Multiple sequence alignment - TraesCS7D01G210500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G210500 chr7D 100.000 2918 0 0 1 2918 168496028 168493111 0.000000e+00 5389.0
1 TraesCS7D01G210500 chr7D 80.318 691 89 27 2266 2918 379776433 379775752 2.030000e-131 479.0
2 TraesCS7D01G210500 chr7D 100.000 155 0 0 1 155 42796817 42796663 1.320000e-73 287.0
3 TraesCS7D01G210500 chr7D 96.203 158 6 0 1 158 556182701 556182858 2.880000e-65 259.0
4 TraesCS7D01G210500 chr7B 88.564 1163 59 28 887 1991 133792991 133791845 0.000000e+00 1343.0
5 TraesCS7D01G210500 chr7B 88.032 493 24 14 368 851 133793461 133792995 4.250000e-153 551.0
6 TraesCS7D01G210500 chr7B 86.111 108 12 2 156 263 133795032 133794928 2.380000e-21 113.0
7 TraesCS7D01G210500 chr7A 84.593 1019 61 40 628 1608 170685407 170684447 0.000000e+00 924.0
8 TraesCS7D01G210500 chr7A 84.401 609 75 17 2319 2918 126859730 126859133 5.420000e-162 580.0
9 TraesCS7D01G210500 chr7A 89.499 419 20 11 1592 1995 170684432 170684023 2.590000e-140 508.0
10 TraesCS7D01G210500 chr7A 79.681 502 78 19 2424 2918 19904707 19904223 1.000000e-89 340.0
11 TraesCS7D01G210500 chr2A 84.423 841 97 23 2090 2918 771797580 771796762 0.000000e+00 797.0
12 TraesCS7D01G210500 chr3A 83.929 840 99 26 2095 2918 129488212 129489031 0.000000e+00 771.0
13 TraesCS7D01G210500 chr2D 79.977 869 91 29 2104 2918 395109444 395110283 5.460000e-157 564.0
14 TraesCS7D01G210500 chr2B 78.302 848 116 38 2098 2908 541891826 541892642 4.370000e-133 484.0
15 TraesCS7D01G210500 chr3B 78.143 851 109 31 2098 2912 240531184 240530375 1.220000e-128 470.0
16 TraesCS7D01G210500 chr3B 96.835 158 4 1 2 159 803762841 803762685 2.230000e-66 263.0
17 TraesCS7D01G210500 chr5B 87.603 363 38 7 2557 2918 295650110 295649754 5.820000e-112 414.0
18 TraesCS7D01G210500 chr5B 83.871 403 39 17 2173 2560 295652924 295652533 7.690000e-96 361.0
19 TraesCS7D01G210500 chr5B 96.250 160 6 0 1 160 65492425 65492584 2.230000e-66 263.0
20 TraesCS7D01G210500 chr3D 98.765 162 1 1 1 161 546670759 546670920 1.320000e-73 287.0
21 TraesCS7D01G210500 chr3D 99.355 155 1 0 1 155 566067772 566067926 6.160000e-72 281.0
22 TraesCS7D01G210500 chr4D 98.077 156 3 0 1 156 506850746 506850591 3.710000e-69 272.0
23 TraesCS7D01G210500 chr5D 96.273 161 6 0 1 161 557802782 557802942 6.200000e-67 265.0
24 TraesCS7D01G210500 chr1B 96.250 160 6 0 2 161 513311575 513311734 2.230000e-66 263.0
25 TraesCS7D01G210500 chr1D 91.837 49 4 0 324 372 29476811 29476763 5.220000e-08 69.4
26 TraesCS7D01G210500 chr6D 97.436 39 1 0 325 363 295068204 295068242 1.880000e-07 67.6
27 TraesCS7D01G210500 chr6A 94.286 35 2 0 2105 2139 166499605 166499571 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G210500 chr7D 168493111 168496028 2917 True 5389.0 5389 100.000 1 2918 1 chr7D.!!$R2 2917
1 TraesCS7D01G210500 chr7D 379775752 379776433 681 True 479.0 479 80.318 2266 2918 1 chr7D.!!$R3 652
2 TraesCS7D01G210500 chr7B 133791845 133795032 3187 True 669.0 1343 87.569 156 1991 3 chr7B.!!$R1 1835
3 TraesCS7D01G210500 chr7A 170684023 170685407 1384 True 716.0 924 87.046 628 1995 2 chr7A.!!$R3 1367
4 TraesCS7D01G210500 chr7A 126859133 126859730 597 True 580.0 580 84.401 2319 2918 1 chr7A.!!$R2 599
5 TraesCS7D01G210500 chr2A 771796762 771797580 818 True 797.0 797 84.423 2090 2918 1 chr2A.!!$R1 828
6 TraesCS7D01G210500 chr3A 129488212 129489031 819 False 771.0 771 83.929 2095 2918 1 chr3A.!!$F1 823
7 TraesCS7D01G210500 chr2D 395109444 395110283 839 False 564.0 564 79.977 2104 2918 1 chr2D.!!$F1 814
8 TraesCS7D01G210500 chr2B 541891826 541892642 816 False 484.0 484 78.302 2098 2908 1 chr2B.!!$F1 810
9 TraesCS7D01G210500 chr3B 240530375 240531184 809 True 470.0 470 78.143 2098 2912 1 chr3B.!!$R1 814
10 TraesCS7D01G210500 chr5B 295649754 295652924 3170 True 387.5 414 85.737 2173 2918 2 chr5B.!!$R1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.031585 GTATATGCACGGTCTCGCCA 59.968 55.0 0.0 0.0 40.63 5.69 F
882 2318 0.034896 CGTAACCCTTCACAGCCTGT 59.965 55.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1228 2678 0.034896 GCACGACCCAAAGGAGAAGA 59.965 55.0 0.00 0.0 36.73 2.87 R
1977 3523 0.322546 GGTCGTTTTGGATGGCCTCT 60.323 55.0 3.32 0.0 36.05 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.920312 GATGCCATGTCGATGTACTTTATG 58.080 41.667 0.00 0.00 0.00 1.90
24 25 4.765273 TGCCATGTCGATGTACTTTATGT 58.235 39.130 0.00 0.00 0.00 2.29
25 26 4.808895 TGCCATGTCGATGTACTTTATGTC 59.191 41.667 0.00 0.00 0.00 3.06
26 27 5.050490 GCCATGTCGATGTACTTTATGTCT 58.950 41.667 0.00 0.00 0.00 3.41
27 28 6.183360 TGCCATGTCGATGTACTTTATGTCTA 60.183 38.462 0.00 0.00 0.00 2.59
28 29 6.144080 GCCATGTCGATGTACTTTATGTCTAC 59.856 42.308 0.00 0.00 0.00 2.59
29 30 6.359883 CCATGTCGATGTACTTTATGTCTACG 59.640 42.308 0.00 0.00 0.00 3.51
30 31 5.813717 TGTCGATGTACTTTATGTCTACGG 58.186 41.667 0.00 0.00 0.00 4.02
31 32 5.585844 TGTCGATGTACTTTATGTCTACGGA 59.414 40.000 0.00 0.00 0.00 4.69
32 33 5.906285 GTCGATGTACTTTATGTCTACGGAC 59.094 44.000 0.00 0.00 42.42 4.79
43 44 4.041740 TGTCTACGGACATGATTAGCAC 57.958 45.455 0.00 0.00 46.19 4.40
44 45 3.181479 TGTCTACGGACATGATTAGCACC 60.181 47.826 0.00 0.00 46.19 5.01
45 46 2.034179 TCTACGGACATGATTAGCACCG 59.966 50.000 0.00 0.00 44.77 4.94
46 47 0.535335 ACGGACATGATTAGCACCGT 59.465 50.000 0.00 0.00 46.69 4.83
47 48 2.502213 CGGACATGATTAGCACCGTA 57.498 50.000 0.00 0.00 36.38 4.02
48 49 3.026630 CGGACATGATTAGCACCGTAT 57.973 47.619 0.00 0.00 36.38 3.06
49 50 4.168922 CGGACATGATTAGCACCGTATA 57.831 45.455 0.00 0.00 36.38 1.47
50 51 4.744570 CGGACATGATTAGCACCGTATAT 58.255 43.478 0.00 0.00 36.38 0.86
51 52 4.562789 CGGACATGATTAGCACCGTATATG 59.437 45.833 0.00 0.00 36.38 1.78
52 53 4.330074 GGACATGATTAGCACCGTATATGC 59.670 45.833 0.00 0.00 43.74 3.14
53 54 4.893608 ACATGATTAGCACCGTATATGCA 58.106 39.130 0.00 0.00 45.92 3.96
54 55 4.690748 ACATGATTAGCACCGTATATGCAC 59.309 41.667 0.00 0.00 45.92 4.57
55 56 3.313690 TGATTAGCACCGTATATGCACG 58.686 45.455 0.00 0.00 45.92 5.34
62 63 2.421131 CGTATATGCACGGTCTCGC 58.579 57.895 0.00 0.00 40.63 5.03
63 64 1.002250 CGTATATGCACGGTCTCGCC 61.002 60.000 0.00 0.00 40.63 5.54
64 65 0.031585 GTATATGCACGGTCTCGCCA 59.968 55.000 0.00 0.00 40.63 5.69
65 66 0.747852 TATATGCACGGTCTCGCCAA 59.252 50.000 0.00 0.00 40.63 4.52
66 67 0.530650 ATATGCACGGTCTCGCCAAG 60.531 55.000 0.00 0.00 40.63 3.61
67 68 1.884075 TATGCACGGTCTCGCCAAGT 61.884 55.000 0.00 0.00 40.63 3.16
68 69 2.665185 GCACGGTCTCGCCAAGTT 60.665 61.111 0.00 0.00 40.63 2.66
69 70 2.251642 GCACGGTCTCGCCAAGTTT 61.252 57.895 0.00 0.00 40.63 2.66
