Multiple sequence alignment - TraesCS7D01G210900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G210900 chr7D 100.000 3525 0 0 1 3525 168989922 168993446 0.000000e+00 6510
1 TraesCS7D01G210900 chr7D 94.232 1283 57 7 645 1912 169422987 169421707 0.000000e+00 1943
2 TraesCS7D01G210900 chr7D 96.656 897 25 3 1016 1909 169024488 169025382 0.000000e+00 1485
3 TraesCS7D01G210900 chr7D 93.729 590 34 1 1966 2552 169498117 169497528 0.000000e+00 881
4 TraesCS7D01G210900 chr7D 84.565 771 101 12 1023 1790 164752773 164752018 0.000000e+00 749
5 TraesCS7D01G210900 chr7D 94.608 408 21 1 2145 2552 169421391 169420985 6.420000e-177 630
6 TraesCS7D01G210900 chrUn 91.365 1436 80 13 730 2149 244606725 244608132 0.000000e+00 1925
7 TraesCS7D01G210900 chrUn 92.504 1214 61 19 523 1714 262504910 262506115 0.000000e+00 1711
8 TraesCS7D01G210900 chrUn 92.169 945 57 10 781 1714 342997743 342996805 0.000000e+00 1319
9 TraesCS7D01G210900 chrUn 93.556 838 38 3 1716 2552 262506256 262507078 0.000000e+00 1234
10 TraesCS7D01G210900 chrUn 93.556 838 38 3 1716 2552 326638841 326639663 0.000000e+00 1234
11 TraesCS7D01G210900 chrUn 92.105 836 41 16 2692 3520 326637731 326638548 0.000000e+00 1155
12 TraesCS7D01G210900 chrUn 95.098 408 16 2 2145 2552 218480563 218480966 1.070000e-179 640
13 TraesCS7D01G210900 chrUn 89.744 390 34 6 3092 3478 218481725 218482111 8.790000e-136 494
14 TraesCS7D01G210900 chr6A 92.927 1329 72 12 835 2149 124422812 124424132 0.000000e+00 1914
15 TraesCS7D01G210900 chr6A 92.565 1197 67 12 835 2017 124917059 124915871 0.000000e+00 1698
16 TraesCS7D01G210900 chr6A 94.634 410 19 3 2145 2552 124424170 124424578 1.790000e-177 632
17 TraesCS7D01G210900 chr6D 91.086 1436 84 13 730 2149 103051553 103052960 0.000000e+00 1903
18 TraesCS7D01G210900 chr6D 90.947 1436 86 13 730 2149 103082860 103084267 0.000000e+00 1892
19 TraesCS7D01G210900 chr6D 89.717 389 36 4 3092 3478 103085467 103085853 8.790000e-136 494
20 TraesCS7D01G210900 chr7A 92.504 1214 61 19 523 1714 171536842 171535637 0.000000e+00 1711
21 TraesCS7D01G210900 chr7A 92.504 1214 61 19 523 1714 171950460 171949255 0.000000e+00 1711
22 TraesCS7D01G210900 chr7A 93.380 1133 64 6 612 1741 172235492 172234368 0.000000e+00 1666
23 TraesCS7D01G210900 chr7A 90.610 1214 81 16 708 1912 171439760 171438571 0.000000e+00 1580
24 TraesCS7D01G210900 chr7A 92.038 942 64 10 781 1714 171877118 171876180 0.000000e+00 1314
25 TraesCS7D01G210900 chr7A 93.556 838 38 3 1716 2552 171947193 171946371 0.000000e+00 1234
26 TraesCS7D01G210900 chr7A 92.206 834 40 16 2698 3524 171534904 171534089 0.000000e+00 1157
27 TraesCS7D01G210900 chr7A 92.289 830 39 16 2698 3520 171948522 171947711 0.000000e+00 1155
28 TraesCS7D01G210900 chr7A 95.502 667 29 1 1886 2552 171438556 171437891 0.000000e+00 1064
29 TraesCS7D01G210900 chr7A 84.498 787 107 13 1002 1785 166491560 166490786 0.000000e+00 763
30 TraesCS7D01G210900 chr7A 84.498 787 107 13 1002 1785 166869280 166870054 0.000000e+00 763
31 TraesCS7D01G210900 chr7A 95.588 408 18 0 2145 2552 172233934 172233527 0.000000e+00 654
32 TraesCS7D01G210900 chr7B 93.438 960 50 7 762 1714 134492068 134493021 0.000000e+00 1411
33 TraesCS7D01G210900 chr7B 93.201 809 33 14 2720 3525 135015762 135014973 0.000000e+00 1170
34 TraesCS7D01G210900 chr7B 84.284 719 104 7 1073 1785 127774787 127774072 0.000000e+00 693
35 TraesCS7D01G210900 chr7B 90.909 165 10 3 2682 2842 135016678 135016515 2.130000e-52 217
36 TraesCS7D01G210900 chr7B 91.667 108 9 0 2935 3042 135016471 135016364 2.190000e-32 150
37 TraesCS7D01G210900 chr2A 90.537 391 20 5 1 375 15338581 15338970 5.250000e-138 501
38 TraesCS7D01G210900 chr2A 90.698 86 7 1 353 438 15338972 15339056 2.880000e-21 113
39 TraesCS7D01G210900 chr3D 80.226 177 29 4 2 177 557460391 557460562 1.030000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G210900 chr7D 168989922 168993446 3524 False 6510.000000 6510 100.000000 1 3525 1 chr7D.!!$F1 3524
1 TraesCS7D01G210900 chr7D 169024488 169025382 894 False 1485.000000 1485 96.656000 1016 1909 1 chr7D.!!$F2 893
2 TraesCS7D01G210900 chr7D 169420985 169422987 2002 True 1286.500000 1943 94.420000 645 2552 2 chr7D.!!$R3 1907
3 TraesCS7D01G210900 chr7D 169497528 169498117 589 True 881.000000 881 93.729000 1966 2552 1 chr7D.!!$R2 586
4 TraesCS7D01G210900 chr7D 164752018 164752773 755 True 749.000000 749 84.565000 1023 1790 1 chr7D.!!$R1 767
5 TraesCS7D01G210900 chrUn 244606725 244608132 1407 False 1925.000000 1925 91.365000 730 2149 1 chrUn.!!$F1 1419
6 TraesCS7D01G210900 chrUn 262504910 262507078 2168 False 1472.500000 1711 93.030000 523 2552 2 chrUn.!!$F3 2029
7 TraesCS7D01G210900 chrUn 342996805 342997743 938 True 1319.000000 1319 92.169000 781 1714 1 chrUn.!!$R1 933
8 TraesCS7D01G210900 chrUn 326637731 326639663 1932 False 1194.500000 1234 92.830500 1716 3520 2 chrUn.!!$F4 1804
9 TraesCS7D01G210900 chrUn 218480563 218482111 1548 False 567.000000 640 92.421000 2145 3478 2 chrUn.!!$F2 1333
10 TraesCS7D01G210900 chr6A 124915871 124917059 1188 True 1698.000000 1698 92.565000 835 2017 1 chr6A.!!$R1 1182
11 TraesCS7D01G210900 chr6A 124422812 124424578 1766 False 1273.000000 1914 93.780500 835 2552 2 chr6A.!!$F1 1717
12 TraesCS7D01G210900 chr6D 103051553 103052960 1407 False 1903.000000 1903 91.086000 730 2149 1 chr6D.!!$F1 1419
13 TraesCS7D01G210900 chr6D 103082860 103085853 2993 False 1193.000000 1892 90.332000 730 3478 2 chr6D.!!$F2 2748
14 TraesCS7D01G210900 chr7A 171534089 171536842 2753 True 1434.000000 1711 92.355000 523 3524 2 chr7A.!!$R4 3001
15 TraesCS7D01G210900 chr7A 171946371 171950460 4089 True 1366.666667 1711 92.783000 523 3520 3 chr7A.!!$R5 2997
16 TraesCS7D01G210900 chr7A 171437891 171439760 1869 True 1322.000000 1580 93.056000 708 2552 2 chr7A.!!$R3 1844
17 TraesCS7D01G210900 chr7A 171876180 171877118 938 True 1314.000000 1314 92.038000 781 1714 1 chr7A.!!$R2 933
18 TraesCS7D01G210900 chr7A 172233527 172235492 1965 True 1160.000000 1666 94.484000 612 2552 2 chr7A.!!$R6 1940
19 TraesCS7D01G210900 chr7A 166490786 166491560 774 True 763.000000 763 84.498000 1002 1785 1 chr7A.!!$R1 783
20 TraesCS7D01G210900 chr7A 166869280 166870054 774 False 763.000000 763 84.498000 1002 1785 1 chr7A.!!$F1 783
21 TraesCS7D01G210900 chr7B 134492068 134493021 953 False 1411.000000 1411 93.438000 762 1714 1 chr7B.!!$F1 952
22 TraesCS7D01G210900 chr7B 127774072 127774787 715 True 693.000000 693 84.284000 1073 1785 1 chr7B.!!$R1 712
23 TraesCS7D01G210900 chr7B 135014973 135016678 1705 True 512.333333 1170 91.925667 2682 3525 3 chr7B.!!$R2 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 513 0.108585 TTCAGGCCACTTGACTCCAC 59.891 55.0 5.01 0.0 0.0 4.02 F
514 515 0.321122 CAGGCCACTTGACTCCACTC 60.321 60.0 5.01 0.0 0.0 3.51 F
996 1045 0.619255 TCCCAAATCCTAGTCGCCCA 60.619 55.0 0.00 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 4834 0.179045 AATCGGACTGCAGCATACCC 60.179 55.0 15.27 6.62 0.0 3.69 R
2128 4838 0.179045 GGGTAATCGGACTGCAGCAT 60.179 55.0 15.27 0.00 0.0 3.79 R
2658 5749 0.250295 CCTCGTCCCACAGCTTGAAA 60.250 55.0 0.00 0.00 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.056628 GGACGTCAGAGCTTGATGG 57.943 57.895 18.91 9.22 45.38 3.51
19 20 0.532573 GGACGTCAGAGCTTGATGGA 59.467 55.000 18.91 0.00 45.38 3.41
20 21 1.470632 GGACGTCAGAGCTTGATGGAG 60.471 57.143 18.91 6.10 45.38 3.86
21 22 1.474478 GACGTCAGAGCTTGATGGAGA 59.526 52.381 11.55 0.00 45.38 3.71
22 23 1.895798 ACGTCAGAGCTTGATGGAGAA 59.104 47.619 17.04 0.00 45.38 2.87
23 24 2.094286 ACGTCAGAGCTTGATGGAGAAG 60.094 50.000 17.04 0.00 45.38 2.85
24 25 2.165234 CGTCAGAGCTTGATGGAGAAGA 59.835 50.000 9.13 0.00 38.85 2.87
