Multiple sequence alignment - TraesCS7D01G211100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G211100 chr7D 100.000 6345 0 0 1 6345 169392079 169385735 0.000000e+00 11718
1 TraesCS7D01G211100 chr7D 85.477 1205 162 8 3991 5191 183027056 183025861 0.000000e+00 1243
2 TraesCS7D01G211100 chr7D 86.003 593 74 7 2911 3499 183028280 183027693 1.500000e-175 627
3 TraesCS7D01G211100 chr7D 81.616 359 43 16 1273 1629 183030206 183029869 6.270000e-70 276
4 TraesCS7D01G211100 chr7A 95.308 5626 157 44 787 6345 171389627 171384042 0.000000e+00 8828
5 TraesCS7D01G211100 chr7A 84.591 1272 182 9 3991 5257 188660697 188661959 0.000000e+00 1251
6 TraesCS7D01G211100 chr7A 86.177 586 69 10 2911 3491 188659472 188660050 1.940000e-174 623
7 TraesCS7D01G211100 chr7A 90.640 203 9 5 521 721 171389807 171389613 1.750000e-65 261
8 TraesCS7D01G211100 chr7A 80.501 359 44 13 1273 1629 188657940 188658274 1.060000e-62 252
9 TraesCS7D01G211100 chr7B 95.015 3611 128 12 2783 6345 134561282 134557676 0.000000e+00 5624
10 TraesCS7D01G211100 chr7B 92.941 2295 90 42 521 2784 134563587 134561334 0.000000e+00 3275
11 TraesCS7D01G211100 chr7B 84.688 1280 188 8 3990 5266 151430469 151429195 0.000000e+00 1271
12 TraesCS7D01G211100 chr7B 85.616 584 78 6 2911 3491 151431735 151431155 5.440000e-170 608
13 TraesCS7D01G211100 chr7B 81.006 358 47 11 1273 1629 151433435 151433098 1.360000e-66 265
14 TraesCS7D01G211100 chr6A 87.429 175 20 2 1451 1624 522641405 522641232 3.880000e-47 200
15 TraesCS7D01G211100 chr6B 85.714 189 23 3 1437 1624 569820924 569821109 5.020000e-46 196
16 TraesCS7D01G211100 chr6D 86.857 175 21 2 1451 1624 381369286 381369113 1.800000e-45 195
17 TraesCS7D01G211100 chr4B 77.604 192 37 4 3570 3756 529405167 529405357 1.870000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G211100 chr7D 169385735 169392079 6344 True 11718.000000 11718 100.000000 1 6345 1 chr7D.!!$R1 6344
1 TraesCS7D01G211100 chr7D 183025861 183030206 4345 True 715.333333 1243 84.365333 1273 5191 3 chr7D.!!$R2 3918
2 TraesCS7D01G211100 chr7A 171384042 171389807 5765 True 4544.500000 8828 92.974000 521 6345 2 chr7A.!!$R1 5824
3 TraesCS7D01G211100 chr7A 188657940 188661959 4019 False 708.666667 1251 83.756333 1273 5257 3 chr7A.!!$F1 3984
4 TraesCS7D01G211100 chr7B 134557676 134563587 5911 True 4449.500000 5624 93.978000 521 6345 2 chr7B.!!$R1 5824
5 TraesCS7D01G211100 chr7B 151429195 151433435 4240 True 714.666667 1271 83.770000 1273 5266 3 chr7B.!!$R2 3993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.183971 TCGGAACCAAGAGCCCAAAA 59.816 50.000 0.00 0.0 0.00 2.44 F
345 346 0.318120 AAATTTGTTGGCGAGGGCAG 59.682 50.000 0.00 0.0 42.47 4.85 F
497 498 0.340208 GGAGGGAGAGAGGGGAGAAA 59.660 60.000 0.00 0.0 0.00 2.52 F
499 500 0.341609 AGGGAGAGAGGGGAGAAAGG 59.658 60.000 0.00 0.0 0.00 3.11 F
500 501 0.340208 GGGAGAGAGGGGAGAAAGGA 59.660 60.000 0.00 0.0 0.00 3.36 F
506 507 0.698818 GAGGGGAGAAAGGAAAGCCA 59.301 55.000 0.00 0.0 36.29 4.75 F
2497 3222 0.877071 ATGTTGCTTGCTGGTCTTCG 59.123 50.000 0.00 0.0 0.00 3.79 F
2752 3493 2.685850 ACCCTTCATTGTAGTACCGC 57.314 50.000 0.00 0.0 0.00 5.68 F
3825 5286 4.935352 TTGCTTAACTGTGCCAGAAAAT 57.065 36.364 8.91 0.0 35.18 1.82 F
4254 5716 2.526304 TCTGACTCGGTCCTTTTGTG 57.474 50.000 2.23 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 1969 1.134401 TCCTCAAATCTAAGCCTGCCG 60.134 52.381 0.00 0.00 0.00 5.69 R
2046 2097 2.079925 GGTCAATTGACAGGAGCTGAC 58.920 52.381 33.42 13.82 46.47 3.51 R
2196 2874 3.622455 GCCCAGAGCCTAAACAATACAGT 60.622 47.826 0.00 0.00 34.35 3.55 R
2497 3222 8.996271 TGACTTCTGCATCACAATGATATTATC 58.004 33.333 0.00 0.00 34.28 1.75 R
2546 3271 7.920151 CCATGAAGCCAACGATATAAAATTCAA 59.080 33.333 0.00 0.00 0.00 2.69 R
2752 3493 5.179929 TGTGCATCTGTGTGAATTCTACAAG 59.820 40.000 7.05 9.32 0.00 3.16 R
3962 5423 0.821711 TAAAGCCCGCACTTTGCTGT 60.822 50.000 10.21 0.00 42.25 4.40 R
4254 5716 2.416893 GCAAAACCTAGCTAGAGCACAC 59.583 50.000 22.70 3.85 45.16 3.82 R
5079 6544 0.326264 CCTCCACAGGGTCCTTGAAG 59.674 60.000 8.21 2.37 35.89 3.02 R
5677 7170 1.107945 TGGAATATCGCGTGGAGACA 58.892 50.000 5.77 0.00 38.70 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.280524 TCACCAGCGAACCAACGG 60.281 61.111 0.00 0.00 0.00 4.44
18 19 2.280524 CACCAGCGAACCAACGGA 60.281 61.111 0.00 0.00 0.00 4.69
19 20 2.280592 ACCAGCGAACCAACGGAC 60.281 61.111 0.00 0.00 0.00 4.79
20 21 3.411351 CCAGCGAACCAACGGACG 61.411 66.667 0.00 0.00 0.00 4.79
21 22 3.411351 CAGCGAACCAACGGACGG 61.411 66.667 0.00 0.00 0.00 4.79
22 23 3.608662 AGCGAACCAACGGACGGA 61.609 61.111 0.00 0.00 0.00 4.69
23 24 3.110178 GCGAACCAACGGACGGAG 61.110 66.667 0.00 0.00 0.00 4.63
24 25 3.110178 CGAACCAACGGACGGAGC 61.110 66.667 0.00 0.00 0.00 4.70
25 26 2.029964 GAACCAACGGACGGAGCA 59.970 61.111 0.00 0.00 0.00 4.26
26 27 2.280592 AACCAACGGACGGAGCAC 60.281 61.111 0.00 0.00 0.00 4.40
27 28 2.981977 GAACCAACGGACGGAGCACA 62.982 60.000 0.00 0.00 0.00 4.57
28 29 2.738521 CCAACGGACGGAGCACAG 60.739 66.667 0.00 0.00 0.00 3.66
29 30 2.338620 CAACGGACGGAGCACAGA 59.661 61.111 0.00 0.00 0.00 3.41
30 31 2.022129 CAACGGACGGAGCACAGAC 61.022 63.158 0.00 0.00 0.00 3.51
31 32 3.553437 AACGGACGGAGCACAGACG 62.553 63.158 0.00 0.00 0.00 4.18
32 33 4.778415 CGGACGGAGCACAGACGG 62.778 72.222 0.00 0.00 0.00 4.79
33 34 4.436998 GGACGGAGCACAGACGGG 62.437 72.222 0.00 0.00 0.00 5.28
34 35 4.436998 GACGGAGCACAGACGGGG 62.437 72.222 0.00 0.00 0.00 5.73
37 38 3.775654 GGAGCACAGACGGGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
38 39 3.775654 GAGCACAGACGGGGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
39 40 4.640690 AGCACAGACGGGGGAGGT 62.641 66.667 0.00 0.00 0.00 3.85
40 41 2.682494 GCACAGACGGGGGAGGTA 60.682 66.667 0.00 0.00 0.00 3.08
41 42 2.722201 GCACAGACGGGGGAGGTAG 61.722 68.421 0.00 0.00 0.00 3.18
42 43 2.363925 ACAGACGGGGGAGGTAGC 60.364 66.667 0.00 0.00 0.00 3.58
43 44 3.155167 CAGACGGGGGAGGTAGCC 61.155 72.222 0.00 0.00 0.00 3.93
44 45 4.835891 AGACGGGGGAGGTAGCCG 62.836 72.222 0.00 0.00 0.00 5.52
48 49 4.153330 GGGGGAGGTAGCCGGAGA 62.153 72.222 5.05 0.00 0.00 3.71