70 71 1.782028 GCACGGTCTCGCCAAGTTTT 61.782 55.000 0.00 0.00 40.63 2.43
71 72 1.504359 CACGGTCTCGCCAAGTTTTA 58.496 50.000 0.00 0.00 40.63 1.52
72 73 1.459592 CACGGTCTCGCCAAGTTTTAG 59.540 52.381 0.00 0.00 40.63 1.85
73 74 1.069668 ACGGTCTCGCCAAGTTTTAGT 59.930 47.619 0.00 0.00 40.63 2.24
74 75 2.297033 ACGGTCTCGCCAAGTTTTAGTA 59.703 45.455 0.00 0.00 40.63 1.82
75 76 3.056322 ACGGTCTCGCCAAGTTTTAGTAT 60.056 43.478 0.00 0.00 40.63 2.12
76 77 3.930848 CGGTCTCGCCAAGTTTTAGTATT 59.069 43.478 0.00 0.00 36.97 1.89
77 78 5.104374 CGGTCTCGCCAAGTTTTAGTATTA 58.896 41.667 0.00 0.00 36.97 0.98
78 79 5.231568 CGGTCTCGCCAAGTTTTAGTATTAG 59.768 44.000 0.00 0.00 36.97 1.73
79 80 6.104665 GGTCTCGCCAAGTTTTAGTATTAGT 58.895 40.000 0.00 0.00 37.17 2.24
80 81 6.592994 GGTCTCGCCAAGTTTTAGTATTAGTT 59.407 38.462 0.00 0.00 37.17 2.24
81 82 7.118825 GGTCTCGCCAAGTTTTAGTATTAGTTT 59.881 37.037 0.00 0.00 37.17 2.66
82 83 7.955864 GTCTCGCCAAGTTTTAGTATTAGTTTG 59.044 37.037 0.00 0.00 0.00 2.93
83 84 7.118680 TCTCGCCAAGTTTTAGTATTAGTTTGG 59.881 37.037 0.00 0.00 37.48 3.28
85 86 5.798434 GCCAAGTTTTAGTATTAGTTTGGCG 59.202 40.000 8.88 0.00 46.50 5.69
86 87 6.569035 GCCAAGTTTTAGTATTAGTTTGGCGT 60.569 38.462 8.88 0.00 46.50 5.68
87 88 7.361116 GCCAAGTTTTAGTATTAGTTTGGCGTA 60.361 37.037 8.88 0.00 46.50 4.42
88 89 8.671028 CCAAGTTTTAGTATTAGTTTGGCGTAT 58.329 33.333 0.00 0.00 0.00 3.06
97 98 8.789762 AGTATTAGTTTGGCGTATTTTTCAAGT 58.210 29.630 0.00 0.00 0.00 3.16
98 99 9.401873 GTATTAGTTTGGCGTATTTTTCAAGTT 57.598 29.630 0.00 0.00 0.00 2.66
99 100 7.917720 TTAGTTTGGCGTATTTTTCAAGTTC 57.082 32.000 0.00 0.00 0.00 3.01
100 101 5.897050 AGTTTGGCGTATTTTTCAAGTTCA 58.103 33.333 0.00 0.00 0.00 3.18
101 102 5.977129 AGTTTGGCGTATTTTTCAAGTTCAG 59.023 36.000 0.00 0.00 0.00 3.02
102 103 4.497473 TGGCGTATTTTTCAAGTTCAGG 57.503 40.909 0.00 0.00 0.00 3.86
103 104 3.242518 GGCGTATTTTTCAAGTTCAGGC 58.757 45.455 0.00 0.00 0.00 4.85
104 105 3.305064 GGCGTATTTTTCAAGTTCAGGCA 60.305 43.478 0.00 0.00 0.00 4.75
105 106 3.668656 GCGTATTTTTCAAGTTCAGGCAC 59.331 43.478 0.00 0.00 0.00 5.01
106 107 4.556699 GCGTATTTTTCAAGTTCAGGCACT 60.557 41.667 0.00 0.00 43.88 4.40
107 108 5.334569 GCGTATTTTTCAAGTTCAGGCACTA 60.335 40.000 0.00 0.00 36.02 2.74
108 109 6.664515 CGTATTTTTCAAGTTCAGGCACTAA 58.335 36.000 0.00 0.00 36.02 2.24
109 110 7.136119 CGTATTTTTCAAGTTCAGGCACTAAA 58.864 34.615 0.00 0.00 36.02 1.85
110 111 7.323656 CGTATTTTTCAAGTTCAGGCACTAAAG 59.676 37.037 0.00 0.00 36.02 1.85
111 112 6.524101 TTTTTCAAGTTCAGGCACTAAAGT 57.476 33.333 0.00 0.00 36.02 2.66
124 125 2.423577 ACTAAAGTGAACATCCACGGC 58.576 47.619 0.00 0.00 41.67 5.68
125 126 2.224426 ACTAAAGTGAACATCCACGGCA 60.224 45.455 0.00 0.00 41.67 5.69
126 127 1.686355 AAAGTGAACATCCACGGCAA 58.314 45.000 0.00 0.00 41.67 4.52
127 128 1.238439 AAGTGAACATCCACGGCAAG 58.762 50.000 0.00 0.00 41.67 4.01
128 129 0.108585 AGTGAACATCCACGGCAAGT 59.891 50.000 0.00 0.00 41.67 3.16
129 130 0.951558 GTGAACATCCACGGCAAGTT 59.048 50.000 0.00 0.00 0.00 2.66
130 131 1.069227 GTGAACATCCACGGCAAGTTC 60.069 52.381 0.00 0.00 39.11 3.01
131 132 1.234821 GAACATCCACGGCAAGTTCA 58.765 50.000 0.00 0.00 38.66 3.18
132 133 1.606668 GAACATCCACGGCAAGTTCAA 59.393 47.619 0.00 0.00 38.66 2.69
133 134 1.238439 ACATCCACGGCAAGTTCAAG 58.762 50.000 0.00 0.00 0.00 3.02
134 135 0.109597 CATCCACGGCAAGTTCAAGC 60.110 55.000 0.00 0.00 0.00 4.01
135 136 0.537143 ATCCACGGCAAGTTCAAGCA 60.537 50.000 0.00 0.00 0.00 3.91
136 137 1.008538 CCACGGCAAGTTCAAGCAC 60.009 57.895 0.00 0.00 0.00 4.40
137 138 1.008538 CACGGCAAGTTCAAGCACC 60.009 57.895 0.00 0.00 0.00 5.01
138 139 1.453015 ACGGCAAGTTCAAGCACCA 60.453 52.632 0.00 0.00 0.00 4.17
139 140 1.008538 CGGCAAGTTCAAGCACCAC 60.009 57.895 0.00 0.00 0.00 4.16
140 141 1.008538 GGCAAGTTCAAGCACCACG 60.009 57.895 0.00 0.00 0.00 4.94
141 142 1.008538 GCAAGTTCAAGCACCACGG 60.009 57.895 0.00 0.00 0.00 4.94
142 143 1.654220 CAAGTTCAAGCACCACGGG 59.346 57.895 0.00 0.00 0.00 5.28
143 144 1.101049 CAAGTTCAAGCACCACGGGT 61.101 55.000 0.00 0.00 35.62 5.28
183 184 2.995939 TCTCTCGATTTGTGCATGTCAC 59.004 45.455 11.79 11.79 45.82 3.67
188 189 2.981805 CGATTTGTGCATGTCACCTTTG 59.018 45.455 14.85 3.76 45.03 2.77
194 195 0.388907 GCATGTCACCTTTGCGCAAT 60.389 50.000 25.64 6.23 0.00 3.56
199 200 4.054825 ACCTTTGCGCAATGCCCG 62.055 61.111 25.64 15.30 45.60 6.13
209 210 2.116533 CAATGCCCGCTGCTGATCA 61.117 57.895 0.00 0.00 42.00 2.92
215 216 1.503542 CCGCTGCTGATCAACCAAC 59.496 57.895 0.00 0.00 0.00 3.77
217 218 0.806868 CGCTGCTGATCAACCAACAT 59.193 50.000 0.00 0.00 0.00 2.71
218 219 1.466866 CGCTGCTGATCAACCAACATG 60.467 52.381 0.00 0.00 0.00 3.21
233 234 3.264104 CAACATGGCTGCCAAAATTAGG 58.736 45.455 27.24 11.28 36.95 2.69
240 241 4.219725 TGGCTGCCAAAATTAGGTTTACTC 59.780 41.667 21.08 0.00 0.00 2.59
242 243 4.462834 GCTGCCAAAATTAGGTTTACTCCT 59.537 41.667 0.00 0.00 41.20 3.69
243 244 5.650703 GCTGCCAAAATTAGGTTTACTCCTA 59.349 40.000 0.00 0.00 38.86 2.94
244 245 6.183360 GCTGCCAAAATTAGGTTTACTCCTAG 60.183 42.308 0.00 0.00 40.58 3.02
270 271 6.760291 AGTAGGAGTAATAGTTATTGCCAGC 58.240 40.000 0.00 0.00 0.00 4.85
286 1712 4.254492 TGCCAGCAATATACGTACAAACA 58.746 39.130 0.00 0.00 0.00 2.83
325 1751 8.188531 TGTCAACAACTAATAAATACTACCGC 57.811 34.615 0.00 0.00 0.00 5.68
326 1752 7.009448 TGTCAACAACTAATAAATACTACCGCG 59.991 37.037 0.00 0.00 0.00 6.46
327 1753 7.009540 GTCAACAACTAATAAATACTACCGCGT 59.990 37.037 4.92 0.00 0.00 6.01
328 1754 6.817270 ACAACTAATAAATACTACCGCGTG 57.183 37.500 4.92 0.00 0.00 5.34
329 1755 5.750067 ACAACTAATAAATACTACCGCGTGG 59.250 40.000 14.93 14.93 42.84 4.94
330 1756 4.301628 ACTAATAAATACTACCGCGTGGC 58.698 43.478 16.69 0.00 39.70 5.01
331 1757 2.894763 ATAAATACTACCGCGTGGCA 57.105 45.000 16.69 0.00 39.70 4.92
332 1758 2.212869 TAAATACTACCGCGTGGCAG 57.787 50.000 16.69 15.16 39.70 4.85
333 1759 0.461339 AAATACTACCGCGTGGCAGG 60.461 55.000 19.28 10.14 39.70 4.85
334 1760 2.918230 AATACTACCGCGTGGCAGGC 62.918 60.000 21.49 21.49 39.70 4.85
346 1772 3.058160 GCAGGCGTGGTGAGCAAT 61.058 61.111 8.72 0.00 36.08 3.56
347 1773 3.044059 GCAGGCGTGGTGAGCAATC 62.044 63.158 8.72 0.00 36.08 2.67
348 1774 1.376424 CAGGCGTGGTGAGCAATCT 60.376 57.895 0.00 0.00 36.08 2.40
349 1775 0.957395 CAGGCGTGGTGAGCAATCTT 60.957 55.000 0.00 0.00 36.08 2.40
350 1776 0.674895 AGGCGTGGTGAGCAATCTTC 60.675 55.000 0.00 0.00 36.08 2.87
351 1777 1.421485 GCGTGGTGAGCAATCTTCG 59.579 57.895 0.00 0.00 34.19 3.79
352 1778 1.014044 GCGTGGTGAGCAATCTTCGA 61.014 55.000 0.00 0.00 34.19 3.71
353 1779 1.428448 CGTGGTGAGCAATCTTCGAA 58.572 50.000 0.00 0.00 0.00 3.71
