Multiple sequence alignment - TraesCS7D01G209800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G209800 chr7D 100.000 5175 0 0 1 5175 167589111 167583937 0.000000e+00 9557.0
1 TraesCS7D01G209800 chr7D 83.483 557 40 12 4667 5175 203174049 203174601 6.070000e-129 472.0
2 TraesCS7D01G209800 chr7D 92.405 158 11 1 2406 2562 174342174 174342331 1.880000e-54 224.0
3 TraesCS7D01G209800 chr7A 92.829 2022 59 19 325 2311 169401759 169399789 0.000000e+00 2852.0
4 TraesCS7D01G209800 chr7A 88.307 1642 102 50 2855 4423 169399353 169397729 0.000000e+00 1886.0
5 TraesCS7D01G209800 chr7A 92.746 193 11 1 4476 4665 169388190 169387998 5.100000e-70 276.0
6 TraesCS7D01G209800 chr7A 91.327 196 4 3 2582 2764 169399717 169399522 6.650000e-64 255.0
7 TraesCS7D01G209800 chr7A 100.000 30 0 0 2389 2418 169399745 169399716 7.240000e-04 56.5
8 TraesCS7D01G209800 chr7B 92.323 1980 91 35 2582 4526 132170196 132168243 0.000000e+00 2758.0
9 TraesCS7D01G209800 chr7B 92.887 1884 62 27 527 2385 132172084 132170248 0.000000e+00 2671.0
10 TraesCS7D01G209800 chr7B 98.008 251 5 0 288 538 132172361 132172111 2.210000e-118 436.0
11 TraesCS7D01G209800 chr7B 93.436 259 16 1 33 290 132174198 132173940 2.920000e-102 383.0
12 TraesCS7D01G209800 chr7B 87.209 172 21 1 4666 4836 647996182 647996353 1.470000e-45 195.0
13 TraesCS7D01G209800 chr7B 100.000 30 0 0 2389 2418 132170224 132170195 7.240000e-04 56.5
14 TraesCS7D01G209800 chr3D 86.604 530 40 16 4667 5175 388543118 388542599 1.630000e-154 556.0
15 TraesCS7D01G209800 chr3D 81.044 517 73 23 4667 5174 399666045 399666545 6.280000e-104 388.0
16 TraesCS7D01G209800 chr3D 86.381 257 17 2 4658 4896 388535768 388536024 1.100000e-66 265.0
17 TraesCS7D01G209800 chr3D 84.153 183 19 5 2409 2588 604180674 604180849 8.910000e-38 169.0
18 TraesCS7D01G209800 chr4D 85.765 562 32 13 4662 5175 445348992 445348431 7.570000e-153 551.0
19 TraesCS7D01G209800 chr4D 80.645 527 59 24 4667 5174 301310255 301309753 8.190000e-98 368.0
20 TraesCS7D01G209800 chr4D 93.305 239 11 5 4937 5174 115120685 115120451 1.070000e-91 348.0
21 TraesCS7D01G209800 chr4D 84.706 255 22 2 4667 4904 445341676 445341930 6.700000e-59 239.0
22 TraesCS7D01G209800 chr5D 84.815 540 51 11 4663 5175 351392962 351392427 9.940000e-142 514.0
23 TraesCS7D01G209800 chr5D 80.827 532 59 23 4662 5174 384425625 384426132 1.360000e-100 377.0
24 TraesCS7D01G209800 chr5D 93.836 146 9 0 2417 2562 498927111 498927256 2.430000e-53 220.0
25 TraesCS7D01G209800 chr5D 93.836 146 9 0 2417 2562 501708646 501708791 2.430000e-53 220.0
26 TraesCS7D01G209800 chr5D 91.946 149 12 0 2414 2562 478161188 478161336 5.250000e-50 209.0
27 TraesCS7D01G209800 chr2D 83.848 551 39 15 4667 5175 315481361 315480819 3.620000e-131 479.0
28 TraesCS7D01G209800 chr2D 83.395 542 53 9 4667 5175 6991211 6990674 7.850000e-128 468.0
29 TraesCS7D01G209800 chr2D 93.151 146 10 0 2417 2562 519335068 519335213 1.130000e-51 215.0
30 TraesCS7D01G209800 chr2D 86.047 172 16 4 2417 2587 445733671 445733835 1.480000e-40 178.0
31 TraesCS7D01G209800 chr2D 75.758 198 27 15 61 240 424828601 424828795 4.300000e-11 80.5
32 TraesCS7D01G209800 chr6D 84.647 482 26 13 4740 5175 380132545 380132066 2.210000e-118 436.0
33 TraesCS7D01G209800 chr6D 84.047 257 22 3 4667 4904 380037331 380037587 4.030000e-56 230.0