49 50 2.522193 GGGGAGGTAGCCGGAGAG 60.522 72.222 5.05 0.00 0.00 3.20
50 51 2.522193 GGGAGGTAGCCGGAGAGG 60.522 72.222 5.05 0.00 44.97 3.69
51 52 2.601868 GGAGGTAGCCGGAGAGGA 59.398 66.667 5.05 0.00 45.00 3.71
52 53 1.529713 GGAGGTAGCCGGAGAGGAG 60.530 68.421 5.05 0.00 45.00 3.69
53 54 1.529713 GAGGTAGCCGGAGAGGAGG 60.530 68.421 5.05 0.00 45.00 4.30
54 55 2.522193 GGTAGCCGGAGAGGAGGG 60.522 72.222 5.05 0.00 45.00 4.30
55 56 2.522193 GTAGCCGGAGAGGAGGGG 60.522 72.222 5.05 0.00 45.00 4.79
56 57 3.834056 TAGCCGGAGAGGAGGGGG 61.834 72.222 5.05 0.00 45.00 5.40
58 59 4.798682 GCCGGAGAGGAGGGGGAA 62.799 72.222 5.05 0.00 45.00 3.97
59 60 2.040606 CCGGAGAGGAGGGGGAAA 59.959 66.667 0.00 0.00 45.00 3.13
60 61 1.384643 CCGGAGAGGAGGGGGAAAT 60.385 63.158 0.00 0.00 45.00 2.17
61 62 1.411651 CCGGAGAGGAGGGGGAAATC 61.412 65.000 0.00 0.00 45.00 2.17
62 63 0.691078 CGGAGAGGAGGGGGAAATCA 60.691 60.000 0.00 0.00 0.00 2.57
63 64 1.135960 GGAGAGGAGGGGGAAATCAG 58.864 60.000 0.00 0.00 0.00 2.90
64 65 1.135960 GAGAGGAGGGGGAAATCAGG 58.864 60.000 0.00 0.00 0.00 3.86
65 66 0.423544 AGAGGAGGGGGAAATCAGGT 59.576 55.000 0.00 0.00 0.00 4.00
66 67 0.840617 GAGGAGGGGGAAATCAGGTC 59.159 60.000 0.00 0.00 0.00 3.85
67 68 0.624795 AGGAGGGGGAAATCAGGTCC 60.625 60.000 0.00 0.00 0.00 4.46
68 69 1.527370 GAGGGGGAAATCAGGTCCG 59.473 63.158 0.00 0.00 35.86 4.79
69 70 0.981277 GAGGGGGAAATCAGGTCCGA 60.981 60.000 0.00 0.00 35.86 4.55
70 71 1.223763 GGGGGAAATCAGGTCCGAC 59.776 63.158 0.00 0.00 35.86 4.79
71 72 1.153429 GGGGAAATCAGGTCCGACG 60.153 63.158 0.00 0.00 35.86 5.12
72 73 1.814169 GGGAAATCAGGTCCGACGC 60.814 63.158 0.00 0.00 35.86 5.19
73 74 1.814169 GGAAATCAGGTCCGACGCC 60.814 63.158 0.00 0.00 0.00 5.68
74 75 2.125673 AAATCAGGTCCGACGCCG 60.126 61.111 0.00 0.00 0.00 6.46
85 86 4.218478 GACGCCGGCGCAATACAC 62.218 66.667 46.22 24.26 44.19 2.90
92 93 3.876198 GCGCAATACACCGCCCAG 61.876 66.667 0.30 0.00 44.10 4.45
94 95 3.518068 GCAATACACCGCCCAGGC 61.518 66.667 0.00 0.00 46.52 4.85
95 96 2.828549 CAATACACCGCCCAGGCC 60.829 66.667 2.37 0.00 46.52 5.19
96 97 4.123545 AATACACCGCCCAGGCCC 62.124 66.667 0.00 0.00 46.52 5.80
103 104 3.488569 CGCCCAGGCCCAAGGATA 61.489 66.667 0.00 0.00 37.98 2.59
104 105 2.195956 GCCCAGGCCCAAGGATAC 59.804 66.667 0.00 0.00 34.56 2.24
105 106 2.927056 CCCAGGCCCAAGGATACC 59.073 66.667 0.00 0.00 37.17 2.73
106 107 2.006415 CCCAGGCCCAAGGATACCA 61.006 63.158 0.00 0.00 37.17 3.25
107 108 1.227383 CCAGGCCCAAGGATACCAC 59.773 63.158 0.00 0.00 37.17 4.16
108 109 1.153168 CAGGCCCAAGGATACCACG 60.153 63.158 0.00 0.00 37.17 4.94
109 110 2.192175 GGCCCAAGGATACCACGG 59.808 66.667 0.00 0.00 37.17 4.94
110 111 2.192175 GCCCAAGGATACCACGGG 59.808 66.667 9.32 9.32 39.41 5.28
111 112 2.192175 CCCAAGGATACCACGGGC 59.808 66.667 0.00 0.00 31.92 6.13
112 113 2.675242 CCCAAGGATACCACGGGCA 61.675 63.158 0.00 0.00 31.92 5.36
113 114 1.153168 CCAAGGATACCACGGGCAG 60.153 63.158 0.00 0.00 37.17 4.85
114 115 1.153168 CAAGGATACCACGGGCAGG 60.153 63.158 0.00 0.00 37.17 4.85
115 116 2.375345 AAGGATACCACGGGCAGGG 61.375 63.158 0.00 0.00 37.17 4.45
128 129 2.678934 CAGGGGACGTCGGAGGAA 60.679 66.667 9.92 0.00 0.00 3.36
129 130 2.679287 AGGGGACGTCGGAGGAAC 60.679 66.667 9.92 0.00 0.00 3.62
130 131 3.767806 GGGGACGTCGGAGGAACC 61.768 72.222 9.92 2.69 0.00 3.62
131 132 3.767806 GGGACGTCGGAGGAACCC 61.768 72.222 9.92 16.52 34.64 4.11
132 133 2.679287 GGACGTCGGAGGAACCCT 60.679 66.667 9.92 0.00 36.03 4.34
133 134 1.379044 GGACGTCGGAGGAACCCTA 60.379 63.158 9.92 0.00 31.76 3.53
134 135 1.661498 GGACGTCGGAGGAACCCTAC 61.661 65.000 9.92 0.00 31.76 3.18
139 140 4.525949 GGAGGAACCCTACGGCGC 62.526 72.222 6.90 0.00 31.76 6.53
140 141 4.525949 GAGGAACCCTACGGCGCC 62.526 72.222 19.07 19.07 31.76 6.53
142 143 4.832608 GGAACCCTACGGCGCCTG 62.833 72.222 26.68 20.24 0.00 4.85
148 149 4.914420 CTACGGCGCCTGCGAGAG 62.914 72.222 26.68 9.51 44.10 3.20
217 218 4.745751 CCACCGGGCGCGAACTTA 62.746 66.667 26.13 0.00 0.00 2.24
218 219 3.484547 CACCGGGCGCGAACTTAC 61.485 66.667 26.13 0.00 0.00 2.34
220 221 4.781959 CCGGGCGCGAACTTACGA 62.782 66.667 26.13 0.00 35.09 3.43
221 222 3.539107 CGGGCGCGAACTTACGAC 61.539 66.667 19.65 0.00 36.28 4.34
222 223 2.431260 GGGCGCGAACTTACGACA 60.431 61.111 12.10 0.00 39.73 4.35
223 224 2.723719 GGGCGCGAACTTACGACAC 61.724 63.158 12.10 0.00 39.73 3.67
224 225 2.723719 GGCGCGAACTTACGACACC 61.724 63.158 12.10 0.00 37.24 4.16
225 226 3.051171 GCGCGAACTTACGACACCG 62.051 63.158 12.10 0.00 42.50 4.94
226 227 2.767697 GCGAACTTACGACACCGC 59.232 61.111 0.00 0.00 39.95 5.68
227 228 3.051171 GCGAACTTACGACACCGCG 62.051 63.158 0.00 0.00 39.95 6.46
228 229 2.767697 GAACTTACGACACCGCGC 59.232 61.111 0.00 0.00 39.95 6.86
229 230 1.731969 GAACTTACGACACCGCGCT 60.732 57.895 5.56 0.00 39.95 5.92
230 231 1.941476 GAACTTACGACACCGCGCTG 61.941 60.000 5.56 0.00 39.95 5.18
231 232 3.179265 CTTACGACACCGCGCTGG 61.179 66.667 15.25 15.25 46.41 4.85
232 233 3.620300 CTTACGACACCGCGCTGGA 62.620 63.158 22.10 0.00 42.00 3.86
233 234 3.620300 TTACGACACCGCGCTGGAG 62.620 63.158 22.10 17.10 42.00 3.86
239 240 4.314440 ACCGCGCTGGAGCAGAAA 62.314 61.111 22.10 0.00 42.00 2.52
240 241 3.793144 CCGCGCTGGAGCAGAAAC 61.793 66.667 12.11 0.00 42.00 2.78
241 242 4.139420 CGCGCTGGAGCAGAAACG 62.139 66.667 5.56 0.00 42.21 3.60
242 243 2.738521 GCGCTGGAGCAGAAACGA 60.739 61.111 0.00 0.00 42.21 3.85
243 244 3.016474 GCGCTGGAGCAGAAACGAC 62.016 63.158 0.00 0.00 42.21 4.34
244 245 2.720758 CGCTGGAGCAGAAACGACG 61.721 63.158 0.00 0.00 42.21 5.12
245 246 2.383527 GCTGGAGCAGAAACGACGG 61.384 63.158 0.00 0.00 41.59 4.79
246 247 1.738099 CTGGAGCAGAAACGACGGG 60.738 63.158 0.00 0.00 32.44 5.28
247 248 3.119096 GGAGCAGAAACGACGGGC 61.119 66.667 0.00 0.00 0.00 6.13
248 249 2.357034 GAGCAGAAACGACGGGCA 60.357 61.111 0.00 0.00 0.00 5.36
249 250 2.357517 AGCAGAAACGACGGGCAG 60.358 61.111 0.00 0.00 0.00 4.85
250 251 3.423154 GCAGAAACGACGGGCAGG 61.423 66.667 0.00 0.00 0.00 4.85
251 252 3.423154 CAGAAACGACGGGCAGGC 61.423 66.667 0.00 0.00 0.00 4.85
252 253 3.936203 AGAAACGACGGGCAGGCA 61.936 61.111 0.00 0.00 0.00 4.75