25 26 3.367806 CGTCAGAGCTTGATGGAGAAGAA 60.368 47.826 9.13 0.00 38.85 2.52
26 27 4.183101 GTCAGAGCTTGATGGAGAAGAAG 58.817 47.826 0.00 0.00 38.29 2.85
27 28 3.837146 TCAGAGCTTGATGGAGAAGAAGT 59.163 43.478 0.00 0.00 0.00 3.01
28 29 5.019470 TCAGAGCTTGATGGAGAAGAAGTA 58.981 41.667 0.00 0.00 0.00 2.24
29 30 5.126869 TCAGAGCTTGATGGAGAAGAAGTAG 59.873 44.000 0.00 0.00 0.00 2.57
30 31 5.126869 CAGAGCTTGATGGAGAAGAAGTAGA 59.873 44.000 0.00 0.00 0.00 2.59
31 32 5.127031 AGAGCTTGATGGAGAAGAAGTAGAC 59.873 44.000 0.00 0.00 0.00 2.59
32 33 4.109050 GCTTGATGGAGAAGAAGTAGACG 58.891 47.826 0.00 0.00 0.00 4.18
33 34 4.677584 CTTGATGGAGAAGAAGTAGACGG 58.322 47.826 0.00 0.00 0.00 4.79
34 35 3.024547 TGATGGAGAAGAAGTAGACGGG 58.975 50.000 0.00 0.00 0.00 5.28
35 36 1.848652 TGGAGAAGAAGTAGACGGGG 58.151 55.000 0.00 0.00 0.00 5.73
36 37 1.356738 TGGAGAAGAAGTAGACGGGGA 59.643 52.381 0.00 0.00 0.00 4.81
37 38 1.750206 GGAGAAGAAGTAGACGGGGAC 59.250 57.143 0.00 0.00 0.00 4.46
62 63 4.431131 CCCCTGTTGCCGCTCCAT 62.431 66.667 0.00 0.00 0.00 3.41
63 64 3.136123 CCCTGTTGCCGCTCCATG 61.136 66.667 0.00 0.00 0.00 3.66
64 65 3.136123 CCTGTTGCCGCTCCATGG 61.136 66.667 4.97 4.97 0.00 3.66
65 66 2.360350 CTGTTGCCGCTCCATGGT 60.360 61.111 12.58 0.00 0.00 3.55
66 67 1.973281 CTGTTGCCGCTCCATGGTT 60.973 57.895 12.58 0.00 0.00 3.67
67 68 2.203972 CTGTTGCCGCTCCATGGTTG 62.204 60.000 12.58 7.38 0.00 3.77
68 69 1.971167 GTTGCCGCTCCATGGTTGA 60.971 57.895 12.58 0.00 0.00 3.18
69 70 1.675310 TTGCCGCTCCATGGTTGAG 60.675 57.895 12.58 2.75 0.00 3.02
70 71 2.825836 GCCGCTCCATGGTTGAGG 60.826 66.667 19.64 19.64 0.00 3.86
71 72 2.989639 CCGCTCCATGGTTGAGGA 59.010 61.111 19.38 0.00 0.00 3.71
78 79 2.191400 TCCATGGTTGAGGAGAAGGAG 58.809 52.381 12.58 0.00 0.00 3.69
79 80 1.211457 CCATGGTTGAGGAGAAGGAGG 59.789 57.143 2.57 0.00 0.00 4.30
80 81 1.912043 CATGGTTGAGGAGAAGGAGGT 59.088 52.381 0.00 0.00 0.00 3.85
81 82 1.645710 TGGTTGAGGAGAAGGAGGTC 58.354 55.000 0.00 0.00 0.00 3.85
82 83 0.906066 GGTTGAGGAGAAGGAGGTCC 59.094 60.000 0.00 0.00 0.00 4.46
84 85 2.192263 GTTGAGGAGAAGGAGGTCCAT 58.808 52.381 0.00 0.00 38.89 3.41
85 86 1.871418 TGAGGAGAAGGAGGTCCATG 58.129 55.000 0.00 0.00 38.89 3.66
86 87 1.127343 GAGGAGAAGGAGGTCCATGG 58.873 60.000 4.97 4.97 38.89 3.66
87 88 0.985490 AGGAGAAGGAGGTCCATGGC 60.985 60.000 6.96 1.78 38.89 4.40
88 89 1.144936 GAGAAGGAGGTCCATGGCG 59.855 63.158 6.96 0.00 38.89 5.69
89 90 2.190578 GAAGGAGGTCCATGGCGG 59.809 66.667 6.96 0.00 38.89 6.13
90 91 4.115199 AAGGAGGTCCATGGCGGC 62.115 66.667 6.96 0.00 38.89 6.53
104 105 4.367023 CGGCGTCCCACGGAGAAA 62.367 66.667 0.00 0.00 42.82 2.52
105 106 2.434359 GGCGTCCCACGGAGAAAG 60.434 66.667 0.00 0.00 42.82 2.62
106 107 3.119096 GCGTCCCACGGAGAAAGC 61.119 66.667 0.00 0.00 42.82 3.51
107 108 2.434359 CGTCCCACGGAGAAAGCC 60.434 66.667 0.00 0.00 38.08 4.35
108 109 2.046217 GTCCCACGGAGAAAGCCC 60.046 66.667 0.00 0.00 29.39 5.19
109 110 3.327404 TCCCACGGAGAAAGCCCC 61.327 66.667 0.00 0.00 0.00 5.80
110 111 4.426313 CCCACGGAGAAAGCCCCC 62.426 72.222 0.00 0.00 0.00 5.40
112 113 2.359975 CACGGAGAAAGCCCCCAC 60.360 66.667 0.00 0.00 0.00 4.61
113 114 2.852075 ACGGAGAAAGCCCCCACA 60.852 61.111 0.00 0.00 0.00 4.17
114 115 2.045926 CGGAGAAAGCCCCCACAG 60.046 66.667 0.00 0.00 0.00 3.66
116 117 1.002011 GGAGAAAGCCCCCACAGTC 60.002 63.158 0.00 0.00 0.00 3.51
118 119 0.402121 GAGAAAGCCCCCACAGTCTT 59.598 55.000 0.00 0.00 0.00 3.01
121 122 0.178961 AAAGCCCCCACAGTCTTTCC 60.179 55.000 0.00 0.00 0.00 3.13
122 123 1.360393 AAGCCCCCACAGTCTTTCCA 61.360 55.000 0.00 0.00 0.00 3.53
123 124 1.603739 GCCCCCACAGTCTTTCCAC 60.604 63.158 0.00 0.00 0.00 4.02
124 125 1.074951 CCCCCACAGTCTTTCCACC 59.925 63.158 0.00 0.00 0.00 4.61
125 126 1.302511 CCCCACAGTCTTTCCACCG 60.303 63.158 0.00 0.00 0.00 4.94
127 128 0.179029 CCCACAGTCTTTCCACCGTT 60.179 55.000 0.00 0.00 0.00 4.44
128 129 0.944386 CCACAGTCTTTCCACCGTTG 59.056 55.000 0.00 0.00 0.00 4.10
129 130 0.944386 CACAGTCTTTCCACCGTTGG 59.056 55.000 0.00 0.00 45.56 3.77
130 131 0.818040 ACAGTCTTTCCACCGTTGGC 60.818 55.000 0.00 0.00 43.56 4.52
131 132 1.597027 AGTCTTTCCACCGTTGGCG 60.597 57.895 0.00 0.00 43.56 5.69
133 134 1.890041 TCTTTCCACCGTTGGCGTG 60.890 57.895 0.00 0.00 43.56 5.34
134 135 2.124653 TTTCCACCGTTGGCGTGT 60.125 55.556 0.00 0.00 43.56 4.49
135 136 2.387125 CTTTCCACCGTTGGCGTGTG 62.387 60.000 0.00 0.00 43.56 3.82
138 139 3.206246 CACCGTTGGCGTGTGGTT 61.206 61.111 0.00 0.00 36.42 3.67
139 140 3.206246 ACCGTTGGCGTGTGGTTG 61.206 61.111 0.00 0.00 36.15 3.77
140 141 3.206246 CCGTTGGCGTGTGGTTGT 61.206 61.111 0.00 0.00 36.15 3.32
141 142 2.024022 CGTTGGCGTGTGGTTGTG 59.976 61.111 0.00 0.00 0.00 3.33
142 143 2.411290 GTTGGCGTGTGGTTGTGG 59.589 61.111 0.00 0.00 0.00 4.17
143 144 2.115911 GTTGGCGTGTGGTTGTGGA 61.116 57.895 0.00 0.00 0.00 4.02
144 145 1.821759 TTGGCGTGTGGTTGTGGAG 60.822 57.895 0.00 0.00 0.00 3.86
145 146 2.203153 GGCGTGTGGTTGTGGAGT 60.203 61.111 0.00 0.00 0.00 3.85
146 147 2.251642 GGCGTGTGGTTGTGGAGTC 61.252 63.158 0.00 0.00 0.00 3.36
147 148 2.594962 GCGTGTGGTTGTGGAGTCG 61.595 63.158 0.00 0.00 0.00 4.18
148 149 1.954146 CGTGTGGTTGTGGAGTCGG 60.954 63.158 0.00 0.00 0.00 4.79
150 151 0.878961 GTGTGGTTGTGGAGTCGGAC 60.879 60.000 0.00 0.00 0.00 4.79
151 152 1.301479 GTGGTTGTGGAGTCGGACC 60.301 63.158 4.14 0.00 0.00 4.46
152 153 1.458777 TGGTTGTGGAGTCGGACCT 60.459 57.895 4.14 0.00 0.00 3.85
173 174 3.197790 CCGTGGCCAAGCTCGATG 61.198 66.667 7.24 0.00 0.00 3.84
174 175 2.125552 CGTGGCCAAGCTCGATGA 60.126 61.111 7.24 0.00 0.00 2.92
176 177 2.125552 TGGCCAAGCTCGATGACG 60.126 61.111 0.61 0.00 41.26 4.35
178 179 3.567797 GCCAAGCTCGATGACGGC 61.568 66.667 0.00 0.97 40.21 5.68
179 180 2.892425 CCAAGCTCGATGACGGCC 60.892 66.667 0.00 0.00 40.21 6.13
181 182 4.514577 AAGCTCGATGACGGCCCG 62.515 66.667 0.00 0.00 40.21 6.13
187 188 2.421739 GATGACGGCCCGCTGTAT 59.578 61.111 1.23 0.00 35.39 2.29
188 189 1.664965 GATGACGGCCCGCTGTATC 60.665 63.158 1.23 0.00 35.39 2.24
189 190 3.165160 ATGACGGCCCGCTGTATCC 62.165 63.158 1.23 0.00 35.39 2.59
199 200 4.647615 CTGTATCCGCGCGGGGAG 62.648 72.222 44.95 30.03 40.02 4.30
202 203 3.371063 TATCCGCGCGGGGAGATC 61.371 66.667 44.95 9.31 40.02 2.75
207 208 4.241555 GCGCGGGGAGATCATGGT 62.242 66.667 8.83 0.00 0.00 3.55
208 209 2.280389 CGCGGGGAGATCATGGTG 60.280 66.667 0.00 0.00 0.00 4.17
209 210 2.796193 CGCGGGGAGATCATGGTGA 61.796 63.158 0.00 0.00 0.00 4.02
210 211 1.227674 GCGGGGAGATCATGGTGAC 60.228 63.158 0.00 0.00 0.00 3.67
211 212 1.068083 CGGGGAGATCATGGTGACG 59.932 63.158 0.00 0.00 0.00 4.35
213 214 0.390860 GGGGAGATCATGGTGACGAG 59.609 60.000 0.00 0.00 0.00 4.18
215 216 1.967066 GGGAGATCATGGTGACGAGAT 59.033 52.381 0.00 0.00 0.00 2.75
216 217 2.366916 GGGAGATCATGGTGACGAGATT 59.633 50.000 0.00 0.00 0.00 2.40
217 218 3.553922 GGGAGATCATGGTGACGAGATTC 60.554 52.174 0.00 0.00 0.00 2.52
218 219 3.553922 GGAGATCATGGTGACGAGATTCC 60.554 52.174 0.00 0.00 0.00 3.01
219 220 3.303938 AGATCATGGTGACGAGATTCCT 58.696 45.455 0.00 0.00 0.00 3.36
220 221 3.320541 AGATCATGGTGACGAGATTCCTC 59.679 47.826 0.00 0.00 36.08 3.71
229 230 2.501492 GAGATTCCTCGTTCCGGGA 58.499 57.895 0.00 0.00 0.00 5.14
230 231 0.822164 GAGATTCCTCGTTCCGGGAA 59.178 55.000 5.09 5.09 44.37 3.97
231 232 0.824759 AGATTCCTCGTTCCGGGAAG 59.175 55.000 10.35 4.88 43.64 3.46
232 233 0.179081 GATTCCTCGTTCCGGGAAGG 60.179 60.000 20.62 20.62 43.64 3.46
234 235 1.538687 TTCCTCGTTCCGGGAAGGTC 61.539 60.000 24.24 7.46 41.99 3.85
235 236 2.181021 CTCGTTCCGGGAAGGTCG 59.819 66.667 24.24 17.74 41.99 4.79
236 237 3.984200 CTCGTTCCGGGAAGGTCGC 62.984 68.421 24.24 6.78 41.99 5.19
238 239 2.031465 GTTCCGGGAAGGTCGCAA 59.969 61.111 10.35 0.00 41.99 4.85
240 241 3.540367 TTCCGGGAAGGTCGCAACC 62.540 63.158 5.09 0.00 46.87 3.77
