Multiple sequence alignment - TraesCS7D01G210300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G210300 chr7D 100.000 2542 0 0 1 2542 168253627 168251086 0.000000e+00 4695.0
1 TraesCS7D01G210300 chr7A 92.280 842 48 7 732 1565 170585990 170585158 0.000000e+00 1179.0
2 TraesCS7D01G210300 chr7A 86.339 366 42 6 1857 2220 170567174 170566815 2.370000e-105 392.0
3 TraesCS7D01G210300 chr7A 84.314 255 22 6 3 239 170587219 170586965 1.520000e-57 233.0
4 TraesCS7D01G210300 chr7A 89.655 174 11 1 1586 1759 170585112 170584946 5.510000e-52 215.0
5 TraesCS7D01G210300 chr7A 94.118 136 3 1 282 412 170586963 170586828 4.290000e-48 202.0
6 TraesCS7D01G210300 chr7A 92.029 138 8 1 535 669 170586520 170586383 9.280000e-45 191.0
7 TraesCS7D01G210300 chr7B 95.010 501 19 4 1309 1808 133422477 133421982 0.000000e+00 782.0
8 TraesCS7D01G210300 chr7B 92.784 485 21 9 782 1265 133422965 133422494 0.000000e+00 689.0
9 TraesCS7D01G210300 chr7B 87.297 370 35 9 1857 2220 133421986 133421623 1.820000e-111 412.0
10 TraesCS7D01G210300 chr7B 93.651 252 10 4 463 708 133423773 133423522 3.090000e-99 372.0
11 TraesCS7D01G210300 chr7B 79.371 286 16 7 117 387 133435934 133435677 7.280000e-36 161.0
12 TraesCS7D01G210300 chr7B 98.148 54 1 0 379 432 133423914 133423861 7.490000e-16 95.3
13 TraesCS7D01G210300 chr7B 94.231 52 3 0 732 783 133423415 133423364 2.100000e-11 80.5
14 TraesCS7D01G210300 chr6A 84.444 270 32 8 2277 2541 383476157 383475893 9.020000e-65 257.0
15 TraesCS7D01G210300 chr6A 84.681 235 23 11 2303 2536 615138381 615138603 3.290000e-54 222.0
16 TraesCS7D01G210300 chr6B 83.929 280 29 13 2269 2541 417237336 417237066 1.170000e-63 254.0
17 TraesCS7D01G210300 chr3A 82.201 309 36 10 2243 2542 474506065 474506363 5.430000e-62 248.0
18 TraesCS7D01G210300 chr3A 87.619 210 25 1 2333 2542 478955961 478956169 2.530000e-60 243.0
19 TraesCS7D01G210300 chr3A 97.619 42 1 0 1815 1856 691630788 691630829 3.510000e-09 73.1
20 TraesCS7D01G210300 chr5D 82.392 301 33 15 2253 2541 364735839 364736131 7.020000e-61 244.0
21 TraesCS7D01G210300 chr4A 80.921 304 43 8 2246 2542 720377918 720377623 2.540000e-55 226.0
22 TraesCS7D01G210300 chr4B 80.859 256 31 16 2296 2539 178376784 178377033 4.320000e-43 185.0
23 TraesCS7D01G210300 chrUn 81.735 219 36 2 2318 2536 49987804 49987590 2.010000e-41 180.0
24 TraesCS7D01G210300 chr3D 90.667 75 7 0 1388 1462 286894112 286894038 1.610000e-17 100.0
25 TraesCS7D01G210300 chr1B 95.556 45 2 0 1815 1859 12396395 12396439 3.510000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G210300 chr7D 168251086 168253627 2541 True 4695.000000 4695 100.000000 1 2542 1 chr7D.!!$R1 2541
1 TraesCS7D01G210300 chr7A 170584946 170587219 2273 True 404.000000 1179 90.479200 3 1759 5 chr7A.!!$R2 1756
2 TraesCS7D01G210300 chr7B 133421623 133423914 2291 True 405.133333 782 93.520167 379 2220 6 chr7B.!!$R2 1841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 278 0.108329 CGCCGTATCACTCCCAGTTT 60.108 55.0 0.0 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2090 3082 0.09473 GATATCCCGCGCGTTAATGC 59.905 55.0 29.95 9.74 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 8.689251 AATCGGTATGATATAAATGAGACACG 57.311 34.615 0.00 0.00 35.84 4.49
55 57 8.235226 CGGTATGATATAAATGAGACACGTACT 58.765 37.037 0.00 0.00 0.00 2.73
62 64 9.929180 ATATAAATGAGACACGTACTATGCATT 57.071 29.630 3.54 0.00 0.00 3.56
68 70 9.929180 ATGAGACACGTACTATGCATTATTTAT 57.071 29.630 3.54 0.00 0.00 1.40
69 71 9.406828 TGAGACACGTACTATGCATTATTTATC 57.593 33.333 3.54 0.00 0.00 1.75
86 88 2.723124 ATCACCACCGAAAAATGTGC 57.277 45.000 0.00 0.00 0.00 4.57
89 91 1.025812 ACCACCGAAAAATGTGCGAA 58.974 45.000 0.00 0.00 0.00 4.70
93 95 2.656422 CACCGAAAAATGTGCGAATGAC 59.344 45.455 0.00 0.00 0.00 3.06
148 150 3.318539 CTGCCATGCTGCGTGTCAC 62.319 63.158 19.58 9.85 0.00 3.67
152 154 2.030412 ATGCTGCGTGTCACCGAA 59.970 55.556 0.00 0.00 0.00 4.30
187 206 1.871408 CGCCAGCTAGAATCGCTTCAT 60.871 52.381 1.35 0.00 35.07 2.57
233 252 0.179084 GCATAGGACGCTGCACCTAA 60.179 55.000 20.67 9.30 41.27 2.69
235 254 0.464452 ATAGGACGCTGCACCTAACC 59.536 55.000 20.67 6.27 41.27 2.85
239 258 1.352156 GACGCTGCACCTAACCTTCG 61.352 60.000 0.00 0.00 0.00 3.79
240 259 2.740714 CGCTGCACCTAACCTTCGC 61.741 63.158 0.00 0.00 0.00 4.70
241 260 2.740714 GCTGCACCTAACCTTCGCG 61.741 63.158 0.00 0.00 0.00 5.87
242 261 2.740714 CTGCACCTAACCTTCGCGC 61.741 63.158 0.00 0.00 0.00 6.86
243 262 3.497031 GCACCTAACCTTCGCGCC 61.497 66.667 0.00 0.00 0.00 6.53
244 263 3.186047 CACCTAACCTTCGCGCCG 61.186 66.667 0.00 0.00 0.00 6.46
245 264 3.688159 ACCTAACCTTCGCGCCGT 61.688 61.111 0.00 0.00 0.00 5.68
246 265 2.342650 ACCTAACCTTCGCGCCGTA 61.343 57.895 0.00 0.00 0.00 4.02
247 266 1.066918 CCTAACCTTCGCGCCGTAT 59.933 57.895 0.00 0.00 0.00 3.06
248 267 0.938168 CCTAACCTTCGCGCCGTATC 60.938 60.000 0.00 0.00 0.00 2.24
249 268 0.248743 CTAACCTTCGCGCCGTATCA 60.249 55.000 0.00 0.00 0.00 2.15
250 269 0.526096 TAACCTTCGCGCCGTATCAC 60.526 55.000 0.00 0.00 0.00 3.06
251 270 2.104331 CCTTCGCGCCGTATCACT 59.896 61.111 0.00 0.00 0.00 3.41
252 271 1.944676 CCTTCGCGCCGTATCACTC 60.945 63.158 0.00 0.00 0.00 3.51
253 272 1.944676 CTTCGCGCCGTATCACTCC 60.945 63.158 0.00 0.00 0.00 3.85
254 273 3.420214 TTCGCGCCGTATCACTCCC 62.420 63.158 0.00 0.00 0.00 4.30
255 274 4.201679 CGCGCCGTATCACTCCCA 62.202 66.667 0.00 0.00 0.00 4.37
256 275 2.279517 GCGCCGTATCACTCCCAG 60.280 66.667 0.00 0.00 0.00 4.45
257 276 3.077519 GCGCCGTATCACTCCCAGT 62.078 63.158 0.00 0.00 0.00 4.00
258 277 1.515954 CGCCGTATCACTCCCAGTT 59.484 57.895 0.00 0.00 0.00 3.16
259 278 0.108329 CGCCGTATCACTCCCAGTTT 60.108 55.000 0.00 0.00 0.00 2.66
260 279 1.674817 CGCCGTATCACTCCCAGTTTT 60.675 52.381 0.00 0.00 0.00 2.43
261 280 1.737793 GCCGTATCACTCCCAGTTTTG 59.262 52.381 0.00 0.00 0.00 2.44
262 281 2.614481 GCCGTATCACTCCCAGTTTTGA 60.614 50.000 0.00 0.00 0.00 2.69
263 282 3.262420 CCGTATCACTCCCAGTTTTGAG 58.738 50.000 0.00 0.00 34.73 3.02
264 283 3.056107 CCGTATCACTCCCAGTTTTGAGA 60.056 47.826 0.00 0.00 32.84 3.27
265 284 4.562757 CCGTATCACTCCCAGTTTTGAGAA 60.563 45.833 0.00 0.00 32.84 2.87
266 285 4.994852 CGTATCACTCCCAGTTTTGAGAAA 59.005 41.667 0.00 0.00 32.84 2.52
267 286 5.643777 CGTATCACTCCCAGTTTTGAGAAAT 59.356 40.000 0.00 0.00 32.84 2.17
268 287 6.149474 CGTATCACTCCCAGTTTTGAGAAATT 59.851 38.462 0.00 0.00 32.84 1.82
269 288 7.333423 CGTATCACTCCCAGTTTTGAGAAATTA 59.667 37.037 0.00 0.00 32.84 1.40
270 289 9.010029 GTATCACTCCCAGTTTTGAGAAATTAA 57.990 33.333 0.00 0.00 32.84 1.40