253 254 3.423154 GAAACGACGGGCAGGCAG 61.423 66.667 0.00 0.00 0.00 4.85
288 289 4.138815 GGGAGGGGGAGGGGGAAT 62.139 72.222 0.00 0.00 0.00 3.01
289 290 2.450699 GGAGGGGGAGGGGGAATC 60.451 72.222 0.00 0.00 0.00 2.52
290 291 2.849646 GAGGGGGAGGGGGAATCG 60.850 72.222 0.00 0.00 0.00 3.34
291 292 4.516326 AGGGGGAGGGGGAATCGG 62.516 72.222 0.00 0.00 0.00 4.18
292 293 4.509412 GGGGGAGGGGGAATCGGA 62.509 72.222 0.00 0.00 0.00 4.55
293 294 2.849646 GGGGAGGGGGAATCGGAG 60.850 72.222 0.00 0.00 0.00 4.63
294 295 2.040779 GGGAGGGGGAATCGGAGT 60.041 66.667 0.00 0.00 0.00 3.85
295 296 2.141448 GGGAGGGGGAATCGGAGTC 61.141 68.421 0.00 0.00 0.00 3.36
296 297 2.499827 GGAGGGGGAATCGGAGTCG 61.500 68.421 0.00 0.00 37.82 4.18
297 298 2.444140 AGGGGGAATCGGAGTCGG 60.444 66.667 0.00 0.00 36.95 4.79
298 299 2.443390 GGGGGAATCGGAGTCGGA 60.443 66.667 2.53 2.53 36.95 4.55
299 300 2.499827 GGGGGAATCGGAGTCGGAG 61.500 68.421 6.55 0.00 36.95 4.63
300 301 1.757340 GGGGAATCGGAGTCGGAGT 60.757 63.158 6.55 3.36 36.95 3.85
301 302 1.734748 GGGAATCGGAGTCGGAGTC 59.265 63.158 17.06 17.06 36.95 3.36
302 303 1.734748 GGAATCGGAGTCGGAGTCC 59.265 63.158 25.33 25.33 36.95 3.85
319 320 3.876300 CGAAGCCTCGGAACCAAG 58.124 61.111 0.00 0.00 41.57 3.61
320 321 1.292223 CGAAGCCTCGGAACCAAGA 59.708 57.895 0.00 0.00 41.57 3.02
321 322 0.737715 CGAAGCCTCGGAACCAAGAG 60.738 60.000 0.00 0.00 41.57 2.85
322 323 1.003233 AAGCCTCGGAACCAAGAGC 60.003 57.895 0.00 0.00 33.39 4.09
323 324 2.436824 GCCTCGGAACCAAGAGCC 60.437 66.667 0.00 0.00 33.39 4.70
324 325 2.269241 CCTCGGAACCAAGAGCCC 59.731 66.667 0.00 0.00 33.39 5.19
325 326 2.592993 CCTCGGAACCAAGAGCCCA 61.593 63.158 0.00 0.00 33.39 5.36
326 327 1.374947 CTCGGAACCAAGAGCCCAA 59.625 57.895 0.00 0.00 0.00 4.12
327 328 0.250727 CTCGGAACCAAGAGCCCAAA 60.251 55.000 0.00 0.00 0.00 3.28
328 329 0.183971 TCGGAACCAAGAGCCCAAAA 59.816 50.000 0.00 0.00 0.00 2.44
329 330 1.203001 TCGGAACCAAGAGCCCAAAAT 60.203 47.619 0.00 0.00 0.00 1.82
330 331 1.618343 CGGAACCAAGAGCCCAAAATT 59.382 47.619 0.00 0.00 0.00 1.82
331 332 2.037121 CGGAACCAAGAGCCCAAAATTT 59.963 45.455 0.00 0.00 0.00 1.82
332 333 3.402110 GGAACCAAGAGCCCAAAATTTG 58.598 45.455 0.00 0.00 0.00 2.32
333 334 3.181455 GGAACCAAGAGCCCAAAATTTGT 60.181 43.478 4.92 0.00 0.00 2.83
334 335 4.450976 GAACCAAGAGCCCAAAATTTGTT 58.549 39.130 4.92 0.00 0.00 2.83
335 336 3.807553 ACCAAGAGCCCAAAATTTGTTG 58.192 40.909 4.92 2.52 0.00 3.33
336 337 3.140623 CCAAGAGCCCAAAATTTGTTGG 58.859 45.455 9.59 9.59 46.57 3.77
337 338 2.549064 AGAGCCCAAAATTTGTTGGC 57.451 45.000 15.23 15.23 45.80 4.52
338 339 1.147473 GAGCCCAAAATTTGTTGGCG 58.853 50.000 16.45 6.62 45.80 5.69
339 340 0.755686 AGCCCAAAATTTGTTGGCGA 59.244 45.000 16.45 0.00 45.80 5.54
340 341 1.147473 GCCCAAAATTTGTTGGCGAG 58.853 50.000 9.58 0.00 45.80 5.03
341 342 1.794512 CCCAAAATTTGTTGGCGAGG 58.205 50.000 4.92 0.00 45.80 4.63
342 343 1.607767 CCCAAAATTTGTTGGCGAGGG 60.608 52.381 4.92 0.00 45.80 4.30
343 344 1.147473 CAAAATTTGTTGGCGAGGGC 58.853 50.000 0.00 0.00 38.90 5.19
344 345 0.755686 AAAATTTGTTGGCGAGGGCA 59.244 45.000 0.00 0.00 42.47 5.36
345 346 0.318120 AAATTTGTTGGCGAGGGCAG 59.682 50.000 0.00 0.00 42.47 4.85
346 347 1.535204 AATTTGTTGGCGAGGGCAGG 61.535 55.000 0.00 0.00 42.47 4.85
347 348 2.424842 ATTTGTTGGCGAGGGCAGGA 62.425 55.000 0.00 0.00 42.47 3.86
348 349 3.551496 TTGTTGGCGAGGGCAGGAG 62.551 63.158 0.00 0.00 42.47 3.69
357 358 4.087892 GGGCAGGAGCTCGAAGCA 62.088 66.667 20.46 0.00 45.56 3.91
358 359 2.817396 GGCAGGAGCTCGAAGCAC 60.817 66.667 20.46 9.83 45.56 4.40
359 360 2.047844 GCAGGAGCTCGAAGCACA 60.048 61.111 15.93 0.00 45.56 4.57
360 361 2.099431 GCAGGAGCTCGAAGCACAG 61.099 63.158 15.93 0.00 45.56 3.66
361 362 1.588597 CAGGAGCTCGAAGCACAGA 59.411 57.895 7.83 0.00 45.56 3.41
362 363 0.458197 CAGGAGCTCGAAGCACAGAG 60.458 60.000 7.83 0.00 45.56 3.35
372 373 2.125753 GCACAGAGCGAGGAGTGG 60.126 66.667 0.00 0.00 32.80 4.00
373 374 2.640302 GCACAGAGCGAGGAGTGGA 61.640 63.158 0.00 0.00 32.80 4.02
374 375 1.214062 CACAGAGCGAGGAGTGGAC 59.786 63.158 0.00 0.00 0.00 4.02
375 376 2.336478 ACAGAGCGAGGAGTGGACG 61.336 63.158 0.00 0.00 0.00 4.79
376 377 2.041115 CAGAGCGAGGAGTGGACGA 61.041 63.158 0.00 0.00 0.00 4.20
377 378 2.041686 AGAGCGAGGAGTGGACGAC 61.042 63.158 0.00 0.00 0.00 4.34
378 379 3.384014 GAGCGAGGAGTGGACGACG 62.384 68.421 0.00 0.00 0.00 5.12
379 380 4.477975 GCGAGGAGTGGACGACGG 62.478 72.222 0.00 0.00 0.00 4.79
380 381 3.812019 CGAGGAGTGGACGACGGG 61.812 72.222 0.00 0.00 0.00 5.28
381 382 3.450115 GAGGAGTGGACGACGGGG 61.450 72.222 0.00 0.00 0.00 5.73
382 383 3.933048 GAGGAGTGGACGACGGGGA 62.933 68.421 0.00 0.00 0.00 4.81
383 384 3.450115 GGAGTGGACGACGGGGAG 61.450 72.222 0.00 0.00 0.00 4.30
384 385 3.450115 GAGTGGACGACGGGGAGG 61.450 72.222 0.00 0.00 0.00 4.30
385 386 3.933048 GAGTGGACGACGGGGAGGA 62.933 68.421 0.00 0.00 0.00 3.71
386 387 3.450115 GTGGACGACGGGGAGGAG 61.450 72.222 0.00 0.00 0.00 3.69
387 388 3.654143 TGGACGACGGGGAGGAGA 61.654 66.667 0.00 0.00 0.00 3.71
388 389 3.139469 GGACGACGGGGAGGAGAC 61.139 72.222 0.00 0.00 0.00 3.36
390 391 2.361357 ACGACGGGGAGGAGACTG 60.361 66.667 0.00 0.00 44.43 3.51
391 392 3.141488 CGACGGGGAGGAGACTGG 61.141 72.222 0.00 0.00 44.43 4.00
392 393 2.760385 GACGGGGAGGAGACTGGG 60.760 72.222 0.00 0.00 44.43 4.45
393 394 4.400251 ACGGGGAGGAGACTGGGG 62.400 72.222 0.00 0.00 44.43 4.96
394 395 4.075793 CGGGGAGGAGACTGGGGA 62.076 72.222 0.00 0.00 44.43 4.81
395 396 2.365768 GGGGAGGAGACTGGGGAC 60.366 72.222 0.00 0.00 44.43 4.46
396 397 2.760385 GGGAGGAGACTGGGGACG 60.760 72.222 0.00 0.00 44.43 4.79
397 398 2.359404 GGAGGAGACTGGGGACGA 59.641 66.667 0.00 0.00 44.43 4.20
398 399 1.755008 GGAGGAGACTGGGGACGAG 60.755 68.421 0.00 0.00 44.43 4.18
399 400 1.303615 GAGGAGACTGGGGACGAGA 59.696 63.158 0.00 0.00 44.43 4.04
400 401 1.000646 AGGAGACTGGGGACGAGAC 60.001 63.158 0.00 0.00 41.13 3.36
401 402 1.000646 GGAGACTGGGGACGAGACT 60.001 63.158 0.00 0.00 0.00 3.24
402 403 1.316706 GGAGACTGGGGACGAGACTG 61.317 65.000 0.00 0.00 0.00 3.51