34 TraesCS7D01G209800 chr3B 82.816 483 36 15 4666 5104 216972717 216973196 6.280000e-104 388.0
35 TraesCS7D01G209800 chr3B 93.724 239 12 3 4937 5175 678006776 678007011 6.370000e-94 355.0
36 TraesCS7D01G209800 chr3B 83.889 180 20 4 2417 2593 67967174 67967347 4.150000e-36 163.0
37 TraesCS7D01G209800 chr2B 80.814 516 78 20 4667 5174 46721854 46721352 8.130000e-103 385.0
38 TraesCS7D01G209800 chr4B 80.566 530 60 23 4665 5175 81111485 81111990 8.190000e-98 368.0
39 TraesCS7D01G209800 chr4B 84.444 180 19 4 2417 2593 212053244 212053417 8.910000e-38 169.0
40 TraesCS7D01G209800 chr4B 83.889 180 20 4 2417 2593 398043848 398043675 4.150000e-36 163.0
41 TraesCS7D01G209800 chr6B 81.202 516 44 23 4705 5175 68418022 68418529 2.940000e-97 366.0
42 TraesCS7D01G209800 chr6B 85.227 88 5 7 61 143 427766248 427766164 3.320000e-12 84.2
43 TraesCS7D01G209800 chr5B 93.361 241 12 4 4934 5174 666882966 666883202 2.290000e-93 353.0
44 TraesCS7D01G209800 chr5B 93.836 146 9 0 2417 2562 625449904 625450049 2.430000e-53 220.0
45 TraesCS7D01G209800 chr5B 93.836 146 9 0 2417 2562 629078026 629078171 2.430000e-53 220.0
46 TraesCS7D01G209800 chr5B 93.836 146 9 0 2417 2562 632808270 632808125 2.430000e-53 220.0
47 TraesCS7D01G209800 chr5B 85.052 194 23 5 4667 4859 34285660 34285472 5.290000e-45 193.0
48 TraesCS7D01G209800 chr5B 83.889 180 20 4 2417 2593 335146362 335146189 4.150000e-36 163.0
49 TraesCS7D01G209800 chr5B 86.111 72 6 4 60 129 686537570 686537501 2.000000e-09 75.0
50 TraesCS7D01G209800 chr1B 80.864 486 46 13 4666 5104 653488163 653488648 6.420000e-89 339.0
51 TraesCS7D01G209800 chr1B 83.684 190 20 6 2408 2593 426613040 426613222 8.910000e-38 169.0
52 TraesCS7D01G209800 chr1B 81.443 97 13 4 60 153 670915628 670915722 2.000000e-09 75.0
53 TraesCS7D01G209800 chr1D 95.238 147 7 0 2416 2562 458883669 458883523 3.120000e-57 233.0
54 TraesCS7D01G209800 chr3A 84.324 185 21 7 2417 2600 63385994 63385817 1.920000e-39 174.0
55 TraesCS7D01G209800 chr3A 75.879 199 25 17 61 240 359075213 359075019 4.300000e-11 80.5
56 TraesCS7D01G209800 chr3A 79.817 109 12 9 61 162 54875034 54875139 2.590000e-08 71.3
57 TraesCS7D01G209800 chr5A 84.571 175 19 6 2415 2587 337050774 337050942 3.210000e-37 167.0
58 TraesCS7D01G209800 chr4A 87.500 72 5 4 60 129 75464380 75464311 4.300000e-11 80.5
59 TraesCS7D01G209800 chr6A 80.702 114 11 10 61 167 522038612 522038503 1.540000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G209800 chr7D 167583937 167589111 5174 True 9557.000 9557 100.00000 1 5175 1 chr7D.!!$R1 5174
1 TraesCS7D01G209800 chr7D 203174049 203174601 552 False 472.000 472 83.48300 4667 5175 1 chr7D.!!$F2 508
2 TraesCS7D01G209800 chr7A 169397729 169401759 4030 True 1262.375 2852 93.11575 325 4423 4 chr7A.!!$R2 4098
3 TraesCS7D01G209800 chr7B 132168243 132174198 5955 True 1260.900 2758 95.33080 33 4526 5 chr7B.!!$R1 4493
4 TraesCS7D01G209800 chr3D 388542599 388543118 519 True 556.000 556 86.60400 4667 5175 1 chr3D.!!$R1 508
5 TraesCS7D01G209800 chr3D 399666045 399666545 500 False 388.000 388 81.04400 4667 5174 1 chr3D.!!$F2 507
6 TraesCS7D01G209800 chr4D 445348431 445348992 561 True 551.000 551 85.76500 4662 5175 1 chr4D.!!$R3 513
7 TraesCS7D01G209800 chr4D 301309753 301310255 502 True 368.000 368 80.64500 4667 5174 1 chr4D.!!$R2 507