271 290 7.272037 TCACTCCCAGTTTTGAGAAATTAAC 57.728 36.000 0.00 0.00 32.84 2.01
272 291 6.831353 TCACTCCCAGTTTTGAGAAATTAACA 59.169 34.615 0.00 0.00 32.84 2.41
273 292 7.340743 TCACTCCCAGTTTTGAGAAATTAACAA 59.659 33.333 0.00 0.00 32.84 2.83
274 293 7.649306 CACTCCCAGTTTTGAGAAATTAACAAG 59.351 37.037 0.00 0.00 32.84 3.16
275 294 7.342026 ACTCCCAGTTTTGAGAAATTAACAAGT 59.658 33.333 0.00 0.00 32.84 3.16
276 295 7.488322 TCCCAGTTTTGAGAAATTAACAAGTG 58.512 34.615 0.00 0.00 0.00 3.16
277 296 7.123547 TCCCAGTTTTGAGAAATTAACAAGTGT 59.876 33.333 0.00 0.00 0.00 3.55
278 297 7.763985 CCCAGTTTTGAGAAATTAACAAGTGTT 59.236 33.333 1.75 1.75 41.73 3.32
279 298 8.594687 CCAGTTTTGAGAAATTAACAAGTGTTG 58.405 33.333 6.94 0.00 38.90 3.33
325 349 2.736144 TCGAAACGTGGAGTAGCATT 57.264 45.000 0.00 0.00 0.00 3.56
371 395 1.202200 GCGTGGAGTAGAGTAGTGCTG 60.202 57.143 0.00 0.00 0.00 4.41
395 419 2.125350 CTGCCTGGTCGCTTCTCC 60.125 66.667 0.00 0.00 0.00 3.71
459 505 4.095410 TCAAGCTAATGCCAATTTGACG 57.905 40.909 0.00 0.00 40.80 4.35
460 506 3.119531 TCAAGCTAATGCCAATTTGACGG 60.120 43.478 0.00 0.00 40.80 4.79
462 508 2.684881 AGCTAATGCCAATTTGACGGAG 59.315 45.455 0.00 0.00 40.80 4.63
463 509 2.223572 GCTAATGCCAATTTGACGGAGG 60.224 50.000 0.00 0.00 0.00 4.30
465 511 2.214376 ATGCCAATTTGACGGAGGAA 57.786 45.000 0.00 0.00 0.00 3.36
466 512 2.214376 TGCCAATTTGACGGAGGAAT 57.786 45.000 0.00 0.00 0.00 3.01
467 513 2.091541 TGCCAATTTGACGGAGGAATC 58.908 47.619 0.00 0.00 0.00 2.52
596 805 1.968017 ACGCATGCACTTGGACTGG 60.968 57.895 19.57 0.00 0.00 4.00
646 858 2.203294 AAACCCACCTCACGCCAC 60.203 61.111 0.00 0.00 0.00 5.01
669 881 0.179702 TAATGGAGCAGGAGCAGCAG 59.820 55.000 0.00 0.00 45.49 4.24
670 882 3.700831 ATGGAGCAGGAGCAGCAGC 62.701 63.158 0.00 0.00 45.49 5.25
682 1145 1.301716 CAGCAGCAACCGTGTACCT 60.302 57.895 0.00 0.00 0.00 3.08
745 1297 6.598753 TTTATTTACTTAGATGCGCTGACC 57.401 37.500 9.73 0.00 0.00 4.02
854 1806 1.300233 GCACTGATCGGATCCGGAC 60.300 63.158 32.79 25.05 40.25 4.79
861 1813 1.001597 GATCGGATCCGGACTGTACAC 60.002 57.143 32.79 10.57 40.25 2.90
961 1914 1.407434 CTGAAGCATCGATCGAGCTC 58.593 55.000 29.35 23.76 37.70 4.09
984 1941 4.911610 CGAGTTAGTTTTGGTGATTTGCAG 59.088 41.667 0.00 0.00 0.00 4.41
990 1947 0.675083 TTGGTGATTTGCAGTGCAGG 59.325 50.000 18.81 0.00 40.61 4.85
1020 1977 1.992277 GCTGGCTCAGGGAAGAGGA 60.992 63.158 4.65 0.00 36.15 3.71
1027 1984 0.541998 TCAGGGAAGAGGAAGTGCGA 60.542 55.000 0.00 0.00 0.00 5.10
1225 2182 1.258982 GTGAGTCGTTGCTGTTGTGAG 59.741 52.381 0.00 0.00 0.00 3.51
1256 2213 0.319728 GCTAGGCATGCAGCTAGCTA 59.680 55.000 32.06 18.68 45.94 3.32
1293 2250 3.370840 AGCCTTCTCCATTGTTGCATA 57.629 42.857 0.00 0.00 0.00 3.14
1294 2251 3.907221 AGCCTTCTCCATTGTTGCATAT 58.093 40.909 0.00 0.00 0.00 1.78
1304 2261 0.525311 TGTTGCATATGGGTTGCGTG 59.475 50.000 4.56 0.00 43.10 5.34
1576 2568 2.747989 GCCGCATCATCATCATCAATCT 59.252 45.455 0.00 0.00 0.00 2.40
1596 2588 8.308585 CAATCTTTTGAGGATTGCATGCTTGC 62.309 42.308 20.33 17.19 41.95 4.01
1613 2605 2.683859 GCCCTGGCCGTCGTTTAAC 61.684 63.158 0.00 0.00 34.56 2.01
1627 2619 1.944709 GTTTAACTGTCCGTGCCTTGT 59.055 47.619 0.00 0.00 0.00 3.16
1689 2681 6.584185 AATTGGGGTTGTCACTTGTATTAC 57.416 37.500 0.00 0.00 0.00 1.89
1822 2814 8.957466 TCTCAATATATACAACTAGATGGACGG 58.043 37.037 4.89 0.00 0.00 4.79
1823 2815 7.544622 TCAATATATACAACTAGATGGACGGC 58.455 38.462 4.89 0.00 0.00 5.68
1824 2816 7.396339 TCAATATATACAACTAGATGGACGGCT 59.604 37.037 4.89 0.00 0.00 5.52
1825 2817 5.646577 ATATACAACTAGATGGACGGCTC 57.353 43.478 4.89 0.00 0.00 4.70
1826 2818 0.456221 ACAACTAGATGGACGGCTCG 59.544 55.000 4.89 0.00 0.00 5.03
1827 2819 0.456221 CAACTAGATGGACGGCTCGT 59.544 55.000 0.00 0.00 45.10 4.18
1828 2820 1.674441 CAACTAGATGGACGGCTCGTA 59.326 52.381 0.00 0.00 41.37 3.43
1829 2821 2.048444 ACTAGATGGACGGCTCGTAA 57.952 50.000 0.00 0.00 41.37 3.18
1830 2822 2.372264 ACTAGATGGACGGCTCGTAAA 58.628 47.619 0.00 0.00 41.37 2.01
1831 2823 2.957006 ACTAGATGGACGGCTCGTAAAT 59.043 45.455 0.00 0.00 41.37 1.40
1832 2824 2.981859 AGATGGACGGCTCGTAAATT 57.018 45.000 0.09 0.00 41.37 1.82
1833 2825 2.822764 AGATGGACGGCTCGTAAATTC 58.177 47.619 0.09 0.00 41.37 2.17
1834 2826 1.521423 GATGGACGGCTCGTAAATTCG 59.479 52.381 0.09 0.00 41.37 3.34
1835 2827 1.079875 TGGACGGCTCGTAAATTCGC 61.080 55.000 0.09 0.00 41.37 4.70
1836 2828 1.634753 GACGGCTCGTAAATTCGCC 59.365 57.895 0.09 0.00 41.37 5.54
1837 2829 1.079681 ACGGCTCGTAAATTCGCCA 60.080 52.632 0.00 0.00 42.59 5.69
1838 2830 0.671163 ACGGCTCGTAAATTCGCCAA 60.671 50.000 0.00 0.00 42.59 4.52
1839 2831 0.655733 CGGCTCGTAAATTCGCCAAT 59.344 50.000 0.00 0.00 42.59 3.16
1840 2832 1.332904 CGGCTCGTAAATTCGCCAATC 60.333 52.381 0.00 0.00 42.59 2.67
1841 2833 1.668751 GGCTCGTAAATTCGCCAATCA 59.331 47.619 0.00 0.00 42.06 2.57
1842 2834 2.290641 GGCTCGTAAATTCGCCAATCAT 59.709 45.455 0.00 0.00 42.06 2.45
1843 2835 3.545633 GCTCGTAAATTCGCCAATCATC 58.454 45.455 0.00 0.00 0.00 2.92
1844 2836 3.787826 CTCGTAAATTCGCCAATCATCG 58.212 45.455 0.00 0.00 0.00 3.84
1845 2837 3.191669 TCGTAAATTCGCCAATCATCGT 58.808 40.909 0.00 0.00 0.00 3.73
1846 2838 4.361420 TCGTAAATTCGCCAATCATCGTA 58.639 39.130 0.00 0.00 0.00 3.43
1847 2839 4.804665 TCGTAAATTCGCCAATCATCGTAA 59.195 37.500 0.00 0.00 0.00 3.18
1848 2840 4.896238 CGTAAATTCGCCAATCATCGTAAC 59.104 41.667 0.00 0.00 0.00 2.50
1849 2841 4.955925 AAATTCGCCAATCATCGTAACA 57.044 36.364 0.00 0.00 0.00 2.41
1850 2842 4.536364 AATTCGCCAATCATCGTAACAG 57.464 40.909 0.00 0.00 0.00 3.16
1851 2843 2.665649 TCGCCAATCATCGTAACAGT 57.334 45.000 0.00 0.00 0.00 3.55
1852 2844 2.967362 TCGCCAATCATCGTAACAGTT 58.033 42.857 0.00 0.00 0.00 3.16
1853 2845 2.670905 TCGCCAATCATCGTAACAGTTG 59.329 45.455 0.00 0.00 0.00 3.16
1854 2846 2.415168 CGCCAATCATCGTAACAGTTGT 59.585 45.455 0.00 0.00 0.00 3.32
1855 2847 3.615056 CGCCAATCATCGTAACAGTTGTA 59.385 43.478 0.00 0.00 0.00 2.41
1856 2848 4.092237 CGCCAATCATCGTAACAGTTGTAA 59.908 41.667 0.00 0.00 0.00 2.41
1857 2849 5.220586 CGCCAATCATCGTAACAGTTGTAAT 60.221 40.000 0.00 0.00 0.00 1.89
1858 2850 6.019398 CGCCAATCATCGTAACAGTTGTAATA 60.019 38.462 0.00 0.00 0.00 0.98
1859 2851 7.123830 GCCAATCATCGTAACAGTTGTAATAC 58.876 38.462 0.00 0.00 0.00 1.89
1860 2852 7.201574 GCCAATCATCGTAACAGTTGTAATACA 60.202 37.037 0.00 0.00 0.00 2.29
1874 2866 5.638530 TGTAATACAACTATGCCATCCCA 57.361 39.130 0.00 0.00 0.00 4.37
1879 2871 3.091545 ACAACTATGCCATCCCAACTTG 58.908 45.455 0.00 0.00 0.00 3.16
1882 2874 0.254462 TATGCCATCCCAACTTGCGA 59.746 50.000 0.00 0.00 0.00 5.10