403 404 1.939769 GAGACTGGGGACGAGACTGC 61.940 65.000 0.00 0.00 0.00 4.40
404 405 3.343788 GACTGGGGACGAGACTGCG 62.344 68.421 0.00 0.00 37.29 5.18
405 406 4.803426 CTGGGGACGAGACTGCGC 62.803 72.222 0.00 0.00 33.86 6.09
409 410 4.838486 GGACGAGACTGCGCGGAG 62.838 72.222 26.95 26.95 41.84 4.63
410 411 4.838486 GACGAGACTGCGCGGAGG 62.838 72.222 31.29 15.85 41.84 4.30
487 488 4.548513 CGGGAGGGGGAGGGAGAG 62.549 77.778 0.00 0.00 0.00 3.20
488 489 3.036959 GGGAGGGGGAGGGAGAGA 61.037 72.222 0.00 0.00 0.00 3.10
489 490 2.612251 GGAGGGGGAGGGAGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
490 491 2.612251 GAGGGGGAGGGAGAGAGG 59.388 72.222 0.00 0.00 0.00 3.69
491 492 3.039526 AGGGGGAGGGAGAGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
492 493 4.179599 GGGGGAGGGAGAGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
493 494 3.036959 GGGGAGGGAGAGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
494 495 2.612251 GGGAGGGAGAGAGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
495 496 2.015726 GGGAGGGAGAGAGGGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
496 497 1.595058 GGGAGGGAGAGAGGGGAGAA 61.595 65.000 0.00 0.00 0.00 2.87
497 498 0.340208 GGAGGGAGAGAGGGGAGAAA 59.660 60.000 0.00 0.00 0.00 2.52
498 499 1.691163 GGAGGGAGAGAGGGGAGAAAG 60.691 61.905 0.00 0.00 0.00 2.62
499 500 0.341609 AGGGAGAGAGGGGAGAAAGG 59.658 60.000 0.00 0.00 0.00 3.11
500 501 0.340208 GGGAGAGAGGGGAGAAAGGA 59.660 60.000 0.00 0.00 0.00 3.36
501 502 1.273896 GGGAGAGAGGGGAGAAAGGAA 60.274 57.143 0.00 0.00 0.00 3.36
502 503 2.552367 GGAGAGAGGGGAGAAAGGAAA 58.448 52.381 0.00 0.00 0.00 3.13
503 504 2.503765 GGAGAGAGGGGAGAAAGGAAAG 59.496 54.545 0.00 0.00 0.00 2.62
504 505 1.912731 AGAGAGGGGAGAAAGGAAAGC 59.087 52.381 0.00 0.00 0.00 3.51
505 506 0.995803 AGAGGGGAGAAAGGAAAGCC 59.004 55.000 0.00 0.00 0.00 4.35
506 507 0.698818 GAGGGGAGAAAGGAAAGCCA 59.301 55.000 0.00 0.00 36.29 4.75
507 508 1.286257 GAGGGGAGAAAGGAAAGCCAT 59.714 52.381 0.00 0.00 36.29 4.40
508 509 1.286257 AGGGGAGAAAGGAAAGCCATC 59.714 52.381 0.00 0.00 36.29 3.51
509 510 1.286257 GGGGAGAAAGGAAAGCCATCT 59.714 52.381 0.00 0.00 35.90 2.90
510 511 2.373224 GGGAGAAAGGAAAGCCATCTG 58.627 52.381 0.00 0.00 34.08 2.90
511 512 1.747924 GGAGAAAGGAAAGCCATCTGC 59.252 52.381 0.00 0.00 41.71 4.26
512 513 2.440409 GAGAAAGGAAAGCCATCTGCA 58.560 47.619 0.00 0.00 44.83 4.41
513 514 2.821969 GAGAAAGGAAAGCCATCTGCAA 59.178 45.455 0.00 0.00 44.83 4.08
514 515 2.560105 AGAAAGGAAAGCCATCTGCAAC 59.440 45.455 0.00 0.00 44.83 4.17
515 516 0.883833 AAGGAAAGCCATCTGCAACG 59.116 50.000 0.00 0.00 44.83 4.10
516 517 0.962356 AGGAAAGCCATCTGCAACGG 60.962 55.000 0.00 0.00 44.83 4.44
517 518 1.508088 GAAAGCCATCTGCAACGGG 59.492 57.895 0.00 0.00 44.83 5.28
518 519 0.960364 GAAAGCCATCTGCAACGGGA 60.960 55.000 1.62 0.00 44.83 5.14
519 520 1.244019 AAAGCCATCTGCAACGGGAC 61.244 55.000 1.62 0.00 44.83 4.46
764 778 3.987868 TGAACTAGTAGCAACGAAGCAAG 59.012 43.478 0.00 1.80 36.85 4.01
773 787 3.057946 AGCAACGAAGCAAGAATTCTTCC 60.058 43.478 17.91 9.53 36.29 3.46
784 798 5.970023 GCAAGAATTCTTCCGATCATCTTTG 59.030 40.000 17.91 4.32 33.11 2.77
789 803 8.796475 AGAATTCTTCCGATCATCTTTGAAAAA 58.204 29.630 0.88 0.00 34.96 1.94
1170 1208 1.024579 CACCCTGAAATCCGAACCCG 61.025 60.000 0.00 0.00 0.00 5.28
1200 1238 2.124942 GCCCTCCTTCCAGAAGCG 60.125 66.667 1.68 0.00 37.11 4.68
1201 1239 2.660064 GCCCTCCTTCCAGAAGCGA 61.660 63.158 1.68 1.08 37.11 4.93
1202 1240 1.519719 CCCTCCTTCCAGAAGCGAG 59.480 63.158 14.21 14.21 37.11 5.03
1203 1241 1.153469 CCTCCTTCCAGAAGCGAGC 60.153 63.158 15.11 0.00 35.89 5.03
1204 1242 1.518133 CTCCTTCCAGAAGCGAGCG 60.518 63.158 1.68 0.00 37.11 5.03
1734 1778 4.038042 GGGGAAAACTCCTTGACTTTCTTG 59.962 45.833 0.00 0.00 0.00 3.02
1871 1921 2.378445 TTCCGTGCGATTCTGATCAA 57.622 45.000 0.00 0.00 32.33 2.57
1872 1922 1.926561 TCCGTGCGATTCTGATCAAG 58.073 50.000 0.00 0.00 32.33 3.02
1886 1936 4.141233 TGATCAAGATTTGCGGATCAGA 57.859 40.909 0.00 0.88 40.71 3.27
1892 1942 4.691860 AGATTTGCGGATCAGAAAGTTG 57.308 40.909 0.00 0.00 0.00 3.16
1919 1969 1.568025 GTGAAGAACACGCGAACCC 59.432 57.895 15.93 0.00 39.78 4.11
2046 2097 4.083802 GGACACAGAGAATTTTGTCTTCCG 60.084 45.833 0.00 0.00 38.73 4.30
2116 2167 2.279136 GTGCACGCTACTATCGAAACTG 59.721 50.000 0.00 0.00 0.00 3.16
2134 2191 4.744795 ACTGGAGATGGACTTGTGATAC 57.255 45.455 0.00 0.00 0.00 2.24
2196 2874 3.018856 TCGCCGGTAGATTCTGTCTTTA 58.981 45.455 1.90 0.00 38.42 1.85
2407 3119 9.793252 ACATATGACTAAAGAAATGAATGTTGC 57.207 29.630 10.38 0.00 0.00 4.17
2497 3222 0.877071 ATGTTGCTTGCTGGTCTTCG 59.123 50.000 0.00 0.00 0.00 3.79
2752 3493 2.685850 ACCCTTCATTGTAGTACCGC 57.314 50.000 0.00 0.00 0.00 5.68
2761 3502 6.216801 TCATTGTAGTACCGCTTGTAGAAT 57.783 37.500 0.00 0.00 0.00 2.40
3515 4974 8.668353 CACAGTATTTGTCAACTATACATTGCT 58.332 33.333 9.17 0.00 38.16 3.91
3825 5286 4.935352 TTGCTTAACTGTGCCAGAAAAT 57.065 36.364 8.91 0.00 35.18 1.82
3867 5328 5.984926 ACATTTCAGTTGGTTTATGCACTTG 59.015 36.000 0.00 0.00 0.00 3.16
3886 5347 6.717413 CACTTGAACAACATTTGGATTTTGG 58.283 36.000 0.00 0.00 34.12 3.28
3912 5373 8.830201 AACTCAATGCTTAAACATGCAAATTA 57.170 26.923 0.00 0.00 42.74 1.40
3962 5423 9.796180 ACACACTAAAACATTTAGTAATACCCA 57.204 29.630 13.47 0.00 33.80 4.51
4213 5674 7.110155 TCTAAAGCTAACACTTCTATTTGGGG 58.890 38.462 0.00 0.00 0.00 4.96
4254 5716 2.526304 TCTGACTCGGTCCTTTTGTG 57.474 50.000 2.23 0.00 0.00 3.33
4458 5921 4.311816 ACCTGTTGAAGTTCTGCATTTG 57.688 40.909 4.17 0.00 0.00 2.32
5079 6544 2.418060 GGAGCTGAGTGAGAAGGCTAAC 60.418 54.545 0.00 0.00 33.13 2.34
5153 6618 6.138761 GGTTTCTCGCTAAAATATGCAGATG 58.861 40.000 0.00 0.00 0.00 2.90
5227 6692 3.945285 TGGAAACCTTGTCACTCACTTTC 59.055 43.478 0.00 0.00 0.00 2.62
5231 6696 1.867233 CCTTGTCACTCACTTTCGTGG 59.133 52.381 0.00 0.00 41.53 4.94
5276 6742 7.284919 TGGACGATGACATGTGTATAATACT 57.715 36.000 1.15 0.00 0.00 2.12
5277 6743 7.145323 TGGACGATGACATGTGTATAATACTG 58.855 38.462 1.15 0.00 0.00 2.74
5298 6766 1.220529 ACTCGTGTGTGTGCAATGAG 58.779 50.000 3.51 3.51 32.62 2.90
5301 6769 1.866601 TCGTGTGTGTGCAATGAGAAG 59.133 47.619 0.00 0.00 0.00 2.85