248 249 2.644992 GGTCGCAACCAAAGGCTG 59.355 61.111 0.00 0.00 45.68 4.85
258 259 2.952714 CAAAGGCTGGAGGAGGTTG 58.047 57.895 0.00 0.00 0.00 3.77
259 260 0.610232 CAAAGGCTGGAGGAGGTTGG 60.610 60.000 0.00 0.00 0.00 3.77
260 261 1.793820 AAAGGCTGGAGGAGGTTGGG 61.794 60.000 0.00 0.00 0.00 4.12
262 263 3.334054 GCTGGAGGAGGTTGGGCT 61.334 66.667 0.00 0.00 0.00 5.19
263 264 2.993853 CTGGAGGAGGTTGGGCTC 59.006 66.667 0.00 0.00 0.00 4.70
264 265 3.003173 TGGAGGAGGTTGGGCTCG 61.003 66.667 0.00 0.00 0.00 5.03
265 266 3.787001 GGAGGAGGTTGGGCTCGG 61.787 72.222 0.00 0.00 0.00 4.63
266 267 3.787001 GAGGAGGTTGGGCTCGGG 61.787 72.222 0.00 0.00 0.00 5.14
267 268 4.332543 AGGAGGTTGGGCTCGGGA 62.333 66.667 0.00 0.00 0.00 5.14
268 269 4.097361 GGAGGTTGGGCTCGGGAC 62.097 72.222 0.00 0.00 0.00 4.46
269 270 3.319198 GAGGTTGGGCTCGGGACA 61.319 66.667 0.00 0.00 0.00 4.02
270 271 3.316573 GAGGTTGGGCTCGGGACAG 62.317 68.421 0.00 0.00 0.00 3.51
271 272 4.410400 GGTTGGGCTCGGGACAGG 62.410 72.222 0.00 0.00 0.00 4.00
272 273 3.319198 GTTGGGCTCGGGACAGGA 61.319 66.667 0.00 0.00 0.00 3.86
273 274 3.003173 TTGGGCTCGGGACAGGAG 61.003 66.667 0.00 0.00 34.62 3.69
274 275 3.539593 TTGGGCTCGGGACAGGAGA 62.540 63.158 0.00 0.00 33.27 3.71
275 276 2.444895 GGGCTCGGGACAGGAGAT 60.445 66.667 0.00 0.00 33.27 2.75
276 277 2.801631 GGGCTCGGGACAGGAGATG 61.802 68.421 0.00 0.00 33.27 2.90
277 278 2.801631 GGCTCGGGACAGGAGATGG 61.802 68.421 0.00 0.00 33.27 3.51
278 279 1.758514 GCTCGGGACAGGAGATGGA 60.759 63.158 0.00 0.00 33.27 3.41
279 280 1.743321 GCTCGGGACAGGAGATGGAG 61.743 65.000 0.00 0.00 33.27 3.86
282 283 1.112315 CGGGACAGGAGATGGAGAGG 61.112 65.000 0.00 0.00 0.00 3.69
283 284 0.762461 GGGACAGGAGATGGAGAGGG 60.762 65.000 0.00 0.00 0.00 4.30
284 285 0.263172 GGACAGGAGATGGAGAGGGA 59.737 60.000 0.00 0.00 0.00 4.20
285 286 1.343478 GGACAGGAGATGGAGAGGGAA 60.343 57.143 0.00 0.00 0.00 3.97
286 287 1.760029 GACAGGAGATGGAGAGGGAAC 59.240 57.143 0.00 0.00 0.00 3.62
287 288 0.749649 CAGGAGATGGAGAGGGAACG 59.250 60.000 0.00 0.00 0.00 3.95
290 291 1.036707 GAGATGGAGAGGGAACGAGG 58.963 60.000 0.00 0.00 0.00 4.63
291 292 0.397816 AGATGGAGAGGGAACGAGGG 60.398 60.000 0.00 0.00 0.00 4.30
292 293 2.034048 GATGGAGAGGGAACGAGGGC 62.034 65.000 0.00 0.00 0.00 5.19
293 294 3.839432 GGAGAGGGAACGAGGGCG 61.839 72.222 0.00 0.00 44.79 6.13
317 318 1.068585 GGCGACGGTAACCCTATGG 59.931 63.158 0.00 0.00 37.80 2.74
334 335 5.193099 CTATGGGAGGAAAAGGAAAAGGA 57.807 43.478 0.00 0.00 0.00 3.36
336 337 2.110011 TGGGAGGAAAAGGAAAAGGAGG 59.890 50.000 0.00 0.00 0.00 4.30
337 338 2.557676 GGGAGGAAAAGGAAAAGGAGGG 60.558 54.545 0.00 0.00 0.00 4.30
338 339 2.378886 GGAGGAAAAGGAAAAGGAGGGA 59.621 50.000 0.00 0.00 0.00 4.20
339 340 3.422796 GAGGAAAAGGAAAAGGAGGGAC 58.577 50.000 0.00 0.00 0.00 4.46
340 341 2.160205 GGAAAAGGAAAAGGAGGGACG 58.840 52.381 0.00 0.00 0.00 4.79
341 342 1.540267 GAAAAGGAAAAGGAGGGACGC 59.460 52.381 0.00 0.00 0.00 5.19
342 343 0.771755 AAAGGAAAAGGAGGGACGCT 59.228 50.000 0.00 0.00 0.00 5.07
343 344 0.771755 AAGGAAAAGGAGGGACGCTT 59.228 50.000 0.00 0.00 0.00 4.68
344 345 0.325272 AGGAAAAGGAGGGACGCTTC 59.675 55.000 0.00 0.00 0.00 3.86
345 346 1.019805 GGAAAAGGAGGGACGCTTCG 61.020 60.000 0.00 0.00 0.00 3.79
346 347 1.003718 AAAAGGAGGGACGCTTCGG 60.004 57.895 0.00 0.00 0.00 4.30
347 348 1.765597 AAAAGGAGGGACGCTTCGGT 61.766 55.000 0.00 0.00 0.00 4.69
348 349 2.450479 AAAGGAGGGACGCTTCGGTG 62.450 60.000 0.00 0.00 0.00 4.94
362 363 3.706373 GGTGCGAAGGGAGGCTGA 61.706 66.667 0.00 0.00 0.00 4.26
363 364 2.125350 GTGCGAAGGGAGGCTGAG 60.125 66.667 0.00 0.00 0.00 3.35
364 365 4.087892 TGCGAAGGGAGGCTGAGC 62.088 66.667 0.00 0.00 0.00 4.26
365 366 4.087892 GCGAAGGGAGGCTGAGCA 62.088 66.667 6.82 0.00 0.00 4.26
366 367 2.125350 CGAAGGGAGGCTGAGCAC 60.125 66.667 6.82 0.00 0.00 4.40
367 368 2.654079 CGAAGGGAGGCTGAGCACT 61.654 63.158 6.82 0.14 0.00 4.40
368 369 1.682257 GAAGGGAGGCTGAGCACTT 59.318 57.895 6.82 4.68 0.00 3.16
369 370 0.676151 GAAGGGAGGCTGAGCACTTG 60.676 60.000 6.82 0.00 0.00 3.16
370 371 1.422161 AAGGGAGGCTGAGCACTTGT 61.422 55.000 6.82 0.00 0.00 3.16
372 373 0.538287 GGGAGGCTGAGCACTTGTTT 60.538 55.000 6.82 0.00 0.00 2.83
374 375 1.683385 GGAGGCTGAGCACTTGTTTTT 59.317 47.619 6.82 0.00 0.00 1.94
375 376 2.544486 GGAGGCTGAGCACTTGTTTTTG 60.544 50.000 6.82 0.00 0.00 2.44
377 378 2.497273 AGGCTGAGCACTTGTTTTTGTT 59.503 40.909 6.82 0.00 0.00 2.83
379 380 3.306973 GGCTGAGCACTTGTTTTTGTTTC 59.693 43.478 6.82 0.00 0.00 2.78
380 381 4.176271 GCTGAGCACTTGTTTTTGTTTCT 58.824 39.130 0.00 0.00 0.00 2.52
382 383 5.643379 TGAGCACTTGTTTTTGTTTCTCT 57.357 34.783 0.00 0.00 0.00 3.10
383 384 5.640732 TGAGCACTTGTTTTTGTTTCTCTC 58.359 37.500 0.00 0.00 0.00 3.20
384 385 5.182950 TGAGCACTTGTTTTTGTTTCTCTCA 59.817 36.000 0.00 0.00 0.00 3.27
385 386 6.024552 AGCACTTGTTTTTGTTTCTCTCAA 57.975 33.333 0.00 0.00 0.00 3.02
387 388 6.753744 AGCACTTGTTTTTGTTTCTCTCAATC 59.246 34.615 0.00 0.00 0.00 2.67
388 389 6.291269 GCACTTGTTTTTGTTTCTCTCAATCG 60.291 38.462 0.00 0.00 0.00 3.34
389 390 6.197096 CACTTGTTTTTGTTTCTCTCAATCGG 59.803 38.462 0.00 0.00 0.00 4.18
392 393 6.721321 TGTTTTTGTTTCTCTCAATCGGTAC 58.279 36.000 0.00 0.00 0.00 3.34
393 394 6.316640 TGTTTTTGTTTCTCTCAATCGGTACA 59.683 34.615 0.00 0.00 0.00 2.90
394 395 6.539649 TTTTGTTTCTCTCAATCGGTACAG 57.460 37.500 0.00 0.00 0.00 2.74
396 397 5.970317 TGTTTCTCTCAATCGGTACAGTA 57.030 39.130 0.00 0.00 0.00 2.74
399 400 7.383687 TGTTTCTCTCAATCGGTACAGTAAAT 58.616 34.615 0.00 0.00 0.00 1.40
400 401 7.544566 TGTTTCTCTCAATCGGTACAGTAAATC 59.455 37.037 0.00 0.00 0.00 2.17
402 403 4.357142 TCTCAATCGGTACAGTAAATCGC 58.643 43.478 0.00 0.00 0.00 4.58
403 404 3.450578 TCAATCGGTACAGTAAATCGCC 58.549 45.455 0.00 0.00 0.00 5.54
406 407 1.545136 TCGGTACAGTAAATCGCCACA 59.455 47.619 0.00 0.00 0.00 4.17
407 408 1.924524 CGGTACAGTAAATCGCCACAG 59.075 52.381 0.00 0.00 0.00 3.66
409 410 2.671396 GGTACAGTAAATCGCCACAGTG 59.329 50.000 0.00 0.00 0.00 3.66
410 411 2.831685 ACAGTAAATCGCCACAGTGA 57.168 45.000 0.62 0.00 36.82 3.41
412 413 3.472652 ACAGTAAATCGCCACAGTGAAA 58.527 40.909 0.62 0.00 35.78 2.69
413 414 3.880490 ACAGTAAATCGCCACAGTGAAAA 59.120 39.130 0.62 0.00 35.78 2.29
414 415 4.518970 ACAGTAAATCGCCACAGTGAAAAT 59.481 37.500 0.62 0.00 35.78 1.82
417 418 0.447801 ATCGCCACAGTGAAAATCGC 59.552 50.000 0.62 0.00 35.78 4.58
418 419 1.509787 CGCCACAGTGAAAATCGCG 60.510 57.895 0.00 0.00 30.95 5.87
420 421 1.573829 GCCACAGTGAAAATCGCGGA 61.574 55.000 6.13 0.00 30.95 5.54
422 423 0.179250 CACAGTGAAAATCGCGGACG 60.179 55.000 6.13 0.00 42.01 4.79
423 424 0.599204 ACAGTGAAAATCGCGGACGT 60.599 50.000 6.13 0.00 41.18 4.34
425 426 1.131826 GTGAAAATCGCGGACGTGG 59.868 57.895 6.13 0.00 41.18 4.94
427 428 2.358247 AAAATCGCGGACGTGGCT 60.358 55.556 6.13 0.00 41.18 4.75
428 429 1.079681 AAAATCGCGGACGTGGCTA 60.080 52.632 6.13 0.00 41.18 3.93
429 430 0.461339 AAAATCGCGGACGTGGCTAT 60.461 50.000 6.13 0.00 41.18 2.97
431 432 3.538028 ATCGCGGACGTGGCTATCG 62.538 63.158 6.13 0.00 41.18 2.92
448 449 3.805267 GCGAGAGGGAGCACATTG 58.195 61.111 0.00 0.00 0.00 2.82
450 451 1.364626 GCGAGAGGGAGCACATTGTG 61.365 60.000 12.54 12.54 36.51 3.33
465 466 3.927758 ACATTGTGCGTACGTTAATGCTA 59.072 39.130 26.18 9.03 33.28 3.49
466 467 4.569162 ACATTGTGCGTACGTTAATGCTAT 59.431 37.500 26.18 14.05 33.28 2.97
468 469 6.256104 ACATTGTGCGTACGTTAATGCTATTA 59.744 34.615 26.18 3.60 33.28 0.98
470 471 6.831727 TGTGCGTACGTTAATGCTATTAAT 57.168 33.333 17.90 0.00 32.39 1.40
471 472 7.236674 TGTGCGTACGTTAATGCTATTAATT 57.763 32.000 17.90 0.00 32.39 1.40
472 473 8.350238 TGTGCGTACGTTAATGCTATTAATTA 57.650 30.769 17.90 0.00 32.39 1.40
473 474 8.815189 TGTGCGTACGTTAATGCTATTAATTAA 58.185 29.630 17.90 0.00 32.39 1.40