1929 2921 2.702898 TCAACGTGCAACCATTCATG 57.297 45.000 0.00 0.00 0.00 3.07
2066 3058 7.572502 AATTTTCGCAAACTCAAATCTCATC 57.427 32.000 0.00 0.00 0.00 2.92
2067 3059 5.687770 TTTCGCAAACTCAAATCTCATCA 57.312 34.783 0.00 0.00 0.00 3.07
2090 3082 7.479980 TCAAAATATATTGCAGAAAGTTCCCG 58.520 34.615 0.00 0.00 0.00 5.14
2094 3086 1.327303 TTGCAGAAAGTTCCCGCATT 58.673 45.000 6.59 0.00 36.42 3.56
2115 3107 0.452184 ACGCGCGGGATATCATCTAG 59.548 55.000 35.22 0.47 0.00 2.43
2119 3111 3.436496 GCGCGGGATATCATCTAGTTAC 58.564 50.000 8.83 0.00 0.00 2.50
2127 3119 7.595502 CGGGATATCATCTAGTTACTGTGAAAC 59.404 40.741 4.83 0.00 37.35 2.78
2186 3179 3.633065 TGGTATGGTTGATGTCATGCATG 59.367 43.478 21.07 21.07 38.06 4.06
2199 3197 4.263594 TGTCATGCATGATGCCATACCTAT 60.264 41.667 30.89 0.00 44.23 2.57
2213 3211 4.876107 CCATACCTATTTGCTCGTTGACTT 59.124 41.667 0.00 0.00 0.00 3.01
2214 3212 6.046593 CCATACCTATTTGCTCGTTGACTTA 58.953 40.000 0.00 0.00 0.00 2.24
2215 3213 6.201044 CCATACCTATTTGCTCGTTGACTTAG 59.799 42.308 0.00 0.00 0.00 2.18
2216 3214 5.401531 ACCTATTTGCTCGTTGACTTAGA 57.598 39.130 0.00 0.00 0.00 2.10
2217 3215 5.411781 ACCTATTTGCTCGTTGACTTAGAG 58.588 41.667 0.00 0.00 35.28 2.43
2222 3220 1.618861 CTCGTTGACTTAGAGCACCG 58.381 55.000 0.00 0.00 0.00 4.94
2223 3221 1.199327 CTCGTTGACTTAGAGCACCGA 59.801 52.381 0.00 0.00 0.00 4.69
2224 3222 1.610038 TCGTTGACTTAGAGCACCGAA 59.390 47.619 0.00 0.00 0.00 4.30
2225 3223 2.230508 TCGTTGACTTAGAGCACCGAAT 59.769 45.455 0.00 0.00 0.00 3.34
2226 3224 3.441222 TCGTTGACTTAGAGCACCGAATA 59.559 43.478 0.00 0.00 0.00 1.75
2227 3225 4.082625 TCGTTGACTTAGAGCACCGAATAA 60.083 41.667 0.00 0.00 0.00 1.40
2228 3226 4.624024 CGTTGACTTAGAGCACCGAATAAA 59.376 41.667 0.00 0.00 0.00 1.40
2229 3227 5.119588 CGTTGACTTAGAGCACCGAATAAAA 59.880 40.000 0.00 0.00 0.00 1.52
2230 3228 6.347079 CGTTGACTTAGAGCACCGAATAAAAA 60.347 38.462 0.00 0.00 0.00 1.94
2250 3248 5.921962 AAAAGGGATGATAGTTGGAAAGC 57.078 39.130 0.00 0.00 0.00 3.51
2251 3249 4.591321 AAGGGATGATAGTTGGAAAGCA 57.409 40.909 0.00 0.00 0.00 3.91
2252 3250 4.162040 AGGGATGATAGTTGGAAAGCAG 57.838 45.455 0.00 0.00 0.00 4.24
2253 3251 2.620585 GGGATGATAGTTGGAAAGCAGC 59.379 50.000 0.00 0.00 0.00 5.25
2254 3252 2.289002 GGATGATAGTTGGAAAGCAGCG 59.711 50.000 0.00 0.00 0.00 5.18
2255 3253 2.472695 TGATAGTTGGAAAGCAGCGT 57.527 45.000 0.00 0.00 0.00 5.07
2256 3254 2.778299 TGATAGTTGGAAAGCAGCGTT 58.222 42.857 0.00 0.00 0.00 4.84
2257 3255 3.146066 TGATAGTTGGAAAGCAGCGTTT 58.854 40.909 0.00 0.00 0.00 3.60
2258 3256 3.568007 TGATAGTTGGAAAGCAGCGTTTT 59.432 39.130 0.00 0.00 0.00 2.43
2259 3257 2.208326 AGTTGGAAAGCAGCGTTTTG 57.792 45.000 0.00 0.00 0.00 2.44
2260 3258 1.202405 AGTTGGAAAGCAGCGTTTTGG 60.202 47.619 0.00 0.00 0.00 3.28
2261 3259 0.529555 TTGGAAAGCAGCGTTTTGGC 60.530 50.000 0.00 0.00 0.00 4.52
2262 3260 1.363807 GGAAAGCAGCGTTTTGGCT 59.636 52.632 0.00 0.00 46.13 4.75
2263 3261 0.664466 GGAAAGCAGCGTTTTGGCTC 60.664 55.000 0.00 0.00 42.53 4.70
2264 3262 0.664466 GAAAGCAGCGTTTTGGCTCC 60.664 55.000 0.00 0.00 42.53 4.70
2265 3263 2.087462 AAAGCAGCGTTTTGGCTCCC 62.087 55.000 0.00 0.00 42.53 4.30
2266 3264 3.294493 GCAGCGTTTTGGCTCCCA 61.294 61.111 0.00 0.00 42.53 4.37
2267 3265 2.639327 GCAGCGTTTTGGCTCCCAT 61.639 57.895 0.00 0.00 42.53 4.00
2268 3266 1.312371 GCAGCGTTTTGGCTCCCATA 61.312 55.000 0.00 0.00 42.53 2.74
2269 3267 1.392589 CAGCGTTTTGGCTCCCATAT 58.607 50.000 0.00 0.00 42.53 1.78
2270 3268 1.066002 CAGCGTTTTGGCTCCCATATG 59.934 52.381 0.00 0.00 42.53 1.78
2271 3269 1.064758 AGCGTTTTGGCTCCCATATGA 60.065 47.619 3.65 0.00 39.61 2.15
2272 3270 1.334869 GCGTTTTGGCTCCCATATGAG 59.665 52.381 3.65 0.00 31.53 2.90
2278 3276 3.072476 CTCCCATATGAGCCCGGG 58.928 66.667 19.09 19.09 40.32 5.73
2279 3277 1.536418 CTCCCATATGAGCCCGGGA 60.536 63.158 29.31 2.74 45.66 5.14
2280 3278 1.536418 TCCCATATGAGCCCGGGAG 60.536 63.158 29.31 0.00 42.94 4.30
2281 3279 1.843376 CCCATATGAGCCCGGGAGT 60.843 63.158 29.31 10.93 41.62 3.85
2282 3280 1.372683 CCATATGAGCCCGGGAGTG 59.627 63.158 29.31 12.20 0.00 3.51
2283 3281 1.121407 CCATATGAGCCCGGGAGTGA 61.121 60.000 29.31 4.34 0.00 3.41
2284 3282 0.034059 CATATGAGCCCGGGAGTGAC 59.966 60.000 29.31 5.62 0.00 3.67
2285 3283 0.398522 ATATGAGCCCGGGAGTGACA 60.399 55.000 29.31 15.93 0.00 3.58
2286 3284 0.616395 TATGAGCCCGGGAGTGACAA 60.616 55.000 29.31 1.13 0.00 3.18
2287 3285 1.488705 ATGAGCCCGGGAGTGACAAA 61.489 55.000 29.31 0.00 0.00 2.83
2288 3286 1.072505 GAGCCCGGGAGTGACAAAA 59.927 57.895 29.31 0.00 0.00 2.44
2289 3287 0.536460 GAGCCCGGGAGTGACAAAAA 60.536 55.000 29.31 0.00 0.00 1.94
2347 3345 7.776933 TCGAATTCTATTGTGGAGAAAGATG 57.223 36.000 3.52 0.00 36.54 2.90
2348 3346 7.555965 TCGAATTCTATTGTGGAGAAAGATGA 58.444 34.615 3.52 0.00 36.54 2.92
2349 3347 8.206867 TCGAATTCTATTGTGGAGAAAGATGAT 58.793 33.333 3.52 0.00 36.54 2.45
2350 3348 8.834465 CGAATTCTATTGTGGAGAAAGATGATT 58.166 33.333 3.52 0.00 36.54 2.57
2351 3349 9.947669 GAATTCTATTGTGGAGAAAGATGATTG 57.052 33.333 0.00 0.00 36.54 2.67
2352 3350 9.690913 AATTCTATTGTGGAGAAAGATGATTGA 57.309 29.630 0.00 0.00 36.54 2.57
2353 3351 8.728337 TTCTATTGTGGAGAAAGATGATTGAG 57.272 34.615 0.00 0.00 29.97 3.02
2354 3352 7.855375 TCTATTGTGGAGAAAGATGATTGAGT 58.145 34.615 0.00 0.00 0.00 3.41
2355 3353 6.754702 ATTGTGGAGAAAGATGATTGAGTG 57.245 37.500 0.00 0.00 0.00 3.51
2356 3354 4.005650 TGTGGAGAAAGATGATTGAGTGC 58.994 43.478 0.00 0.00 0.00 4.40
2357 3355 3.063180 GTGGAGAAAGATGATTGAGTGCG 59.937 47.826 0.00 0.00 0.00 5.34
2358 3356 3.265791 GGAGAAAGATGATTGAGTGCGT 58.734 45.455 0.00 0.00 0.00 5.24
2359 3357 3.063180 GGAGAAAGATGATTGAGTGCGTG 59.937 47.826 0.00 0.00 0.00 5.34
2360 3358 3.928992 GAGAAAGATGATTGAGTGCGTGA 59.071 43.478 0.00 0.00 0.00 4.35
2361 3359 4.511527 AGAAAGATGATTGAGTGCGTGAT 58.488 39.130 0.00 0.00 0.00 3.06
2362 3360 4.331992 AGAAAGATGATTGAGTGCGTGATG 59.668 41.667 0.00 0.00 0.00 3.07
2363 3361 3.531934 AGATGATTGAGTGCGTGATGA 57.468 42.857 0.00 0.00 0.00 2.92
2364 3362 3.193263 AGATGATTGAGTGCGTGATGAC 58.807 45.455 0.00 0.00 0.00 3.06
2365 3363 1.725641 TGATTGAGTGCGTGATGACC 58.274 50.000 0.00 0.00 0.00 4.02
2366 3364 0.647410 GATTGAGTGCGTGATGACCG 59.353 55.000 0.00 0.00 0.00 4.79
2367 3365 0.037326 ATTGAGTGCGTGATGACCGT 60.037 50.000 0.00 0.00 0.00 4.83
2368 3366 0.943835 TTGAGTGCGTGATGACCGTG 60.944 55.000 0.00 0.00 0.00 4.94
2369 3367 2.730672 GAGTGCGTGATGACCGTGC 61.731 63.158 0.00 0.00 0.00 5.34
2370 3368 3.788766 GTGCGTGATGACCGTGCC 61.789 66.667 0.00 0.00 0.00 5.01
2371 3369 4.306967 TGCGTGATGACCGTGCCA 62.307 61.111 0.00 0.00 0.00 4.92