354 1780 2.002586 CGTGGTGAGCAATCTTCGAAT 58.997 47.619 0.00 0.00 0.00 3.34
355 1781 2.029728 CGTGGTGAGCAATCTTCGAATC 59.970 50.000 0.00 0.00 0.00 2.52
356 1782 3.002791 GTGGTGAGCAATCTTCGAATCA 58.997 45.455 0.00 0.00 0.00 2.57
357 1783 3.624861 GTGGTGAGCAATCTTCGAATCAT 59.375 43.478 0.00 0.00 0.00 2.45
358 1784 4.095483 GTGGTGAGCAATCTTCGAATCATT 59.905 41.667 0.00 0.00 0.00 2.57
359 1785 4.333649 TGGTGAGCAATCTTCGAATCATTC 59.666 41.667 0.00 0.00 0.00 2.67
360 1786 4.333649 GGTGAGCAATCTTCGAATCATTCA 59.666 41.667 0.00 0.00 0.00 2.57
361 1787 5.163723 GGTGAGCAATCTTCGAATCATTCAA 60.164 40.000 0.00 0.00 0.00 2.69
362 1788 6.317088 GTGAGCAATCTTCGAATCATTCAAA 58.683 36.000 0.00 0.00 0.00 2.69
363 1789 6.803320 GTGAGCAATCTTCGAATCATTCAAAA 59.197 34.615 0.00 0.00 0.00 2.44
364 1790 7.326789 GTGAGCAATCTTCGAATCATTCAAAAA 59.673 33.333 0.00 0.00 0.00 1.94
423 1850 5.938125 TCCCTGTAAAACTTTGCTACAGATC 59.062 40.000 12.26 0.00 43.40 2.75
442 1869 6.206829 ACAGATCAAACTAAAACAAGCCCTAC 59.793 38.462 0.00 0.00 0.00 3.18
447 1874 6.547880 TCAAACTAAAACAAGCCCTACATGAA 59.452 34.615 0.00 0.00 0.00 2.57
457 1884 3.117550 AGCCCTACATGAATATGCAACCA 60.118 43.478 0.00 0.00 37.85 3.67
459 1886 4.717877 CCCTACATGAATATGCAACCAGA 58.282 43.478 0.00 0.00 37.85 3.86
540 1967 5.266733 AGTGTGGTTTTGTTCTAGTACGA 57.733 39.130 0.00 0.00 0.00 3.43
563 1990 5.411781 ACAGTTATTGTTCGCAAAACCAAA 58.588 33.333 0.00 0.00 40.90 3.28
564 1991 6.045955 ACAGTTATTGTTCGCAAAACCAAAT 58.954 32.000 0.00 0.00 40.90 2.32
565 1992 6.200097 ACAGTTATTGTTCGCAAAACCAAATC 59.800 34.615 0.00 0.00 40.90 2.17
569 1996 5.462034 TTGTTCGCAAAACCAAATCAAAG 57.538 34.783 0.00 0.00 33.58 2.77
603 2030 3.740115 GTTGCCAAGAGTCCAACTTCTA 58.260 45.455 3.54 0.00 36.73 2.10
604 2031 3.402628 TGCCAAGAGTCCAACTTCTAC 57.597 47.619 0.00 0.00 0.00 2.59
605 2032 2.038557 TGCCAAGAGTCCAACTTCTACC 59.961 50.000 0.00 0.00 0.00 3.18
606 2033 2.303311 GCCAAGAGTCCAACTTCTACCT 59.697 50.000 0.00 0.00 0.00 3.08
607 2034 3.617775 GCCAAGAGTCCAACTTCTACCTC 60.618 52.174 0.00 0.00 0.00 3.85
608 2035 3.578716 CCAAGAGTCCAACTTCTACCTCA 59.421 47.826 0.00 0.00 0.00 3.86
611 2038 6.070767 CCAAGAGTCCAACTTCTACCTCATTA 60.071 42.308 0.00 0.00 0.00 1.90
652 2080 4.903054 TGCTGATTGTGATCCCAGATATC 58.097 43.478 0.00 0.00 0.00 1.63
742 2178 0.596577 GAGCCTTCCCACGGAAAAAC 59.403 55.000 0.00 0.00 41.54 2.43
748 2184 0.882927 TCCCACGGAAAAACAGAGCG 60.883 55.000 0.00 0.00 0.00 5.03
779 2215 1.372997 ACTGCAGGTCTGTAACGCG 60.373 57.895 19.93 3.53 0.00 6.01
780 2216 2.048597 TGCAGGTCTGTAACGCGG 60.049 61.111 12.47 0.00 0.00 6.46
781 2217 2.260434 GCAGGTCTGTAACGCGGA 59.740 61.111 12.47 0.00 0.00 5.54
793 2229 2.505557 CGCGGACGTCCCTGTAAC 60.506 66.667 28.52 10.20 33.53 2.50
794 2230 2.505557 GCGGACGTCCCTGTAACG 60.506 66.667 28.52 15.63 45.37 3.18
795 2231 2.505557 CGGACGTCCCTGTAACGC 60.506 66.667 28.52 0.58 43.76 4.84
851 2287 1.454201 CGAGTACAGACAGCAGGAGA 58.546 55.000 0.00 0.00 0.00 3.71
852 2288 1.131504 CGAGTACAGACAGCAGGAGAC 59.868 57.143 0.00 0.00 0.00 3.36
853 2289 2.442413 GAGTACAGACAGCAGGAGACT 58.558 52.381 0.00 0.00 46.44 3.24
854 2290 2.422127 GAGTACAGACAGCAGGAGACTC 59.578 54.545 0.00 0.00 40.21 3.36
855 2291 1.474879 GTACAGACAGCAGGAGACTCC 59.525 57.143 14.15 14.15 40.21 3.85
856 2292 0.902516 ACAGACAGCAGGAGACTCCC 60.903 60.000 18.32 3.69 40.21 4.30
857 2293 1.305718 AGACAGCAGGAGACTCCCC 60.306 63.158 18.32 9.61 40.21 4.81
858 2294 1.610673 GACAGCAGGAGACTCCCCA 60.611 63.158 18.32 0.00 40.21 4.96
859 2295 1.893919 GACAGCAGGAGACTCCCCAC 61.894 65.000 18.32 7.83 40.21 4.61
860 2296 2.284995 AGCAGGAGACTCCCCACC 60.285 66.667 18.32 4.21 40.21 4.61
861 2297 2.607750 GCAGGAGACTCCCCACCA 60.608 66.667 18.32 0.00 40.21 4.17
862 2298 2.960688 GCAGGAGACTCCCCACCAC 61.961 68.421 18.32 0.00 40.21 4.16
863 2299 2.122954 AGGAGACTCCCCACCACC 59.877 66.667 18.32 0.00 37.19 4.61
864 2300 3.391382 GGAGACTCCCCACCACCG 61.391 72.222 10.74 0.00 0.00 4.94
865 2301 2.603776 GAGACTCCCCACCACCGT 60.604 66.667 0.00 0.00 0.00 4.83
866 2302 1.304713 GAGACTCCCCACCACCGTA 60.305 63.158 0.00 0.00 0.00 4.02
867 2303 0.901580 GAGACTCCCCACCACCGTAA 60.902 60.000 0.00 0.00 0.00 3.18
868 2304 1.190178 AGACTCCCCACCACCGTAAC 61.190 60.000 0.00 0.00 0.00 2.50
869 2305 2.176314 GACTCCCCACCACCGTAACC 62.176 65.000 0.00 0.00 0.00 2.85
870 2306 2.929477 TCCCCACCACCGTAACCC 60.929 66.667 0.00 0.00 0.00 4.11
871 2307 2.931649 CCCCACCACCGTAACCCT 60.932 66.667 0.00 0.00 0.00 4.34
872 2308 2.531601 CCCCACCACCGTAACCCTT 61.532 63.158 0.00 0.00 0.00 3.95
873 2309 1.002990 CCCACCACCGTAACCCTTC 60.003 63.158 0.00 0.00 0.00 3.46
874 2310 1.756024 CCACCACCGTAACCCTTCA 59.244 57.895 0.00 0.00 0.00 3.02
875 2311 0.604511 CCACCACCGTAACCCTTCAC 60.605 60.000 0.00 0.00 0.00 3.18
876 2312 0.107081 CACCACCGTAACCCTTCACA 59.893 55.000 0.00 0.00 0.00 3.58
877 2313 0.395312 ACCACCGTAACCCTTCACAG 59.605 55.000 0.00 0.00 0.00 3.66
878 2314 0.953960 CCACCGTAACCCTTCACAGC 60.954 60.000 0.00 0.00 0.00 4.40
879 2315 0.953960 CACCGTAACCCTTCACAGCC 60.954 60.000 0.00 0.00 0.00 4.85
880 2316 1.125711 ACCGTAACCCTTCACAGCCT 61.126 55.000 0.00 0.00 0.00 4.58
881 2317 0.673644 CCGTAACCCTTCACAGCCTG 60.674 60.000 0.00 0.00 0.00 4.85
882 2318 0.034896 CGTAACCCTTCACAGCCTGT 59.965 55.000 0.00 0.00 0.00 4.00
883 2319 1.274167 CGTAACCCTTCACAGCCTGTA 59.726 52.381 0.00 0.00 0.00 2.74
884 2320 2.696506 GTAACCCTTCACAGCCTGTAC 58.303 52.381 0.00 0.00 0.00 2.90
885 2321 1.136828 AACCCTTCACAGCCTGTACA 58.863 50.000 0.00 0.00 0.00 2.90
912 2348 1.546476 CCTCTCCACAGTAACGCTTCT 59.454 52.381 0.00 0.00 0.00 2.85
925 2361 4.457834 AACGCTTCTATAACTGCTCACT 57.542 40.909 0.00 0.00 0.00 3.41
1028 2472 4.853924 TCCAACCAAAAAGATCTCAAGC 57.146 40.909 0.00 0.00 0.00 4.01
1078 2522 0.944311 GCACGCGTGGAGAAGAGAAA 60.944 55.000 37.47 0.00 0.00 2.52
1087 2531 2.158769 TGGAGAAGAGAAACAGCAAGCA 60.159 45.455 0.00 0.00 0.00 3.91
1111 2555 1.274069 TGGCCAAGATCTCCTTCCTCT 60.274 52.381 0.61 0.00 31.42 3.69
1160 2604 1.901654 TTCCCCGTGGTAATCACCCG 61.902 60.000 0.00 0.00 45.11 5.28
1167 2611 1.298667 GGTAATCACCCGTGCCACT 59.701 57.895 0.00 0.00 39.11 4.00
1177 2621 2.343758 GTGCCACTTCGCCTCTCA 59.656 61.111 0.00 0.00 0.00 3.27
1211 2661 2.691526 AGCCATGCATGTATGTTTCCTG 59.308 45.455 24.58 6.89 0.00 3.86
1226 2676 1.374758 CCTGAACTCACCGGTGCTC 60.375 63.158 30.25 23.43 0.00 4.26
1227 2677 1.668294 CTGAACTCACCGGTGCTCT 59.332 57.895 30.25 15.47 0.00 4.09
1228 2678 0.034059 CTGAACTCACCGGTGCTCTT 59.966 55.000 30.25 18.90 0.00 2.85
1339 2814 3.803082 TCTCTGCATTTGCCGCGC 61.803 61.111 0.00 0.00 41.18 6.86
1347 2822 2.740714 ATTTGCCGCGCTTCGTCTC 61.741 57.895 5.56 0.00 36.19 3.36