8 TraesCS7D01G209800 chr5D 351392427 351392962 535 True 514.000 514 84.81500 4663 5175 1 chr5D.!!$R1 512
9 TraesCS7D01G209800 chr5D 384425625 384426132 507 False 377.000 377 80.82700 4662 5174 1 chr5D.!!$F1 512
10 TraesCS7D01G209800 chr2D 315480819 315481361 542 True 479.000 479 83.84800 4667 5175 1 chr2D.!!$R2 508
11 TraesCS7D01G209800 chr2D 6990674 6991211 537 True 468.000 468 83.39500 4667 5175 1 chr2D.!!$R1 508
12 TraesCS7D01G209800 chr2B 46721352 46721854 502 True 385.000 385 80.81400 4667 5174 1 chr2B.!!$R1 507
13 TraesCS7D01G209800 chr4B 81111485 81111990 505 False 368.000 368 80.56600 4665 5175 1 chr4B.!!$F1 510
14 TraesCS7D01G209800 chr6B 68418022 68418529 507 False 366.000 366 81.20200 4705 5175 1 chr6B.!!$F1 470


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.169009 GCAGACGGTCCTGAATTTGC 59.831 55.0 4.14 2.53 36.29 3.68 F
38 39 0.804989 CAGACGGTCCTGAATTTGCC 59.195 55.0 4.14 0.00 36.29 4.52 F
1374 3013 0.588980 GCGCCGCTCCTTTATTTTCG 60.589 55.0 0.00 0.00 0.00 3.46 F
2312 3988 0.833949 TGGTTGCCACTCACAGTACA 59.166 50.0 0.00 0.00 0.00 2.90 F
2430 4127 0.971386 TGAACTACTCCCACCGTTCC 59.029 55.0 0.00 0.00 35.97 3.62 F
3309 5152 1.067199 CGCTGGTTCGAAAATGCTGC 61.067 55.0 0.00 0.00 0.00 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 2774 1.416401 AGAGAACAAAGGACGAGCCAA 59.584 47.619 0.00 0.00 40.02 4.52 R
1748 3411 2.126149 AGTTCTCGAGCTGCTGCG 60.126 61.111 7.01 10.95 45.42 5.18 R
3130 4965 0.179067 TTGACCACAGACCGGTGTTC 60.179 55.000 14.63 2.28 36.69 3.18 R
3706 5598 0.249868 TCAAGGTGAAGCACAGTCCG 60.250 55.000 0.00 0.00 35.86 4.79 R
3710 5602 0.601046 TCGCTCAAGGTGAAGCACAG 60.601 55.000 0.00 0.00 35.86 3.66 R
4473 6404 0.107897 AGTTGCACAGGTCAACACGA 60.108 50.000 8.33 0.00 44.50 4.35 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.111043 ACCAACCGGTCACTGCAG 59.889 61.111 13.48 13.48 44.71 4.41
18 19 2.669569 CCAACCGGTCACTGCAGG 60.670 66.667 19.93 7.28 0.00 4.85
19 20 3.357079 CAACCGGTCACTGCAGGC 61.357 66.667 19.93 7.65 0.00 4.85
20 21 3.872603 AACCGGTCACTGCAGGCA 61.873 61.111 19.93 0.00 0.00 4.75
22 23 4.007644 CCGGTCACTGCAGGCAGA 62.008 66.667 26.63 10.15 46.30 4.26
23 24 2.740055 CGGTCACTGCAGGCAGAC 60.740 66.667 26.63 20.65 46.30 3.51
24 25 2.740055 GGTCACTGCAGGCAGACG 60.740 66.667 26.63 16.60 46.30 4.18
25 26 2.740055 GTCACTGCAGGCAGACGG 60.740 66.667 26.63 15.14 46.30 4.79
26 27 3.233980 TCACTGCAGGCAGACGGT 61.234 61.111 26.63 3.13 46.30 4.83
27 28 2.740055 CACTGCAGGCAGACGGTC 60.740 66.667 26.63 0.00 46.30 4.79
28 29 4.008933 ACTGCAGGCAGACGGTCC 62.009 66.667 26.63 0.00 46.30 4.46
29 30 3.699894 CTGCAGGCAGACGGTCCT 61.700 66.667 16.02 0.00 46.30 3.85
33 34 4.136978 AGGCAGACGGTCCTGAAT 57.863 55.556 4.14 0.00 36.29 2.57
34 35 2.377136 AGGCAGACGGTCCTGAATT 58.623 52.632 4.14 0.00 36.29 2.17
35 36 0.693049 AGGCAGACGGTCCTGAATTT 59.307 50.000 4.14 0.00 36.29 1.82
36 37 0.804989 GGCAGACGGTCCTGAATTTG 59.195 55.000 4.14 0.00 36.29 2.32
37 38 0.169009 GCAGACGGTCCTGAATTTGC 59.831 55.000 4.14 2.53 36.29 3.68
38 39 0.804989 CAGACGGTCCTGAATTTGCC 59.195 55.000 4.14 0.00 36.29 4.52
43 44 2.280628 CGGTCCTGAATTTGCCTAGTC 58.719 52.381 0.00 0.00 0.00 2.59
257 259 6.750501 ACTAAGTTCGGTTTTTGAAAGAAAGC 59.249 34.615 0.00 0.00 0.00 3.51
277 279 4.240888 AGCTAATGTATATGCGCAGAGTG 58.759 43.478 18.32 0.00 0.00 3.51
