAAGATGTTATGAAC 59.645 50.000 0.00 0.00 0.00 3.18
845 864 1.557371 TGGGACGCCAAGATGTTATGA 59.443 47.619 0.00 0.00 0.00 2.15
846 865 1.670811 GTGGGACGCCAAGATGTTATG 59.329 52.381 0.00 0.00 0.00 1.90
848 867 0.687920 TGTGGGACGCCAAGATGTTA 59.312 50.000 0.00 0.00 38.60 2.41
849 868 0.179004 TTGTGGGACGCCAAGATGTT 60.179 50.000 0.00 0.00 38.60 2.71
850 869 0.606401 CTTGTGGGACGCCAAGATGT 60.606 55.000 12.42 0.00 40.75 3.06
851 870 1.926511 GCTTGTGGGACGCCAAGATG 61.927 60.000 18.48 1.71 40.75 2.90
852 871 1.675641 GCTTGTGGGACGCCAAGAT 60.676 57.895 18.48 0.00 40.75 2.40
854 873 3.365265 GGCTTGTGGGACGCCAAG 61.365 66.667 13.07 13.07 43.25 3.61
857 876 4.947147 TGTGGCTTGTGGGACGCC 62.947 66.667 0.00 0.00 44.02 5.68
858 877 2.904866 TTGTGGCTTGTGGGACGC 60.905 61.111 0.00 0.00 40.62 5.19
859 878 1.821759 TGTTGTGGCTTGTGGGACG 60.822 57.895 0.00 0.00 0.00 4.79
860 879 1.733526 GTGTTGTGGCTTGTGGGAC 59.266 57.895 0.00 0.00 0.00 4.46
862 881 1.042559 AAGGTGTTGTGGCTTGTGGG 61.043 55.000 0.00 0.00 0.00 4.61
863 882 0.385390 GAAGGTGTTGTGGCTTGTGG 59.615 55.000 0.00 0.00 0.00 4.17
864 883 0.385390 GGAAGGTGTTGTGGCTTGTG 59.615 55.000 0.00 0.00 0.00 3.33
865 884 1.101049 CGGAAGGTGTTGTGGCTTGT 61.101 55.000 0.00 0.00 0.00 3.16
870 889 0.676782 GGGATCGGAAGGTGTTGTGG 60.677 60.000 0.00 0.00 0.00 4.17
871 890 1.019278 CGGGATCGGAAGGTGTTGTG 61.019 60.000 0.00 0.00 0.00 3.33
872 891 1.295423 CGGGATCGGAAGGTGTTGT 59.705 57.895 0.00 0.00 0.00 3.32
873 892 2.106683 GCGGGATCGGAAGGTGTTG 61.107 63.158 0.00 0.00 36.79 3.33
884 903 2.044946 AGGTTTGCCTGCGGGATC 60.045 61.111 18.31 0.00 45.05 3.36
894 913 0.389817 GGGATTTTGGCGAGGTTTGC 60.390 55.000 0.00 0.00 0.00 3.68
897 916 1.824852 GATTGGGATTTTGGCGAGGTT 59.175 47.619 0.00 0.00 0.00 3.50
930 4854 1.107538 GGGTGATGTCGATCGAGGGA 61.108 60.000 20.09 5.93 0.00 4.20
956 4880 1.065928 CGCTAGGGTTCTACTGCGG 59.934 63.158 0.00 0.00 36.86 5.69
957 4881 1.065928 CCGCTAGGGTTCTACTGCG 59.934 63.158 6.02 0.00 38.83 5.18
1090 5016 3.842923 CAGCGTCTGGCCGGAGAT 61.843 66.667 16.70 5.15 45.17 2.75
1395 5615 2.283966 AGCAGGCACCGGTACTCT 60.284 61.111 6.87 1.62 0.00 3.24
1491 5712 1.591863 GTACGCCTCCGATTCCTGC 60.592 63.158 0.00 0.00 38.29 4.85
1722 6438 1.222113 TGTGCAACAGAACCGGACA 59.778 52.632 9.46 0.00 45.67 4.02
1810 6526 4.141688 CCCCTCTGGTTCCAAGTAGTAATC 60.142 50.000 0.00 0.00 0.00 1.75
1814 6530 1.657804 CCCCTCTGGTTCCAAGTAGT 58.342 55.000 0.00 0.00 0.00 2.73
2295 12796 3.769739 ACAGAAGTACCATTGCACTCA 57.230 42.857 0.00 0.00 0.00 3.41
2297 12798 4.067896 CAGAACAGAAGTACCATTGCACT 58.932 43.478 0.00 0.00 0.00 4.40
2298 12799 3.365364 GCAGAACAGAAGTACCATTGCAC 60.365 47.826 0.00 0.00 0.00 4.57
2616 13153 4.577693 TGTATCACTCGACTAAACGCCTAT 59.422 41.667 0.00 0.00 0.00 2.57
2719 13256 1.282447 TGACAAAAATAGGGGCGGCTA 59.718 47.619 9.56 0.00 0.00 3.93
2749 13291 3.295093 TGCACAAGGAATGGAAAACTCA 58.705 40.909 0.00 0.00 0.00 3.41
2750 13292 4.051237 GTTGCACAAGGAATGGAAAACTC 58.949 43.478 0.00 0.00 0.00 3.01
2751 13293 3.706086 AGTTGCACAAGGAATGGAAAACT 59.294 39.130 0.00 0.00 0.00 2.66
2844 13409 5.868801 ACCGACAAAGCAATTTTTCATATGG 59.131 36.000 2.13 0.00 0.00 2.74
2868 13433 0.602106 GCTCAGCAGTCTTGTCAGCA 60.602 55.000 0.00 0.00 0.00 4.41
2911 13479 2.871022 CCAGTTGAGCAGCTGATACATC 59.129 50.000 20.43 10.60 41.41 3.06
2995 13572 6.623767 GCGAGAATATTGGCTCTTGTTTTTCT 60.624 38.462 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.