474 475 9.801714 GTGCGTACGTTAATGCTATTAATTAAT 57.198 29.630 17.90 14.86 33.35 1.40
475 476 9.800299 TGCGTACGTTAATGCTATTAATTAATG 57.200 29.630 18.98 10.84 40.21 1.90
477 478 9.257865 CGTACGTTAATGCTATTAATTAATGGC 57.742 33.333 29.58 29.58 46.40 4.40
481 482 7.754924 CGTTAATGCTATTAATTAATGGCTGGG 59.245 37.037 33.15 19.17 46.38 4.45
482 483 8.585018 GTTAATGCTATTAATTAATGGCTGGGT 58.415 33.333 33.15 22.28 46.38 4.51
483 484 6.594788 ATGCTATTAATTAATGGCTGGGTG 57.405 37.500 33.15 11.98 46.38 4.61
484 485 5.700183 TGCTATTAATTAATGGCTGGGTGA 58.300 37.500 33.15 18.04 46.38 4.02
485 486 5.534654 TGCTATTAATTAATGGCTGGGTGAC 59.465 40.000 33.15 13.33 46.38 3.67
487 488 6.940298 GCTATTAATTAATGGCTGGGTGACTA 59.060 38.462 29.21 4.38 43.93 2.59
488 489 7.094762 GCTATTAATTAATGGCTGGGTGACTAC 60.095 40.741 29.21 5.76 43.93 2.73
490 491 4.584638 ATTAATGGCTGGGTGACTACAA 57.415 40.909 0.00 0.00 0.00 2.41
491 492 2.496899 AATGGCTGGGTGACTACAAG 57.503 50.000 0.00 0.00 0.00 3.16
492 493 1.362224 ATGGCTGGGTGACTACAAGT 58.638 50.000 0.00 0.00 0.00 3.16
493 494 1.136828 TGGCTGGGTGACTACAAGTT 58.863 50.000 0.00 0.00 0.00 2.66
494 495 1.493022 TGGCTGGGTGACTACAAGTTT 59.507 47.619 0.00 0.00 0.00 2.66
495 496 2.152016 GGCTGGGTGACTACAAGTTTC 58.848 52.381 0.00 0.00 0.00 2.78
497 498 2.808543 GCTGGGTGACTACAAGTTTCAG 59.191 50.000 0.00 0.00 0.00 3.02
499 500 2.152016 GGGTGACTACAAGTTTCAGGC 58.848 52.381 0.00 0.00 0.00 4.85
500 501 2.152016 GGTGACTACAAGTTTCAGGCC 58.848 52.381 0.00 0.00 0.00 5.19
501 502 2.486548 GGTGACTACAAGTTTCAGGCCA 60.487 50.000 5.01 0.00 0.00 5.36
502 503 2.548480 GTGACTACAAGTTTCAGGCCAC 59.452 50.000 5.01 0.00 0.00 5.01
503 504 2.438021 TGACTACAAGTTTCAGGCCACT 59.562 45.455 5.01 0.00 0.00 4.00
508 509 2.736670 AAGTTTCAGGCCACTTGACT 57.263 45.000 5.01 0.00 31.80 3.41
509 510 2.262423 AGTTTCAGGCCACTTGACTC 57.738 50.000 5.01 0.00 0.00 3.36
510 511 1.202818 AGTTTCAGGCCACTTGACTCC 60.203 52.381 5.01 0.00 0.00 3.85
511 512 0.843309 TTTCAGGCCACTTGACTCCA 59.157 50.000 5.01 0.00 0.00 3.86
512 513 0.108585 TTCAGGCCACTTGACTCCAC 59.891 55.000 5.01 0.00 0.00 4.02
513 514 0.764369 TCAGGCCACTTGACTCCACT 60.764 55.000 5.01 0.00 0.00 4.00
514 515 0.321122 CAGGCCACTTGACTCCACTC 60.321 60.000 5.01 0.00 0.00 3.51
518 519 1.606737 GCCACTTGACTCCACTCTGAC 60.607 57.143 0.00 0.00 0.00 3.51
520 521 3.157881 CCACTTGACTCCACTCTGACTA 58.842 50.000 0.00 0.00 0.00 2.59
522 523 4.075682 CACTTGACTCCACTCTGACTAGA 58.924 47.826 0.00 0.00 0.00 2.43
523 524 4.520874 CACTTGACTCCACTCTGACTAGAA 59.479 45.833 0.00 0.00 31.21 2.10
524 525 4.764823 ACTTGACTCCACTCTGACTAGAAG 59.235 45.833 0.00 0.00 31.21 2.85
526 527 5.186256 TGACTCCACTCTGACTAGAAGAT 57.814 43.478 0.00 0.00 31.21 2.40
527 528 6.314899 TGACTCCACTCTGACTAGAAGATA 57.685 41.667 0.00 0.00 31.21 1.98
528 529 6.905736 TGACTCCACTCTGACTAGAAGATAT 58.094 40.000 0.00 0.00 31.21 1.63
529 530 6.770303 TGACTCCACTCTGACTAGAAGATATG 59.230 42.308 0.00 1.45 31.21 1.78
530 531 6.905736 ACTCCACTCTGACTAGAAGATATGA 58.094 40.000 0.00 0.00 31.21 2.15
577 578 1.821136 GGGCCAACAATTTCTCTCTGG 59.179 52.381 4.39 0.00 0.00 3.86
608 609 1.814793 TTGCGGCTGTTAGCAATGTA 58.185 45.000 0.00 0.00 46.83 2.29
609 610 2.036958 TGCGGCTGTTAGCAATGTAT 57.963 45.000 0.00 0.00 44.75 2.29
610 611 2.364632 TGCGGCTGTTAGCAATGTATT 58.635 42.857 0.00 0.00 44.75 1.89
612 613 4.133820 TGCGGCTGTTAGCAATGTATTAT 58.866 39.130 0.00 0.00 44.75 1.28
614 615 4.666655 GCGGCTGTTAGCAATGTATTATCG 60.667 45.833 2.99 0.00 44.75 2.92
615 616 4.666655 CGGCTGTTAGCAATGTATTATCGC 60.667 45.833 2.99 0.00 44.75 4.58
617 618 4.383774 TGTTAGCAATGTATTATCGCGC 57.616 40.909 0.00 0.00 0.00 6.86
641 642 6.630863 GCAATGGATGAAAAGAAATGGATCCA 60.631 38.462 18.88 18.88 42.64 3.41
664 665 0.847758 AAGGTCCGGGGGTATGGTTT 60.848 55.000 0.00 0.00 0.00 3.27
710 711 7.342541 AGAAATAGGAAGGACTTGTACTACTCC 59.657 40.741 0.00 0.00 0.00 3.85
714 715 5.011840 AGGAAGGACTTGTACTACTCCAAAC 59.988 44.000 6.52 0.00 0.00 2.93
814 816 1.620822 AATGAAAGCAAACGGGAGCT 58.379 45.000 0.00 0.00 44.31 4.09
819 821 1.391157 AAGCAAACGGGAGCTGCAAA 61.391 50.000 7.79 0.00 42.58 3.68
827 829 1.747355 CGGGAGCTGCAAATTTCAGAT 59.253 47.619 7.79 12.54 33.54 2.90
987 1036 2.989571 AGACAAACCTCTCCCAAATCCT 59.010 45.455 0.00 0.00 0.00 3.24
996 1045 0.619255 TCCCAAATCCTAGTCGCCCA 60.619 55.000 0.00 0.00 0.00 5.36
1651 1743 3.295273 CCGCCGATCCTCATCCGA 61.295 66.667 0.00 0.00 0.00 4.55
2064 4774 1.451504 CACTGGAGCCAACACTGGA 59.548 57.895 0.00 0.00 46.92 3.86
2110 4820 0.912486 GTACCTGGATGCCTTGGACT 59.088 55.000 0.00 0.00 0.00 3.85
2121 4831 2.460330 CTTGGACTAAGGCGTGCTG 58.540 57.895 0.00 0.00 32.56 4.41
2122 4832 1.003839 TTGGACTAAGGCGTGCTGG 60.004 57.895 0.00 0.00 0.00 4.85
2123 4833 1.476845 TTGGACTAAGGCGTGCTGGA 61.477 55.000 0.00 0.00 0.00 3.86
2124 4834 1.153549 GGACTAAGGCGTGCTGGAG 60.154 63.158 0.00 0.00 0.00 3.86
2125 4835 1.153549 GACTAAGGCGTGCTGGAGG 60.154 63.158 0.00 0.00 0.00 4.30
2126 4836 2.187946 CTAAGGCGTGCTGGAGGG 59.812 66.667 0.00 0.00 0.00 4.30
2127 4837 2.606519 TAAGGCGTGCTGGAGGGT 60.607 61.111 0.00 0.00 0.00 4.34
2128 4838 1.305465 TAAGGCGTGCTGGAGGGTA 60.305 57.895 0.00 0.00 0.00 3.69
2129 4839 0.689745 TAAGGCGTGCTGGAGGGTAT 60.690 55.000 0.00 0.00 0.00 2.73
2130 4840 2.203070 GGCGTGCTGGAGGGTATG 60.203 66.667 0.00 0.00 0.00 2.39
2131 4841 2.897350 GCGTGCTGGAGGGTATGC 60.897 66.667 0.00 0.00 0.00 3.14
2172 4936 3.552875 CTTCCATGATGCTGACAAGGAT 58.447 45.455 0.00 0.00 35.55 3.24
2185 4949 6.382859 TGCTGACAAGGATAAGAGGTACAATA 59.617 38.462 0.00 0.00 0.00 1.90
2536 5310 2.498167 TGTTCTTCTTCTTGCTCCTGC 58.502 47.619 0.00 0.00 40.20 4.85
2552 5326 4.297510 CTCCTGCTATCGATGTTCTGAAG 58.702 47.826 8.54 0.00 0.00 3.02
2589 5680 2.795175 GCATGCTGCAGCTCATATTT 57.205 45.000 36.61 11.88 44.26 1.40
2590 5681 3.909776 GCATGCTGCAGCTCATATTTA 57.090 42.857 36.61 16.61 44.26 1.40
2591 5682 4.436242 GCATGCTGCAGCTCATATTTAT 57.564 40.909 36.61 18.17 44.26 1.40
2592 5683 4.806330 GCATGCTGCAGCTCATATTTATT 58.194 39.130 36.61 8.09 44.26 1.40
2593 5684 5.227908 GCATGCTGCAGCTCATATTTATTT 58.772 37.500 36.61 0.00 44.26 1.40
2594 5685 5.345202 GCATGCTGCAGCTCATATTTATTTC 59.655 40.000 36.61 11.37 44.26 2.17
2595 5686 5.099484 TGCTGCAGCTCATATTTATTTCG 57.901 39.130 36.61 0.00 42.66 3.46
2596 5687 3.910767 GCTGCAGCTCATATTTATTTCGC 59.089 43.478 31.33 0.00 38.21 4.70
2597 5688 4.320057 GCTGCAGCTCATATTTATTTCGCT 60.320 41.667 31.33 0.00 38.21 4.93
2613 5704 3.223423 TCGCTTAGTTTCTCTCAGCTG 57.777 47.619 7.63 7.63 40.19 4.24
2633 5724 4.436986 GCTGCAAACTTCGTAATTACTCCC 60.437 45.833 13.56 0.00 0.00 4.30
2637 5728 4.382345 AACTTCGTAATTACTCCCTCCG 57.618 45.455 13.56 0.00 0.00 4.63
2638 5729 3.359950 ACTTCGTAATTACTCCCTCCGT 58.640 45.455 13.56 0.00 0.00 4.69
2639 5730 3.379688 ACTTCGTAATTACTCCCTCCGTC 59.620 47.826 13.56 0.00 0.00 4.79
2640 5731 1.942657 TCGTAATTACTCCCTCCGTCG 59.057 52.381 13.56 0.00 0.00 5.12
2641 5732 1.598924 CGTAATTACTCCCTCCGTCGC 60.599 57.143 13.56 0.00 0.00 5.19
2642 5733 1.406539 GTAATTACTCCCTCCGTCGCA 59.593 52.381 8.41 0.00 0.00 5.10
2643 5734 0.899720 AATTACTCCCTCCGTCGCAA 59.100 50.000 0.00 0.00 0.00 4.85
2644 5735 0.899720 ATTACTCCCTCCGTCGCAAA 59.100 50.000 0.00 0.00 0.00 3.68
2645 5736 0.680618 TTACTCCCTCCGTCGCAAAA 59.319 50.000 0.00 0.00 0.00 2.44
2646 5737 0.899720 TACTCCCTCCGTCGCAAAAT 59.100 50.000 0.00 0.00 0.00 1.82
2647 5738 0.899720 ACTCCCTCCGTCGCAAAATA 59.100 50.000 0.00 0.00 0.00 1.40
2648 5739 1.485066 ACTCCCTCCGTCGCAAAATAT 59.515 47.619 0.00 0.00 0.00 1.28
2649 5740 2.696707 ACTCCCTCCGTCGCAAAATATA 59.303 45.455 0.00 0.00 0.00 0.86
2650 5741 3.133362 ACTCCCTCCGTCGCAAAATATAA 59.867 43.478 0.00 0.00 0.00 0.98