404 1987 7.137426 AGAACTGAAGTTACAACAGTACTACG 58.863 38.462 12.76 0.00 42.81 3.51
460 2043 4.715297 ACCTATTATAATCCTGCCCCTACG 59.285 45.833 0.00 0.00 0.00 3.51
565 2189 2.027325 CATCCATGGACGCATGTGG 58.973 57.895 18.99 1.01 0.00 4.17
798 2432 1.021390 CCTTCAATTCTCGCACGGCT 61.021 55.000 0.00 0.00 0.00 5.52
868 2502 1.894881 CATGACACACCATGACCACA 58.105 50.000 0.00 0.00 44.98 4.17
1060 2699 4.373116 ACCCACGCGGCTACAGTG 62.373 66.667 12.47 0.00 35.79 3.66
1363 3002 2.580867 CAGTGAGTAGCGCCGCTC 60.581 66.667 18.06 18.41 40.44 5.03
1374 3013 0.588980 GCGCCGCTCCTTTATTTTCG 60.589 55.000 0.00 0.00 0.00 3.46
1857 3520 3.050275 GACAAGCACCACGCCCTC 61.050 66.667 0.00 0.00 44.04 4.30
1938 3604 4.757657 TCATGTAATGCGGTTTACTGTTGT 59.242 37.500 0.00 0.00 46.21 3.32
1939 3605 5.239744 TCATGTAATGCGGTTTACTGTTGTT 59.760 36.000 0.00 0.00 46.21 2.83
1940 3606 4.849883 TGTAATGCGGTTTACTGTTGTTG 58.150 39.130 5.84 0.00 33.99 3.33
2055 3727 5.541868 AGGAGATGAGAAGGTACCATACATG 59.458 44.000 15.94 0.00 0.00 3.21
2058 3730 5.309020 AGATGAGAAGGTACCATACATGCAT 59.691 40.000 15.94 7.86 0.00 3.96
2066 3738 7.019656 AGGTACCATACATGCATATGAATCA 57.980 36.000 15.94 0.00 37.73 2.57
2069 3741 7.279536 GGTACCATACATGCATATGAATCAGAG 59.720 40.741 7.15 0.00 37.73 3.35
2074 3746 4.202430 ACATGCATATGAATCAGAGGCTCA 60.202 41.667 18.26 0.00 33.47 4.26
2092 3764 7.228906 AGAGGCTCAATGAAATATGATCTTGTG 59.771 37.037 18.26 0.00 0.00 3.33
2093 3765 5.919141 GGCTCAATGAAATATGATCTTGTGC 59.081 40.000 0.00 0.31 34.26 4.57
2240 3912 4.168101 TGATCCCTCCCATTATGTAGTCC 58.832 47.826 0.00 0.00 0.00 3.85
2253 3925 8.405531 CCATTATGTAGTCCGATTCATTTGTTT 58.594 33.333 0.00 0.00 0.00 2.83
2266 3938 7.843204 CGATTCATTTGTTTCTGTCGAATAGAG 59.157 37.037 0.00 0.00 0.00 2.43
2311 3987 1.961793 TTGGTTGCCACTCACAGTAC 58.038 50.000 0.00 0.00 30.78 2.73
2312 3988 0.833949 TGGTTGCCACTCACAGTACA 59.166 50.000 0.00 0.00 0.00 2.90
2313 3989 1.419762 TGGTTGCCACTCACAGTACAT 59.580 47.619 0.00 0.00 0.00 2.29
2314 3990 2.158682 TGGTTGCCACTCACAGTACATT 60.159 45.455 0.00 0.00 0.00 2.71
2315 3991 2.884639 GGTTGCCACTCACAGTACATTT 59.115 45.455 0.00 0.00 0.00 2.32
2316 3992 3.317993 GGTTGCCACTCACAGTACATTTT 59.682 43.478 0.00 0.00 0.00 1.82
2317 3993 4.202111 GGTTGCCACTCACAGTACATTTTT 60.202 41.667 0.00 0.00 0.00 1.94
2318 3994 5.009210 GGTTGCCACTCACAGTACATTTTTA 59.991 40.000 0.00 0.00 0.00 1.52
2319 3995 5.940192 TGCCACTCACAGTACATTTTTAG 57.060 39.130 0.00 0.00 0.00 1.85
2320 3996 4.215399 TGCCACTCACAGTACATTTTTAGC 59.785 41.667 0.00 0.00 0.00 3.09
2321 3997 4.215399 GCCACTCACAGTACATTTTTAGCA 59.785 41.667 0.00 0.00 0.00 3.49
2322 3998 5.617751 GCCACTCACAGTACATTTTTAGCAG 60.618 44.000 0.00 0.00 0.00 4.24
2323 3999 5.700832 CCACTCACAGTACATTTTTAGCAGA 59.299 40.000 0.00 0.00 0.00 4.26
2324 4000 6.372659 CCACTCACAGTACATTTTTAGCAGAT 59.627 38.462 0.00 0.00 0.00 2.90
2325 4001 7.239271 CACTCACAGTACATTTTTAGCAGATG 58.761 38.462 0.00 0.00 0.00 2.90
2336 4012 6.408858 TTTTTAGCAGATGACATCGAACTC 57.591 37.500 9.77 0.00 0.00 3.01
2338 4014 1.474478 AGCAGATGACATCGAACTCGT 59.526 47.619 9.77 0.00 40.80 4.18
2344 4020 4.398358 AGATGACATCGAACTCGTTCCTTA 59.602 41.667 9.77 0.00 40.80 2.69
2386 4062 2.689983 AGGGCTGCTTGTTTATATGCAC 59.310 45.455 0.00 0.00 0.00 4.57
2418 4115 4.448210 TCCTTTTCCGGCATATGAACTAC 58.552 43.478 6.97 0.00 0.00 2.73