2372 3370 3.047280 GCGTGATGACCGTGCCAA 61.047 61.111 0.00 0.00 0.00 4.52
2373 3371 2.612567 GCGTGATGACCGTGCCAAA 61.613 57.895 0.00 0.00 0.00 3.28
2374 3372 1.922135 GCGTGATGACCGTGCCAAAT 61.922 55.000 0.00 0.00 0.00 2.32
2375 3373 0.521291 CGTGATGACCGTGCCAAATT 59.479 50.000 0.00 0.00 0.00 1.82
2376 3374 1.068610 CGTGATGACCGTGCCAAATTT 60.069 47.619 0.00 0.00 0.00 1.82
2377 3375 2.595386 GTGATGACCGTGCCAAATTTC 58.405 47.619 0.00 0.00 0.00 2.17
2378 3376 2.030363 GTGATGACCGTGCCAAATTTCA 60.030 45.455 0.00 0.00 0.00 2.69
2379 3377 2.228582 TGATGACCGTGCCAAATTTCAG 59.771 45.455 0.00 0.00 0.00 3.02
2380 3378 1.974265 TGACCGTGCCAAATTTCAGA 58.026 45.000 0.00 0.00 0.00 3.27
2381 3379 1.879380 TGACCGTGCCAAATTTCAGAG 59.121 47.619 0.00 0.00 0.00 3.35
2382 3380 0.598065 ACCGTGCCAAATTTCAGAGC 59.402 50.000 0.00 0.00 0.00 4.09
2383 3381 0.597568 CCGTGCCAAATTTCAGAGCA 59.402 50.000 0.00 0.00 0.00 4.26
2384 3382 1.203052 CCGTGCCAAATTTCAGAGCAT 59.797 47.619 5.35 0.00 35.62 3.79
2385 3383 2.353011 CCGTGCCAAATTTCAGAGCATT 60.353 45.455 5.35 0.00 35.62 3.56
2386 3384 3.319755 CGTGCCAAATTTCAGAGCATTT 58.680 40.909 5.35 0.00 35.62 2.32
2387 3385 3.122278 CGTGCCAAATTTCAGAGCATTTG 59.878 43.478 9.04 9.04 39.25 2.32
2394 3392 7.429636 CAAATTTCAGAGCATTTGGATGTTT 57.570 32.000 8.42 0.00 36.93 2.83
2395 3393 7.295201 CAAATTTCAGAGCATTTGGATGTTTG 58.705 34.615 8.42 0.00 36.93 2.93
2396 3394 5.787953 TTTCAGAGCATTTGGATGTTTGA 57.212 34.783 0.00 0.00 35.63 2.69
2397 3395 5.381174 TTCAGAGCATTTGGATGTTTGAG 57.619 39.130 0.00 0.00 35.63 3.02
2398 3396 4.401022 TCAGAGCATTTGGATGTTTGAGT 58.599 39.130 0.00 0.00 35.63 3.41
2399 3397 5.559770 TCAGAGCATTTGGATGTTTGAGTA 58.440 37.500 0.00 0.00 35.63 2.59
2400 3398 6.003326 TCAGAGCATTTGGATGTTTGAGTAA 58.997 36.000 0.00 0.00 35.63 2.24
2401 3399 6.072508 TCAGAGCATTTGGATGTTTGAGTAAC 60.073 38.462 0.00 0.00 35.63 2.50
2402 3400 6.006449 AGAGCATTTGGATGTTTGAGTAACT 58.994 36.000 0.00 0.00 37.64 2.24
2403 3401 6.150140 AGAGCATTTGGATGTTTGAGTAACTC 59.850 38.462 0.00 0.00 37.64 3.01
2404 3402 6.006449 AGCATTTGGATGTTTGAGTAACTCT 58.994 36.000 0.00 0.00 37.64 3.24
2405 3403 6.150140 AGCATTTGGATGTTTGAGTAACTCTC 59.850 38.462 0.00 0.00 38.29 3.20
2406 3404 6.072508 GCATTTGGATGTTTGAGTAACTCTCA 60.073 38.462 0.00 0.00 41.80 3.27
2407 3405 7.836486 GCATTTGGATGTTTGAGTAACTCTCAG 60.836 40.741 0.00 0.00 42.93 3.35
2436 3434 9.883142 AAAAAGACAAATTTGAGGTATGTGAAA 57.117 25.926 24.64 0.00 0.00 2.69
2437 3435 9.883142 AAAAGACAAATTTGAGGTATGTGAAAA 57.117 25.926 24.64 0.00 0.00 2.29
2438 3436 9.883142 AAAGACAAATTTGAGGTATGTGAAAAA 57.117 25.926 24.64 0.00 0.00 1.94
2439 3437 9.533253 AAGACAAATTTGAGGTATGTGAAAAAG 57.467 29.630 24.64 0.00 0.00 2.27
2440 3438 8.695456 AGACAAATTTGAGGTATGTGAAAAAGT 58.305 29.630 24.64 0.00 0.00 2.66
2441 3439 8.647143 ACAAATTTGAGGTATGTGAAAAAGTG 57.353 30.769 24.64 0.00 0.00 3.16
2442 3440 8.257306 ACAAATTTGAGGTATGTGAAAAAGTGT 58.743 29.630 24.64 0.00 0.00 3.55
2443 3441 9.743057 CAAATTTGAGGTATGTGAAAAAGTGTA 57.257 29.630 13.08 0.00 0.00 2.90
2446 3444 9.912634 ATTTGAGGTATGTGAAAAAGTGTATTG 57.087 29.630 0.00 0.00 0.00 1.90
2447 3445 8.458573 TTGAGGTATGTGAAAAAGTGTATTGT 57.541 30.769 0.00 0.00 0.00 2.71
2448 3446 8.458573 TGAGGTATGTGAAAAAGTGTATTGTT 57.541 30.769 0.00 0.00 0.00 2.83
2449 3447 8.908903 TGAGGTATGTGAAAAAGTGTATTGTTT 58.091 29.630 0.00 0.00 0.00 2.83
2450 3448 9.180678 GAGGTATGTGAAAAAGTGTATTGTTTG 57.819 33.333 0.00 0.00 0.00 2.93
2451 3449 8.691797 AGGTATGTGAAAAAGTGTATTGTTTGT 58.308 29.630 0.00 0.00 0.00 2.83
2452 3450 8.751335 GGTATGTGAAAAAGTGTATTGTTTGTG 58.249 33.333 0.00 0.00 0.00 3.33
2453 3451 6.639671 TGTGAAAAAGTGTATTGTTTGTGC 57.360 33.333 0.00 0.00 0.00 4.57
2454 3452 6.159293 TGTGAAAAAGTGTATTGTTTGTGCA 58.841 32.000 0.00 0.00 0.00 4.57
2455 3453 6.090088 TGTGAAAAAGTGTATTGTTTGTGCAC 59.910 34.615 10.75 10.75 33.15 4.57
2456 3454 6.310224 GTGAAAAAGTGTATTGTTTGTGCACT 59.690 34.615 19.41 0.00 43.01 4.40
2457 3455 7.486551 GTGAAAAAGTGTATTGTTTGTGCACTA 59.513 33.333 19.41 7.83 40.83 2.74
2458 3456 8.194104 TGAAAAAGTGTATTGTTTGTGCACTAT 58.806 29.630 19.41 6.34 40.83 2.12
2459 3457 8.940768 AAAAAGTGTATTGTTTGTGCACTATT 57.059 26.923 19.41 0.00 40.83 1.73
2460 3458 8.574196 AAAAGTGTATTGTTTGTGCACTATTC 57.426 30.769 19.41 7.62 40.83 1.75
2461 3459 5.927030 AGTGTATTGTTTGTGCACTATTCG 58.073 37.500 19.41 0.00 40.09 3.34
2462 3460 5.086058 GTGTATTGTTTGTGCACTATTCGG 58.914 41.667 19.41 0.00 30.78 4.30
2463 3461 4.998033 TGTATTGTTTGTGCACTATTCGGA 59.002 37.500 19.41 0.00 0.00 4.55
2464 3462 3.889196 TTGTTTGTGCACTATTCGGAC 57.111 42.857 19.41 5.77 0.00 4.79
2465 3463 2.147958 TGTTTGTGCACTATTCGGACC 58.852 47.619 19.41 0.00 0.00 4.46
2466 3464 1.467342 GTTTGTGCACTATTCGGACCC 59.533 52.381 19.41 0.00 0.00 4.46
2467 3465 0.687920 TTGTGCACTATTCGGACCCA 59.312 50.000 19.41 0.00 0.00 4.51
2468 3466 0.687920 TGTGCACTATTCGGACCCAA 59.312 50.000 19.41 0.00 0.00 4.12
2469 3467 1.280710 TGTGCACTATTCGGACCCAAT 59.719 47.619 19.41 0.00 0.00 3.16
2470 3468 2.290641 TGTGCACTATTCGGACCCAATT 60.291 45.455 19.41 0.00 0.00 2.32
2471 3469 2.752903 GTGCACTATTCGGACCCAATTT 59.247 45.455 10.32 0.00 0.00 1.82
2472 3470 3.192633 GTGCACTATTCGGACCCAATTTT 59.807 43.478 10.32 0.00 0.00 1.82
2473 3471 3.192422 TGCACTATTCGGACCCAATTTTG 59.808 43.478 0.00 0.00 0.00 2.44
2474 3472 3.192633 GCACTATTCGGACCCAATTTTGT 59.807 43.478 0.00 0.00 0.00 2.83
2475 3473 4.321675 GCACTATTCGGACCCAATTTTGTT 60.322 41.667 0.00 0.00 0.00 2.83
2476 3474 5.778862 CACTATTCGGACCCAATTTTGTTT 58.221 37.500 0.00 0.00 0.00 2.83
2477 3475 6.220201 CACTATTCGGACCCAATTTTGTTTT 58.780 36.000 0.00 0.00 0.00 2.43
2478 3476 6.704050 CACTATTCGGACCCAATTTTGTTTTT 59.296 34.615 0.00 0.00 0.00 1.94
2500 3498 5.929058 TTTGCTGAGATCTACTGAGATGT 57.071 39.130 0.00 0.00 42.80 3.06
2502 3500 3.888323 TGCTGAGATCTACTGAGATGTCC 59.112 47.826 8.99 0.00 47.00 4.02
2503 3501 3.888323 GCTGAGATCTACTGAGATGTCCA 59.112 47.826 8.99 0.00 47.00 4.02
2504 3502 4.340666 GCTGAGATCTACTGAGATGTCCAA 59.659 45.833 8.99 0.00 47.00 3.53
2505 3503 5.163468 GCTGAGATCTACTGAGATGTCCAAA 60.163 44.000 8.99 0.00 47.00 3.28
2506 3504 6.462768 GCTGAGATCTACTGAGATGTCCAAAT 60.463 42.308 8.99 0.00 47.00 2.32
2507 3505 6.814043 TGAGATCTACTGAGATGTCCAAATG 58.186 40.000 8.99 0.00 47.00 2.32
2508 3506 6.608808 TGAGATCTACTGAGATGTCCAAATGA 59.391 38.462 8.99 0.00 47.00 2.57
2509 3507 7.289549 TGAGATCTACTGAGATGTCCAAATGAT 59.710 37.037 8.99 0.00 47.00 2.45
2510 3508 8.032045 AGATCTACTGAGATGTCCAAATGATT 57.968 34.615 0.00 0.00 42.80 2.57