2651 5742 4.124238 CTCCCTCCGTCGCAAAATATAAA 58.876 43.478 0.00 0.00 0.00 1.40
2652 5743 4.515361 TCCCTCCGTCGCAAAATATAAAA 58.485 39.130 0.00 0.00 0.00 1.52
2653 5744 4.942483 TCCCTCCGTCGCAAAATATAAAAA 59.058 37.500 0.00 0.00 0.00 1.94
2654 5745 5.032220 CCCTCCGTCGCAAAATATAAAAAC 58.968 41.667 0.00 0.00 0.00 2.43
2655 5746 5.392165 CCCTCCGTCGCAAAATATAAAAACA 60.392 40.000 0.00 0.00 0.00 2.83
2656 5747 6.262601 CCTCCGTCGCAAAATATAAAAACAT 58.737 36.000 0.00 0.00 0.00 2.71
2657 5748 6.750039 CCTCCGTCGCAAAATATAAAAACATT 59.250 34.615 0.00 0.00 0.00 2.71
2658 5749 7.274686 CCTCCGTCGCAAAATATAAAAACATTT 59.725 33.333 0.00 0.00 0.00 2.32
2659 5750 8.522178 TCCGTCGCAAAATATAAAAACATTTT 57.478 26.923 0.00 0.00 35.30 1.82
2660 5751 8.979574 TCCGTCGCAAAATATAAAAACATTTTT 58.020 25.926 7.44 7.44 42.51 1.94
2661 5752 9.245284 CCGTCGCAAAATATAAAAACATTTTTC 57.755 29.630 5.63 0.00 40.53 2.29
2662 5753 9.784824 CGTCGCAAAATATAAAAACATTTTTCA 57.215 25.926 5.63 0.00 40.53 2.69
2671 5762 5.816449 AAAAACATTTTTCAAGCTGTGGG 57.184 34.783 0.00 0.00 35.61 4.61
2672 5763 4.751767 AAACATTTTTCAAGCTGTGGGA 57.248 36.364 0.00 0.00 0.00 4.37
2673 5764 3.733443 ACATTTTTCAAGCTGTGGGAC 57.267 42.857 0.00 0.00 0.00 4.46
2674 5765 2.034558 ACATTTTTCAAGCTGTGGGACG 59.965 45.455 0.00 0.00 0.00 4.79
2675 5766 2.045561 TTTTTCAAGCTGTGGGACGA 57.954 45.000 0.00 0.00 0.00 4.20
2676 5767 1.593196 TTTTCAAGCTGTGGGACGAG 58.407 50.000 0.00 0.00 0.00 4.18
2677 5768 0.250295 TTTCAAGCTGTGGGACGAGG 60.250 55.000 0.00 0.00 0.00 4.63
2678 5769 2.046892 CAAGCTGTGGGACGAGGG 60.047 66.667 0.00 0.00 0.00 4.30
2679 5770 2.203788 AAGCTGTGGGACGAGGGA 60.204 61.111 0.00 0.00 0.00 4.20
2680 5771 2.286523 AAGCTGTGGGACGAGGGAG 61.287 63.158 0.00 0.00 0.00 4.30
2718 6687 8.124808 TCATGATTCTGGTCAATTTTTCATGA 57.875 30.769 7.88 7.88 43.37 3.07
2749 6718 5.885912 ACTAAGCTTTGGTTCAGTTCTTTCA 59.114 36.000 3.20 0.00 0.00 2.69
2813 6783 7.437267 CGTTTTTAGTGAGGTTTTCTCTCTACA 59.563 37.037 4.83 0.00 43.89 2.74
2821 6791 6.990349 TGAGGTTTTCTCTCTACAATCGTTTT 59.010 34.615 0.00 0.00 42.86 2.43
2823 6793 6.990349 AGGTTTTCTCTCTACAATCGTTTTGA 59.010 34.615 7.65 0.00 0.00 2.69
2842 6812 7.255569 GTTTTGACAAACTTAGGCAAGTACTT 58.744 34.615 1.12 1.12 44.41 2.24
2851 6821 0.782384 GGCAAGTACTTCGACGTGTG 59.218 55.000 4.77 1.78 32.19 3.82
2860 6830 1.781429 CTTCGACGTGTGTCAACTCTG 59.219 52.381 0.00 0.00 45.80 3.35
2878 6848 7.502226 TCAACTCTGACTTGAAAACATAATGGT 59.498 33.333 0.00 0.00 0.00 3.55
2903 6873 7.793927 AGTTAAGAACAGAAGACCTTTTCAG 57.206 36.000 0.00 0.00 34.76 3.02
2939 6909 7.416964 AAAAATAATGGTACTTAGCCATGCA 57.583 32.000 0.00 0.00 45.21 3.96
3032 7002 7.442656 TCTGAAGTAAAAGAGAACCAGGTAAG 58.557 38.462 0.00 0.00 0.00 2.34
3212 7184 2.165641 AGAACAGATGTACAATCCGCGA 59.834 45.455 8.23 0.00 0.00 5.87
3369 7341 5.317733 ACAGATTTTTCACACGGAACAAA 57.682 34.783 0.00 0.00 34.56 2.83
3385 7357 5.504010 CGGAACAAATAGAAATGGGATGTCG 60.504 44.000 0.00 0.00 0.00 4.35
3520 7492 0.637743 AGGGAAGGAGGGAGGTAGTC 59.362 60.000 0.00 0.00 0.00 2.59
3524 7496 2.380941 GAAGGAGGGAGGTAGTCTGTC 58.619 57.143 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.532573 TCCATCAAGCTCTGACGTCC 59.467 55.000 14.12 0.00 36.69 4.79
1 2 1.474478 TCTCCATCAAGCTCTGACGTC 59.526 52.381 9.11 9.11 36.69 4.34
2 3 1.550327 TCTCCATCAAGCTCTGACGT 58.450 50.000 0.00 0.00 36.69 4.34
4 5 3.883830 TCTTCTCCATCAAGCTCTGAC 57.116 47.619 0.00 0.00 36.69 3.51
5 6 3.837146 ACTTCTTCTCCATCAAGCTCTGA 59.163 43.478 0.00 0.00 38.81 3.27
9 10 4.142271 CGTCTACTTCTTCTCCATCAAGCT 60.142 45.833 0.00 0.00 0.00 3.74
10 11 4.109050 CGTCTACTTCTTCTCCATCAAGC 58.891 47.826 0.00 0.00 0.00 4.01
11 12 4.440802 CCCGTCTACTTCTTCTCCATCAAG 60.441 50.000 0.00 0.00 0.00 3.02
12 13 3.447586 CCCGTCTACTTCTTCTCCATCAA 59.552 47.826 0.00 0.00 0.00 2.57
13 14 3.024547 CCCGTCTACTTCTTCTCCATCA 58.975 50.000 0.00 0.00 0.00 3.07
14 15 2.362717 CCCCGTCTACTTCTTCTCCATC 59.637 54.545 0.00 0.00 0.00 3.51
15 16 2.024273 TCCCCGTCTACTTCTTCTCCAT 60.024 50.000 0.00 0.00 0.00 3.41
16 17 1.356738 TCCCCGTCTACTTCTTCTCCA 59.643 52.381 0.00 0.00 0.00 3.86
18 19 1.750206 GGTCCCCGTCTACTTCTTCTC 59.250 57.143 0.00 0.00 0.00 2.87
19 20 1.849977 GGTCCCCGTCTACTTCTTCT 58.150 55.000 0.00 0.00 0.00 2.85
20 21 0.455005 CGGTCCCCGTCTACTTCTTC 59.545 60.000 0.00 0.00 42.73 2.87
21 22 0.969409 CCGGTCCCCGTCTACTTCTT 60.969 60.000 0.00 0.00 46.80 2.52
22 23 1.379576 CCGGTCCCCGTCTACTTCT 60.380 63.158 0.00 0.00 46.80 2.85
23 24 2.421399 CCCGGTCCCCGTCTACTTC 61.421 68.421 0.00 0.00 46.80 3.01
24 25 2.363406 CCCGGTCCCCGTCTACTT 60.363 66.667 0.00 0.00 46.80 2.24
25 26 4.453892 CCCCGGTCCCCGTCTACT 62.454 72.222 0.00 0.00 46.80 2.57
45 46 4.431131 ATGGAGCGGCAACAGGGG 62.431 66.667 1.45 0.00 0.00 4.79
47 48 3.136123 CCATGGAGCGGCAACAGG 61.136 66.667 5.56 1.97 0.00 4.00
48 49 1.973281 AACCATGGAGCGGCAACAG 60.973 57.895 21.47 0.00 0.00 3.16
50 51 1.926511 CTCAACCATGGAGCGGCAAC 61.927 60.000 21.47 0.00 0.00 4.17
51 52 1.675310 CTCAACCATGGAGCGGCAA 60.675 57.895 21.47 0.00 0.00 4.52
52 53 2.046023 CTCAACCATGGAGCGGCA 60.046 61.111 21.47 0.00 0.00 5.69
54 55 1.153289 CTCCTCAACCATGGAGCGG 60.153 63.158 21.47 14.72 42.62 5.52
55 56 0.250234 TTCTCCTCAACCATGGAGCG 59.750 55.000 21.47 6.09 46.90 5.03
56 57 1.407989 CCTTCTCCTCAACCATGGAGC 60.408 57.143 21.47 0.00 46.90 4.70
59 60 1.211457 CCTCCTTCTCCTCAACCATGG 59.789 57.143 11.19 11.19 0.00 3.66
61 62 2.192263 GACCTCCTTCTCCTCAACCAT 58.808 52.381 0.00 0.00 0.00 3.55
62 63 1.645710 GACCTCCTTCTCCTCAACCA 58.354 55.000 0.00 0.00 0.00 3.67
63 64 0.906066 GGACCTCCTTCTCCTCAACC 59.094 60.000 0.00 0.00 0.00 3.77
64 65 1.645710 TGGACCTCCTTCTCCTCAAC 58.354 55.000 0.00 0.00 36.82 3.18
65 66 2.191400 CATGGACCTCCTTCTCCTCAA 58.809 52.381 0.00 0.00 36.82 3.02
66 67 1.623557 CCATGGACCTCCTTCTCCTCA 60.624 57.143 5.56 0.00 36.82 3.86
67 68 1.127343 CCATGGACCTCCTTCTCCTC 58.873 60.000 5.56 0.00 36.82 3.71
68 69 0.985490 GCCATGGACCTCCTTCTCCT 60.985 60.000 18.40 0.00 36.82 3.69
69 70 1.529309 GCCATGGACCTCCTTCTCC 59.471 63.158 18.40 0.00 36.82 3.71
70 71 1.144936 CGCCATGGACCTCCTTCTC 59.855 63.158 18.40 0.00 36.82 2.87
71 72 2.370445 CCGCCATGGACCTCCTTCT 61.370 63.158 18.40 0.00 42.00 2.85
73 74 4.115199 GCCGCCATGGACCTCCTT 62.115 66.667 18.40 0.00 42.00 3.36
87 88 4.367023 TTTCTCCGTGGGACGCCG 62.367 66.667 0.00 0.00 40.91 6.46
88 89 2.434359 CTTTCTCCGTGGGACGCC 60.434 66.667 0.00 0.00 40.91 5.68
89 90 3.119096 GCTTTCTCCGTGGGACGC 61.119 66.667 0.00 0.00 40.91 5.19
90 91 2.434359 GGCTTTCTCCGTGGGACG 60.434 66.667 0.00 0.00 42.11 4.79
91 92 2.046217 GGGCTTTCTCCGTGGGAC 60.046 66.667 0.00 0.00 0.00 4.46
93 94 4.426313 GGGGGCTTTCTCCGTGGG 62.426 72.222 0.00 0.00 0.00 4.61
94 95 3.646715 TGGGGGCTTTCTCCGTGG 61.647 66.667 0.00 0.00 0.00 4.94
95 96 2.359975 GTGGGGGCTTTCTCCGTG 60.360 66.667 0.00 0.00 0.00 4.94
96 97 2.852075 TGTGGGGGCTTTCTCCGT 60.852 61.111 0.00 0.00 0.00 4.69
97 98 2.045926 CTGTGGGGGCTTTCTCCG 60.046 66.667 0.00 0.00 0.00 4.63
98 99 1.002011 GACTGTGGGGGCTTTCTCC 60.002 63.158 0.00 0.00 0.00 3.71
99 100 0.402121 AAGACTGTGGGGGCTTTCTC 59.598 55.000 0.00 0.00 0.00 2.87
100 101 0.853530 AAAGACTGTGGGGGCTTTCT 59.146 50.000 0.00 0.00 0.00 2.52
102 103 0.178961 GGAAAGACTGTGGGGGCTTT 60.179 55.000 0.00 0.00 33.62 3.51
103 104 1.360393 TGGAAAGACTGTGGGGGCTT 61.360 55.000 0.00 0.00 0.00 4.35
104 105 1.774217 TGGAAAGACTGTGGGGGCT 60.774 57.895 0.00 0.00 0.00 5.19
105 106 1.603739 GTGGAAAGACTGTGGGGGC 60.604 63.158 0.00 0.00 0.00 5.80
106 107 1.074951 GGTGGAAAGACTGTGGGGG 59.925 63.158 0.00 0.00 0.00 5.40
107 108 1.302511 CGGTGGAAAGACTGTGGGG 60.303 63.158 0.00 0.00 0.00 4.96
108 109 0.179029 AACGGTGGAAAGACTGTGGG 60.179 55.000 0.00 0.00 35.54 4.61