1356 2831 0.663568 CGCTTCGTCTCGTTTGGTCT 60.664 55.000 0.00 0.00 0.00 3.85
1386 2870 9.868277 TTCTTTTAACTGATGATGTTTTTGTGT 57.132 25.926 0.00 0.00 0.00 3.72
1391 2875 4.024048 ACTGATGATGTTTTTGTGTCGGTC 60.024 41.667 0.00 0.00 0.00 4.79
1404 2891 2.740055 CGGTCTGTGCAGAGTGCC 60.740 66.667 11.09 12.90 44.23 5.01
1627 3143 4.043200 GGTGCCAGCTTGCGGTTC 62.043 66.667 5.19 0.00 0.00 3.62
1641 3157 4.209307 TGCGGTTCATGGTTATTCACTA 57.791 40.909 0.00 0.00 0.00 2.74
1713 3241 1.824230 GCATGTGAATTGCCCTACCAA 59.176 47.619 0.00 0.00 33.95 3.67
1717 3245 5.221501 GCATGTGAATTGCCCTACCAATTAT 60.222 40.000 0.00 0.00 43.41 1.28
1719 3247 4.892934 TGTGAATTGCCCTACCAATTATCC 59.107 41.667 0.63 0.00 43.41 2.59
1733 3261 6.650120 ACCAATTATCCGTGTTTCTATCAGT 58.350 36.000 0.00 0.00 0.00 3.41
1734 3262 7.788026 ACCAATTATCCGTGTTTCTATCAGTA 58.212 34.615 0.00 0.00 0.00 2.74
1735 3263 7.926555 ACCAATTATCCGTGTTTCTATCAGTAG 59.073 37.037 0.00 0.00 0.00 2.57
1736 3264 7.385205 CCAATTATCCGTGTTTCTATCAGTAGG 59.615 40.741 0.00 0.00 0.00 3.18
1737 3265 7.834881 ATTATCCGTGTTTCTATCAGTAGGA 57.165 36.000 0.00 0.00 0.00 2.94
1738 3266 4.978083 TCCGTGTTTCTATCAGTAGGAC 57.022 45.455 0.00 0.00 0.00 3.85
1787 3323 4.899502 CCACATGATTATAGTGGGACCTC 58.100 47.826 0.00 0.00 46.98 3.85
1991 3537 4.314522 TTGATACAGAGGCCATCCAAAA 57.685 40.909 5.01 0.00 33.74 2.44
1995 3541 0.804989 CAGAGGCCATCCAAAACGAC 59.195 55.000 5.01 0.00 33.74 4.34
1996 3542 0.322546 AGAGGCCATCCAAAACGACC 60.323 55.000 5.01 0.00 33.74 4.79
1997 3543 0.608035 GAGGCCATCCAAAACGACCA 60.608 55.000 5.01 0.00 33.74 4.02
1998 3544 0.893727 AGGCCATCCAAAACGACCAC 60.894 55.000 5.01 0.00 33.74 4.16
1999 3545 0.893727 GGCCATCCAAAACGACCACT 60.894 55.000 0.00 0.00 0.00 4.00
2000 3546 0.958822 GCCATCCAAAACGACCACTT 59.041 50.000 0.00 0.00 0.00 3.16
2001 3547 2.156098 GCCATCCAAAACGACCACTTA 58.844 47.619 0.00 0.00 0.00 2.24
2002 3548 2.095415 GCCATCCAAAACGACCACTTAC 60.095 50.000 0.00 0.00 0.00 2.34
2003 3549 2.486592 CCATCCAAAACGACCACTTACC 59.513 50.000 0.00 0.00 0.00 2.85
2004 3550 1.868469 TCCAAAACGACCACTTACCG 58.132 50.000 0.00 0.00 0.00 4.02
2005 3551 0.236449 CCAAAACGACCACTTACCGC 59.764 55.000 0.00 0.00 0.00 5.68
2006 3552 0.938713 CAAAACGACCACTTACCGCA 59.061 50.000 0.00 0.00 0.00 5.69
2007 3553 1.070175 CAAAACGACCACTTACCGCAG 60.070 52.381 0.00 0.00 0.00 5.18
2008 3554 0.105408 AAACGACCACTTACCGCAGT 59.895 50.000 0.00 0.00 0.00 4.40
2009 3555 0.599204 AACGACCACTTACCGCAGTG 60.599 55.000 0.00 0.00 43.46 3.66
2010 3556 1.006571 CGACCACTTACCGCAGTGT 60.007 57.895 1.72 0.00 42.45 3.55
2011 3557 0.599204 CGACCACTTACCGCAGTGTT 60.599 55.000 1.72 0.00 42.45 3.32
2012 3558 1.589803 GACCACTTACCGCAGTGTTT 58.410 50.000 1.72 0.00 42.45 2.83
2013 3559 1.263217 GACCACTTACCGCAGTGTTTG 59.737 52.381 1.72 0.00 42.45 2.93
2014 3560 1.305201 CCACTTACCGCAGTGTTTGT 58.695 50.000 1.72 0.00 42.45 2.83
2015 3561 1.673920 CCACTTACCGCAGTGTTTGTT 59.326 47.619 1.72 0.00 42.45 2.83
2016 3562 2.098443 CCACTTACCGCAGTGTTTGTTT 59.902 45.455 1.72 0.00 42.45 2.83
2017 3563 3.105203 CACTTACCGCAGTGTTTGTTTG 58.895 45.455 0.00 0.00 39.59 2.93
2018 3564 2.750712 ACTTACCGCAGTGTTTGTTTGT 59.249 40.909 0.00 0.00 0.00 2.83
2019 3565 3.191791 ACTTACCGCAGTGTTTGTTTGTT 59.808 39.130 0.00 0.00 0.00 2.83
2020 3566 4.395542 ACTTACCGCAGTGTTTGTTTGTTA 59.604 37.500 0.00 0.00 0.00 2.41
2021 3567 5.066764 ACTTACCGCAGTGTTTGTTTGTTAT 59.933 36.000 0.00 0.00 0.00 1.89
2022 3568 3.701241 ACCGCAGTGTTTGTTTGTTATG 58.299 40.909 0.00 0.00 0.00 1.90
2023 3569 3.049206 CCGCAGTGTTTGTTTGTTATGG 58.951 45.455 0.00 0.00 0.00 2.74
2024 3570 3.049206 CGCAGTGTTTGTTTGTTATGGG 58.951 45.455 0.00 0.00 0.00 4.00
2025 3571 3.243234 CGCAGTGTTTGTTTGTTATGGGA 60.243 43.478 0.00 0.00 0.00 4.37
2026 3572 4.298332 GCAGTGTTTGTTTGTTATGGGAG 58.702 43.478 0.00 0.00 0.00 4.30
2027 3573 4.037446 GCAGTGTTTGTTTGTTATGGGAGA 59.963 41.667 0.00 0.00 0.00 3.71
2028 3574 5.451242 GCAGTGTTTGTTTGTTATGGGAGAA 60.451 40.000 0.00 0.00 0.00 2.87
2029 3575 6.208644 CAGTGTTTGTTTGTTATGGGAGAAG 58.791 40.000 0.00 0.00 0.00 2.85
2030 3576 4.982295 GTGTTTGTTTGTTATGGGAGAAGC 59.018 41.667 0.00 0.00 0.00 3.86
2031 3577 4.646945 TGTTTGTTTGTTATGGGAGAAGCA 59.353 37.500 0.00 0.00 0.00 3.91
2032 3578 5.127845 TGTTTGTTTGTTATGGGAGAAGCAA 59.872 36.000 0.00 0.00 0.00 3.91
2033 3579 5.860941 TTGTTTGTTATGGGAGAAGCAAA 57.139 34.783 0.00 0.00 0.00 3.68
2034 3580 6.418057 TTGTTTGTTATGGGAGAAGCAAAT 57.582 33.333 0.00 0.00 0.00 2.32
2035 3581 6.418057 TGTTTGTTATGGGAGAAGCAAATT 57.582 33.333 0.00 0.00 0.00 1.82
2036 3582 6.825610 TGTTTGTTATGGGAGAAGCAAATTT 58.174 32.000 0.00 0.00 0.00 1.82
2037 3583 7.957002 TGTTTGTTATGGGAGAAGCAAATTTA 58.043 30.769 0.00 0.00 0.00 1.40
2038 3584 8.592809 TGTTTGTTATGGGAGAAGCAAATTTAT 58.407 29.630 0.00 0.00 0.00 1.40
2039 3585 9.435688 GTTTGTTATGGGAGAAGCAAATTTATT 57.564 29.630 0.00 0.00 0.00 1.40
2054 3600 7.036996 CAAATTTATTTTTGCCTGTTTGGGT 57.963 32.000 0.00 0.00 36.00 4.51
2055 3601 6.631971 AATTTATTTTTGCCTGTTTGGGTG 57.368 33.333 0.00 0.00 36.00 4.61
2056 3602 5.359194 TTTATTTTTGCCTGTTTGGGTGA 57.641 34.783 0.00 0.00 36.00 4.02
2057 3603 5.559148 TTATTTTTGCCTGTTTGGGTGAT 57.441 34.783 0.00 0.00 36.00 3.06
2058 3604 3.922171 TTTTTGCCTGTTTGGGTGATT 57.078 38.095 0.00 0.00 36.00 2.57
2059 3605 5.559148 ATTTTTGCCTGTTTGGGTGATTA 57.441 34.783 0.00 0.00 36.00 1.75
2060 3606 5.359194 TTTTTGCCTGTTTGGGTGATTAA 57.641 34.783 0.00 0.00 36.00 1.40
2061 3607 5.359194 TTTTGCCTGTTTGGGTGATTAAA 57.641 34.783 0.00 0.00 36.00 1.52
2062 3608 5.559148 TTTGCCTGTTTGGGTGATTAAAT 57.441 34.783 0.00 0.00 36.00 1.40
2063 3609 5.559148 TTGCCTGTTTGGGTGATTAAATT 57.441 34.783 0.00 0.00 36.00 1.82
2064 3610 4.892433 TGCCTGTTTGGGTGATTAAATTG 58.108 39.130 0.00 0.00 36.00 2.32
2065 3611 4.252878 GCCTGTTTGGGTGATTAAATTGG 58.747 43.478 0.00 0.00 36.00 3.16
2066 3612 4.020662 GCCTGTTTGGGTGATTAAATTGGA 60.021 41.667 0.00 0.00 36.00 3.53
2067 3613 5.723295 CCTGTTTGGGTGATTAAATTGGAG 58.277 41.667 0.00 0.00 0.00 3.86
2068 3614 5.337491 CCTGTTTGGGTGATTAAATTGGAGG 60.337 44.000 0.00 0.00 0.00 4.30
2069 3615 4.530161 TGTTTGGGTGATTAAATTGGAGGG 59.470 41.667 0.00 0.00 0.00 4.30
2070 3616 2.745968 TGGGTGATTAAATTGGAGGGC 58.254 47.619 0.00 0.00 0.00 5.19
2071 3617 2.314549 TGGGTGATTAAATTGGAGGGCT 59.685 45.455 0.00 0.00 0.00 5.19
2072 3618 2.695147 GGGTGATTAAATTGGAGGGCTG 59.305 50.000 0.00 0.00 0.00 4.85
2073 3619 2.101415 GGTGATTAAATTGGAGGGCTGC 59.899 50.000 0.00 0.00 0.00 5.25
2074 3620 2.760092 GTGATTAAATTGGAGGGCTGCA 59.240 45.455 0.50 0.00 0.00 4.41