2511 3509 8.492782 AGATCTACTGAGATGTCCAAATGATTT 58.507 33.333 0.00 0.00 42.80 2.17
2512 3510 9.770097 GATCTACTGAGATGTCCAAATGATTTA 57.230 33.333 0.00 0.00 42.80 1.40
2514 3512 9.958180 TCTACTGAGATGTCCAAATGATTTAAA 57.042 29.630 0.00 0.00 0.00 1.52
2525 3523 6.835719 CAAATGATTTAAAATTTGGCACGC 57.164 33.333 13.91 0.00 39.19 5.34
2526 3524 6.369005 CAAATGATTTAAAATTTGGCACGCA 58.631 32.000 13.91 0.00 39.19 5.24
2527 3525 5.783100 ATGATTTAAAATTTGGCACGCAG 57.217 34.783 0.00 0.00 0.00 5.18
2528 3526 3.431572 TGATTTAAAATTTGGCACGCAGC 59.568 39.130 0.00 0.00 44.65 5.25
2529 3527 2.810439 TTAAAATTTGGCACGCAGCT 57.190 40.000 0.00 0.00 44.79 4.24
2530 3528 2.346099 TAAAATTTGGCACGCAGCTC 57.654 45.000 0.00 0.00 44.79 4.09
2531 3529 0.388659 AAAATTTGGCACGCAGCTCA 59.611 45.000 0.00 0.00 44.79 4.26
2532 3530 0.318955 AAATTTGGCACGCAGCTCAC 60.319 50.000 0.00 0.00 44.79 3.51
2533 3531 2.462255 AATTTGGCACGCAGCTCACG 62.462 55.000 4.17 4.17 44.79 4.35
2538 3536 3.771491 CACGCAGCTCACGCACTC 61.771 66.667 5.60 0.00 39.10 3.51
2539 3537 4.284860 ACGCAGCTCACGCACTCA 62.285 61.111 5.60 0.00 39.10 3.41
2540 3538 3.037833 CGCAGCTCACGCACTCAA 61.038 61.111 0.00 0.00 39.10 3.02
2541 3539 2.385875 CGCAGCTCACGCACTCAAT 61.386 57.895 0.00 0.00 39.10 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.783256 CGTGTCTCATTTATATCATACCGATTA 57.217 33.333 0.00 0.00 35.39 1.75
28 29 7.210718 ACGTGTCTCATTTATATCATACCGA 57.789 36.000 0.00 0.00 0.00 4.69
29 30 8.235226 AGTACGTGTCTCATTTATATCATACCG 58.765 37.037 0.00 0.00 0.00 4.02
51 53 7.601130 TCGGTGGTGATAAATAATGCATAGTAC 59.399 37.037 0.00 0.00 0.00 2.73
55 57 7.809546 TTTCGGTGGTGATAAATAATGCATA 57.190 32.000 0.00 0.00 0.00 3.14
62 64 6.326375 GCACATTTTTCGGTGGTGATAAATA 58.674 36.000 0.00 0.00 35.58 1.40
68 70 0.309302 CGCACATTTTTCGGTGGTGA 59.691 50.000 0.00 0.00 35.58 4.02
69 71 0.309302 TCGCACATTTTTCGGTGGTG 59.691 50.000 0.00 0.00 35.58 4.17
105 107 2.125147 CCATCGTCACGCCACCAT 60.125 61.111 0.00 0.00 0.00 3.55
110 112 1.592669 CCATCTCCATCGTCACGCC 60.593 63.158 0.00 0.00 0.00 5.68
165 183 0.528684 AAGCGATTCTAGCTGGCGTC 60.529 55.000 0.00 0.00 45.31 5.19
233 252 2.202703 GTGATACGGCGCGAAGGT 60.203 61.111 12.10 6.30 0.00 3.50
235 254 1.944676 GGAGTGATACGGCGCGAAG 60.945 63.158 12.10 4.68 0.00 3.79
239 258 2.279517 CTGGGAGTGATACGGCGC 60.280 66.667 6.90 0.00 0.00 6.53
240 259 0.108329 AAACTGGGAGTGATACGGCG 60.108 55.000 4.80 4.80 0.00 6.46
241 260 1.737793 CAAAACTGGGAGTGATACGGC 59.262 52.381 0.00 0.00 0.00 5.68
242 261 3.056107 TCTCAAAACTGGGAGTGATACGG 60.056 47.826 0.00 0.00 32.93 4.02
243 262 4.188247 TCTCAAAACTGGGAGTGATACG 57.812 45.455 0.00 0.00 32.93 3.06
244 263 7.454260 AATTTCTCAAAACTGGGAGTGATAC 57.546 36.000 0.00 0.00 32.93 2.24
245 264 9.010029 GTTAATTTCTCAAAACTGGGAGTGATA 57.990 33.333 0.00 0.00 32.93 2.15
246 265 7.505585 TGTTAATTTCTCAAAACTGGGAGTGAT 59.494 33.333 0.00 0.00 32.93 3.06
247 266 6.831353 TGTTAATTTCTCAAAACTGGGAGTGA 59.169 34.615 0.00 0.00 32.93 3.41
248 267 7.038154 TGTTAATTTCTCAAAACTGGGAGTG 57.962 36.000 0.00 0.00 32.93 3.51
249 268 7.342026 ACTTGTTAATTTCTCAAAACTGGGAGT 59.658 33.333 0.00 0.00 32.93 3.85
250 269 7.649306 CACTTGTTAATTTCTCAAAACTGGGAG 59.351 37.037 0.00 0.00 0.00 4.30
251 270 7.123547 ACACTTGTTAATTTCTCAAAACTGGGA 59.876 33.333 0.00 0.00 0.00 4.37
252 271 7.264947 ACACTTGTTAATTTCTCAAAACTGGG 58.735 34.615 0.00 0.00 0.00 4.45
253 272 8.594687 CAACACTTGTTAATTTCTCAAAACTGG 58.405 33.333 0.00 0.00 36.32 4.00
254 273 9.139174 ACAACACTTGTTAATTTCTCAAAACTG 57.861 29.630 0.00 0.00 42.22 3.16
255 274 9.139174 CACAACACTTGTTAATTTCTCAAAACT 57.861 29.630 0.00 0.00 43.23 2.66
256 275 7.897800 GCACAACACTTGTTAATTTCTCAAAAC 59.102 33.333 0.00 0.00 43.23 2.43
257 276 7.816995 AGCACAACACTTGTTAATTTCTCAAAA 59.183 29.630 0.00 0.00 43.23 2.44
258 277 7.319646 AGCACAACACTTGTTAATTTCTCAAA 58.680 30.769 0.00 0.00 43.23 2.69
259 278 6.862209 AGCACAACACTTGTTAATTTCTCAA 58.138 32.000 0.00 0.00 43.23 3.02
260 279 6.449635 AGCACAACACTTGTTAATTTCTCA 57.550 33.333 0.00 0.00 43.23 3.27
261 280 5.621228 CGAGCACAACACTTGTTAATTTCTC 59.379 40.000 0.00 0.00 43.23 2.87
262 281 5.510671 CGAGCACAACACTTGTTAATTTCT 58.489 37.500 0.00 0.00 43.23 2.52
263 282 4.146443 GCGAGCACAACACTTGTTAATTTC 59.854 41.667 0.00 0.00 43.23 2.17
264 283 4.041723 GCGAGCACAACACTTGTTAATTT 58.958 39.130 0.00 0.00 43.23 1.82
265 284 3.550030 GGCGAGCACAACACTTGTTAATT 60.550 43.478 0.00 0.00 43.23 1.40
266 285 2.031157 GGCGAGCACAACACTTGTTAAT 60.031 45.455 0.00 0.00 43.23 1.40
267 286 1.332375 GGCGAGCACAACACTTGTTAA 59.668 47.619 0.00 0.00 43.23 2.01
268 287 0.941542 GGCGAGCACAACACTTGTTA 59.058 50.000 0.00 0.00 43.23 2.41
269 288 1.724582 GGGCGAGCACAACACTTGTT 61.725 55.000 0.00 0.00 43.23 2.83
270 289 2.186826 GGGCGAGCACAACACTTGT 61.187 57.895 0.00 0.00 46.75 3.16
271 290 0.602638 TAGGGCGAGCACAACACTTG 60.603 55.000 0.00 0.00 0.00 3.16
272 291 0.602905 GTAGGGCGAGCACAACACTT 60.603 55.000 0.00 0.00 0.00 3.16
273 292 1.004918 GTAGGGCGAGCACAACACT 60.005 57.895 0.00 0.00 0.00 3.55
274 293 2.033194 GGTAGGGCGAGCACAACAC 61.033 63.158 0.00 0.00 0.00 3.32
275 294 2.345991 GGTAGGGCGAGCACAACA 59.654 61.111 0.00 0.00 0.00 3.33
276 295 2.436115 GGGTAGGGCGAGCACAAC 60.436 66.667 0.00 0.00 0.00 3.32
277 296 2.808761 TAGGGGTAGGGCGAGCACAA 62.809 60.000 0.00 0.00 0.00 3.33
278 297 3.305619 TAGGGGTAGGGCGAGCACA 62.306 63.158 0.00 0.00 0.00 4.57
279 298 2.443390 TAGGGGTAGGGCGAGCAC 60.443 66.667 0.00 0.00 0.00 4.40
280 299 2.443390 GTAGGGGTAGGGCGAGCA 60.443 66.667 0.00 0.00 0.00 4.26
325 349 1.301623 CCCGCCCTTGTCCATGTTA 59.698 57.895 0.00 0.00 0.00 2.41
371 395 2.181021 CGACCAGGCAGACGGTAC 59.819 66.667 0.00 0.00 34.99 3.34
395 419 3.002791 TGATCTACGCTGCTTCAAAAGG 58.997 45.455 0.00 0.00 0.00 3.11
447 493 2.091541 GATTCCTCCGTCAAATTGGCA 58.908 47.619 0.00 0.00 0.00 4.92
450 496 5.182001 AGTTCAAGATTCCTCCGTCAAATTG 59.818 40.000 0.00 0.00 0.00 2.32
452 498 4.911390 AGTTCAAGATTCCTCCGTCAAAT 58.089 39.130 0.00 0.00 0.00 2.32
459 505 5.644206 GTGGACTTTAGTTCAAGATTCCTCC 59.356 44.000 0.00 0.00 34.88 4.30
460 506 6.370166 CAGTGGACTTTAGTTCAAGATTCCTC 59.630 42.308 0.00 0.00 34.88 3.71
462 508 6.231211 TCAGTGGACTTTAGTTCAAGATTCC 58.769 40.000 0.00 0.00 34.88 3.01
463 509 7.226720 TGTTCAGTGGACTTTAGTTCAAGATTC 59.773 37.037 2.55 0.00 34.88 2.52
465 511 6.483640 GTGTTCAGTGGACTTTAGTTCAAGAT 59.516 38.462 2.55 0.00 34.88 2.40
466 512 5.815740 GTGTTCAGTGGACTTTAGTTCAAGA 59.184 40.000 2.55 0.00 34.88 3.02
467 513 5.276868 CGTGTTCAGTGGACTTTAGTTCAAG 60.277 44.000 2.55 0.00 34.88 3.02