5311 6779 1.755179 CAATGAGAAGATTGCCGGGT 58.245 50.000 2.18 0.00 0.00 5.28
5312 6780 1.402968 CAATGAGAAGATTGCCGGGTG 59.597 52.381 2.18 0.00 0.00 4.61
5313 6781 0.749454 ATGAGAAGATTGCCGGGTGC 60.749 55.000 2.18 0.00 41.77 5.01
5339 6808 0.112995 AATGGAGCTCCTGTTTGCCA 59.887 50.000 32.28 11.70 36.82 4.92
5342 6811 2.281761 AGCTCCTGTTTGCCACCG 60.282 61.111 0.00 0.00 0.00 4.94
5355 6835 1.946747 TGCCACCGCTAATGGTAACAC 60.947 52.381 0.00 0.00 43.65 3.32
5375 6855 6.808008 ACACTGTTGATCCTTGTATTTCTG 57.192 37.500 0.00 0.00 0.00 3.02
5377 6857 6.998074 ACACTGTTGATCCTTGTATTTCTGAA 59.002 34.615 0.00 0.00 0.00 3.02
5417 6910 6.173339 ACATGTTACTCTTGGATAGTTGGTG 58.827 40.000 0.00 0.00 0.00 4.17
5467 6960 6.674694 ATAATGTGTGCAAGAGAGATGTTC 57.325 37.500 0.00 0.00 0.00 3.18
5497 6990 1.072965 CCTGATGATGGGAAGGTAGCC 59.927 57.143 0.00 0.00 0.00 3.93
5623 7116 1.269726 CCATGTGTTGGTGAGGTTTGC 60.270 52.381 0.00 0.00 40.99 3.68
5697 7190 1.686587 TGTCTCCACGCGATATTCCAT 59.313 47.619 15.93 0.00 0.00 3.41
6119 7621 1.962144 CTTGCTTTCTGTGGCCTGG 59.038 57.895 3.32 0.00 0.00 4.45
6125 7627 4.648626 TCTGTGGCCTGGTGCAGC 62.649 66.667 9.47 9.47 43.89 5.25
6183 7685 0.180642 TACGCAACCAACTTCCCACA 59.819 50.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.280524 CCGTTGGTTCGCTGGTGA 60.281 61.111 0.00 0.00 0.00 4.02
1 2 2.280524 TCCGTTGGTTCGCTGGTG 60.281 61.111 0.00 0.00 0.00 4.17
2 3 2.280592 GTCCGTTGGTTCGCTGGT 60.281 61.111 0.00 0.00 0.00 4.00
3 4 3.411351 CGTCCGTTGGTTCGCTGG 61.411 66.667 0.00 0.00 0.00 4.85
4 5 3.411351 CCGTCCGTTGGTTCGCTG 61.411 66.667 0.00 0.00 0.00 5.18
5 6 3.569049 CTCCGTCCGTTGGTTCGCT 62.569 63.158 0.00 0.00 0.00 4.93
6 7 3.110178 CTCCGTCCGTTGGTTCGC 61.110 66.667 0.00 0.00 0.00 4.70
7 8 3.110178 GCTCCGTCCGTTGGTTCG 61.110 66.667 0.00 0.00 0.00 3.95
8 9 2.029964 TGCTCCGTCCGTTGGTTC 59.970 61.111 0.00 0.00 0.00 3.62
9 10 2.280592 GTGCTCCGTCCGTTGGTT 60.281 61.111 0.00 0.00 0.00 3.67
10 11 3.515316 CTGTGCTCCGTCCGTTGGT 62.515 63.158 0.00 0.00 0.00 3.67
11 12 2.738521 CTGTGCTCCGTCCGTTGG 60.739 66.667 0.00 0.00 0.00 3.77
12 13 2.022129 GTCTGTGCTCCGTCCGTTG 61.022 63.158 0.00 0.00 0.00 4.10
13 14 2.338984 GTCTGTGCTCCGTCCGTT 59.661 61.111 0.00 0.00 0.00 4.44
14 15 4.039357 CGTCTGTGCTCCGTCCGT 62.039 66.667 0.00 0.00 0.00 4.69
15 16 4.778415 CCGTCTGTGCTCCGTCCG 62.778 72.222 0.00 0.00 0.00 4.79
16 17 4.436998 CCCGTCTGTGCTCCGTCC 62.437 72.222 0.00 0.00 0.00 4.79
17 18 4.436998 CCCCGTCTGTGCTCCGTC 62.437 72.222 0.00 0.00 0.00 4.79
20 21 3.775654 CTCCCCCGTCTGTGCTCC 61.776 72.222 0.00 0.00 0.00 4.70
21 22 3.775654 CCTCCCCCGTCTGTGCTC 61.776 72.222 0.00 0.00 0.00 4.26
22 23 3.233919 TACCTCCCCCGTCTGTGCT 62.234 63.158 0.00 0.00 0.00 4.40
23 24 2.682494 TACCTCCCCCGTCTGTGC 60.682 66.667 0.00 0.00 0.00 4.57
24 25 2.722201 GCTACCTCCCCCGTCTGTG 61.722 68.421 0.00 0.00 0.00 3.66
25 26 2.363925 GCTACCTCCCCCGTCTGT 60.364 66.667 0.00 0.00 0.00 3.41
26 27 3.155167 GGCTACCTCCCCCGTCTG 61.155 72.222 0.00 0.00 0.00 3.51
27 28 4.835891 CGGCTACCTCCCCCGTCT 62.836 72.222 0.00 0.00 37.36 4.18
31 32 4.153330 TCTCCGGCTACCTCCCCC 62.153 72.222 0.00 0.00 0.00 5.40
32 33 2.522193 CTCTCCGGCTACCTCCCC 60.522 72.222 0.00 0.00 0.00 4.81
33 34 2.522193 CCTCTCCGGCTACCTCCC 60.522 72.222 0.00 0.00 0.00 4.30
34 35 1.529713 CTCCTCTCCGGCTACCTCC 60.530 68.421 0.00 0.00 0.00 4.30
35 36 1.529713 CCTCCTCTCCGGCTACCTC 60.530 68.421 0.00 0.00 0.00 3.85
36 37 2.604152 CCTCCTCTCCGGCTACCT 59.396 66.667 0.00 0.00 0.00 3.08
37 38 2.522193 CCCTCCTCTCCGGCTACC 60.522 72.222 0.00 0.00 0.00 3.18
38 39 2.522193 CCCCTCCTCTCCGGCTAC 60.522 72.222 0.00 0.00 0.00 3.58
39 40 3.834056 CCCCCTCCTCTCCGGCTA 61.834 72.222 0.00 0.00 0.00 3.93
41 42 4.798682 TTCCCCCTCCTCTCCGGC 62.799 72.222 0.00 0.00 0.00 6.13
42 43 1.384643 ATTTCCCCCTCCTCTCCGG 60.385 63.158 0.00 0.00 0.00 5.14
43 44 0.691078 TGATTTCCCCCTCCTCTCCG 60.691 60.000 0.00 0.00 0.00 4.63
44 45 1.135960 CTGATTTCCCCCTCCTCTCC 58.864 60.000 0.00 0.00 0.00 3.71
45 46 1.135960 CCTGATTTCCCCCTCCTCTC 58.864 60.000 0.00 0.00 0.00 3.20
46 47 0.423544 ACCTGATTTCCCCCTCCTCT 59.576 55.000 0.00 0.00 0.00 3.69
47 48 0.840617 GACCTGATTTCCCCCTCCTC 59.159 60.000 0.00 0.00 0.00 3.71
48 49 0.624795 GGACCTGATTTCCCCCTCCT 60.625 60.000 0.00 0.00 0.00 3.69
49 50 1.923586 GGACCTGATTTCCCCCTCC 59.076 63.158 0.00 0.00 0.00 4.30
50 51 0.981277 TCGGACCTGATTTCCCCCTC 60.981 60.000 0.00 0.00 0.00 4.30
51 52 1.082206 TCGGACCTGATTTCCCCCT 59.918 57.895 0.00 0.00 0.00 4.79
52 53 1.223763 GTCGGACCTGATTTCCCCC 59.776 63.158 0.00 0.00 0.00 5.40
53 54 1.153429 CGTCGGACCTGATTTCCCC 60.153 63.158 1.91 0.00 0.00 4.81
54 55 1.814169 GCGTCGGACCTGATTTCCC 60.814 63.158 1.91 0.00 0.00 3.97
55 56 1.814169 GGCGTCGGACCTGATTTCC 60.814 63.158 1.91 0.00 0.00 3.13
56 57 2.165301 CGGCGTCGGACCTGATTTC 61.165 63.158 0.00 0.00 0.00 2.17
57 58 2.125673 CGGCGTCGGACCTGATTT 60.126 61.111 0.00 0.00 0.00 2.17
68 69 4.218478 GTGTATTGCGCCGGCGTC 62.218 66.667 45.02 36.08 44.10 5.19
75 76 3.876198 CTGGGCGGTGTATTGCGC 61.876 66.667 0.00 0.00 43.57 6.09
76 77 3.202001 CCTGGGCGGTGTATTGCG 61.202 66.667 0.00 0.00 0.00 4.85
77 78 3.518068 GCCTGGGCGGTGTATTGC 61.518 66.667 0.00 0.00 34.25 3.56
78 79 2.828549 GGCCTGGGCGGTGTATTG 60.829 66.667 3.84 0.00 43.06 1.90
79 80 4.123545 GGGCCTGGGCGGTGTATT 62.124 66.667 14.63 0.00 43.06 1.89
86 87 3.488569 TATCCTTGGGCCTGGGCG 61.489 66.667 14.63 0.00 43.06 6.13
87 88 2.195956 GTATCCTTGGGCCTGGGC 59.804 66.667 12.58 12.58 41.06 5.36
88 89 2.006415 TGGTATCCTTGGGCCTGGG 61.006 63.158 4.53 7.08 0.00 4.45
89 90 1.227383 GTGGTATCCTTGGGCCTGG 59.773 63.158 4.53 7.51 0.00 4.45
90 91 1.153168 CGTGGTATCCTTGGGCCTG 60.153 63.158 4.53 0.00 0.00 4.85
91 92 2.375345 CCGTGGTATCCTTGGGCCT 61.375 63.158 4.53 0.00 0.00 5.19
92 93 2.192175 CCGTGGTATCCTTGGGCC 59.808 66.667 0.00 0.00 0.00 5.80
93 94 2.192175 CCCGTGGTATCCTTGGGC 59.808 66.667 3.74 0.00 33.39 5.36
94 95 2.192175 GCCCGTGGTATCCTTGGG 59.808 66.667 10.18 10.18 40.16 4.12
95 96 1.153168 CTGCCCGTGGTATCCTTGG 60.153 63.158 0.00 0.00 0.00 3.61
96 97 1.153168 CCTGCCCGTGGTATCCTTG 60.153 63.158 0.00 0.00 0.00 3.61