109 110 0.944386 CAACGGTGGAAAGACTGTGG 59.056 55.000 0.00 0.00 35.54 4.17
121 122 3.206246 AACCACACGCCAACGGTG 61.206 61.111 0.00 0.00 46.04 4.94
122 123 3.206246 CAACCACACGCCAACGGT 61.206 61.111 0.00 0.00 46.04 4.83
123 124 3.206246 ACAACCACACGCCAACGG 61.206 61.111 0.00 0.00 46.04 4.44
125 126 2.058829 CTCCACAACCACACGCCAAC 62.059 60.000 0.00 0.00 0.00 3.77
127 128 2.203139 CTCCACAACCACACGCCA 60.203 61.111 0.00 0.00 0.00 5.69
128 129 2.203153 ACTCCACAACCACACGCC 60.203 61.111 0.00 0.00 0.00 5.68
129 130 2.594962 CGACTCCACAACCACACGC 61.595 63.158 0.00 0.00 0.00 5.34
130 131 1.954146 CCGACTCCACAACCACACG 60.954 63.158 0.00 0.00 0.00 4.49
131 132 0.878961 GTCCGACTCCACAACCACAC 60.879 60.000 0.00 0.00 0.00 3.82
133 134 1.301479 GGTCCGACTCCACAACCAC 60.301 63.158 0.00 0.00 0.00 4.16
134 135 1.458777 AGGTCCGACTCCACAACCA 60.459 57.895 0.00 0.00 32.25 3.67
135 136 1.292541 GAGGTCCGACTCCACAACC 59.707 63.158 0.00 0.00 0.00 3.77
156 157 3.197790 CATCGAGCTTGGCCACGG 61.198 66.667 3.88 1.94 32.11 4.94
158 159 2.456119 CGTCATCGAGCTTGGCCAC 61.456 63.158 3.88 0.00 39.71 5.01
159 160 2.125552 CGTCATCGAGCTTGGCCA 60.126 61.111 0.00 0.00 39.71 5.36
160 161 2.892425 CCGTCATCGAGCTTGGCC 60.892 66.667 0.00 0.00 39.71 5.36
163 164 2.892425 GGGCCGTCATCGAGCTTG 60.892 66.667 0.00 0.00 39.71 4.01
164 165 4.514577 CGGGCCGTCATCGAGCTT 62.515 66.667 19.97 0.00 39.71 3.74
170 171 1.664965 GATACAGCGGGCCGTCATC 60.665 63.158 28.82 19.23 0.00 2.92
171 172 2.421739 GATACAGCGGGCCGTCAT 59.578 61.111 28.82 15.01 0.00 3.06
173 174 4.944372 CGGATACAGCGGGCCGTC 62.944 72.222 28.82 19.48 38.99 4.79
191 192 2.280389 CACCATGATCTCCCCGCG 60.280 66.667 0.00 0.00 0.00 6.46
192 193 1.227674 GTCACCATGATCTCCCCGC 60.228 63.158 0.00 0.00 0.00 6.13
194 195 0.390860 CTCGTCACCATGATCTCCCC 59.609 60.000 0.00 0.00 0.00 4.81
195 196 1.403814 TCTCGTCACCATGATCTCCC 58.596 55.000 0.00 0.00 0.00 4.30
196 197 3.553922 GGAATCTCGTCACCATGATCTCC 60.554 52.174 0.00 0.00 0.00 3.71
197 198 3.320541 AGGAATCTCGTCACCATGATCTC 59.679 47.826 0.00 0.00 0.00 2.75
198 199 3.303938 AGGAATCTCGTCACCATGATCT 58.696 45.455 0.00 0.00 0.00 2.75
199 200 3.648009 GAGGAATCTCGTCACCATGATC 58.352 50.000 0.00 0.00 32.03 2.92
200 201 3.742433 GAGGAATCTCGTCACCATGAT 57.258 47.619 0.00 0.00 32.03 2.45
222 223 2.031465 GTTGCGACCTTCCCGGAA 59.969 61.111 0.73 0.00 35.11 4.30
224 225 3.835790 TTGGTTGCGACCTTCCCGG 62.836 63.158 23.87 0.00 46.66 5.73
225 226 1.852067 CTTTGGTTGCGACCTTCCCG 61.852 60.000 23.87 4.62 46.66 5.14
226 227 1.524008 CCTTTGGTTGCGACCTTCCC 61.524 60.000 23.87 0.00 46.66 3.97
227 228 1.956802 CCTTTGGTTGCGACCTTCC 59.043 57.895 23.87 0.00 46.66 3.46
228 229 1.172812 AGCCTTTGGTTGCGACCTTC 61.173 55.000 23.87 8.32 46.66 3.46
229 230 1.152756 AGCCTTTGGTTGCGACCTT 60.153 52.632 23.87 0.40 46.66 3.50
230 231 1.898574 CAGCCTTTGGTTGCGACCT 60.899 57.895 23.87 0.00 46.66 3.85
231 232 2.644992 CAGCCTTTGGTTGCGACC 59.355 61.111 17.01 17.01 46.71 4.79
232 233 2.644992 CCAGCCTTTGGTTGCGAC 59.355 61.111 0.00 0.00 42.41 5.19
240 241 0.610232 CCAACCTCCTCCAGCCTTTG 60.610 60.000 0.00 0.00 0.00 2.77
241 242 1.770324 CCAACCTCCTCCAGCCTTT 59.230 57.895 0.00 0.00 0.00 3.11
244 245 4.432741 GCCCAACCTCCTCCAGCC 62.433 72.222 0.00 0.00 0.00 4.85
245 246 3.334054 AGCCCAACCTCCTCCAGC 61.334 66.667 0.00 0.00 0.00 4.85
248 249 3.787001 CCGAGCCCAACCTCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
249 250 3.787001 CCCGAGCCCAACCTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
251 252 4.097361 GTCCCGAGCCCAACCTCC 62.097 72.222 0.00 0.00 0.00 4.30
252 253 3.316573 CTGTCCCGAGCCCAACCTC 62.317 68.421 0.00 0.00 0.00 3.85
254 255 4.410400 CCTGTCCCGAGCCCAACC 62.410 72.222 0.00 0.00 0.00 3.77
255 256 3.316573 CTCCTGTCCCGAGCCCAAC 62.317 68.421 0.00 0.00 0.00 3.77
256 257 2.822643 ATCTCCTGTCCCGAGCCCAA 62.823 60.000 0.00 0.00 0.00 4.12
257 258 3.317436 ATCTCCTGTCCCGAGCCCA 62.317 63.158 0.00 0.00 0.00 5.36
258 259 2.444895 ATCTCCTGTCCCGAGCCC 60.445 66.667 0.00 0.00 0.00 5.19
259 260 2.801631 CCATCTCCTGTCCCGAGCC 61.802 68.421 0.00 0.00 0.00 4.70
260 261 1.743321 CTCCATCTCCTGTCCCGAGC 61.743 65.000 0.00 0.00 0.00 5.03
262 263 0.106469 CTCTCCATCTCCTGTCCCGA 60.106 60.000 0.00 0.00 0.00 5.14
263 264 1.112315 CCTCTCCATCTCCTGTCCCG 61.112 65.000 0.00 0.00 0.00 5.14
264 265 0.762461 CCCTCTCCATCTCCTGTCCC 60.762 65.000 0.00 0.00 0.00 4.46
265 266 0.263172 TCCCTCTCCATCTCCTGTCC 59.737 60.000 0.00 0.00 0.00 4.02
266 267 1.760029 GTTCCCTCTCCATCTCCTGTC 59.240 57.143 0.00 0.00 0.00 3.51
267 268 1.872773 GTTCCCTCTCCATCTCCTGT 58.127 55.000 0.00 0.00 0.00 4.00
268 269 0.749649 CGTTCCCTCTCCATCTCCTG 59.250 60.000 0.00 0.00 0.00 3.86
269 270 0.631753 TCGTTCCCTCTCCATCTCCT 59.368 55.000 0.00 0.00 0.00 3.69
270 271 1.036707 CTCGTTCCCTCTCCATCTCC 58.963 60.000 0.00 0.00 0.00 3.71
271 272 1.036707 CCTCGTTCCCTCTCCATCTC 58.963 60.000 0.00 0.00 0.00 2.75
272 273 0.397816 CCCTCGTTCCCTCTCCATCT 60.398 60.000 0.00 0.00 0.00 2.90
273 274 2.034048 GCCCTCGTTCCCTCTCCATC 62.034 65.000 0.00 0.00 0.00 3.51
274 275 2.066999 GCCCTCGTTCCCTCTCCAT 61.067 63.158 0.00 0.00 0.00 3.41
275 276 2.683933 GCCCTCGTTCCCTCTCCA 60.684 66.667 0.00 0.00 0.00 3.86
276 277 3.839432 CGCCCTCGTTCCCTCTCC 61.839 72.222 0.00 0.00 0.00 3.71
277 278 3.839432 CCGCCCTCGTTCCCTCTC 61.839 72.222 0.00 0.00 0.00 3.20
298 299 1.299620 CATAGGGTTACCGTCGCCG 60.300 63.158 0.00 0.00 43.47 6.46
299 300 1.068585 CCATAGGGTTACCGTCGCC 59.931 63.158 0.00 0.00 43.47 5.54
300 301 1.068585 CCCATAGGGTTACCGTCGC 59.931 63.158 0.00 0.00 43.47 5.19
301 302 0.672342 CTCCCATAGGGTTACCGTCG 59.328 60.000 0.00 0.00 44.74 5.12
303 304 0.638292 TCCTCCCATAGGGTTACCGT 59.362 55.000 1.24 1.24 46.55 4.83
304 305 1.797320 TTCCTCCCATAGGGTTACCG 58.203 55.000 1.36 0.00 46.55 4.02
305 306 3.117625 CCTTTTCCTCCCATAGGGTTACC 60.118 52.174 1.36 0.00 46.55 2.85
306 307 3.784202 TCCTTTTCCTCCCATAGGGTTAC 59.216 47.826 1.36 0.00 46.55 2.50
307 308 4.097017 TCCTTTTCCTCCCATAGGGTTA 57.903 45.455 1.36 0.00 46.55 2.85
310 311 4.281657 CTTTTCCTTTTCCTCCCATAGGG 58.718 47.826 0.00 0.00 46.55 3.53
312 313 5.193099 TCCTTTTCCTTTTCCTCCCATAG 57.807 43.478 0.00 0.00 0.00 2.23
313 314 4.017499 CCTCCTTTTCCTTTTCCTCCCATA 60.017 45.833 0.00 0.00 0.00 2.74
315 316 2.110011 CCTCCTTTTCCTTTTCCTCCCA 59.890 50.000 0.00 0.00 0.00 4.37
317 318 2.378886 TCCCTCCTTTTCCTTTTCCTCC 59.621 50.000 0.00 0.00 0.00 4.30
320 321 2.160205 CGTCCCTCCTTTTCCTTTTCC 58.840 52.381 0.00 0.00 0.00 3.13
321 322 1.540267 GCGTCCCTCCTTTTCCTTTTC 59.460 52.381 0.00 0.00 0.00 2.29
322 323 1.145119 AGCGTCCCTCCTTTTCCTTTT 59.855 47.619 0.00 0.00 0.00 2.27
324 325 0.771755 AAGCGTCCCTCCTTTTCCTT 59.228 50.000 0.00 0.00 0.00 3.36
325 326 0.325272 GAAGCGTCCCTCCTTTTCCT 59.675 55.000 0.00 0.00 0.00 3.36
326 327 1.019805 CGAAGCGTCCCTCCTTTTCC 61.020 60.000 0.00 0.00 0.00 3.13
327 328 1.019805 CCGAAGCGTCCCTCCTTTTC 61.020 60.000 0.00 0.00 0.00 2.29
330 331 2.603776 ACCGAAGCGTCCCTCCTT 60.604 61.111 0.00 0.00 0.00 3.36
342 343 4.388499 GCCTCCCTTCGCACCGAA 62.388 66.667 0.00 0.00 43.75 4.30
345 346 3.672295 CTCAGCCTCCCTTCGCACC 62.672 68.421 0.00 0.00 0.00 5.01
346 347 2.125350 CTCAGCCTCCCTTCGCAC 60.125 66.667 0.00 0.00 0.00 5.34
347 348 4.087892 GCTCAGCCTCCCTTCGCA 62.088 66.667 0.00 0.00 0.00 5.10
348 349 4.087892 TGCTCAGCCTCCCTTCGC 62.088 66.667 0.00 0.00 0.00 4.70
349 350 2.125350 GTGCTCAGCCTCCCTTCG 60.125 66.667 0.00 0.00 0.00 3.79
350 351 0.676151 CAAGTGCTCAGCCTCCCTTC 60.676 60.000 0.00 0.00 0.00 3.46
352 353 1.422161 AACAAGTGCTCAGCCTCCCT 61.422 55.000 0.00 0.00 0.00 4.20
353 354 0.538287 AAACAAGTGCTCAGCCTCCC 60.538 55.000 0.00 0.00 0.00 4.30
354 355 1.322442 AAAACAAGTGCTCAGCCTCC 58.678 50.000 0.00 0.00 0.00 4.30
355 356 2.099756 ACAAAAACAAGTGCTCAGCCTC 59.900 45.455 0.00 0.00 0.00 4.70