2419 4116 4.163458 TCCTTTTCCGGCATATGAACTACT 59.837 41.667 6.97 0.00 0.00 2.57
2420 4117 4.511826 CCTTTTCCGGCATATGAACTACTC 59.488 45.833 6.97 0.00 0.00 2.59
2421 4118 3.746045 TTCCGGCATATGAACTACTCC 57.254 47.619 6.97 0.00 0.00 3.85
2422 4119 1.968493 TCCGGCATATGAACTACTCCC 59.032 52.381 6.97 0.00 0.00 4.30
2423 4120 1.691976 CCGGCATATGAACTACTCCCA 59.308 52.381 6.97 0.00 0.00 4.37
2424 4121 2.548067 CCGGCATATGAACTACTCCCAC 60.548 54.545 6.97 0.00 0.00 4.61
2425 4122 2.548067 CGGCATATGAACTACTCCCACC 60.548 54.545 6.97 0.00 0.00 4.61
2426 4123 2.548067 GGCATATGAACTACTCCCACCG 60.548 54.545 6.97 0.00 0.00 4.94
2427 4124 2.102588 GCATATGAACTACTCCCACCGT 59.897 50.000 6.97 0.00 0.00 4.83
2428 4125 3.431766 GCATATGAACTACTCCCACCGTT 60.432 47.826 6.97 0.00 0.00 4.44
2429 4126 4.369182 CATATGAACTACTCCCACCGTTC 58.631 47.826 0.00 0.00 37.02 3.95
2430 4127 0.971386 TGAACTACTCCCACCGTTCC 59.029 55.000 0.00 0.00 35.97 3.62
2431 4128 1.264295 GAACTACTCCCACCGTTCCT 58.736 55.000 0.00 0.00 31.89 3.36
2432 4129 2.225091 TGAACTACTCCCACCGTTCCTA 60.225 50.000 0.00 0.00 35.97 2.94
2433 4130 2.610438 ACTACTCCCACCGTTCCTAA 57.390 50.000 0.00 0.00 0.00 2.69
2434 4131 2.893424 ACTACTCCCACCGTTCCTAAA 58.107 47.619 0.00 0.00 0.00 1.85
2435 4132 3.447950 ACTACTCCCACCGTTCCTAAAT 58.552 45.455 0.00 0.00 0.00 1.40
2436 4133 2.781681 ACTCCCACCGTTCCTAAATG 57.218 50.000 0.00 0.00 0.00 2.32
2437 4134 1.982958 ACTCCCACCGTTCCTAAATGT 59.017 47.619 0.00 0.00 0.00 2.71
2438 4135 3.175594 ACTCCCACCGTTCCTAAATGTA 58.824 45.455 0.00 0.00 0.00 2.29
2439 4136 3.583966 ACTCCCACCGTTCCTAAATGTAA 59.416 43.478 0.00 0.00 0.00 2.41
2440 4137 4.189231 CTCCCACCGTTCCTAAATGTAAG 58.811 47.826 0.00 0.00 0.00 2.34
2441 4138 3.583966 TCCCACCGTTCCTAAATGTAAGT 59.416 43.478 0.00 0.00 0.00 2.24
2442 4139 3.937079 CCCACCGTTCCTAAATGTAAGTC 59.063 47.826 0.00 0.00 0.00 3.01
2443 4140 4.323257 CCCACCGTTCCTAAATGTAAGTCT 60.323 45.833 0.00 0.00 0.00 3.24
2444 4141 5.243207 CCACCGTTCCTAAATGTAAGTCTT 58.757 41.667 0.00 0.00 0.00 3.01
2445 4142 5.704053 CCACCGTTCCTAAATGTAAGTCTTT 59.296 40.000 0.00 0.00 0.00 2.52
2446 4143 6.348213 CCACCGTTCCTAAATGTAAGTCTTTG 60.348 42.308 0.00 0.00 0.00 2.77
2447 4144 6.425721 CACCGTTCCTAAATGTAAGTCTTTGA 59.574 38.462 0.00 0.00 0.00 2.69
2448 4145 6.426025 ACCGTTCCTAAATGTAAGTCTTTGAC 59.574 38.462 0.00 0.00 0.00 3.18
2449 4146 6.400727 CCGTTCCTAAATGTAAGTCTTTGACG 60.401 42.308 0.00 0.00 37.67 4.35
2450 4147 6.364165 CGTTCCTAAATGTAAGTCTTTGACGA 59.636 38.462 0.00 0.00 37.67 4.20
2451 4148 7.410513 CGTTCCTAAATGTAAGTCTTTGACGAG 60.411 40.741 0.00 0.00 37.67 4.18
2452 4149 7.223260 TCCTAAATGTAAGTCTTTGACGAGA 57.777 36.000 0.00 0.00 37.67 4.04
2453 4150 7.837863 TCCTAAATGTAAGTCTTTGACGAGAT 58.162 34.615 0.00 0.00 37.67 2.75
2454 4151 8.311836 TCCTAAATGTAAGTCTTTGACGAGATT 58.688 33.333 0.00 0.00 37.67 2.40
2455 4152 8.596380 CCTAAATGTAAGTCTTTGACGAGATTC 58.404 37.037 0.00 0.00 37.67 2.52
2456 4153 6.969828 AATGTAAGTCTTTGACGAGATTCC 57.030 37.500 0.00 0.00 37.67 3.01
2457 4154 5.462530 TGTAAGTCTTTGACGAGATTCCA 57.537 39.130 0.00 0.00 37.67 3.53
2458 4155 5.227908 TGTAAGTCTTTGACGAGATTCCAC 58.772 41.667 0.00 0.00 37.67 4.02
2459 4156 4.608948 AAGTCTTTGACGAGATTCCACT 57.391 40.909 0.00 0.00 37.67 4.00
2460 4157 5.723672 AAGTCTTTGACGAGATTCCACTA 57.276 39.130 0.00 0.00 37.67 2.74