97 98 2.375345 CCCTGCCCGTGGTATCCTT 61.375 63.158 0.00 0.00 0.00 3.36
98 99 2.768344 CCCTGCCCGTGGTATCCT 60.768 66.667 0.00 0.00 0.00 3.24
99 100 3.873812 CCCCTGCCCGTGGTATCC 61.874 72.222 0.00 0.00 0.00 2.59
100 101 2.766651 TCCCCTGCCCGTGGTATC 60.767 66.667 0.00 0.00 0.00 2.24
101 102 3.087906 GTCCCCTGCCCGTGGTAT 61.088 66.667 0.00 0.00 0.00 2.73
111 112 2.678934 TTCCTCCGACGTCCCCTG 60.679 66.667 10.58 0.00 0.00 4.45
112 113 2.679287 GTTCCTCCGACGTCCCCT 60.679 66.667 10.58 0.00 0.00 4.79
113 114 3.767806 GGTTCCTCCGACGTCCCC 61.768 72.222 10.58 0.00 0.00 4.81
114 115 2.843912 TAGGGTTCCTCCGACGTCCC 62.844 65.000 10.58 2.96 34.61 4.46
115 116 1.379044 TAGGGTTCCTCCGACGTCC 60.379 63.158 10.58 0.00 34.61 4.79
116 117 1.805910 GTAGGGTTCCTCCGACGTC 59.194 63.158 5.18 5.18 34.61 4.34
117 118 2.042831 CGTAGGGTTCCTCCGACGT 61.043 63.158 8.07 0.00 46.08 4.34
118 119 2.796651 CGTAGGGTTCCTCCGACG 59.203 66.667 2.57 2.57 46.04 5.12
131 132 4.914420 CTCTCGCAGGCGCCGTAG 62.914 72.222 23.20 16.51 39.59 3.51
200 201 4.745751 TAAGTTCGCGCCCGGTGG 62.746 66.667 0.00 0.00 34.56 4.61
201 202 3.484547 GTAAGTTCGCGCCCGGTG 61.485 66.667 0.00 0.00 34.56 4.94
203 204 4.781959 TCGTAAGTTCGCGCCCGG 62.782 66.667 0.00 0.00 39.48 5.73
204 205 3.539107 GTCGTAAGTTCGCGCCCG 61.539 66.667 0.00 0.00 39.48 6.13
205 206 2.431260 TGTCGTAAGTTCGCGCCC 60.431 61.111 0.00 0.00 39.48 6.13
206 207 2.723719 GGTGTCGTAAGTTCGCGCC 61.724 63.158 0.00 0.00 39.48 6.53
207 208 2.767697 GGTGTCGTAAGTTCGCGC 59.232 61.111 0.00 0.00 39.48 6.86
208 209 3.051171 GCGGTGTCGTAAGTTCGCG 62.051 63.158 0.00 0.00 38.89 5.87
209 210 2.767697 GCGGTGTCGTAAGTTCGC 59.232 61.111 0.00 0.00 38.89 4.70
210 211 3.051171 GCGCGGTGTCGTAAGTTCG 62.051 63.158 8.83 0.00 38.89 3.95
211 212 1.731969 AGCGCGGTGTCGTAAGTTC 60.732 57.895 11.39 0.00 38.89 3.01
212 213 2.019951 CAGCGCGGTGTCGTAAGTT 61.020 57.895 29.05 0.00 38.89 2.66
213 214 2.430244 CAGCGCGGTGTCGTAAGT 60.430 61.111 29.05 0.00 38.89 2.24
214 215 3.179265 CCAGCGCGGTGTCGTAAG 61.179 66.667 33.39 15.69 38.89 2.34
215 216 3.620300 CTCCAGCGCGGTGTCGTAA 62.620 63.158 33.39 14.32 38.89 3.18
216 217 4.111016 CTCCAGCGCGGTGTCGTA 62.111 66.667 33.39 16.61 38.89 3.43
222 223 4.314440 TTTCTGCTCCAGCGCGGT 62.314 61.111 4.23 4.23 45.83 5.68
223 224 3.793144 GTTTCTGCTCCAGCGCGG 61.793 66.667 8.83 11.37 45.83 6.46
224 225 4.139420 CGTTTCTGCTCCAGCGCG 62.139 66.667 0.00 0.00 45.83 6.86
225 226 2.738521 TCGTTTCTGCTCCAGCGC 60.739 61.111 0.00 0.00 45.83 5.92
226 227 2.720758 CGTCGTTTCTGCTCCAGCG 61.721 63.158 0.00 0.00 45.83 5.18
227 228 2.383527 CCGTCGTTTCTGCTCCAGC 61.384 63.158 0.00 0.00 42.50 4.85
228 229 1.738099 CCCGTCGTTTCTGCTCCAG 60.738 63.158 0.00 0.00 0.00 3.86
229 230 2.342279 CCCGTCGTTTCTGCTCCA 59.658 61.111 0.00 0.00 0.00 3.86
230 231 3.119096 GCCCGTCGTTTCTGCTCC 61.119 66.667 0.00 0.00 0.00 4.70
231 232 2.357034 TGCCCGTCGTTTCTGCTC 60.357 61.111 0.00 0.00 0.00 4.26
232 233 2.357517 CTGCCCGTCGTTTCTGCT 60.358 61.111 0.00 0.00 0.00 4.24
233 234 3.423154 CCTGCCCGTCGTTTCTGC 61.423 66.667 0.00 0.00 0.00 4.26
234 235 3.423154 GCCTGCCCGTCGTTTCTG 61.423 66.667 0.00 0.00 0.00 3.02
235 236 3.883744 CTGCCTGCCCGTCGTTTCT 62.884 63.158 0.00 0.00 0.00 2.52
236 237 3.423154 CTGCCTGCCCGTCGTTTC 61.423 66.667 0.00 0.00 0.00 2.78
271 272 4.138815 ATTCCCCCTCCCCCTCCC 62.139 72.222 0.00 0.00 0.00 4.30
272 273 2.450699 GATTCCCCCTCCCCCTCC 60.451 72.222 0.00 0.00 0.00 4.30
273 274 2.849646 CGATTCCCCCTCCCCCTC 60.850 72.222 0.00 0.00 0.00 4.30
274 275 4.516326 CCGATTCCCCCTCCCCCT 62.516 72.222 0.00 0.00 0.00 4.79
275 276 4.509412 TCCGATTCCCCCTCCCCC 62.509 72.222 0.00 0.00 0.00 5.40
276 277 2.849646 CTCCGATTCCCCCTCCCC 60.850 72.222 0.00 0.00 0.00 4.81
277 278 2.040779 ACTCCGATTCCCCCTCCC 60.041 66.667 0.00 0.00 0.00 4.30
278 279 2.499827 CGACTCCGATTCCCCCTCC 61.500 68.421 0.00 0.00 38.22 4.30
279 280 2.499827 CCGACTCCGATTCCCCCTC 61.500 68.421 0.00 0.00 38.22 4.30
280 281 2.444140 CCGACTCCGATTCCCCCT 60.444 66.667 0.00 0.00 38.22 4.79
281 282 2.443390 TCCGACTCCGATTCCCCC 60.443 66.667 0.00 0.00 38.22 5.40
282 283 1.736365 GACTCCGACTCCGATTCCCC 61.736 65.000 0.00 0.00 38.22 4.81
283 284 1.734748 GACTCCGACTCCGATTCCC 59.265 63.158 0.00 0.00 38.22 3.97
284 285 1.734748 GGACTCCGACTCCGATTCC 59.265 63.158 0.00 0.00 38.22 3.01
302 303 0.737715 CTCTTGGTTCCGAGGCTTCG 60.738 60.000 11.85 11.85 46.29 3.79
303 304 1.021920 GCTCTTGGTTCCGAGGCTTC 61.022 60.000 6.29 0.00 0.00 3.86
304 305 1.003233 GCTCTTGGTTCCGAGGCTT 60.003 57.895 6.29 0.00 0.00 4.35
305 306 2.665603 GCTCTTGGTTCCGAGGCT 59.334 61.111 6.29 0.00 0.00 4.58
306 307 2.436824 GGCTCTTGGTTCCGAGGC 60.437 66.667 6.29 8.16 43.97 4.70
307 308 2.124507 TTGGGCTCTTGGTTCCGAGG 62.125 60.000 6.29 0.00 0.00 4.63
308 309 0.250727 TTTGGGCTCTTGGTTCCGAG 60.251 55.000 0.00 0.00 0.00 4.63
309 310 0.183971 TTTTGGGCTCTTGGTTCCGA 59.816 50.000 0.00 0.00 0.00 4.55
310 311 1.256812 ATTTTGGGCTCTTGGTTCCG 58.743 50.000 0.00 0.00 0.00 4.30
311 312 3.181455 ACAAATTTTGGGCTCTTGGTTCC 60.181 43.478 13.42 0.00 34.12 3.62
312 313 4.071961 ACAAATTTTGGGCTCTTGGTTC 57.928 40.909 13.42 0.00 34.12 3.62
313 314 4.198530 CAACAAATTTTGGGCTCTTGGTT 58.801 39.130 13.42 0.00 34.12 3.67
314 315 3.433456 CCAACAAATTTTGGGCTCTTGGT 60.433 43.478 13.42 0.00 42.23 3.67
315 316 3.140623 CCAACAAATTTTGGGCTCTTGG 58.859 45.455 13.42 12.45 42.23 3.61
316 317 2.549329 GCCAACAAATTTTGGGCTCTTG 59.451 45.455 17.29 10.60 45.55 3.02
317 318 2.806382 CGCCAACAAATTTTGGGCTCTT 60.806 45.455 20.25 3.03 45.55 2.85
318 319 1.270252 CGCCAACAAATTTTGGGCTCT 60.270 47.619 20.25 0.00 45.55 4.09
319 320 1.147473 CGCCAACAAATTTTGGGCTC 58.853 50.000 20.25 6.01 45.55 4.70
320 321 0.755686 TCGCCAACAAATTTTGGGCT 59.244 45.000 20.25 2.56 45.55 5.19
321 322 1.147473 CTCGCCAACAAATTTTGGGC 58.853 50.000 15.51 15.51 45.55 5.36
322 323 1.607767 CCCTCGCCAACAAATTTTGGG 60.608 52.381 13.42 7.01 45.55 4.12
324 325 1.147473 GCCCTCGCCAACAAATTTTG 58.853 50.000 7.59 7.59 0.00 2.44
325 326 0.755686 TGCCCTCGCCAACAAATTTT 59.244 45.000 0.00 0.00 0.00 1.82