2075 3621 2.760092 TGATTAAATTGGAGGGCTGCAC 59.240 45.455 0.50 0.00 0.00 4.57
2076 3622 1.173043 TTAAATTGGAGGGCTGCACG 58.827 50.000 0.50 0.00 0.00 5.34
2077 3623 1.312371 TAAATTGGAGGGCTGCACGC 61.312 55.000 0.50 0.00 38.13 5.34
2078 3624 3.574074 AATTGGAGGGCTGCACGCT 62.574 57.895 5.44 6.80 45.84 5.07
2079 3625 3.574074 ATTGGAGGGCTGCACGCTT 62.574 57.895 5.44 0.00 42.62 4.68
2080 3626 2.196997 ATTGGAGGGCTGCACGCTTA 62.197 55.000 5.44 0.00 42.62 3.09
2081 3627 2.046314 GGAGGGCTGCACGCTTAA 60.046 61.111 5.44 0.00 42.62 1.85
2082 3628 1.452108 GGAGGGCTGCACGCTTAAT 60.452 57.895 5.44 0.00 42.62 1.40
2083 3629 1.032114 GGAGGGCTGCACGCTTAATT 61.032 55.000 5.44 0.00 42.62 1.40
2084 3630 0.099436 GAGGGCTGCACGCTTAATTG 59.901 55.000 0.50 0.00 42.62 2.32
2085 3631 1.139520 GGGCTGCACGCTTAATTGG 59.860 57.895 0.50 0.00 39.13 3.16
2086 3632 1.312371 GGGCTGCACGCTTAATTGGA 61.312 55.000 0.50 0.00 39.13 3.53
2087 3633 0.740737 GGCTGCACGCTTAATTGGAT 59.259 50.000 0.50 0.00 39.13 3.41
2088 3634 1.134946 GGCTGCACGCTTAATTGGATT 59.865 47.619 0.50 0.00 39.13 3.01
2093 3639 4.203226 TGCACGCTTAATTGGATTATGGA 58.797 39.130 0.00 0.00 0.00 3.41
2115 3661 2.688446 TCCGACCATGTCACATCTAGAC 59.312 50.000 0.00 0.00 36.55 2.59
2187 3735 4.875536 CCCCCTTCACTTGTTTTCTTTTTG 59.124 41.667 0.00 0.00 0.00 2.44
2188 3736 4.875536 CCCCTTCACTTGTTTTCTTTTTGG 59.124 41.667 0.00 0.00 0.00 3.28
2192 3740 7.360861 CCCTTCACTTGTTTTCTTTTTGGTTTC 60.361 37.037 0.00 0.00 0.00 2.78
2232 3785 6.428159 ACAAGAAAGCTATCACGATTCAAGTT 59.572 34.615 0.00 0.00 0.00 2.66
2236 3789 5.330455 AGCTATCACGATTCAAGTTCAGA 57.670 39.130 0.00 0.00 0.00 3.27
2300 3887 4.954875 AGCTACTGTAGATCAATCAAGGC 58.045 43.478 18.64 0.00 0.00 4.35
2322 3909 2.620242 CTTGCTTGTGTGCTTGGTTTT 58.380 42.857 0.00 0.00 0.00 2.43
2347 3934 2.769617 CTTTGCACGTACGAGCGG 59.230 61.111 27.99 18.25 34.50 5.52
2348 3935 2.019951 CTTTGCACGTACGAGCGGT 61.020 57.895 27.99 1.15 34.50 5.68
2721 6778 2.158623 TGTTTCAGCCCAGTTGTGAGAT 60.159 45.455 0.00 0.00 0.00 2.75
2722 6779 2.887152 GTTTCAGCCCAGTTGTGAGATT 59.113 45.455 0.00 0.00 0.00 2.40
2803 6860 4.033932 GGACTTGCAATTGTGTCCAAAAAC 59.966 41.667 27.01 11.10 45.87 2.43
2807 6864 3.801050 TGCAATTGTGTCCAAAAACATCG 59.199 39.130 7.40 0.00 33.44 3.84
2896 6955 2.029918 GTCAATGGGGAACTTGCAACTC 60.030 50.000 0.00 0.00 0.00 3.01
2897 6956 1.962807 CAATGGGGAACTTGCAACTCA 59.037 47.619 0.00 0.00 0.00 3.41
2908 6968 6.347644 GGAACTTGCAACTCATTAAAAATGGC 60.348 38.462 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.368145 ACATAAAGTACATCGACATGGCAT 58.632 37.500 0.00 0.00 33.82 4.40
3 4 5.050490 AGACATAAAGTACATCGACATGGC 58.950 41.667 0.00 0.00 33.82 4.40
4 5 6.359883 CGTAGACATAAAGTACATCGACATGG 59.640 42.308 0.00 0.00 33.82 3.66
5 6 6.359883 CCGTAGACATAAAGTACATCGACATG 59.640 42.308 0.00 0.00 35.92 3.21
6 7 6.261603 TCCGTAGACATAAAGTACATCGACAT 59.738 38.462 0.00 0.00 0.00 3.06
7 8 5.585844 TCCGTAGACATAAAGTACATCGACA 59.414 40.000 0.00 0.00 0.00 4.35
8 9 5.906285 GTCCGTAGACATAAAGTACATCGAC 59.094 44.000 0.00 0.00 42.99 4.20
9 10 6.052840 GTCCGTAGACATAAAGTACATCGA 57.947 41.667 0.00 0.00 42.99 3.59
23 24 3.381949 GGTGCTAATCATGTCCGTAGAC 58.618 50.000 0.00 0.00 43.83 2.59
24 25 2.034179 CGGTGCTAATCATGTCCGTAGA 59.966 50.000 0.00 0.00 34.38 2.59
25 26 2.394708 CGGTGCTAATCATGTCCGTAG 58.605 52.381 0.00 0.00 34.38 3.51
26 27 2.502213 CGGTGCTAATCATGTCCGTA 57.498 50.000 0.00 0.00 34.38 4.02
27 28 0.535335 ACGGTGCTAATCATGTCCGT 59.465 50.000 0.00 0.00 44.87 4.69
28 29 2.502213 TACGGTGCTAATCATGTCCG 57.498 50.000 0.00 0.00 42.94 4.79
29 30 4.330074 GCATATACGGTGCTAATCATGTCC 59.670 45.833 0.00 0.00 39.45 4.02
30 31 4.929211 TGCATATACGGTGCTAATCATGTC 59.071 41.667 0.00 0.00 42.92 3.06
31 32 4.690748 GTGCATATACGGTGCTAATCATGT 59.309 41.667 0.00 0.00 42.92 3.21
32 33 4.201618 CGTGCATATACGGTGCTAATCATG 60.202 45.833 0.00 0.00 42.92 3.07
33 34 3.926527 CGTGCATATACGGTGCTAATCAT 59.073 43.478 0.00 0.00 42.92 2.45
34 35 3.313690 CGTGCATATACGGTGCTAATCA 58.686 45.455 0.00 0.00 42.92 2.57
35 36 3.972706 CGTGCATATACGGTGCTAATC 57.027 47.619 0.00 0.00 42.92 1.75
44 45 1.002250 GGCGAGACCGTGCATATACG 61.002 60.000 0.00 0.00 43.35 3.06
45 46 0.031585 TGGCGAGACCGTGCATATAC 59.968 55.000 0.00 0.00 43.94 1.47
46 47 0.747852 TTGGCGAGACCGTGCATATA 59.252 50.000 0.00 0.00 43.94 0.86
47 48 0.530650 CTTGGCGAGACCGTGCATAT 60.531 55.000 0.00 0.00 43.94 1.78
48 49 1.153647 CTTGGCGAGACCGTGCATA 60.154 57.895 0.00 0.00 43.94 3.14
49 50 2.434884 CTTGGCGAGACCGTGCAT 60.435 61.111 0.00 0.00 43.94 3.96
50 51 2.933878 AAACTTGGCGAGACCGTGCA 62.934 55.000 9.20 0.00 43.94 4.57
51 52 1.782028 AAAACTTGGCGAGACCGTGC 61.782 55.000 9.20 0.00 43.94 5.34
52 53 1.459592 CTAAAACTTGGCGAGACCGTG 59.540 52.381 9.20 0.00 43.94 4.94
53 54 1.069668 ACTAAAACTTGGCGAGACCGT 59.930 47.619 9.20 0.00 43.94 4.83
54 55 1.792006 ACTAAAACTTGGCGAGACCG 58.208 50.000 9.20 0.00 43.94 4.79
55 56 6.104665 ACTAATACTAAAACTTGGCGAGACC 58.895 40.000 9.20 0.00 39.84 3.85
56 57 7.592439 AACTAATACTAAAACTTGGCGAGAC 57.408 36.000 9.20 0.00 0.00 3.36
57 58 7.118680 CCAAACTAATACTAAAACTTGGCGAGA 59.881 37.037 9.20 0.00 0.00 4.04
58 59 7.241376 CCAAACTAATACTAAAACTTGGCGAG 58.759 38.462 0.00 0.00 0.00 5.03
59 60 6.348704 GCCAAACTAATACTAAAACTTGGCGA 60.349 38.462 6.73 0.00 45.63 5.54
60 61 5.798434 GCCAAACTAATACTAAAACTTGGCG 59.202 40.000 6.73 0.00 45.63 5.69
62 63 6.905578 ACGCCAAACTAATACTAAAACTTGG 58.094 36.000 0.00 0.00 36.08 3.61
71 72 8.789762 ACTTGAAAAATACGCCAAACTAATACT 58.210 29.630 0.00 0.00 0.00 2.12
72 73 8.959734 ACTTGAAAAATACGCCAAACTAATAC 57.040 30.769 0.00 0.00 0.00 1.89
73 74 9.615295 GAACTTGAAAAATACGCCAAACTAATA 57.385 29.630 0.00 0.00 0.00 0.98
74 75 8.138712 TGAACTTGAAAAATACGCCAAACTAAT 58.861 29.630 0.00 0.00 0.00 1.73
75 76 7.481642 TGAACTTGAAAAATACGCCAAACTAA 58.518 30.769 0.00 0.00 0.00 2.24
76 77 7.028926 TGAACTTGAAAAATACGCCAAACTA 57.971 32.000 0.00 0.00 0.00 2.24
77 78 5.897050 TGAACTTGAAAAATACGCCAAACT 58.103 33.333 0.00 0.00 0.00 2.66
78 79 5.174943 CCTGAACTTGAAAAATACGCCAAAC 59.825 40.000 0.00 0.00 0.00 2.93
79 80 5.285651 CCTGAACTTGAAAAATACGCCAAA 58.714 37.500 0.00 0.00 0.00 3.28
80 81 4.794655 GCCTGAACTTGAAAAATACGCCAA 60.795 41.667 0.00 0.00 0.00 4.52
81 82 3.305064 GCCTGAACTTGAAAAATACGCCA 60.305 43.478 0.00 0.00 0.00 5.69
82 83 3.242518 GCCTGAACTTGAAAAATACGCC 58.757 45.455 0.00 0.00 0.00 5.68
83 84 3.668656 GTGCCTGAACTTGAAAAATACGC 59.331 43.478 0.00 0.00 0.00 4.42
84 85 5.108385 AGTGCCTGAACTTGAAAAATACG 57.892 39.130 0.00 0.00 0.00 3.06
85 86 8.135529 ACTTTAGTGCCTGAACTTGAAAAATAC 58.864 33.333 0.00 0.00 0.00 1.89