2461 4158 5.923733 AGTCTTTGACGAGATTCCACTAT 57.076 39.130 0.00 0.00 37.67 2.12
2462 4159 5.655488 AGTCTTTGACGAGATTCCACTATG 58.345 41.667 0.00 0.00 37.67 2.23
2463 4160 4.806247 GTCTTTGACGAGATTCCACTATGG 59.194 45.833 0.00 0.00 39.43 2.74
2464 4161 4.709886 TCTTTGACGAGATTCCACTATGGA 59.290 41.667 0.00 0.00 46.61 3.41
2465 4162 9.449777 AGTCTTTGACGAGATTCCACTATGGAC 62.450 44.444 0.00 0.00 41.16 4.02
2474 4171 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
2475 4172 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
2476 4173 2.432874 CCACTATGGACCACATACGGAA 59.567 50.000 0.00 0.00 40.96 4.30
2477 4174 3.454375 CACTATGGACCACATACGGAAC 58.546 50.000 0.00 0.00 41.03 3.62
2478 4175 3.101437 ACTATGGACCACATACGGAACA 58.899 45.455 0.00 0.00 41.03 3.18
2479 4176 3.516300 ACTATGGACCACATACGGAACAA 59.484 43.478 0.00 0.00 41.03 2.83
2480 4177 2.932855 TGGACCACATACGGAACAAA 57.067 45.000 0.00 0.00 0.00 2.83
2481 4178 3.210232 TGGACCACATACGGAACAAAA 57.790 42.857 0.00 0.00 0.00 2.44
2482 4179 3.757270 TGGACCACATACGGAACAAAAT 58.243 40.909 0.00 0.00 0.00 1.82
2483 4180 3.504134 TGGACCACATACGGAACAAAATG 59.496 43.478 0.00 0.00 0.00 2.32
2484 4181 3.119637 GGACCACATACGGAACAAAATGG 60.120 47.826 0.00 0.00 0.00 3.16
2485 4182 2.823154 ACCACATACGGAACAAAATGGG 59.177 45.455 0.00 0.00 0.00 4.00
2486 4183 2.165437 CCACATACGGAACAAAATGGGG 59.835 50.000 0.00 0.00 36.61 4.96
2487 4184 2.165437 CACATACGGAACAAAATGGGGG 59.835 50.000 0.00 0.00 0.00 5.40
2488 4185 2.041891 ACATACGGAACAAAATGGGGGA 59.958 45.455 0.00 0.00 0.00 4.81
2489 4186 2.973983 TACGGAACAAAATGGGGGAA 57.026 45.000 0.00 0.00 0.00 3.97
2490 4187 2.319025 ACGGAACAAAATGGGGGAAT 57.681 45.000 0.00 0.00 0.00 3.01
2491 4188 2.176045 ACGGAACAAAATGGGGGAATC 58.824 47.619 0.00 0.00 0.00 2.52
2492 4189 2.225267 ACGGAACAAAATGGGGGAATCT 60.225 45.455 0.00 0.00 0.00 2.40
2493 4190 3.010808 ACGGAACAAAATGGGGGAATCTA 59.989 43.478 0.00 0.00 0.00 1.98
2494 4191 4.215109 CGGAACAAAATGGGGGAATCTAT 58.785 43.478 0.00 0.00 0.00 1.98
2495 4192 5.103855 ACGGAACAAAATGGGGGAATCTATA 60.104 40.000 0.00 0.00 0.00 1.31
2496 4193 5.240844 CGGAACAAAATGGGGGAATCTATAC 59.759 44.000 0.00 0.00 0.00 1.47
2497 4194 6.373759 GGAACAAAATGGGGGAATCTATACT 58.626 40.000 0.00 0.00 0.00 2.12
2498 4195 6.839134 GGAACAAAATGGGGGAATCTATACTT 59.161 38.462 0.00 0.00 0.00 2.24
2499 4196 8.002459 GGAACAAAATGGGGGAATCTATACTTA 58.998 37.037 0.00 0.00 0.00 2.24
2500 4197 9.416284 GAACAAAATGGGGGAATCTATACTTAA 57.584 33.333 0.00 0.00 0.00 1.85
2501 4198 9.777008 AACAAAATGGGGGAATCTATACTTAAA 57.223 29.630 0.00 0.00 0.00 1.52
2502 4199 9.777008 ACAAAATGGGGGAATCTATACTTAAAA 57.223 29.630 0.00 0.00 0.00 1.52
2505 4202 8.422577 AATGGGGGAATCTATACTTAAAATGC 57.577 34.615 0.00 0.00 0.00 3.56
2506 4203 6.916909 TGGGGGAATCTATACTTAAAATGCA 58.083 36.000 0.00 0.00 0.00 3.96
2507 4204 7.534852 TGGGGGAATCTATACTTAAAATGCAT 58.465 34.615 0.00 0.00 0.00 3.96
2508 4205 7.669722 TGGGGGAATCTATACTTAAAATGCATC 59.330 37.037 0.00 0.00 0.00 3.91
2509 4206 7.890655 GGGGGAATCTATACTTAAAATGCATCT 59.109 37.037 0.00 0.00 0.00 2.90
2510 4207 9.959721 GGGGAATCTATACTTAAAATGCATCTA 57.040 33.333 0.00 0.00 0.00 1.98
2521 4218 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
2536 4233 5.139435 ACATCCGTATGTAGTCCATGATG 57.861 43.478 0.00 0.00 44.66 3.07