326 327 0.318120 CTGCCCTCGCCAACAAATTT 59.682 50.000 0.00 0.00 0.00 1.82
327 328 1.535204 CCTGCCCTCGCCAACAAATT 61.535 55.000 0.00 0.00 0.00 1.82
328 329 1.978617 CCTGCCCTCGCCAACAAAT 60.979 57.895 0.00 0.00 0.00 2.32
329 330 2.597217 CCTGCCCTCGCCAACAAA 60.597 61.111 0.00 0.00 0.00 2.83
330 331 3.551496 CTCCTGCCCTCGCCAACAA 62.551 63.158 0.00 0.00 0.00 2.83
331 332 4.020617 CTCCTGCCCTCGCCAACA 62.021 66.667 0.00 0.00 0.00 3.33
338 339 2.498726 CTTCGAGCTCCTGCCCTC 59.501 66.667 8.47 0.00 40.80 4.30
339 340 3.780173 GCTTCGAGCTCCTGCCCT 61.780 66.667 8.47 0.00 38.45 5.19
340 341 4.087892 TGCTTCGAGCTCCTGCCC 62.088 66.667 8.47 0.00 42.97 5.36
341 342 2.817396 GTGCTTCGAGCTCCTGCC 60.817 66.667 8.47 1.32 42.97 4.85
342 343 2.047844 TGTGCTTCGAGCTCCTGC 60.048 61.111 8.47 10.48 42.97 4.85
343 344 0.458197 CTCTGTGCTTCGAGCTCCTG 60.458 60.000 8.47 0.00 42.97 3.86
344 345 1.889454 CTCTGTGCTTCGAGCTCCT 59.111 57.895 8.47 0.00 42.97 3.69
345 346 1.809209 GCTCTGTGCTTCGAGCTCC 60.809 63.158 8.47 0.00 46.87 4.70
346 347 3.779345 GCTCTGTGCTTCGAGCTC 58.221 61.111 2.73 2.73 46.87 4.09
348 349 2.126307 TCGCTCTGTGCTTCGAGC 60.126 61.111 10.37 10.37 46.91 5.03
349 350 1.515952 CCTCGCTCTGTGCTTCGAG 60.516 63.158 3.79 3.79 45.50 4.04
350 351 1.927608 CTCCTCGCTCTGTGCTTCGA 61.928 60.000 0.00 0.00 40.11 3.71
351 352 1.515952 CTCCTCGCTCTGTGCTTCG 60.516 63.158 0.00 0.00 40.11 3.79
352 353 0.735632 CACTCCTCGCTCTGTGCTTC 60.736 60.000 0.00 0.00 40.11 3.86
353 354 1.291588 CACTCCTCGCTCTGTGCTT 59.708 57.895 0.00 0.00 40.11 3.91
354 355 2.644212 CCACTCCTCGCTCTGTGCT 61.644 63.158 0.00 0.00 40.11 4.40
355 356 2.125753 CCACTCCTCGCTCTGTGC 60.126 66.667 0.00 0.00 38.57 4.57
356 357 1.214062 GTCCACTCCTCGCTCTGTG 59.786 63.158 0.00 0.00 0.00 3.66
357 358 2.336478 CGTCCACTCCTCGCTCTGT 61.336 63.158 0.00 0.00 0.00 3.41
358 359 2.041115 TCGTCCACTCCTCGCTCTG 61.041 63.158 0.00 0.00 0.00 3.35
359 360 2.041686 GTCGTCCACTCCTCGCTCT 61.042 63.158 0.00 0.00 0.00 4.09
360 361 2.486042 GTCGTCCACTCCTCGCTC 59.514 66.667 0.00 0.00 0.00 5.03
361 362 3.432588 CGTCGTCCACTCCTCGCT 61.433 66.667 0.00 0.00 0.00 4.93
362 363 4.477975 CCGTCGTCCACTCCTCGC 62.478 72.222 0.00 0.00 0.00 5.03
363 364 3.812019 CCCGTCGTCCACTCCTCG 61.812 72.222 0.00 0.00 0.00 4.63
364 365 3.450115 CCCCGTCGTCCACTCCTC 61.450 72.222 0.00 0.00 0.00 3.71
365 366 3.940506 CTCCCCGTCGTCCACTCCT 62.941 68.421 0.00 0.00 0.00 3.69
366 367 3.450115 CTCCCCGTCGTCCACTCC 61.450 72.222 0.00 0.00 0.00 3.85
367 368 3.450115 CCTCCCCGTCGTCCACTC 61.450 72.222 0.00 0.00 0.00 3.51
368 369 3.940506 CTCCTCCCCGTCGTCCACT 62.941 68.421 0.00 0.00 0.00 4.00
369 370 3.450115 CTCCTCCCCGTCGTCCAC 61.450 72.222 0.00 0.00 0.00 4.02
370 371 3.654143 TCTCCTCCCCGTCGTCCA 61.654 66.667 0.00 0.00 0.00 4.02
371 372 3.139469 GTCTCCTCCCCGTCGTCC 61.139 72.222 0.00 0.00 0.00 4.79
372 373 2.045143 AGTCTCCTCCCCGTCGTC 60.045 66.667 0.00 0.00 0.00 4.20
373 374 2.361357 CAGTCTCCTCCCCGTCGT 60.361 66.667 0.00 0.00 0.00 4.34
374 375 3.141488 CCAGTCTCCTCCCCGTCG 61.141 72.222 0.00 0.00 0.00 5.12
375 376 2.760385 CCCAGTCTCCTCCCCGTC 60.760 72.222 0.00 0.00 0.00 4.79
376 377 4.400251 CCCCAGTCTCCTCCCCGT 62.400 72.222 0.00 0.00 0.00 5.28
377 378 4.075793 TCCCCAGTCTCCTCCCCG 62.076 72.222 0.00 0.00 0.00 5.73
378 379 2.365768 GTCCCCAGTCTCCTCCCC 60.366 72.222 0.00 0.00 0.00 4.81
379 380 2.760385 CGTCCCCAGTCTCCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
380 381 1.755008 CTCGTCCCCAGTCTCCTCC 60.755 68.421 0.00 0.00 0.00 4.30
381 382 1.033202 GTCTCGTCCCCAGTCTCCTC 61.033 65.000 0.00 0.00 0.00 3.71
382 383 1.000646 GTCTCGTCCCCAGTCTCCT 60.001 63.158 0.00 0.00 0.00 3.69
383 384 1.000646 AGTCTCGTCCCCAGTCTCC 60.001 63.158 0.00 0.00 0.00 3.71
384 385 1.939769 GCAGTCTCGTCCCCAGTCTC 61.940 65.000 0.00 0.00 0.00 3.36
385 386 1.979693 GCAGTCTCGTCCCCAGTCT 60.980 63.158 0.00 0.00 0.00 3.24
386 387 2.574399 GCAGTCTCGTCCCCAGTC 59.426 66.667 0.00 0.00 0.00 3.51
387 388 3.374402 CGCAGTCTCGTCCCCAGT 61.374 66.667 0.00 0.00 0.00 4.00
388 389 4.803426 GCGCAGTCTCGTCCCCAG 62.803 72.222 0.30 0.00 0.00 4.45
392 393 4.838486 CTCCGCGCAGTCTCGTCC 62.838 72.222 8.75 0.00 0.00 4.79
393 394 4.838486 CCTCCGCGCAGTCTCGTC 62.838 72.222 8.75 0.00 0.00 4.20
470 471 4.548513 CTCTCCCTCCCCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
471 472 3.036959 TCTCTCCCTCCCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
472 473 2.612251 CTCTCTCCCTCCCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
473 474 2.612251 CCTCTCTCCCTCCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
474 475 3.039526 CCCTCTCTCCCTCCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
475 476 4.179599 CCCCTCTCTCCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
476 477 3.036959 TCCCCTCTCTCCCTCCCC 61.037 72.222 0.00 0.00 0.00 4.81
477 478 1.595058 TTCTCCCCTCTCTCCCTCCC 61.595 65.000 0.00 0.00 0.00 4.30
478 479 0.340208 TTTCTCCCCTCTCTCCCTCC 59.660 60.000 0.00 0.00 0.00 4.30
479 480 1.691163 CCTTTCTCCCCTCTCTCCCTC 60.691 61.905 0.00 0.00 0.00 4.30
480 481 0.341609 CCTTTCTCCCCTCTCTCCCT 59.658 60.000 0.00 0.00 0.00 4.20
481 482 0.340208 TCCTTTCTCCCCTCTCTCCC 59.660 60.000 0.00 0.00 0.00 4.30
482 483 2.255770 TTCCTTTCTCCCCTCTCTCC 57.744 55.000 0.00 0.00 0.00 3.71
483 484 2.093181 GCTTTCCTTTCTCCCCTCTCTC 60.093 54.545 0.00 0.00 0.00 3.20
484 485 1.912731 GCTTTCCTTTCTCCCCTCTCT 59.087 52.381 0.00 0.00 0.00 3.10
485 486 1.065053 GGCTTTCCTTTCTCCCCTCTC 60.065 57.143 0.00 0.00 0.00 3.20
486 487 0.995803 GGCTTTCCTTTCTCCCCTCT 59.004 55.000 0.00 0.00 0.00 3.69
487 488 0.698818 TGGCTTTCCTTTCTCCCCTC 59.301 55.000 0.00 0.00 0.00 4.30
488 489 1.286257 GATGGCTTTCCTTTCTCCCCT 59.714 52.381 0.00 0.00 0.00 4.79
489 490 1.286257 AGATGGCTTTCCTTTCTCCCC 59.714 52.381 0.00 0.00 0.00 4.81
490 491 2.373224 CAGATGGCTTTCCTTTCTCCC 58.627 52.381 0.00 0.00 0.00 4.30
491 492 1.747924 GCAGATGGCTTTCCTTTCTCC 59.252 52.381 0.00 0.00 40.25 3.71
492 493 2.440409 TGCAGATGGCTTTCCTTTCTC 58.560 47.619 0.00 0.00 45.15 2.87
493 494 2.560105 GTTGCAGATGGCTTTCCTTTCT 59.440 45.455 0.00 0.00 45.15 2.52