86 87 8.134895 CACTTTAGTGCCTGAACTTGAAAAATA 58.865 33.333 0.00 0.00 39.39 1.40
87 88 6.980397 CACTTTAGTGCCTGAACTTGAAAAAT 59.020 34.615 0.00 0.00 39.39 1.82
88 89 6.151985 TCACTTTAGTGCCTGAACTTGAAAAA 59.848 34.615 5.00 0.00 45.25 1.94
89 90 5.650266 TCACTTTAGTGCCTGAACTTGAAAA 59.350 36.000 5.00 0.00 45.25 2.29
90 91 5.189928 TCACTTTAGTGCCTGAACTTGAAA 58.810 37.500 5.00 0.00 45.25 2.69
91 92 4.776349 TCACTTTAGTGCCTGAACTTGAA 58.224 39.130 5.00 0.00 45.25 2.69
92 93 4.415881 TCACTTTAGTGCCTGAACTTGA 57.584 40.909 5.00 0.00 45.25 3.02
93 94 4.335315 TGTTCACTTTAGTGCCTGAACTTG 59.665 41.667 5.00 0.00 45.25 3.16
94 95 4.523083 TGTTCACTTTAGTGCCTGAACTT 58.477 39.130 5.00 0.00 45.25 2.66
95 96 4.150897 TGTTCACTTTAGTGCCTGAACT 57.849 40.909 5.00 0.00 45.25 3.01
96 97 4.083271 GGATGTTCACTTTAGTGCCTGAAC 60.083 45.833 5.00 5.38 45.25 3.18
97 98 4.072131 GGATGTTCACTTTAGTGCCTGAA 58.928 43.478 5.00 0.00 45.25 3.02
98 99 3.072330 TGGATGTTCACTTTAGTGCCTGA 59.928 43.478 5.00 0.00 45.25 3.86
99 100 3.189287 GTGGATGTTCACTTTAGTGCCTG 59.811 47.826 5.00 0.00 45.25 4.85
100 101 3.412386 GTGGATGTTCACTTTAGTGCCT 58.588 45.455 5.00 0.00 45.25 4.75
101 102 2.159627 CGTGGATGTTCACTTTAGTGCC 59.840 50.000 5.00 1.45 45.25 5.01
102 103 2.159627 CCGTGGATGTTCACTTTAGTGC 59.840 50.000 5.00 0.00 45.25 4.40
103 104 2.159627 GCCGTGGATGTTCACTTTAGTG 59.840 50.000 3.47 3.47 46.91 2.74
104 105 2.224426 TGCCGTGGATGTTCACTTTAGT 60.224 45.455 0.00 0.00 35.63 2.24
105 106 2.422597 TGCCGTGGATGTTCACTTTAG 58.577 47.619 0.00 0.00 35.63 1.85
106 107 2.552599 TGCCGTGGATGTTCACTTTA 57.447 45.000 0.00 0.00 35.63 1.85
107 108 1.608590 CTTGCCGTGGATGTTCACTTT 59.391 47.619 0.00 0.00 35.63 2.66
108 109 1.238439 CTTGCCGTGGATGTTCACTT 58.762 50.000 0.00 0.00 35.63 3.16
109 110 0.108585 ACTTGCCGTGGATGTTCACT 59.891 50.000 0.00 0.00 35.63 3.41
110 111 0.951558 AACTTGCCGTGGATGTTCAC 59.048 50.000 0.00 0.00 0.00 3.18
111 112 1.234821 GAACTTGCCGTGGATGTTCA 58.765 50.000 14.34 0.00 37.52 3.18
112 113 1.234821 TGAACTTGCCGTGGATGTTC 58.765 50.000 13.17 13.17 37.92 3.18
113 114 1.608590 CTTGAACTTGCCGTGGATGTT 59.391 47.619 0.00 0.00 0.00 2.71
114 115 1.238439 CTTGAACTTGCCGTGGATGT 58.762 50.000 0.00 0.00 0.00 3.06
115 116 0.109597 GCTTGAACTTGCCGTGGATG 60.110 55.000 0.00 0.00 0.00 3.51
116 117 0.537143 TGCTTGAACTTGCCGTGGAT 60.537 50.000 0.00 0.00 0.00 3.41
117 118 1.153066 TGCTTGAACTTGCCGTGGA 60.153 52.632 0.00 0.00 0.00 4.02
118 119 1.008538 GTGCTTGAACTTGCCGTGG 60.009 57.895 0.00 0.00 0.00 4.94
119 120 1.008538 GGTGCTTGAACTTGCCGTG 60.009 57.895 0.00 0.00 0.00 4.94
120 121 1.453015 TGGTGCTTGAACTTGCCGT 60.453 52.632 0.00 0.00 0.00 5.68
121 122 1.008538 GTGGTGCTTGAACTTGCCG 60.009 57.895 0.00 0.00 0.00 5.69
122 123 1.008538 CGTGGTGCTTGAACTTGCC 60.009 57.895 0.00 0.00 0.00 4.52
123 124 1.008538 CCGTGGTGCTTGAACTTGC 60.009 57.895 0.00 0.00 0.00 4.01
124 125 1.101049 ACCCGTGGTGCTTGAACTTG 61.101 55.000 0.00 0.00 32.98 3.16
125 126 1.226262 ACCCGTGGTGCTTGAACTT 59.774 52.632 0.00 0.00 32.98 2.66
126 127 2.915869 ACCCGTGGTGCTTGAACT 59.084 55.556 0.00 0.00 32.98 3.01
135 136 2.543635 AGAGGTAAATACACCCGTGGT 58.456 47.619 0.00 0.00 39.62 4.16
136 137 4.950205 ATAGAGGTAAATACACCCGTGG 57.050 45.455 0.00 0.00 39.62 4.94
137 138 7.046033 AGAAAATAGAGGTAAATACACCCGTG 58.954 38.462 0.00 0.00 39.62 4.94
138 139 7.125356 AGAGAAAATAGAGGTAAATACACCCGT 59.875 37.037 0.00 0.00 39.62 5.28
139 140 7.498443 AGAGAAAATAGAGGTAAATACACCCG 58.502 38.462 0.00 0.00 39.62 5.28
140 141 8.706521 AGAGAGAAAATAGAGGTAAATACACCC 58.293 37.037 0.00 0.00 39.62 4.61
141 142 9.752961 GAGAGAGAAAATAGAGGTAAATACACC 57.247 37.037 0.00 0.00 39.02 4.16
142 143 9.453325 CGAGAGAGAAAATAGAGGTAAATACAC 57.547 37.037 0.00 0.00 0.00 2.90
143 144 9.404848 TCGAGAGAGAAAATAGAGGTAAATACA 57.595 33.333 0.00 0.00 34.84 2.29
199 200 1.135199 CCATGTTGGTTGATCAGCAGC 60.135 52.381 11.93 7.83 33.34 5.25
209 210 0.835941 TTTTGGCAGCCATGTTGGTT 59.164 45.000 17.09 0.00 40.46 3.67
215 216 3.615224 AACCTAATTTTGGCAGCCATG 57.385 42.857 17.09 1.71 31.53 3.66
217 218 4.156477 AGTAAACCTAATTTTGGCAGCCA 58.844 39.130 11.22 11.22 0.00 4.75
218 219 4.381612 GGAGTAAACCTAATTTTGGCAGCC 60.382 45.833 3.66 3.66 0.00 4.85
243 244 9.080097 CTGGCAATAACTATTACTCCTACTACT 57.920 37.037 0.00 0.00 0.00 2.57
244 245 7.813627 GCTGGCAATAACTATTACTCCTACTAC 59.186 40.741 0.00 0.00 0.00 2.73
263 264 4.695928 TGTTTGTACGTATATTGCTGGCAA 59.304 37.500 10.48 10.48 40.47 4.52
264 265 4.093703 GTGTTTGTACGTATATTGCTGGCA 59.906 41.667 0.00 0.00 0.00 4.92
265 266 4.093703 TGTGTTTGTACGTATATTGCTGGC 59.906 41.667 0.00 0.00 0.00 4.85
267 268 6.899771 GTCATGTGTTTGTACGTATATTGCTG 59.100 38.462 0.00 0.00 0.00 4.41
268 269 6.592220 TGTCATGTGTTTGTACGTATATTGCT 59.408 34.615 0.00 0.00 0.00 3.91
270 271 9.767684 AATTGTCATGTGTTTGTACGTATATTG 57.232 29.630 0.00 0.00 0.00 1.90
299 1725 8.823818 GCGGTAGTATTTATTAGTTGTTGACAT 58.176 33.333 0.00 0.00 0.00 3.06
301 1727 7.009540 ACGCGGTAGTATTTATTAGTTGTTGAC 59.990 37.037 12.47 0.00 0.00 3.18
310 1736 4.300803 CTGCCACGCGGTAGTATTTATTA 58.699 43.478 12.47 0.00 40.01 0.98
311 1737 3.128349 CTGCCACGCGGTAGTATTTATT 58.872 45.455 12.47 0.00 40.01 1.40
312 1738 2.547218 CCTGCCACGCGGTAGTATTTAT 60.547 50.000 12.47 0.00 43.18 1.40
313 1739 1.202440 CCTGCCACGCGGTAGTATTTA 60.202 52.381 12.47 0.00 43.18 1.40
314 1740 0.461339 CCTGCCACGCGGTAGTATTT 60.461 55.000 12.47 0.00 43.18 1.40
315 1741 1.143183 CCTGCCACGCGGTAGTATT 59.857 57.895 12.47 0.00 43.18 1.89
316 1742 2.812499 CCTGCCACGCGGTAGTAT 59.188 61.111 12.47 0.00 43.18 2.12
317 1743 4.137872 GCCTGCCACGCGGTAGTA 62.138 66.667 12.47 0.00 43.18 1.82
329 1755 3.044059 GATTGCTCACCACGCCTGC 62.044 63.158 0.00 0.00 0.00 4.85
330 1756 0.957395 AAGATTGCTCACCACGCCTG 60.957 55.000 0.00 0.00 0.00 4.85
331 1757 0.674895 GAAGATTGCTCACCACGCCT 60.675 55.000 0.00 0.00 0.00 5.52
332 1758 1.796796 GAAGATTGCTCACCACGCC 59.203 57.895 0.00 0.00 0.00 5.68
333 1759 1.014044 TCGAAGATTGCTCACCACGC 61.014 55.000 0.00 0.00 0.00 5.34
334 1760 1.428448 TTCGAAGATTGCTCACCACG 58.572 50.000 0.00 0.00 35.04 4.94
335 1761 3.002791 TGATTCGAAGATTGCTCACCAC 58.997 45.455 3.35 0.00 35.04 4.16
336 1762 3.333029 TGATTCGAAGATTGCTCACCA 57.667 42.857 3.35 0.00 35.04 4.17
337 1763 4.333649 TGAATGATTCGAAGATTGCTCACC 59.666 41.667 3.35 0.00 35.04 4.02
338 1764 5.475273 TGAATGATTCGAAGATTGCTCAC 57.525 39.130 3.35 0.00 35.04 3.51
339 1765 6.499234 TTTGAATGATTCGAAGATTGCTCA 57.501 33.333 3.35 1.31 35.04 4.26
340 1766 7.801547 TTTTTGAATGATTCGAAGATTGCTC 57.198 32.000 3.35 0.00 34.67 4.26
403 1830 8.220755 AGTTTGATCTGTAGCAAAGTTTTACA 57.779 30.769 0.00 1.29 40.80 2.41