617 829 1.658994 GTGGGTTTCACGACACTTGA 58.341 50.000 0.00 0.00 36.56 3.02
646 858 0.394192 TGCTCCTGCTCCATTATCGG 59.606 55.000 0.00 0.00 40.48 4.18
669 881 1.291877 CTGCTCAGGTACACGGTTGC 61.292 60.000 0.00 0.00 0.00 4.17
670 882 1.291877 GCTGCTCAGGTACACGGTTG 61.292 60.000 0.00 0.00 0.00 3.77
682 1145 1.297689 GTCATGTGAGGGCTGCTCA 59.702 57.895 0.74 0.00 0.00 4.26
722 1190 6.346096 AGGTCAGCGCATCTAAGTAAATAAA 58.654 36.000 11.47 0.00 0.00 1.40
725 1193 4.408182 AGGTCAGCGCATCTAAGTAAAT 57.592 40.909 11.47 0.00 0.00 1.40
727 1195 3.194755 TCAAGGTCAGCGCATCTAAGTAA 59.805 43.478 11.47 0.00 0.00 2.24
729 1197 1.550524 TCAAGGTCAGCGCATCTAAGT 59.449 47.619 11.47 0.00 0.00 2.24
730 1198 2.299993 TCAAGGTCAGCGCATCTAAG 57.700 50.000 11.47 0.00 0.00 2.18
745 1297 1.013596 TGTTGTGCGTGGAGTTCAAG 58.986 50.000 0.00 0.00 0.00 3.02
796 1748 3.653113 GCGCATTAAATGTACGATGTTCG 59.347 43.478 0.30 0.00 46.93 3.95
861 1813 0.035056 CTAGCCTTGGACCTTGGTGG 60.035 60.000 0.00 0.00 42.93 4.61
936 1889 2.101415 TCGATCGATGCTTCAGGTTCAT 59.899 45.455 15.15 0.00 0.00 2.57
961 1914 4.854399 TGCAAATCACCAAAACTAACTCG 58.146 39.130 0.00 0.00 0.00 4.18
1003 1960 0.540923 CTTCCTCTTCCCTGAGCCAG 59.459 60.000 0.00 0.00 33.02 4.85
1225 2182 0.905357 TGCCTAGCTGGAAGAGAACC 59.095 55.000 0.00 0.00 38.35 3.62
1266 2223 7.917003 TGCAACAATGGAGAAGGCTATATATA 58.083 34.615 0.00 0.00 0.00 0.86
1267 2224 6.782986 TGCAACAATGGAGAAGGCTATATAT 58.217 36.000 0.00 0.00 0.00 0.86
1268 2225 6.186420 TGCAACAATGGAGAAGGCTATATA 57.814 37.500 0.00 0.00 0.00 0.86
1269 2226 5.052693 TGCAACAATGGAGAAGGCTATAT 57.947 39.130 0.00 0.00 0.00 0.86
1273 2230 2.226962 ATGCAACAATGGAGAAGGCT 57.773 45.000 0.00 0.00 0.00 4.58
1276 2233 3.956199 ACCCATATGCAACAATGGAGAAG 59.044 43.478 21.52 11.05 44.62 2.85
1293 2250 0.810648 CATGTAAGCACGCAACCCAT 59.189 50.000 0.00 0.00 0.00 4.00
1294 2251 0.536233 ACATGTAAGCACGCAACCCA 60.536 50.000 0.00 0.00 0.00 4.51
1304 2261 3.002656 CCATTCCATCGACACATGTAAGC 59.997 47.826 0.00 0.00 0.00 3.09
1596 2588 1.004200 AGTTAAACGACGGCCAGGG 60.004 57.895 2.24 0.00 0.00 4.45
1613 2605 2.260869 CCCAACAAGGCACGGACAG 61.261 63.158 0.00 0.00 35.39 3.51
1689 2681 7.857389 CACATGATCCACGATAAATTAGGTTTG 59.143 37.037 0.00 0.00 0.00 2.93
1710 2702 5.635280 AGTTTACTCGATGAAGACACACATG 59.365 40.000 0.00 0.00 0.00 3.21
1808 2800 0.456221 ACGAGCCGTCCATCTAGTTG 59.544 55.000 0.00 0.00 33.69 3.16
1809 2801 2.048444 TACGAGCCGTCCATCTAGTT 57.952 50.000 3.45 0.00 41.54 2.24
1810 2802 2.048444 TTACGAGCCGTCCATCTAGT 57.952 50.000 3.45 0.00 41.54 2.57
1811 2803 3.644884 ATTTACGAGCCGTCCATCTAG 57.355 47.619 3.45 0.00 41.54 2.43
1812 2804 3.549423 CGAATTTACGAGCCGTCCATCTA 60.549 47.826 3.45 0.00 41.54 1.98
1813 2805 2.798499 CGAATTTACGAGCCGTCCATCT 60.798 50.000 3.45 0.00 41.54 2.90
1814 2806 1.521423 CGAATTTACGAGCCGTCCATC 59.479 52.381 3.45 0.00 41.54 3.51
1815 2807 1.567504 CGAATTTACGAGCCGTCCAT 58.432 50.000 3.45 0.00 41.54 3.41
1816 2808 1.079875 GCGAATTTACGAGCCGTCCA 61.080 55.000 3.45 0.00 41.54 4.02
1817 2809 1.634753 GCGAATTTACGAGCCGTCC 59.365 57.895 3.45 0.00 41.54 4.79
1818 2810 1.634753 GGCGAATTTACGAGCCGTC 59.365 57.895 3.45 0.00 41.54 4.79
1819 2811 3.790177 GGCGAATTTACGAGCCGT 58.210 55.556 5.58 5.58 44.35 5.68
1822 2814 3.545633 GATGATTGGCGAATTTACGAGC 58.454 45.455 0.00 0.00 35.09 5.03
1823 2815 3.245284 ACGATGATTGGCGAATTTACGAG 59.755 43.478 16.45 3.07 35.09 4.18
1824 2816 3.191669 ACGATGATTGGCGAATTTACGA 58.808 40.909 16.45 0.00 35.09 3.43
1825 2817 3.585748 ACGATGATTGGCGAATTTACG 57.414 42.857 0.00 4.78 0.00 3.18
1826 2818 5.802064 TGTTACGATGATTGGCGAATTTAC 58.198 37.500 0.00 0.00 0.00 2.01
1827 2819 5.583061 ACTGTTACGATGATTGGCGAATTTA 59.417 36.000 0.00 0.00 0.00 1.40
1828 2820 4.394920 ACTGTTACGATGATTGGCGAATTT 59.605 37.500 0.00 0.00 0.00 1.82
1829 2821 3.938963 ACTGTTACGATGATTGGCGAATT 59.061 39.130 0.00 0.00 0.00 2.17
1830 2822 3.531538 ACTGTTACGATGATTGGCGAAT 58.468 40.909 0.00 0.00 0.00 3.34
1831 2823 2.967362 ACTGTTACGATGATTGGCGAA 58.033 42.857 0.00 0.00 0.00 4.70
1832 2824 2.665649 ACTGTTACGATGATTGGCGA 57.334 45.000 0.00 0.00 0.00 5.54
1833 2825 2.415168 ACAACTGTTACGATGATTGGCG 59.585 45.455 0.00 0.00 0.00 5.69
1834 2826 5.539582 TTACAACTGTTACGATGATTGGC 57.460 39.130 0.00 0.00 0.00 4.52
1835 2827 8.192068 TGTATTACAACTGTTACGATGATTGG 57.808 34.615 0.00 0.00 0.00 3.16
1851 2843 6.007485 TGGGATGGCATAGTTGTATTACAA 57.993 37.500 0.00 5.14 35.42 2.41
1852 2844 5.638530 TGGGATGGCATAGTTGTATTACA 57.361 39.130 0.00 0.00 0.00 2.41
1853 2845 6.062095 AGTTGGGATGGCATAGTTGTATTAC 58.938 40.000 0.00 0.00 0.00 1.89
1854 2846 6.260700 AGTTGGGATGGCATAGTTGTATTA 57.739 37.500 0.00 0.00 0.00 0.98
1855 2847 5.129368 AGTTGGGATGGCATAGTTGTATT 57.871 39.130 0.00 0.00 0.00 1.89
1856 2848 4.796110 AGTTGGGATGGCATAGTTGTAT 57.204 40.909 0.00 0.00 0.00 2.29
1857 2849 4.269183 CAAGTTGGGATGGCATAGTTGTA 58.731 43.478 0.00 0.00 0.00 2.41
1858 2850 3.091545 CAAGTTGGGATGGCATAGTTGT 58.908 45.455 0.00 0.00 0.00 3.32
1859 2851 2.159198 GCAAGTTGGGATGGCATAGTTG 60.159 50.000 0.00 5.58 0.00 3.16
1860 2852 2.102578 GCAAGTTGGGATGGCATAGTT 58.897 47.619 0.00 0.00 0.00 2.24
1865 2857 0.611618 ATTCGCAAGTTGGGATGGCA 60.612 50.000 21.76 8.75 39.13 4.92
1872 2864 2.419673 TGCATGACTATTCGCAAGTTGG 59.580 45.455 4.75 0.00 39.48 3.77
1874 2866 3.065786 CCATGCATGACTATTCGCAAGTT 59.934 43.478 28.31 0.00 38.01 2.66
1879 2871 3.969117 TTTCCATGCATGACTATTCGC 57.031 42.857 28.31 0.00 0.00 4.70
1882 2874 4.467082 TGCCTTTTTCCATGCATGACTATT 59.533 37.500 28.31 0.00 0.00 1.73
2041 3033 8.296000 TGATGAGATTTGAGTTTGCGAAAATTA 58.704 29.630 0.00 0.00 0.00 1.40
2043 3035 6.680810 TGATGAGATTTGAGTTTGCGAAAAT 58.319 32.000 0.00 0.00 0.00 1.82
2066 3058 6.198966 GCGGGAACTTTCTGCAATATATTTTG 59.801 38.462 0.00 1.86 0.00 2.44
2067 3059 6.127479 TGCGGGAACTTTCTGCAATATATTTT 60.127 34.615 0.54 0.00 36.27 1.82
2078 3070 2.727916 GCGTTAATGCGGGAACTTTCTG 60.728 50.000 3.44 0.00 0.00 3.02
2080 3072 1.891178 GCGTTAATGCGGGAACTTTC 58.109 50.000 3.44 0.00 0.00 2.62
2090 3082 0.094730 GATATCCCGCGCGTTAATGC 59.905 55.000 29.95 9.74 0.00 3.56
2094 3086 0.885879 AGATGATATCCCGCGCGTTA 59.114 50.000 29.95 16.75 0.00 3.18
2115 3107 6.142817 CCAAGCACTTATGTTTCACAGTAAC 58.857 40.000 0.00 0.00 0.00 2.50
2119 3111 4.836125 ACCAAGCACTTATGTTTCACAG 57.164 40.909 0.00 0.00 0.00 3.66
2149 3142 9.830975 TCAACCATACCATCCATATATATTTCG 57.169 33.333 0.00 0.00 0.00 3.46
2186 3179 3.403038 ACGAGCAAATAGGTATGGCATC 58.597 45.455 1.65 0.00 0.00 3.91
2227 3225 5.779771 TGCTTTCCAACTATCATCCCTTTTT 59.220 36.000 0.00 0.00 0.00 1.94