2537 4234 4.021104 ACATCCGTATGTAGTCCATGATGG 60.021 45.833 4.74 4.74 44.66 3.51
2538 4235 3.839778 TCCGTATGTAGTCCATGATGGA 58.160 45.455 10.75 10.75 45.98 3.41
2539 4236 7.650298 ACATCCGTATGTAGTCCATGATGGAA 61.650 42.308 17.07 0.07 45.76 3.53
2540 4237 8.890893 ACATCCGTATGTAGTCCATGATGGAAT 61.891 40.741 19.04 19.04 45.76 3.01
2553 4250 8.733092 TCCATGATGGAATCTCTATAAAGACT 57.267 34.615 12.63 0.00 45.00 3.24
2554 4251 9.163894 TCCATGATGGAATCTCTATAAAGACTT 57.836 33.333 12.63 0.00 45.00 3.01
2635 4338 9.736414 TTCCCTAAGCATATAGTACTAGTACTG 57.264 37.037 35.52 24.23 45.25 2.74
2775 4484 2.218953 TGCTCATCCCGTTCGTATTC 57.781 50.000 0.00 0.00 0.00 1.75
2779 4488 3.921021 GCTCATCCCGTTCGTATTCATAG 59.079 47.826 0.00 0.00 0.00 2.23
2821 4530 3.942829 TGCGAGGAAAAATCAGAGTCAT 58.057 40.909 0.00 0.00 0.00 3.06
2924 4756 6.259550 AGTCTTGGTTTTGCTATGTTGATC 57.740 37.500 0.00 0.00 0.00 2.92
3004 4839 2.027688 CGAACGTGACGATTTAAGCCTC 59.972 50.000 13.70 0.00 0.00 4.70
3130 4965 3.214697 TCAACGCCAGTATGCATTTTG 57.785 42.857 3.54 3.68 31.97 2.44
3241 5076 3.743396 GCTCAAGCGGAGGTAAATGATAG 59.257 47.826 9.94 0.00 44.22 2.08
3242 5077 4.740934 GCTCAAGCGGAGGTAAATGATAGT 60.741 45.833 9.94 0.00 44.22 2.12
3252 5087 8.033626 CGGAGGTAAATGATAGTACTATTTCCC 58.966 40.741 16.46 9.45 0.00 3.97
3272 5107 4.520874 TCCCGTGCTCACATTTTTATTCAA 59.479 37.500 0.69 0.00 0.00 2.69
3274 5109 5.218885 CCGTGCTCACATTTTTATTCAACA 58.781 37.500 0.69 0.00 0.00 3.33
3309 5152 1.067199 CGCTGGTTCGAAAATGCTGC 61.067 55.000 0.00 0.00 0.00 5.25
3331 5174 1.284657 CACTAGTGATTCTGCAGCCG 58.715 55.000 18.45 0.00 0.00 5.52
3355 5198 6.347321 CGATGCAGTTCTGTAATGTTGTTACA 60.347 38.462 0.00 1.27 38.95 2.41
3370 5216 8.891671 ATGTTGTTACATCTGCTTCAAATTTT 57.108 26.923 0.00 0.00 41.07 1.82
3372 5218 9.243637 TGTTGTTACATCTGCTTCAAATTTTAC 57.756 29.630 0.00 0.00 0.00 2.01
3402 5280 7.444629 TCTCCATCTGAACTGAAGAAAATTG 57.555 36.000 0.00 0.00 0.00 2.32
3692 5570 2.024273 TCGGAGATCCTCAAGGTAGGTT 60.024 50.000 0.00 0.00 37.91 3.50
3699 5591 4.826274 TCCTCAAGGTAGGTTCTTCATG 57.174 45.455 0.00 0.00 37.91 3.07
3706 5598 2.092323 GTAGGTTCTTCATGGCAACCC 58.908 52.381 14.33 1.85 40.56 4.11
3709 5601 0.608035 GTTCTTCATGGCAACCCGGA 60.608 55.000 0.73 0.00 0.00 5.14
3710 5602 0.608035 TTCTTCATGGCAACCCGGAC 60.608 55.000 0.73 0.00 0.00 4.79
3711 5603 1.002134 CTTCATGGCAACCCGGACT 60.002 57.895 0.73 0.00 0.00 3.85
3712 5604 1.303236 TTCATGGCAACCCGGACTG 60.303 57.895 0.73 0.00 0.00 3.51
3713 5605 2.034066 CATGGCAACCCGGACTGT 59.966 61.111 0.73 0.00 0.00 3.55
3714 5606 2.034066 ATGGCAACCCGGACTGTG 59.966 61.111 0.73 0.00 0.00 3.66
3715 5607 4.947147 TGGCAACCCGGACTGTGC 62.947 66.667 0.73 6.54 0.00 4.57
3716 5608 4.643387 GGCAACCCGGACTGTGCT 62.643 66.667 0.73 0.00 0.00 4.40
3717 5609 2.594592 GCAACCCGGACTGTGCTT 60.595 61.111 0.73 0.00 0.00 3.91
3718 5610 2.617274 GCAACCCGGACTGTGCTTC 61.617 63.158 0.73 0.00 0.00 3.86
3738 5630 2.766263 TCACCTTGAGCGACCTTGATAT 59.234 45.455 0.00 0.00 0.00 1.63
3768 5660 4.541973 TGGATAATCTGGGATGATGACG 57.458 45.455 0.00 0.00 0.00 4.35
3769 5661 3.903714 TGGATAATCTGGGATGATGACGT 59.096 43.478 0.00 0.00 0.00 4.34
3771 5663 2.627515 AATCTGGGATGATGACGTGG 57.372 50.000 0.00 0.00 0.00 4.94
4209 6114 2.045926 GATCGGCTGGCTGTTGGT 60.046 61.111 0.00 0.00 0.00 3.67
4210 6115 2.360350 ATCGGCTGGCTGTTGGTG 60.360 61.111 0.00 0.00 0.00 4.17