423 1850 6.325919 TCATGTAGGGCTTGTTTTAGTTTG 57.674 37.500 0.00 0.00 0.00 2.93
442 1869 6.713903 AGATAACCTCTGGTTGCATATTCATG 59.286 38.462 11.78 0.00 46.35 3.07
457 1884 6.070538 ACACAGTTCATTAGCAGATAACCTCT 60.071 38.462 0.00 0.00 33.14 3.69
459 1886 6.054860 ACACAGTTCATTAGCAGATAACCT 57.945 37.500 0.00 0.00 0.00 3.50
495 1922 9.825972 CACTTGGTGTGTTATGTTAGAAATTAG 57.174 33.333 0.00 0.00 41.53 1.73
516 1943 5.521010 TCGTACTAGAACAAAACCACACTTG 59.479 40.000 0.00 0.00 0.00 3.16
540 1967 4.640789 TGGTTTTGCGAACAATAACTGT 57.359 36.364 5.32 0.00 41.27 3.55
563 1990 4.487948 CAACGCCAACATTCATCTTTGAT 58.512 39.130 0.00 0.00 0.00 2.57
564 1991 3.856638 GCAACGCCAACATTCATCTTTGA 60.857 43.478 0.00 0.00 0.00 2.69
565 1992 2.409378 GCAACGCCAACATTCATCTTTG 59.591 45.455 0.00 0.00 0.00 2.77
624 2051 5.591472 TCTGGGATCACAATCAGCAAAATAG 59.409 40.000 0.00 0.00 33.21 1.73
626 2053 4.346730 TCTGGGATCACAATCAGCAAAAT 58.653 39.130 0.00 0.00 33.21 1.82
652 2080 6.585702 CGTGAGATAGGCAGATTTCTGATAAG 59.414 42.308 11.70 0.00 46.59 1.73
779 2215 1.082117 CATGCGTTACAGGGACGTCC 61.082 60.000 27.04 27.04 42.22 4.79
780 2216 1.693083 GCATGCGTTACAGGGACGTC 61.693 60.000 7.13 7.13 42.22 4.34
781 2217 1.740296 GCATGCGTTACAGGGACGT 60.740 57.895 0.00 0.00 42.22 4.34
782 2218 1.089481 ATGCATGCGTTACAGGGACG 61.089 55.000 14.09 0.00 43.04 4.79
783 2219 0.378257 CATGCATGCGTTACAGGGAC 59.622 55.000 14.93 0.00 31.46 4.46
784 2220 0.747644 CCATGCATGCGTTACAGGGA 60.748 55.000 21.69 0.00 37.44 4.20
785 2221 1.031571 ACCATGCATGCGTTACAGGG 61.032 55.000 21.69 10.65 40.96 4.45
786 2222 0.378257 GACCATGCATGCGTTACAGG 59.622 55.000 21.69 11.04 0.00 4.00
787 2223 1.063027 CTGACCATGCATGCGTTACAG 59.937 52.381 21.69 17.89 0.00 2.74
788 2224 1.085893 CTGACCATGCATGCGTTACA 58.914 50.000 21.69 13.39 0.00 2.41
789 2225 1.328680 CTCTGACCATGCATGCGTTAC 59.671 52.381 21.69 9.88 0.00 2.50
790 2226 1.655484 CTCTGACCATGCATGCGTTA 58.345 50.000 21.69 15.11 0.00 3.18
791 2227 1.651240 GCTCTGACCATGCATGCGTT 61.651 55.000 21.69 7.28 0.00 4.84
792 2228 2.110967 GCTCTGACCATGCATGCGT 61.111 57.895 21.69 19.22 0.00 5.24
793 2229 2.048312 CTGCTCTGACCATGCATGCG 62.048 60.000 21.69 16.19 36.07 4.73
794 2230 1.728069 CTGCTCTGACCATGCATGC 59.272 57.895 21.69 11.82 36.07 4.06
795 2231 1.725557 GGCTGCTCTGACCATGCATG 61.726 60.000 20.19 20.19 36.07 4.06
851 2287 2.219164 GGTTACGGTGGTGGGGAGT 61.219 63.158 0.00 0.00 0.00 3.85
852 2288 2.666812 GGTTACGGTGGTGGGGAG 59.333 66.667 0.00 0.00 0.00 4.30
853 2289 2.929477 GGGTTACGGTGGTGGGGA 60.929 66.667 0.00 0.00 0.00 4.81
854 2290 2.473891 GAAGGGTTACGGTGGTGGGG 62.474 65.000 0.00 0.00 0.00 4.96
855 2291 1.002990 GAAGGGTTACGGTGGTGGG 60.003 63.158 0.00 0.00 0.00 4.61
856 2292 0.604511 GTGAAGGGTTACGGTGGTGG 60.605 60.000 0.00 0.00 0.00 4.61
857 2293 0.107081 TGTGAAGGGTTACGGTGGTG 59.893 55.000 0.00 0.00 0.00 4.17
858 2294 0.395312 CTGTGAAGGGTTACGGTGGT 59.605 55.000 0.00 0.00 0.00 4.16
859 2295 0.953960 GCTGTGAAGGGTTACGGTGG 60.954 60.000 0.00 0.00 0.00 4.61
860 2296 0.953960 GGCTGTGAAGGGTTACGGTG 60.954 60.000 0.00 0.00 0.00 4.94
861 2297 1.125711 AGGCTGTGAAGGGTTACGGT 61.126 55.000 0.00 0.00 0.00 4.83
862 2298 0.673644 CAGGCTGTGAAGGGTTACGG 60.674 60.000 6.28 0.00 0.00 4.02
863 2299 0.034896 ACAGGCTGTGAAGGGTTACG 59.965 55.000 21.37 0.00 0.00 3.18
864 2300 2.038033 TGTACAGGCTGTGAAGGGTTAC 59.962 50.000 29.65 16.99 0.00 2.50
865 2301 2.301870 CTGTACAGGCTGTGAAGGGTTA 59.698 50.000 29.65 4.23 0.00 2.85
866 2302 1.072331 CTGTACAGGCTGTGAAGGGTT 59.928 52.381 29.65 2.60 0.00 4.11
867 2303 0.687354 CTGTACAGGCTGTGAAGGGT 59.313 55.000 29.65 3.40 0.00 4.34
868 2304 0.674895 GCTGTACAGGCTGTGAAGGG 60.675 60.000 29.65 15.10 0.00 3.95
869 2305 2.846371 GCTGTACAGGCTGTGAAGG 58.154 57.895 29.65 16.72 0.00 3.46
878 2314 1.668101 GAGAGGACGGGCTGTACAGG 61.668 65.000 23.95 10.27 31.81 4.00
879 2315 1.668101 GGAGAGGACGGGCTGTACAG 61.668 65.000 18.93 18.93 31.81 2.74
880 2316 1.681327 GGAGAGGACGGGCTGTACA 60.681 63.158 12.12 0.00 31.81 2.90
881 2317 1.681327 TGGAGAGGACGGGCTGTAC 60.681 63.158 0.00 0.00 0.00 2.90
882 2318 1.681327 GTGGAGAGGACGGGCTGTA 60.681 63.158 0.00 0.00 0.00 2.74
883 2319 2.997897 GTGGAGAGGACGGGCTGT 60.998 66.667 0.00 0.00 0.00 4.40
884 2320 2.997315 TGTGGAGAGGACGGGCTG 60.997 66.667 0.00 0.00 0.00 4.85
885 2321 2.151307 TACTGTGGAGAGGACGGGCT 62.151 60.000 0.00 0.00 0.00 5.19
912 2348 2.116238 GGTGGGGAGTGAGCAGTTATA 58.884 52.381 0.00 0.00 0.00 0.98
966 2403 2.191641 GAAGGGCAGCTAGCTGGG 59.808 66.667 38.52 20.50 43.77 4.45
967 2404 2.191641 GGAAGGGCAGCTAGCTGG 59.808 66.667 38.52 23.73 43.77 4.85
1028 2472 0.734889 GGAGCGATGTGAATTGTGGG 59.265 55.000 0.00 0.00 0.00 4.61
1066 2510 2.158769 TGCTTGCTGTTTCTCTTCTCCA 60.159 45.455 0.00 0.00 0.00 3.86
1078 2522 2.993264 GGCCATGGTGCTTGCTGT 60.993 61.111 14.67 0.00 0.00 4.40
1087 2531 1.213926 GAAGGAGATCTTGGCCATGGT 59.786 52.381 17.95 11.69 35.50 3.55
1167 2611 0.537188 GGATGAAGGTGAGAGGCGAA 59.463 55.000 0.00 0.00 0.00 4.70
1177 2621 1.684248 GCATGGCTGAAGGATGAAGGT 60.684 52.381 0.00 0.00 0.00 3.50
1211 2661 0.318762 AGAAGAGCACCGGTGAGTTC 59.681 55.000 38.30 30.38 0.00 3.01
1226 2676 2.417719 CACGACCCAAAGGAGAAGAAG 58.582 52.381 0.00 0.00 36.73 2.85
1227 2677 1.542547 GCACGACCCAAAGGAGAAGAA 60.543 52.381 0.00 0.00 36.73 2.52
1228 2678 0.034896 GCACGACCCAAAGGAGAAGA 59.965 55.000 0.00 0.00 36.73 2.87
1255 2705 2.971598 CGCCACCTCCCATCACCTT 61.972 63.158 0.00 0.00 0.00 3.50
1321 2792 2.099062 CGCGGCAAATGCAGAGAC 59.901 61.111 9.74 0.00 44.36 3.36
1323 2794 3.332493 AAGCGCGGCAAATGCAGAG 62.332 57.895 8.83 7.29 44.36 3.35
1324 2795 3.326889 GAAGCGCGGCAAATGCAGA 62.327 57.895 8.83 0.00 44.36 4.26
1327 2798 4.759096 ACGAAGCGCGGCAAATGC 62.759 61.111 8.83 0.00 46.49 3.56
1339 2814 4.531659 AAAAAGACCAAACGAGACGAAG 57.468 40.909 0.00 0.00 0.00 3.79
1362 2837 8.471457 CGACACAAAAACATCATCAGTTAAAAG 58.529 33.333 0.00 0.00 0.00 2.27
1367 2842 4.338118 ACCGACACAAAAACATCATCAGTT 59.662 37.500 0.00 0.00 0.00 3.16
1368 2843 3.882888 ACCGACACAAAAACATCATCAGT 59.117 39.130 0.00 0.00 0.00 3.41
1369 2844 4.214119 AGACCGACACAAAAACATCATCAG 59.786 41.667 0.00 0.00 0.00 2.90
1371 2846 4.024048 ACAGACCGACACAAAAACATCATC 60.024 41.667 0.00 0.00 0.00 2.92
1382 2866 1.363807 CTCTGCACAGACCGACACA 59.636 57.895 0.00 0.00 33.22 3.72
1384 2868 1.363807 CACTCTGCACAGACCGACA 59.636 57.895 0.00 0.00 33.22 4.35
1386 2870 2.340078 GCACTCTGCACAGACCGA 59.660 61.111 0.00 0.00 44.26 4.69
1404 2891 2.805353 CGACGAGCACTTGGACGG 60.805 66.667 0.00 0.00 0.00 4.79
1627 3143 3.131396 GGCCGAGTAGTGAATAACCATG 58.869 50.000 0.00 0.00 0.00 3.66