2228 3226 5.332743 TGCTTTCCAACTATCATCCCTTTT 58.667 37.500 0.00 0.00 0.00 2.27
2229 3227 4.934356 TGCTTTCCAACTATCATCCCTTT 58.066 39.130 0.00 0.00 0.00 3.11
2230 3228 4.530875 CTGCTTTCCAACTATCATCCCTT 58.469 43.478 0.00 0.00 0.00 3.95
2231 3229 3.686691 GCTGCTTTCCAACTATCATCCCT 60.687 47.826 0.00 0.00 0.00 4.20
2232 3230 2.620585 GCTGCTTTCCAACTATCATCCC 59.379 50.000 0.00 0.00 0.00 3.85
2233 3231 2.289002 CGCTGCTTTCCAACTATCATCC 59.711 50.000 0.00 0.00 0.00 3.51
2234 3232 2.939103 ACGCTGCTTTCCAACTATCATC 59.061 45.455 0.00 0.00 0.00 2.92
2235 3233 2.991250 ACGCTGCTTTCCAACTATCAT 58.009 42.857 0.00 0.00 0.00 2.45
2236 3234 2.472695 ACGCTGCTTTCCAACTATCA 57.527 45.000 0.00 0.00 0.00 2.15
2237 3235 3.831715 AAACGCTGCTTTCCAACTATC 57.168 42.857 0.00 0.00 0.00 2.08
2238 3236 3.305335 CCAAAACGCTGCTTTCCAACTAT 60.305 43.478 0.00 0.00 0.00 2.12
2239 3237 2.034053 CCAAAACGCTGCTTTCCAACTA 59.966 45.455 0.00 0.00 0.00 2.24
2240 3238 1.202405 CCAAAACGCTGCTTTCCAACT 60.202 47.619 0.00 0.00 0.00 3.16
2241 3239 1.208259 CCAAAACGCTGCTTTCCAAC 58.792 50.000 0.00 0.00 0.00 3.77
2242 3240 0.529555 GCCAAAACGCTGCTTTCCAA 60.530 50.000 0.00 0.00 0.00 3.53
2243 3241 1.067250 GCCAAAACGCTGCTTTCCA 59.933 52.632 0.00 0.00 0.00 3.53
2244 3242 0.664466 GAGCCAAAACGCTGCTTTCC 60.664 55.000 0.00 0.00 39.87 3.13
2245 3243 0.664466 GGAGCCAAAACGCTGCTTTC 60.664 55.000 0.00 0.00 43.31 2.62
2246 3244 1.363807 GGAGCCAAAACGCTGCTTT 59.636 52.632 0.00 0.00 43.31 3.51
2247 3245 2.564721 GGGAGCCAAAACGCTGCTT 61.565 57.895 0.00 0.00 45.69 3.91
2248 3246 2.985847 GGGAGCCAAAACGCTGCT 60.986 61.111 0.00 0.00 45.69 4.24
2249 3247 1.312371 TATGGGAGCCAAAACGCTGC 61.312 55.000 0.00 0.00 45.68 5.25
2250 3248 1.066002 CATATGGGAGCCAAAACGCTG 59.934 52.381 0.00 0.00 39.87 5.18
2251 3249 1.064758 TCATATGGGAGCCAAAACGCT 60.065 47.619 2.13 0.00 43.42 5.07
2252 3250 1.334869 CTCATATGGGAGCCAAAACGC 59.665 52.381 0.00 0.00 36.95 4.84
2261 3259 1.536418 TCCCGGGCTCATATGGGAG 60.536 63.158 18.49 0.00 45.66 4.30
2263 3261 1.843376 ACTCCCGGGCTCATATGGG 60.843 63.158 18.49 0.00 43.36 4.00
2264 3262 1.121407 TCACTCCCGGGCTCATATGG 61.121 60.000 18.49 0.00 0.00 2.74
2265 3263 0.034059 GTCACTCCCGGGCTCATATG 59.966 60.000 18.49 7.37 0.00 1.78
2266 3264 0.398522 TGTCACTCCCGGGCTCATAT 60.399 55.000 18.49 0.00 0.00 1.78
2267 3265 0.616395 TTGTCACTCCCGGGCTCATA 60.616 55.000 18.49 0.00 0.00 2.15
2268 3266 1.488705 TTTGTCACTCCCGGGCTCAT 61.489 55.000 18.49 0.00 0.00 2.90
2269 3267 1.701031 TTTTGTCACTCCCGGGCTCA 61.701 55.000 18.49 7.21 0.00 4.26
2270 3268 0.536460 TTTTTGTCACTCCCGGGCTC 60.536 55.000 18.49 4.40 0.00 4.70
2271 3269 1.534697 TTTTTGTCACTCCCGGGCT 59.465 52.632 18.49 0.00 0.00 5.19
2272 3270 4.167597 TTTTTGTCACTCCCGGGC 57.832 55.556 18.49 0.73 0.00 6.13
2321 3319 9.481340 CATCTTTCTCCACAATAGAATTCGATA 57.519 33.333 1.15 0.00 33.17 2.92
2322 3320 8.206867 TCATCTTTCTCCACAATAGAATTCGAT 58.793 33.333 0.00 0.00 33.17 3.59
2323 3321 7.555965 TCATCTTTCTCCACAATAGAATTCGA 58.444 34.615 0.00 0.00 33.17 3.71
2324 3322 7.776933 TCATCTTTCTCCACAATAGAATTCG 57.223 36.000 0.00 0.00 33.17 3.34
2325 3323 9.947669 CAATCATCTTTCTCCACAATAGAATTC 57.052 33.333 0.00 0.00 33.17 2.17
2326 3324 9.690913 TCAATCATCTTTCTCCACAATAGAATT 57.309 29.630 0.00 0.00 33.17 2.17
2327 3325 9.339850 CTCAATCATCTTTCTCCACAATAGAAT 57.660 33.333 0.00 0.00 33.17 2.40
2328 3326 8.324306 ACTCAATCATCTTTCTCCACAATAGAA 58.676 33.333 0.00 0.00 0.00 2.10
2329 3327 7.767659 CACTCAATCATCTTTCTCCACAATAGA 59.232 37.037 0.00 0.00 0.00 1.98
2330 3328 7.466996 GCACTCAATCATCTTTCTCCACAATAG 60.467 40.741 0.00 0.00 0.00 1.73
2331 3329 6.317140 GCACTCAATCATCTTTCTCCACAATA 59.683 38.462 0.00 0.00 0.00 1.90
2332 3330 5.125097 GCACTCAATCATCTTTCTCCACAAT 59.875 40.000 0.00 0.00 0.00 2.71
2333 3331 4.456911 GCACTCAATCATCTTTCTCCACAA 59.543 41.667 0.00 0.00 0.00 3.33
2334 3332 4.005650 GCACTCAATCATCTTTCTCCACA 58.994 43.478 0.00 0.00 0.00 4.17
2335 3333 3.063180 CGCACTCAATCATCTTTCTCCAC 59.937 47.826 0.00 0.00 0.00 4.02
2336 3334 3.264947 CGCACTCAATCATCTTTCTCCA 58.735 45.455 0.00 0.00 0.00 3.86
2337 3335 3.063180 CACGCACTCAATCATCTTTCTCC 59.937 47.826 0.00 0.00 0.00 3.71
2338 3336 3.928992 TCACGCACTCAATCATCTTTCTC 59.071 43.478 0.00 0.00 0.00 2.87
2339 3337 3.930336 TCACGCACTCAATCATCTTTCT 58.070 40.909 0.00 0.00 0.00 2.52
2340 3338 4.330894 TCATCACGCACTCAATCATCTTTC 59.669 41.667 0.00 0.00 0.00 2.62
2341 3339 4.093998 GTCATCACGCACTCAATCATCTTT 59.906 41.667 0.00 0.00 0.00 2.52
2342 3340 3.620374 GTCATCACGCACTCAATCATCTT 59.380 43.478 0.00 0.00 0.00 2.40
2343 3341 3.193263 GTCATCACGCACTCAATCATCT 58.807 45.455 0.00 0.00 0.00 2.90
2344 3342 2.286294 GGTCATCACGCACTCAATCATC 59.714 50.000 0.00 0.00 0.00 2.92
2345 3343 2.283298 GGTCATCACGCACTCAATCAT 58.717 47.619 0.00 0.00 0.00 2.45
2346 3344 1.725641 GGTCATCACGCACTCAATCA 58.274 50.000 0.00 0.00 0.00 2.57
2347 3345 0.647410 CGGTCATCACGCACTCAATC 59.353 55.000 0.00 0.00 0.00 2.67
2348 3346 0.037326 ACGGTCATCACGCACTCAAT 60.037 50.000 0.00 0.00 34.00 2.57
2349 3347 0.943835 CACGGTCATCACGCACTCAA 60.944 55.000 0.00 0.00 34.00 3.02
2350 3348 1.372872 CACGGTCATCACGCACTCA 60.373 57.895 0.00 0.00 34.00 3.41
2351 3349 2.730672 GCACGGTCATCACGCACTC 61.731 63.158 0.00 0.00 34.00 3.51
2352 3350 2.738521 GCACGGTCATCACGCACT 60.739 61.111 0.00 0.00 34.00 4.40
2353 3351 3.788766 GGCACGGTCATCACGCAC 61.789 66.667 0.00 0.00 34.00 5.34
2354 3352 3.816367 TTGGCACGGTCATCACGCA 62.816 57.895 0.00 0.00 34.00 5.24
2355 3353 1.922135 ATTTGGCACGGTCATCACGC 61.922 55.000 0.00 0.00 34.00 5.34
2356 3354 0.521291 AATTTGGCACGGTCATCACG 59.479 50.000 0.00 0.00 37.36 4.35
2357 3355 2.030363 TGAAATTTGGCACGGTCATCAC 60.030 45.455 0.00 0.00 0.00 3.06
2358 3356 2.228582 CTGAAATTTGGCACGGTCATCA 59.771 45.455 0.00 0.00 0.00 3.07
2359 3357 2.487762 TCTGAAATTTGGCACGGTCATC 59.512 45.455 0.00 0.00 0.00 2.92
2360 3358 2.489329 CTCTGAAATTTGGCACGGTCAT 59.511 45.455 0.00 0.00 0.00 3.06
2361 3359 1.879380 CTCTGAAATTTGGCACGGTCA 59.121 47.619 0.00 0.00 0.00 4.02
2362 3360 1.401539 GCTCTGAAATTTGGCACGGTC 60.402 52.381 0.00 0.00 0.00 4.79
2363 3361 0.598065 GCTCTGAAATTTGGCACGGT 59.402 50.000 0.00 0.00 0.00 4.83
2364 3362 0.597568 TGCTCTGAAATTTGGCACGG 59.402 50.000 0.00 0.00 0.00 4.94
2365 3363 2.642139 ATGCTCTGAAATTTGGCACG 57.358 45.000 0.00 0.00 35.72 5.34
2366 3364 4.657075 CAAATGCTCTGAAATTTGGCAC 57.343 40.909 13.68 0.00 39.19 5.01
2370 3368 7.171848 TCAAACATCCAAATGCTCTGAAATTTG 59.828 33.333 14.21 14.21 41.41 2.32
2371 3369 7.218614 TCAAACATCCAAATGCTCTGAAATTT 58.781 30.769 0.00 0.00 36.26 1.82