356 357 2.102578 ACAAAAACAAGTGCTCAGCCT 58.897 42.857 0.00 0.00 0.00 4.58
357 358 2.584492 ACAAAAACAAGTGCTCAGCC 57.416 45.000 0.00 0.00 0.00 4.85
358 359 4.176271 AGAAACAAAAACAAGTGCTCAGC 58.824 39.130 0.00 0.00 0.00 4.26
361 362 5.640732 TGAGAGAAACAAAAACAAGTGCTC 58.359 37.500 0.00 0.00 0.00 4.26
362 363 5.643379 TGAGAGAAACAAAAACAAGTGCT 57.357 34.783 0.00 0.00 0.00 4.40
363 364 6.291269 CGATTGAGAGAAACAAAAACAAGTGC 60.291 38.462 0.00 0.00 0.00 4.40
364 365 6.197096 CCGATTGAGAGAAACAAAAACAAGTG 59.803 38.462 0.00 0.00 0.00 3.16
365 366 6.127730 ACCGATTGAGAGAAACAAAAACAAGT 60.128 34.615 0.00 0.00 0.00 3.16
366 367 6.265577 ACCGATTGAGAGAAACAAAAACAAG 58.734 36.000 0.00 0.00 0.00 3.16
367 368 6.202516 ACCGATTGAGAGAAACAAAAACAA 57.797 33.333 0.00 0.00 0.00 2.83
368 369 5.828299 ACCGATTGAGAGAAACAAAAACA 57.172 34.783 0.00 0.00 0.00 2.83
369 370 6.721321 TGTACCGATTGAGAGAAACAAAAAC 58.279 36.000 0.00 0.00 0.00 2.43
370 371 6.540914 ACTGTACCGATTGAGAGAAACAAAAA 59.459 34.615 0.00 0.00 0.00 1.94
372 373 5.607477 ACTGTACCGATTGAGAGAAACAAA 58.393 37.500 0.00 0.00 0.00 2.83
374 375 4.866508 ACTGTACCGATTGAGAGAAACA 57.133 40.909 0.00 0.00 0.00 2.83
375 376 7.253684 CGATTTACTGTACCGATTGAGAGAAAC 60.254 40.741 0.00 0.00 0.00 2.78
377 378 6.263344 CGATTTACTGTACCGATTGAGAGAA 58.737 40.000 0.00 0.00 0.00 2.87
379 380 4.441415 GCGATTTACTGTACCGATTGAGAG 59.559 45.833 7.38 0.00 0.00 3.20
380 381 4.357142 GCGATTTACTGTACCGATTGAGA 58.643 43.478 7.38 0.00 0.00 3.27
382 383 3.119065 TGGCGATTTACTGTACCGATTGA 60.119 43.478 7.38 0.00 0.00 2.57
383 384 3.000925 GTGGCGATTTACTGTACCGATTG 59.999 47.826 7.38 0.04 0.00 2.67
384 385 3.192466 GTGGCGATTTACTGTACCGATT 58.808 45.455 7.38 0.00 0.00 3.34
385 386 2.166870 TGTGGCGATTTACTGTACCGAT 59.833 45.455 7.38 0.00 0.00 4.18
387 388 1.924524 CTGTGGCGATTTACTGTACCG 59.075 52.381 0.00 0.00 0.00 4.02
388 389 2.671396 CACTGTGGCGATTTACTGTACC 59.329 50.000 0.00 0.00 0.00 3.34
389 390 3.581755 TCACTGTGGCGATTTACTGTAC 58.418 45.455 8.11 0.00 0.00 2.90
392 393 4.481930 TTTTCACTGTGGCGATTTACTG 57.518 40.909 8.11 0.00 0.00 2.74
393 394 4.142902 CGATTTTCACTGTGGCGATTTACT 60.143 41.667 8.11 0.00 0.00 2.24
394 395 4.088648 CGATTTTCACTGTGGCGATTTAC 58.911 43.478 8.11 0.00 0.00 2.01
396 397 2.668279 GCGATTTTCACTGTGGCGATTT 60.668 45.455 8.11 0.00 0.00 2.17
399 400 1.866237 GCGATTTTCACTGTGGCGA 59.134 52.632 8.11 0.00 0.00 5.54
400 401 1.509787 CGCGATTTTCACTGTGGCG 60.510 57.895 0.00 9.96 34.09 5.69
402 403 0.165944 GTCCGCGATTTTCACTGTGG 59.834 55.000 8.23 0.00 0.00 4.17
403 404 0.179250 CGTCCGCGATTTTCACTGTG 60.179 55.000 8.23 0.17 41.33 3.66
406 407 1.289109 CCACGTCCGCGATTTTCACT 61.289 55.000 8.23 0.00 42.00 3.41
407 408 1.131826 CCACGTCCGCGATTTTCAC 59.868 57.895 8.23 0.00 42.00 3.18
409 410 1.079875 TAGCCACGTCCGCGATTTTC 61.080 55.000 8.23 0.00 42.00 2.29
410 411 0.461339 ATAGCCACGTCCGCGATTTT 60.461 50.000 8.23 0.00 42.00 1.82
412 413 1.299926 GATAGCCACGTCCGCGATT 60.300 57.895 8.23 0.00 42.00 3.34
413 414 2.335369 GATAGCCACGTCCGCGAT 59.665 61.111 8.23 0.13 42.00 4.58
414 415 4.246206 CGATAGCCACGTCCGCGA 62.246 66.667 8.23 0.00 42.00 5.87
427 428 0.823769 ATGTGCTCCCTCTCGCGATA 60.824 55.000 10.36 0.10 0.00 2.92
428 429 1.680522 AATGTGCTCCCTCTCGCGAT 61.681 55.000 10.36 0.00 0.00 4.58
429 430 2.351244 AATGTGCTCCCTCTCGCGA 61.351 57.895 9.26 9.26 0.00 5.87
431 432 1.078848 ACAATGTGCTCCCTCTCGC 60.079 57.895 0.00 0.00 0.00 5.03
432 433 2.759783 CACAATGTGCTCCCTCTCG 58.240 57.895 0.00 0.00 0.00 4.04
443 444 2.739913 AGCATTAACGTACGCACAATGT 59.260 40.909 25.24 15.80 0.00 2.71
444 445 3.383546 AGCATTAACGTACGCACAATG 57.616 42.857 22.68 22.68 0.00 2.82
446 447 6.644191 TTAATAGCATTAACGTACGCACAA 57.356 33.333 16.72 7.22 0.00 3.33
447 448 6.831727 ATTAATAGCATTAACGTACGCACA 57.168 33.333 16.72 0.00 0.00 4.57
448 449 9.801714 ATTAATTAATAGCATTAACGTACGCAC 57.198 29.630 16.72 0.00 30.63 5.34
450 451 9.257865 CCATTAATTAATAGCATTAACGTACGC 57.742 33.333 16.72 0.00 30.63 4.42
451 452 9.257865 GCCATTAATTAATAGCATTAACGTACG 57.742 33.333 19.64 15.01 31.91 3.67
454 455 8.296713 CCAGCCATTAATTAATAGCATTAACGT 58.703 33.333 24.32 5.29 33.63 3.99
455 456 7.754924 CCCAGCCATTAATTAATAGCATTAACG 59.245 37.037 24.32 9.73 33.63 3.18
456 457 8.585018 ACCCAGCCATTAATTAATAGCATTAAC 58.415 33.333 24.32 1.40 33.63 2.01
457 458 8.584157 CACCCAGCCATTAATTAATAGCATTAA 58.416 33.333 24.32 4.52 33.63 1.40
458 459 7.947332 TCACCCAGCCATTAATTAATAGCATTA 59.053 33.333 24.32 6.67 33.63 1.90
461 462 5.534654 GTCACCCAGCCATTAATTAATAGCA 59.465 40.000 24.32 5.88 33.63 3.49
462 463 5.770162 AGTCACCCAGCCATTAATTAATAGC 59.230 40.000 17.65 17.65 31.76 2.97
465 466 6.668645 TGTAGTCACCCAGCCATTAATTAAT 58.331 36.000 4.81 4.81 0.00 1.40
466 467 6.068461 TGTAGTCACCCAGCCATTAATTAA 57.932 37.500 0.00 0.00 0.00 1.40
468 469 4.584638 TGTAGTCACCCAGCCATTAATT 57.415 40.909 0.00 0.00 0.00 1.40
470 471 3.329520 ACTTGTAGTCACCCAGCCATTAA 59.670 43.478 0.00 0.00 0.00 1.40
471 472 2.910319 ACTTGTAGTCACCCAGCCATTA 59.090 45.455 0.00 0.00 0.00 1.90
472 473 1.705186 ACTTGTAGTCACCCAGCCATT 59.295 47.619 0.00 0.00 0.00 3.16
473 474 1.362224 ACTTGTAGTCACCCAGCCAT 58.638 50.000 0.00 0.00 0.00 4.40
474 475 1.136828 AACTTGTAGTCACCCAGCCA 58.863 50.000 0.00 0.00 0.00 4.75
475 476 2.152016 GAAACTTGTAGTCACCCAGCC 58.848 52.381 0.00 0.00 0.00 4.85
477 478 3.403038 CCTGAAACTTGTAGTCACCCAG 58.597 50.000 0.00 0.00 0.00 4.45
478 479 2.486548 GCCTGAAACTTGTAGTCACCCA 60.487 50.000 0.00 0.00 0.00 4.51
479 480 2.152016 GCCTGAAACTTGTAGTCACCC 58.848 52.381 0.00 0.00 0.00 4.61
481 482 2.548480 GTGGCCTGAAACTTGTAGTCAC 59.452 50.000 3.32 0.00 0.00 3.67
482 483 2.438021 AGTGGCCTGAAACTTGTAGTCA 59.562 45.455 3.32 0.00 0.00 3.41
483 484 3.127425 AGTGGCCTGAAACTTGTAGTC 57.873 47.619 3.32 0.00 0.00 2.59
484 485 3.214328 CAAGTGGCCTGAAACTTGTAGT 58.786 45.455 20.37 0.00 45.30 2.73
485 486 3.904136 CAAGTGGCCTGAAACTTGTAG 57.096 47.619 20.37 1.52 45.30 2.74
490 491 1.202818 GGAGTCAAGTGGCCTGAAACT 60.203 52.381 3.32 0.73 0.00 2.66
491 492 1.239347 GGAGTCAAGTGGCCTGAAAC 58.761 55.000 3.32 0.00 0.00 2.78
492 493 0.843309 TGGAGTCAAGTGGCCTGAAA 59.157 50.000 3.32 0.00 0.00 2.69
493 494 0.108585 GTGGAGTCAAGTGGCCTGAA 59.891 55.000 3.32 0.00 0.00 3.02
494 495 0.764369 AGTGGAGTCAAGTGGCCTGA 60.764 55.000 3.32 0.00 0.00 3.86
495 496 0.321122 GAGTGGAGTCAAGTGGCCTG 60.321 60.000 3.32 0.00 0.00 4.85
497 498 0.321122 CAGAGTGGAGTCAAGTGGCC 60.321 60.000 0.00 0.00 0.00 5.36
499 500 1.967066 AGTCAGAGTGGAGTCAAGTGG 59.033 52.381 0.00 0.00 0.00 4.00
500 501 4.075682 TCTAGTCAGAGTGGAGTCAAGTG 58.924 47.826 0.00 0.00 0.00 3.16
501 502 4.374689 TCTAGTCAGAGTGGAGTCAAGT 57.625 45.455 0.00 0.00 0.00 3.16
502 503 5.007034 TCTTCTAGTCAGAGTGGAGTCAAG 58.993 45.833 0.00 0.00 30.73 3.02
503 504 4.986783 TCTTCTAGTCAGAGTGGAGTCAA 58.013 43.478 0.00 0.00 30.73 3.18
505 506 6.995686 TCATATCTTCTAGTCAGAGTGGAGTC 59.004 42.308 0.00 0.00 30.73 3.36
506 507 6.770785 GTCATATCTTCTAGTCAGAGTGGAGT 59.229 42.308 0.00 0.00 30.73 3.85
507 508 6.073276 CGTCATATCTTCTAGTCAGAGTGGAG 60.073 46.154 0.00 0.00 30.73 3.86
508 509 5.760743 CGTCATATCTTCTAGTCAGAGTGGA 59.239 44.000 0.00 0.00 30.73 4.02
509 510 5.529430 ACGTCATATCTTCTAGTCAGAGTGG 59.471 44.000 0.00 0.00 30.73 4.00
510 511 6.258947 TCACGTCATATCTTCTAGTCAGAGTG 59.741 42.308 0.00 0.00 30.73 3.51
511 512 6.350103 TCACGTCATATCTTCTAGTCAGAGT 58.650 40.000 0.00 0.00 30.73 3.24
512 513 6.852858 TCACGTCATATCTTCTAGTCAGAG 57.147 41.667 0.00 0.00 30.73 3.35
513 514 7.307455 CGATTCACGTCATATCTTCTAGTCAGA 60.307 40.741 0.00 0.00 37.22 3.27
514 515 6.794636 CGATTCACGTCATATCTTCTAGTCAG 59.205 42.308 0.00 0.00 37.22 3.51
545 546 4.590553 TGGCCCCTGTCCTCACCA 62.591 66.667 0.00 0.00 0.00 4.17