1641 3157 2.501723 AGTAACATCTTGATGGCCGAGT 59.498 45.455 14.18 0.00 0.00 4.18
1680 3204 2.093890 TCACATGCCACTAAATGCCTG 58.906 47.619 0.00 0.00 0.00 4.85
1709 3237 6.650120 ACTGATAGAAACACGGATAATTGGT 58.350 36.000 0.00 0.00 0.00 3.67
1713 3241 7.506261 AGTCCTACTGATAGAAACACGGATAAT 59.494 37.037 0.00 0.00 0.00 1.28
1717 3245 4.597004 AGTCCTACTGATAGAAACACGGA 58.403 43.478 0.00 0.00 0.00 4.69
1719 3247 7.317842 TCTTAGTCCTACTGATAGAAACACG 57.682 40.000 0.00 0.00 0.00 4.49
1733 3261 7.265599 TCCATTTTTCCACATCTTAGTCCTA 57.734 36.000 0.00 0.00 0.00 2.94
1734 3262 6.139679 TCCATTTTTCCACATCTTAGTCCT 57.860 37.500 0.00 0.00 0.00 3.85
1735 3263 5.358160 CCTCCATTTTTCCACATCTTAGTCC 59.642 44.000 0.00 0.00 0.00 3.85
1736 3264 5.163612 GCCTCCATTTTTCCACATCTTAGTC 60.164 44.000 0.00 0.00 0.00 2.59
1737 3265 4.706962 GCCTCCATTTTTCCACATCTTAGT 59.293 41.667 0.00 0.00 0.00 2.24
1738 3266 4.201950 CGCCTCCATTTTTCCACATCTTAG 60.202 45.833 0.00 0.00 0.00 2.18
1787 3323 4.670221 GCACAAGGAACAATAAAGCTCGAG 60.670 45.833 8.45 8.45 0.00 4.04
1977 3523 0.322546 GGTCGTTTTGGATGGCCTCT 60.323 55.000 3.32 0.00 36.05 3.69
1991 3537 1.006571 CACTGCGGTAAGTGGTCGT 60.007 57.895 0.00 0.00 43.22 4.34
1997 3543 2.750712 ACAAACAAACACTGCGGTAAGT 59.249 40.909 0.00 0.00 0.00 2.24
1998 3544 3.414549 ACAAACAAACACTGCGGTAAG 57.585 42.857 0.00 0.00 0.00 2.34
1999 3545 3.851976 AACAAACAAACACTGCGGTAA 57.148 38.095 0.00 0.00 0.00 2.85
2000 3546 4.261238 CCATAACAAACAAACACTGCGGTA 60.261 41.667 0.00 0.00 0.00 4.02
2001 3547 3.490078 CCATAACAAACAAACACTGCGGT 60.490 43.478 0.00 0.00 0.00 5.68
2002 3548 3.049206 CCATAACAAACAAACACTGCGG 58.951 45.455 0.00 0.00 0.00 5.69
2003 3549 3.049206 CCCATAACAAACAAACACTGCG 58.951 45.455 0.00 0.00 0.00 5.18
2004 3550 4.037446 TCTCCCATAACAAACAAACACTGC 59.963 41.667 0.00 0.00 0.00 4.40
2005 3551 5.766150 TCTCCCATAACAAACAAACACTG 57.234 39.130 0.00 0.00 0.00 3.66
2006 3552 5.221244 GCTTCTCCCATAACAAACAAACACT 60.221 40.000 0.00 0.00 0.00 3.55
2007 3553 4.982295 GCTTCTCCCATAACAAACAAACAC 59.018 41.667 0.00 0.00 0.00 3.32
2008 3554 4.646945 TGCTTCTCCCATAACAAACAAACA 59.353 37.500 0.00 0.00 0.00 2.83
2009 3555 5.195001 TGCTTCTCCCATAACAAACAAAC 57.805 39.130 0.00 0.00 0.00 2.93
2010 3556 5.860941 TTGCTTCTCCCATAACAAACAAA 57.139 34.783 0.00 0.00 0.00 2.83
2011 3557 5.860941 TTTGCTTCTCCCATAACAAACAA 57.139 34.783 0.00 0.00 0.00 2.83
2012 3558 6.418057 AATTTGCTTCTCCCATAACAAACA 57.582 33.333 0.00 0.00 30.60 2.83
2013 3559 9.435688 AATAAATTTGCTTCTCCCATAACAAAC 57.564 29.630 0.00 0.00 30.60 2.93
2030 3576 6.916932 CACCCAAACAGGCAAAAATAAATTTG 59.083 34.615 0.00 0.00 42.01 2.32
2031 3577 6.830838 TCACCCAAACAGGCAAAAATAAATTT 59.169 30.769 0.00 0.00 35.39 1.82
2032 3578 6.360618 TCACCCAAACAGGCAAAAATAAATT 58.639 32.000 0.00 0.00 35.39 1.82
2033 3579 5.934781 TCACCCAAACAGGCAAAAATAAAT 58.065 33.333 0.00 0.00 35.39 1.40
2034 3580 5.359194 TCACCCAAACAGGCAAAAATAAA 57.641 34.783 0.00 0.00 35.39 1.40
2035 3581 5.559148 ATCACCCAAACAGGCAAAAATAA 57.441 34.783 0.00 0.00 35.39 1.40
2036 3582 5.559148 AATCACCCAAACAGGCAAAAATA 57.441 34.783 0.00 0.00 35.39 1.40
2037 3583 4.436113 AATCACCCAAACAGGCAAAAAT 57.564 36.364 0.00 0.00 35.39 1.82
2038 3584 3.922171 AATCACCCAAACAGGCAAAAA 57.078 38.095 0.00 0.00 35.39 1.94
2039 3585 5.359194 TTTAATCACCCAAACAGGCAAAA 57.641 34.783 0.00 0.00 35.39 2.44
2040 3586 5.559148 ATTTAATCACCCAAACAGGCAAA 57.441 34.783 0.00 0.00 35.39 3.68
2041 3587 5.303971 CAATTTAATCACCCAAACAGGCAA 58.696 37.500 0.00 0.00 35.39 4.52
2042 3588 4.262808 CCAATTTAATCACCCAAACAGGCA 60.263 41.667 0.00 0.00 35.39 4.75
2043 3589 4.020662 TCCAATTTAATCACCCAAACAGGC 60.021 41.667 0.00 0.00 35.39 4.85
2044 3590 5.337491 CCTCCAATTTAATCACCCAAACAGG 60.337 44.000 0.00 0.00 37.03 4.00
2045 3591 5.337491 CCCTCCAATTTAATCACCCAAACAG 60.337 44.000 0.00 0.00 0.00 3.16
2046 3592 4.530161 CCCTCCAATTTAATCACCCAAACA 59.470 41.667 0.00 0.00 0.00 2.83
2047 3593 4.622933 GCCCTCCAATTTAATCACCCAAAC 60.623 45.833 0.00 0.00 0.00 2.93
2048 3594 3.517500 GCCCTCCAATTTAATCACCCAAA 59.482 43.478 0.00 0.00 0.00 3.28
2049 3595 3.103742 GCCCTCCAATTTAATCACCCAA 58.896 45.455 0.00 0.00 0.00 4.12
2050 3596 2.314549 AGCCCTCCAATTTAATCACCCA 59.685 45.455 0.00 0.00 0.00 4.51
2051 3597 2.695147 CAGCCCTCCAATTTAATCACCC 59.305 50.000 0.00 0.00 0.00 4.61
2052 3598 2.101415 GCAGCCCTCCAATTTAATCACC 59.899 50.000 0.00 0.00 0.00 4.02
2053 3599 2.760092 TGCAGCCCTCCAATTTAATCAC 59.240 45.455 0.00 0.00 0.00 3.06
2054 3600 2.760092 GTGCAGCCCTCCAATTTAATCA 59.240 45.455 0.00 0.00 0.00 2.57
2055 3601 2.223572 CGTGCAGCCCTCCAATTTAATC 60.224 50.000 0.00 0.00 0.00 1.75
2056 3602 1.750778 CGTGCAGCCCTCCAATTTAAT 59.249 47.619 0.00 0.00 0.00 1.40
2057 3603 1.173043 CGTGCAGCCCTCCAATTTAA 58.827 50.000 0.00 0.00 0.00 1.52
2058 3604 1.312371 GCGTGCAGCCCTCCAATTTA 61.312 55.000 0.00 0.00 40.81 1.40
2059 3605 2.639327 GCGTGCAGCCCTCCAATTT 61.639 57.895 0.00 0.00 40.81 1.82
2060 3606 3.064324 GCGTGCAGCCCTCCAATT 61.064 61.111 0.00 0.00 40.81 2.32
2070 3616 4.275689 TCCATAATCCAATTAAGCGTGCAG 59.724 41.667 0.00 0.00 0.00 4.41
2071 3617 4.203226 TCCATAATCCAATTAAGCGTGCA 58.797 39.130 0.00 0.00 0.00 4.57
2072 3618 4.829064 TCCATAATCCAATTAAGCGTGC 57.171 40.909 0.00 0.00 0.00 5.34
2085 3631 3.997021 GTGACATGGTCGGATCCATAATC 59.003 47.826 13.41 11.19 45.23 1.75
2086 3632 3.390967 TGTGACATGGTCGGATCCATAAT 59.609 43.478 13.41 0.00 45.23 1.28
2087 3633 2.769095 TGTGACATGGTCGGATCCATAA 59.231 45.455 13.41 0.00 45.23 1.90
2088 3634 2.393646 TGTGACATGGTCGGATCCATA 58.606 47.619 13.41 0.00 45.23 2.74
2093 3639 3.319405 GTCTAGATGTGACATGGTCGGAT 59.681 47.826 1.23 0.00 34.95 4.18
2147 3693 2.622977 GGGGGCCACAAAACAGATGATA 60.623 50.000 7.65 0.00 0.00 2.15
2300 3887 1.659335 CCAAGCACACAAGCAAGCG 60.659 57.895 0.00 0.00 36.85 4.68
2322 3909 1.468565 CGTACGTGCAAAGCTAGCCTA 60.469 52.381 12.13 0.00 0.00 3.93
2347 3934 9.020731 TCCAGAAAAATATTCAAAGTTCCCTAC 57.979 33.333 0.00 0.00 0.00 3.18
2348 3935 9.594936 TTCCAGAAAAATATTCAAAGTTCCCTA 57.405 29.630 0.00 0.00 0.00 3.53
2408 4001 7.331934 TGTTCGAAAAATGTTCACAATTTCCAA 59.668 29.630 0.00 6.71 34.77 3.53
2721 6778 3.196469 TCCAAGTTGCAAATCCACAACAA 59.804 39.130 0.00 0.00 46.79 2.83
2722 6779 2.762887 TCCAAGTTGCAAATCCACAACA 59.237 40.909 0.00 0.00 46.79 3.33
2803 6860 3.066380 TGACTCACAATTGGTCACGATG 58.934 45.455 10.83 0.00 35.44 3.84
2807 6864 3.476552 TCCTTGACTCACAATTGGTCAC 58.523 45.455 13.51 1.52 39.30 3.67
2859 6918 2.034066 ACATGCAACGGGACCCTG 59.966 61.111 9.41 1.67 0.00 4.45
2896 6955 4.568152 CTAGGTCCGGCCATTTTTAATG 57.432 45.455 15.92 0.00 40.61 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.