2372 3370 6.761312 TCAAACATCCAAATGCTCTGAAATT 58.239 32.000 0.00 0.00 36.26 1.82
2373 3371 6.014840 ACTCAAACATCCAAATGCTCTGAAAT 60.015 34.615 0.00 0.00 36.26 2.17
2374 3372 5.302568 ACTCAAACATCCAAATGCTCTGAAA 59.697 36.000 0.00 0.00 36.26 2.69
2375 3373 4.828939 ACTCAAACATCCAAATGCTCTGAA 59.171 37.500 0.00 0.00 36.26 3.02
2376 3374 4.401022 ACTCAAACATCCAAATGCTCTGA 58.599 39.130 0.00 0.00 36.26 3.27
2377 3375 4.778534 ACTCAAACATCCAAATGCTCTG 57.221 40.909 0.00 0.00 36.26 3.35
2378 3376 6.006449 AGTTACTCAAACATCCAAATGCTCT 58.994 36.000 0.00 0.00 40.83 4.09
2379 3377 6.150140 AGAGTTACTCAAACATCCAAATGCTC 59.850 38.462 15.23 0.00 40.83 4.26
2380 3378 6.006449 AGAGTTACTCAAACATCCAAATGCT 58.994 36.000 15.23 0.00 40.83 3.79
2381 3379 6.259550 AGAGTTACTCAAACATCCAAATGC 57.740 37.500 15.23 0.00 40.83 3.56
2410 3408 9.883142 TTTCACATACCTCAAATTTGTCTTTTT 57.117 25.926 17.47 1.38 0.00 1.94
2411 3409 9.883142 TTTTCACATACCTCAAATTTGTCTTTT 57.117 25.926 17.47 2.65 0.00 2.27
2412 3410 9.883142 TTTTTCACATACCTCAAATTTGTCTTT 57.117 25.926 17.47 4.24 0.00 2.52
2413 3411 9.533253 CTTTTTCACATACCTCAAATTTGTCTT 57.467 29.630 17.47 5.87 0.00 3.01
2414 3412 8.695456 ACTTTTTCACATACCTCAAATTTGTCT 58.305 29.630 17.47 4.50 0.00 3.41
2415 3413 8.755018 CACTTTTTCACATACCTCAAATTTGTC 58.245 33.333 17.47 0.00 0.00 3.18
2416 3414 8.257306 ACACTTTTTCACATACCTCAAATTTGT 58.743 29.630 17.47 1.67 0.00 2.83
2417 3415 8.647143 ACACTTTTTCACATACCTCAAATTTG 57.353 30.769 12.15 12.15 0.00 2.32
2420 3418 9.912634 CAATACACTTTTTCACATACCTCAAAT 57.087 29.630 0.00 0.00 0.00 2.32
2421 3419 8.908903 ACAATACACTTTTTCACATACCTCAAA 58.091 29.630 0.00 0.00 0.00 2.69
2422 3420 8.458573 ACAATACACTTTTTCACATACCTCAA 57.541 30.769 0.00 0.00 0.00 3.02
2423 3421 8.458573 AACAATACACTTTTTCACATACCTCA 57.541 30.769 0.00 0.00 0.00 3.86
2424 3422 9.180678 CAAACAATACACTTTTTCACATACCTC 57.819 33.333 0.00 0.00 0.00 3.85
2425 3423 8.691797 ACAAACAATACACTTTTTCACATACCT 58.308 29.630 0.00 0.00 0.00 3.08
2426 3424 8.751335 CACAAACAATACACTTTTTCACATACC 58.249 33.333 0.00 0.00 0.00 2.73
2427 3425 8.265998 GCACAAACAATACACTTTTTCACATAC 58.734 33.333 0.00 0.00 0.00 2.39
2428 3426 7.976175 TGCACAAACAATACACTTTTTCACATA 59.024 29.630 0.00 0.00 0.00 2.29
2429 3427 6.815641 TGCACAAACAATACACTTTTTCACAT 59.184 30.769 0.00 0.00 0.00 3.21
2430 3428 6.090088 GTGCACAAACAATACACTTTTTCACA 59.910 34.615 13.17 0.00 0.00 3.58
2431 3429 6.310224 AGTGCACAAACAATACACTTTTTCAC 59.690 34.615 21.04 0.00 38.38 3.18
2432 3430 6.393990 AGTGCACAAACAATACACTTTTTCA 58.606 32.000 21.04 0.00 38.38 2.69
2433 3431 6.885735 AGTGCACAAACAATACACTTTTTC 57.114 33.333 21.04 0.00 38.38 2.29
2434 3432 8.940768 AATAGTGCACAAACAATACACTTTTT 57.059 26.923 21.04 0.00 41.56 1.94
2435 3433 7.378461 CGAATAGTGCACAAACAATACACTTTT 59.622 33.333 21.04 0.00 41.56 2.27
2436 3434 6.855914 CGAATAGTGCACAAACAATACACTTT 59.144 34.615 21.04 0.00 41.56 2.66
2437 3435 6.370593 CGAATAGTGCACAAACAATACACTT 58.629 36.000 21.04 0.00 41.56 3.16
2438 3436 5.106712 CCGAATAGTGCACAAACAATACACT 60.107 40.000 21.04 0.00 43.60 3.55
2439 3437 5.086058 CCGAATAGTGCACAAACAATACAC 58.914 41.667 21.04 0.00 0.00 2.90
2440 3438 4.998033 TCCGAATAGTGCACAAACAATACA 59.002 37.500 21.04 0.00 0.00 2.29
2441 3439 5.321516 GTCCGAATAGTGCACAAACAATAC 58.678 41.667 21.04 5.86 0.00 1.89
2442 3440 4.393680 GGTCCGAATAGTGCACAAACAATA 59.606 41.667 21.04 1.15 0.00 1.90
2443 3441 3.190535 GGTCCGAATAGTGCACAAACAAT 59.809 43.478 21.04 0.00 0.00 2.71
2444 3442 2.550606 GGTCCGAATAGTGCACAAACAA 59.449 45.455 21.04 0.00 0.00 2.83
2445 3443 2.147958 GGTCCGAATAGTGCACAAACA 58.852 47.619 21.04 0.88 0.00 2.83
2446 3444 1.467342 GGGTCCGAATAGTGCACAAAC 59.533 52.381 21.04 6.45 0.00 2.93
2447 3445 1.072489 TGGGTCCGAATAGTGCACAAA 59.928 47.619 21.04 7.03 0.00 2.83
2448 3446 0.687920 TGGGTCCGAATAGTGCACAA 59.312 50.000 21.04 0.00 0.00 3.33
2449 3447 0.687920 TTGGGTCCGAATAGTGCACA 59.312 50.000 21.04 5.47 0.00 4.57
2450 3448 2.038387 ATTGGGTCCGAATAGTGCAC 57.962 50.000 9.40 9.40 0.00 4.57
2451 3449 2.799126 AATTGGGTCCGAATAGTGCA 57.201 45.000 0.00 0.00 0.00 4.57
2452 3450 3.192633 ACAAAATTGGGTCCGAATAGTGC 59.807 43.478 0.00 0.00 0.00 4.40
2453 3451 5.385509 AACAAAATTGGGTCCGAATAGTG 57.614 39.130 0.00 4.14 0.00 2.74
2454 3452 6.413783 AAAACAAAATTGGGTCCGAATAGT 57.586 33.333 0.00 0.00 0.00 2.12
2476 3474 6.705302 ACATCTCAGTAGATCTCAGCAAAAA 58.295 36.000 0.00 0.00 40.65 1.94
2477 3475 6.291648 ACATCTCAGTAGATCTCAGCAAAA 57.708 37.500 0.00 0.00 40.65 2.44
2478 3476 5.163468 GGACATCTCAGTAGATCTCAGCAAA 60.163 44.000 0.00 0.00 40.65 3.68
2479 3477 4.340666 GGACATCTCAGTAGATCTCAGCAA 59.659 45.833 0.00 0.00 40.65 3.91
2480 3478 3.888323 GGACATCTCAGTAGATCTCAGCA 59.112 47.826 0.00 0.00 40.65 4.41
2481 3479 3.888323 TGGACATCTCAGTAGATCTCAGC 59.112 47.826 0.00 0.00 40.65 4.26
2482 3480 6.462552 TTTGGACATCTCAGTAGATCTCAG 57.537 41.667 0.00 0.00 40.65 3.35
2483 3481 6.608808 TCATTTGGACATCTCAGTAGATCTCA 59.391 38.462 0.00 0.00 40.65 3.27
2484 3482 7.048629 TCATTTGGACATCTCAGTAGATCTC 57.951 40.000 0.00 0.00 40.65 2.75
2485 3483 7.615039 ATCATTTGGACATCTCAGTAGATCT 57.385 36.000 0.00 0.00 40.65 2.75
2486 3484 8.674263 AAATCATTTGGACATCTCAGTAGATC 57.326 34.615 0.00 0.00 40.65 2.75
2488 3486 9.958180 TTTAAATCATTTGGACATCTCAGTAGA 57.042 29.630 0.00 0.00 35.80 2.59
2502 3500 6.369005 TGCGTGCCAAATTTTAAATCATTTG 58.631 32.000 14.47 14.47 39.25 2.32
2503 3501 6.551385 TGCGTGCCAAATTTTAAATCATTT 57.449 29.167 0.00 0.00 0.00 2.32
2504 3502 5.390779 GCTGCGTGCCAAATTTTAAATCATT 60.391 36.000 0.00 0.00 35.15 2.57
2505 3503 4.093261 GCTGCGTGCCAAATTTTAAATCAT 59.907 37.500 0.00 0.00 35.15 2.45
2506 3504 3.431572 GCTGCGTGCCAAATTTTAAATCA 59.568 39.130 0.00 0.00 35.15 2.57
2507 3505 3.679502 AGCTGCGTGCCAAATTTTAAATC 59.320 39.130 0.00 0.00 44.23 2.17
2508 3506 3.663025 AGCTGCGTGCCAAATTTTAAAT 58.337 36.364 0.00 0.00 44.23 1.40
2509 3507 3.056304 GAGCTGCGTGCCAAATTTTAAA 58.944 40.909 0.00 0.00 44.23 1.52
2510 3508 2.035193 TGAGCTGCGTGCCAAATTTTAA 59.965 40.909 0.00 0.00 44.23 1.52
2511 3509 1.611006 TGAGCTGCGTGCCAAATTTTA 59.389 42.857 0.00 0.00 44.23 1.52
2512 3510 0.388659 TGAGCTGCGTGCCAAATTTT 59.611 45.000 0.00 0.00 44.23 1.82
2513 3511 0.318955 GTGAGCTGCGTGCCAAATTT 60.319 50.000 0.00 0.00 44.23 1.82
2514 3512 1.286880 GTGAGCTGCGTGCCAAATT 59.713 52.632 0.00 0.00 44.23 1.82
2515 3513 2.956987 GTGAGCTGCGTGCCAAAT 59.043 55.556 0.00 0.00 44.23 2.32
2516 3514 3.648982 CGTGAGCTGCGTGCCAAA 61.649 61.111 0.00 0.00 44.23 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.