577 578 2.796651 CCGCAAGCAGATTCAGCC 59.203 61.111 0.00 0.00 0.00 4.85
608 609 4.275689 TCTTTTCATCCATTGCGCGATAAT 59.724 37.500 12.10 6.77 0.00 1.28
609 610 3.625313 TCTTTTCATCCATTGCGCGATAA 59.375 39.130 12.10 4.08 0.00 1.75
610 611 3.202097 TCTTTTCATCCATTGCGCGATA 58.798 40.909 12.10 0.00 0.00 2.92
612 613 1.447945 TCTTTTCATCCATTGCGCGA 58.552 45.000 12.10 0.00 0.00 5.87
614 615 3.307782 CCATTTCTTTTCATCCATTGCGC 59.692 43.478 0.00 0.00 0.00 6.09
615 616 4.746729 TCCATTTCTTTTCATCCATTGCG 58.253 39.130 0.00 0.00 0.00 4.85
617 618 6.880484 TGGATCCATTTCTTTTCATCCATTG 58.120 36.000 11.44 0.00 35.85 2.82
641 642 1.778484 CCATACCCCCGGACCTTATTT 59.222 52.381 0.73 0.00 0.00 1.40
664 665 7.778185 TTTCTTTTCCGGGTCCATTTATTTA 57.222 32.000 0.00 0.00 0.00 1.40
710 711 4.682860 GTGCTGATTGTGATTCTTGGTTTG 59.317 41.667 0.00 0.00 0.00 2.93
714 715 2.159476 CCGTGCTGATTGTGATTCTTGG 60.159 50.000 0.00 0.00 0.00 3.61
827 829 3.493699 CCAGTTCAGTTTCCCGTCAGTTA 60.494 47.826 0.00 0.00 0.00 2.24
996 1045 2.590114 AAGCTACGAAAGGGCGGGT 61.590 57.895 0.00 0.00 38.58 5.28
1295 1384 4.087892 TCTGGAGCTTGCTCCCGC 62.088 66.667 31.37 13.20 42.69 6.13
1651 1743 1.043673 ATCCTCTTCTTAGGGCGCGT 61.044 55.000 8.43 0.00 37.24 6.01
2064 4774 1.687612 CTGTTGGCCCATCTCCACT 59.312 57.895 0.00 0.00 32.45 4.00
2110 4820 0.689745 ATACCCTCCAGCACGCCTTA 60.690 55.000 0.00 0.00 0.00 2.69
2120 4830 1.626356 GGACTGCAGCATACCCTCCA 61.626 60.000 15.27 0.00 0.00 3.86
2121 4831 1.147153 GGACTGCAGCATACCCTCC 59.853 63.158 15.27 7.63 0.00 4.30
2122 4832 1.227380 CGGACTGCAGCATACCCTC 60.227 63.158 15.27 1.14 0.00 4.30
2123 4833 1.050988 ATCGGACTGCAGCATACCCT 61.051 55.000 15.27 0.00 0.00 4.34
2124 4834 0.179045 AATCGGACTGCAGCATACCC 60.179 55.000 15.27 6.62 0.00 3.69
2125 4835 2.135933 GTAATCGGACTGCAGCATACC 58.864 52.381 15.27 11.36 0.00 2.73
2126 4836 2.135933 GGTAATCGGACTGCAGCATAC 58.864 52.381 15.27 7.95 0.00 2.39
2127 4837 1.070134 GGGTAATCGGACTGCAGCATA 59.930 52.381 15.27 0.00 0.00 3.14
2128 4838 0.179045 GGGTAATCGGACTGCAGCAT 60.179 55.000 15.27 0.00 0.00 3.79
2129 4839 1.220749 GGGTAATCGGACTGCAGCA 59.779 57.895 15.27 0.00 0.00 4.41
2130 4840 0.811616 CAGGGTAATCGGACTGCAGC 60.812 60.000 15.27 6.61 0.00 5.25
2131 4841 3.369381 CAGGGTAATCGGACTGCAG 57.631 57.895 13.48 13.48 0.00 4.41
2172 4936 1.067516 GGCGCGGTATTGTACCTCTTA 59.932 52.381 8.83 0.00 46.81 2.10
2536 5310 6.712241 ACACAAACTTCAGAACATCGATAG 57.288 37.500 0.00 0.00 0.00 2.08
2552 5326 4.729564 GCATGCAAAATTGTCAACACAAAC 59.270 37.500 14.21 0.00 45.78 2.93
2585 5676 8.818057 GCTGAGAGAAACTAAGCGAAATAAATA 58.182 33.333 0.00 0.00 42.46 1.40
2586 5677 7.689299 GCTGAGAGAAACTAAGCGAAATAAAT 58.311 34.615 0.00 0.00 42.46 1.40
2587 5678 7.061752 GCTGAGAGAAACTAAGCGAAATAAA 57.938 36.000 0.00 0.00 42.46 1.40
2588 5679 6.648725 GCTGAGAGAAACTAAGCGAAATAA 57.351 37.500 0.00 0.00 42.46 1.40
2596 5687 4.754114 AGTTTGCAGCTGAGAGAAACTAAG 59.246 41.667 20.43 0.00 35.59 2.18
2597 5688 4.708177 AGTTTGCAGCTGAGAGAAACTAA 58.292 39.130 20.43 0.00 35.59 2.24
2613 5704 4.331992 GGAGGGAGTAATTACGAAGTTTGC 59.668 45.833 9.91 0.00 37.78 3.68
2633 5724 7.734538 AATGTTTTTATATTTTGCGACGGAG 57.265 32.000 0.00 0.00 0.00 4.63
2645 5736 9.218440 CCCACAGCTTGAAAAATGTTTTTATAT 57.782 29.630 3.64 0.00 40.21 0.86
2646 5737 8.424918 TCCCACAGCTTGAAAAATGTTTTTATA 58.575 29.630 3.64 0.00 40.21 0.98
2647 5738 7.226523 GTCCCACAGCTTGAAAAATGTTTTTAT 59.773 33.333 3.64 0.00 40.21 1.40
2648 5739 6.536941 GTCCCACAGCTTGAAAAATGTTTTTA 59.463 34.615 3.64 0.00 40.21 1.52
2649 5740 5.353956 GTCCCACAGCTTGAAAAATGTTTTT 59.646 36.000 3.30 3.30 42.60 1.94
2650 5741 4.875536 GTCCCACAGCTTGAAAAATGTTTT 59.124 37.500 0.00 0.00 0.00 2.43
2651 5742 4.441792 GTCCCACAGCTTGAAAAATGTTT 58.558 39.130 0.00 0.00 0.00 2.83
2652 5743 3.490761 CGTCCCACAGCTTGAAAAATGTT 60.491 43.478 0.00 0.00 0.00 2.71
2653 5744 2.034558 CGTCCCACAGCTTGAAAAATGT 59.965 45.455 0.00 0.00 0.00 2.71
2654 5745 2.293122 TCGTCCCACAGCTTGAAAAATG 59.707 45.455 0.00 0.00 0.00 2.32
2655 5746 2.554032 CTCGTCCCACAGCTTGAAAAAT 59.446 45.455 0.00 0.00 0.00 1.82
2656 5747 1.946768 CTCGTCCCACAGCTTGAAAAA 59.053 47.619 0.00 0.00 0.00 1.94
2657 5748 1.593196 CTCGTCCCACAGCTTGAAAA 58.407 50.000 0.00 0.00 0.00 2.29
2658 5749 0.250295 CCTCGTCCCACAGCTTGAAA 60.250 55.000 0.00 0.00 0.00 2.69
2659 5750 1.371183 CCTCGTCCCACAGCTTGAA 59.629 57.895 0.00 0.00 0.00 2.69
2660 5751 2.583441 CCCTCGTCCCACAGCTTGA 61.583 63.158 0.00 0.00 0.00 3.02
2661 5752 2.046892 CCCTCGTCCCACAGCTTG 60.047 66.667 0.00 0.00 0.00 4.01
2662 5753 2.203788 TCCCTCGTCCCACAGCTT 60.204 61.111 0.00 0.00 0.00 3.74
2663 5754 2.151307 TACTCCCTCGTCCCACAGCT 62.151 60.000 0.00 0.00 0.00 4.24
2664 5755 1.668101 CTACTCCCTCGTCCCACAGC 61.668 65.000 0.00 0.00 0.00 4.40
2665 5756 0.323542 ACTACTCCCTCGTCCCACAG 60.324 60.000 0.00 0.00 0.00 3.66
2666 5757 0.994247 TACTACTCCCTCGTCCCACA 59.006 55.000 0.00 0.00 0.00 4.17
2667 5758 1.211457 TCTACTACTCCCTCGTCCCAC 59.789 57.143 0.00 0.00 0.00 4.61
2668 5759 1.588239 TCTACTACTCCCTCGTCCCA 58.412 55.000 0.00 0.00 0.00 4.37
2669 5760 2.092484 AGTTCTACTACTCCCTCGTCCC 60.092 54.545 0.00 0.00 0.00 4.46
2670 5761 3.280197 AGTTCTACTACTCCCTCGTCC 57.720 52.381 0.00 0.00 0.00 4.79
2671 5762 4.516323 AGAAGTTCTACTACTCCCTCGTC 58.484 47.826 2.75 0.00 0.00 4.20
2672 5763 4.019501 TGAGAAGTTCTACTACTCCCTCGT 60.020 45.833 5.09 0.00 33.80 4.18
2673 5764 4.515361 TGAGAAGTTCTACTACTCCCTCG 58.485 47.826 5.09 0.00 33.80 4.63
2674 5765 6.123651 TCATGAGAAGTTCTACTACTCCCTC 58.876 44.000 5.09 0.00 32.72 4.30
2675 5766 6.080969 TCATGAGAAGTTCTACTACTCCCT 57.919 41.667 5.09 0.00 0.00 4.20
2676 5767 6.969993 ATCATGAGAAGTTCTACTACTCCC 57.030 41.667 5.09 0.00 0.00 4.30
2677 5768 8.134895 CAGAATCATGAGAAGTTCTACTACTCC 58.865 40.741 5.09 0.00 30.29 3.85
2678 5769 8.134895 CCAGAATCATGAGAAGTTCTACTACTC 58.865 40.741 5.09 0.00 30.29 2.59
2679 5770 7.617723 ACCAGAATCATGAGAAGTTCTACTACT 59.382 37.037 5.09 0.00 30.29 2.57
2680 5771 7.777095 ACCAGAATCATGAGAAGTTCTACTAC 58.223 38.462 5.09 0.00 30.29 2.73
2718 6687 6.534634 ACTGAACCAAAGCTTAGTAGTTGAT 58.465 36.000 0.00 0.00 0.00 2.57
2749 6718 9.685276 TTGATTCATATAGAACCAAATGTGAGT 57.315 29.630 0.00 0.00 36.80 3.41
2821 6791 4.748102 CGAAGTACTTGCCTAAGTTTGTCA 59.252 41.667 14.14 0.00 44.57 3.58
2823 6793 4.748600 GTCGAAGTACTTGCCTAAGTTTGT 59.251 41.667 14.14 0.00 44.57 2.83
2842 6812 1.018910 TCAGAGTTGACACACGTCGA 58.981 50.000 0.00 0.00 45.80 4.20
2871 6841 9.047947 AGGTCTTCTGTTCTTAACTACCATTAT 57.952 33.333 0.00 0.00 0.00 1.28
2872 6842 8.431910 AGGTCTTCTGTTCTTAACTACCATTA 57.568 34.615 0.00 0.00 0.00 1.90
2873 6843 7.317722 AGGTCTTCTGTTCTTAACTACCATT 57.682 36.000 0.00 0.00 0.00 3.16
2874 6844 6.936968 AGGTCTTCTGTTCTTAACTACCAT 57.063 37.500 0.00 0.00 0.00 3.55
2876 6846 7.713942 TGAAAAGGTCTTCTGTTCTTAACTACC 59.286 37.037 0.00 0.00 39.81 3.18
2878 6848 8.483758 ACTGAAAAGGTCTTCTGTTCTTAACTA 58.516 33.333 0.00 0.00 39.81 2.24
2883 6853 8.047310 TCTTAACTGAAAAGGTCTTCTGTTCTT 58.953 33.333 10.60 0.00 42.79 2.52
2890 6860 7.787725 TCAAGTCTTAACTGAAAAGGTCTTC 57.212 36.000 0.00 0.00 35.36 2.87
2928 6898 3.763897 AGGTTAAAGGTTGCATGGCTAAG 59.236 43.478 0.00 0.00 0.00 2.18
2939 6909 5.944135 TGCTGGTAGTAAAGGTTAAAGGTT 58.056 37.500 0.00 0.00 0.00 3.50
3032 7002 4.267349 TCAGAACCTTTACTGCCTGTAC 57.733 45.455 0.00 0.00 34.57 2.90
3212 7184 4.025040 TCAGGCTTGACAACTCATGAAT 57.975 40.909 0.00 0.00 0.00 2.57
3287 7259 7.595819 TCTCCAACCAAATAAGTGTGAAATT 57.404 32.000 0.00 0.00 0.00 1.82
3369 7341 4.408921 TCCTCAACGACATCCCATTTCTAT 59.591 41.667 0.00 0.00 0.00 1.98
3385 7357 4.274459 AGCGATGATAAGCAATTCCTCAAC 59.726 41.667 0.00 0.00 35.48 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.