494 495 2.669391 CGTTGCAGATGGCTTTCCTTTC 60.669 50.000 0.00 0.00 45.15 2.62
495 496 1.270550 CGTTGCAGATGGCTTTCCTTT 59.729 47.619 0.00 0.00 45.15 3.11
496 497 0.883833 CGTTGCAGATGGCTTTCCTT 59.116 50.000 0.00 0.00 45.15 3.36
497 498 0.962356 CCGTTGCAGATGGCTTTCCT 60.962 55.000 0.00 0.00 45.15 3.36
498 499 1.508088 CCGTTGCAGATGGCTTTCC 59.492 57.895 0.00 0.00 45.15 3.13
499 500 0.960364 TCCCGTTGCAGATGGCTTTC 60.960 55.000 0.00 0.00 45.15 2.62
500 501 1.074775 TCCCGTTGCAGATGGCTTT 59.925 52.632 0.00 0.00 45.15 3.51
501 502 1.675641 GTCCCGTTGCAGATGGCTT 60.676 57.895 0.00 0.00 45.15 4.35
502 503 2.045926 GTCCCGTTGCAGATGGCT 60.046 61.111 0.00 0.00 45.15 4.75
503 504 3.134127 GGTCCCGTTGCAGATGGC 61.134 66.667 0.00 0.00 45.13 4.40
504 505 2.438434 GGGTCCCGTTGCAGATGG 60.438 66.667 0.00 0.00 0.00 3.51
505 506 1.746615 CAGGGTCCCGTTGCAGATG 60.747 63.158 0.99 0.00 0.00 2.90
506 507 2.671070 CAGGGTCCCGTTGCAGAT 59.329 61.111 0.99 0.00 0.00 2.90
507 508 3.636231 CCAGGGTCCCGTTGCAGA 61.636 66.667 0.99 0.00 0.00 4.26
508 509 3.953775 ACCAGGGTCCCGTTGCAG 61.954 66.667 0.99 0.00 0.00 4.41
509 510 4.263572 CACCAGGGTCCCGTTGCA 62.264 66.667 0.99 0.00 0.00 4.08
511 512 3.783362 TTGCACCAGGGTCCCGTTG 62.783 63.158 0.99 2.08 0.00 4.10
512 513 2.366153 AATTGCACCAGGGTCCCGTT 62.366 55.000 0.99 0.00 0.00 4.44
513 514 1.493854 TAATTGCACCAGGGTCCCGT 61.494 55.000 0.99 0.00 0.00 5.28
514 515 1.029947 GTAATTGCACCAGGGTCCCG 61.030 60.000 0.99 0.00 0.00 5.14
515 516 0.683179 GGTAATTGCACCAGGGTCCC 60.683 60.000 0.00 0.00 38.55 4.46
516 517 0.331616 AGGTAATTGCACCAGGGTCC 59.668 55.000 0.31 0.00 41.40 4.46
517 518 1.682087 GGAGGTAATTGCACCAGGGTC 60.682 57.143 0.31 0.00 41.40 4.46
518 519 0.331616 GGAGGTAATTGCACCAGGGT 59.668 55.000 0.31 0.00 41.40 4.34
519 520 0.625849 AGGAGGTAATTGCACCAGGG 59.374 55.000 10.42 0.00 41.40 4.45
699 709 1.063266 TCCTGCCTTTGGTTTTGGACT 60.063 47.619 0.00 0.00 0.00 3.85
758 772 5.435291 AGATGATCGGAAGAATTCTTGCTT 58.565 37.500 29.65 20.13 46.56 3.91
1001 1025 1.494716 GGGAAGGGACGGGAGGAAAA 61.495 60.000 0.00 0.00 0.00 2.29
1027 1061 4.368808 GCGACGCGAAAAGCTGCA 62.369 61.111 15.93 0.00 45.59 4.41
1181 1219 2.960688 GCTTCTGGAAGGAGGGCGT 61.961 63.158 11.61 0.00 41.11 5.68
1183 1221 2.124942 CGCTTCTGGAAGGAGGGC 60.125 66.667 11.61 0.00 46.24 5.19
1185 1223 1.153469 GCTCGCTTCTGGAAGGAGG 60.153 63.158 19.90 9.78 41.11 4.30
1186 1224 1.518133 CGCTCGCTTCTGGAAGGAG 60.518 63.158 16.88 16.88 44.81 3.69
1203 1241 2.024871 GGACGGATCTGCGAGACG 59.975 66.667 0.00 0.00 0.00 4.18
1204 1242 2.024871 CGGACGGATCTGCGAGAC 59.975 66.667 0.00 0.00 0.00 3.36
1734 1778 2.178912 TCAAGTCACGGGGAATGTTC 57.821 50.000 0.00 0.00 0.00 3.18
1871 1921 3.119708 GCAACTTTCTGATCCGCAAATCT 60.120 43.478 0.00 0.00 0.00 2.40
1872 1922 3.119708 AGCAACTTTCTGATCCGCAAATC 60.120 43.478 0.00 0.00 0.00 2.17
1886 1936 2.754552 TCTTCACTGCAACAGCAACTTT 59.245 40.909 0.00 0.00 37.91 2.66
1892 1942 1.595489 CGTGTTCTTCACTGCAACAGC 60.595 52.381 0.00 0.00 44.16 4.40
1919 1969 1.134401 TCCTCAAATCTAAGCCTGCCG 60.134 52.381 0.00 0.00 0.00 5.69
2046 2097 2.079925 GGTCAATTGACAGGAGCTGAC 58.920 52.381 33.42 13.82 46.47 3.51
2116 2167 3.802948 ACGTATCACAAGTCCATCTCC 57.197 47.619 0.00 0.00 0.00 3.71
2134 2191 4.916249 GGAACACCGCTAGATTAATCTACG 59.084 45.833 24.89 24.89 38.32 3.51
2165 2251 6.260271 CAGAATCTACCGGCGATCAGTATATA 59.740 42.308 9.30 0.00 0.00 0.86
2166 2252 5.066634 CAGAATCTACCGGCGATCAGTATAT 59.933 44.000 9.30 0.00 0.00 0.86
2196 2874 3.622455 GCCCAGAGCCTAAACAATACAGT 60.622 47.826 0.00 0.00 34.35 3.55
2497 3222 8.996271 TGACTTCTGCATCACAATGATATTATC 58.004 33.333 0.00 0.00 34.28 1.75
2546 3271 7.920151 CCATGAAGCCAACGATATAAAATTCAA 59.080 33.333 0.00 0.00 0.00 2.69
2752 3493 5.179929 TGTGCATCTGTGTGAATTCTACAAG 59.820 40.000 7.05 9.32 0.00 3.16
2761 3502 1.501169 CGAGTGTGCATCTGTGTGAA 58.499 50.000 0.00 0.00 0.00 3.18
3825 5286 9.695526 CTGAAATGTCAAATTTTGGTAGATTGA 57.304 29.630 9.18 0.00 31.88 2.57
3867 5328 6.760770 TGAGTTCCAAAATCCAAATGTTGTTC 59.239 34.615 0.00 0.00 29.29 3.18
3886 5347 6.768029 TTTGCATGTTTAAGCATTGAGTTC 57.232 33.333 1.53 0.00 40.94 3.01
3962 5423 0.821711 TAAAGCCCGCACTTTGCTGT 60.822 50.000 10.21 0.00 42.25 4.40
4213 5674 9.436957 TCAGAATTAACAGAAAAGGTGAGATAC 57.563 33.333 0.00 0.00 0.00 2.24
4254 5716 2.416893 GCAAAACCTAGCTAGAGCACAC 59.583 50.000 22.70 3.85 45.16 3.82
5055 6520 0.455410 CCTTCTCACTCAGCTCCTCG 59.545 60.000 0.00 0.00 0.00 4.63
5079 6544 0.326264 CCTCCACAGGGTCCTTGAAG 59.674 60.000 8.21 2.37 35.89 3.02
5117 6582 3.192922 GAAACCCGCCATCGTCCG 61.193 66.667 0.00 0.00 0.00 4.79
5153 6618 1.604278 GTCAACTCTTCAGCCCAACAC 59.396 52.381 0.00 0.00 0.00 3.32
5195 6660 1.435346 AAGGTTTCCAGGTGGAGGGG 61.435 60.000 0.00 0.00 46.36 4.79
5227 6692 8.484008 CAAAATTATTAAACAAACTGGACCACG 58.516 33.333 0.00 0.00 0.00 4.94
5231 6696 8.696175 CGTCCAAAATTATTAAACAAACTGGAC 58.304 33.333 13.23 13.23 43.60 4.02
5276 6742 1.330213 CATTGCACACACACGAGTTCA 59.670 47.619 0.00 0.00 0.00 3.18
5277 6743 1.597195 TCATTGCACACACACGAGTTC 59.403 47.619 0.00 0.00 0.00 3.01
5339 6808 3.071479 CAACAGTGTTACCATTAGCGGT 58.929 45.455 8.49 0.00 43.46 5.68
5342 6811 5.186198 AGGATCAACAGTGTTACCATTAGC 58.814 41.667 20.43 4.15 0.00 3.09
5355 6835 7.678947 ACTTCAGAAATACAAGGATCAACAG 57.321 36.000 0.00 0.00 0.00 3.16
5467 6960 1.696336 CCATCATCAGGTAGGTCAGGG 59.304 57.143 0.00 0.00 0.00 4.45
5497 6990 5.095691 ACTCATGAGCAAACTAAAACACG 57.904 39.130 22.83 0.00 0.00 4.49
5623 7116 2.299582 TCATGTCCAAACAATGCCCAAG 59.700 45.455 0.00 0.00 39.30 3.61
5677 7170 1.107945 TGGAATATCGCGTGGAGACA 58.892 50.000 5.77 0.00 38.70 3.41
5679 7172 1.960689 TGATGGAATATCGCGTGGAGA 59.039 47.619 5.77 0.00 0.00 3.71
5697 7190 7.175990 GTCCAATATACAGGAGTTTTTGGTTGA 59.824 37.037 0.00 0.00 33.85 3.18
5742 7244 8.206325 AGTAGCAGTTATGTGATTTCTGATTG 57.794 34.615 0.00 0.00 0.00 2.67
6119 7621 2.745492 GGCTCAGTCAGGCTGCAC 60.745 66.667 10.34 9.19 44.64 4.57
6125 7627 1.406065 ATCGGATGGGCTCAGTCAGG 61.406 60.000 0.00 0.00 0.00 3.86
6183 7685 2.957402 TGTTGCAGATGTTTCCCTCT 57.043 45.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.