4211 6116 3.196207 ATCGGCTGGCTGTTGGTGT 62.196 57.895 0.00 0.00 0.00 4.16
4212 6117 2.697147 ATCGGCTGGCTGTTGGTGTT 62.697 55.000 0.00 0.00 0.00 3.32
4213 6118 2.730094 GGCTGGCTGTTGGTGTTG 59.270 61.111 0.00 0.00 0.00 3.33
4214 6119 2.730094 GCTGGCTGTTGGTGTTGG 59.270 61.111 0.00 0.00 0.00 3.77
4266 6174 2.019984 AGCTGCGAATTGGATTCTTCC 58.980 47.619 0.00 0.00 42.94 3.46
4305 6213 9.330063 ACGTACAACTAGCTAGTATATGTAACA 57.670 33.333 26.99 13.32 34.99 2.41
4306 6214 9.591404 CGTACAACTAGCTAGTATATGTAACAC 57.409 37.037 26.99 20.16 34.99 3.32
4309 6217 5.924786 ACTAGCTAGTATATGTAACACGCG 58.075 41.667 24.97 3.53 34.13 6.01
4310 6218 5.698089 ACTAGCTAGTATATGTAACACGCGA 59.302 40.000 24.97 0.00 34.13 5.87
4311 6219 4.781071 AGCTAGTATATGTAACACGCGAC 58.219 43.478 15.93 0.00 0.00 5.19
4312 6220 3.596982 GCTAGTATATGTAACACGCGACG 59.403 47.826 15.93 5.81 0.00 5.12
4314 6222 4.019919 AGTATATGTAACACGCGACGTT 57.980 40.909 15.93 18.17 38.32 3.99
4315 6223 3.787634 AGTATATGTAACACGCGACGTTG 59.212 43.478 15.93 2.09 38.32 4.10
4340 6257 1.590259 GCTGCTGCCGAGTAGTAGC 60.590 63.158 13.51 13.51 44.36 3.58
4351 6271 2.286301 CGAGTAGTAGCGGACAACTAGC 60.286 54.545 0.00 0.00 0.00 3.42
4360 6280 1.630148 GGACAACTAGCAGTGTAGCG 58.370 55.000 0.00 0.00 40.15 4.26
4362 6282 1.201647 GACAACTAGCAGTGTAGCGGA 59.798 52.381 0.00 0.00 40.15 5.54
4364 6284 2.233922 ACAACTAGCAGTGTAGCGGAAT 59.766 45.455 0.00 0.00 40.15 3.01
4365 6285 2.586258 ACTAGCAGTGTAGCGGAATG 57.414 50.000 0.00 0.00 40.15 2.67
4366 6286 1.825474 ACTAGCAGTGTAGCGGAATGT 59.175 47.619 0.00 0.00 40.15 2.71
4401 6330 2.363795 TCCGGCCGGAGTCTTGAT 60.364 61.111 42.66 0.00 39.76 2.57
4402 6331 1.987855 TCCGGCCGGAGTCTTGATT 60.988 57.895 42.66 0.00 39.76 2.57
4418 6349 1.069513 TGATTGGAAAGACGTCGGTGT 59.930 47.619 10.46 0.00 0.00 4.16
4432 6363 3.304525 CGTCGGTGTAGAAAGAACACTCT 60.305 47.826 6.35 0.00 45.26 3.24
4434 6365 2.731976 CGGTGTAGAAAGAACACTCTGC 59.268 50.000 6.35 0.00 45.26 4.26
4438 6369 4.449405 GTGTAGAAAGAACACTCTGCTTCC 59.551 45.833 0.00 0.00 43.13 3.46
4448 6379 2.093973 CACTCTGCTTCCAATCTACGGT 60.094 50.000 0.00 0.00 0.00 4.83
4449 6380 2.166664 ACTCTGCTTCCAATCTACGGTC 59.833 50.000 0.00 0.00 0.00 4.79
4456 6387 0.811616 CCAATCTACGGTCTGCAGCC 60.812 60.000 9.47 12.85 0.00 4.85
4465 6396 3.092511 TCTGCAGCCCCCTGGATC 61.093 66.667 9.47 0.00 38.81 3.36
4466 6397 4.559063 CTGCAGCCCCCTGGATCG 62.559 72.222 0.00 0.00 38.81 3.69
4474 6405 4.247380 CCCTGGATCGGGCTGCTC 62.247 72.222 0.00 0.00 37.41 4.26
4487 6418 1.835483 GCTGCTCGTGTTGACCTGTG 61.835 60.000 0.00 0.00 0.00 3.66
4492 6423 0.107897 TCGTGTTGACCTGTGCAACT 60.108 50.000 0.00 0.00 44.43 3.16
4501 6432 5.146010 TGACCTGTGCAACTTTTTCTTTT 57.854 34.783 0.00 0.00 38.04 2.27
4526 6457 3.648357 CCGCACGTACGTAATGTTTTAC 58.352 45.455 22.34 1.55 35.38 2.01
4527 6458 3.481789 CCGCACGTACGTAATGTTTTACC 60.482 47.826 22.34 0.00 35.30 2.85
4528 6459 3.364621 CGCACGTACGTAATGTTTTACCT 59.635 43.478 22.34 0.00 35.30 3.08
4529 6460 4.631036 GCACGTACGTAATGTTTTACCTG 58.369 43.478 22.34 4.93 35.30 4.00
4530 6461 4.150451 GCACGTACGTAATGTTTTACCTGT 59.850 41.667 22.34 0.00 35.30 4.00
4531 6462 5.601582 CACGTACGTAATGTTTTACCTGTG 58.398 41.667 22.34 0.00 35.30 3.66
4532 6463 4.685628 ACGTACGTAATGTTTTACCTGTGG 59.314 41.667 21.41 0.00 35.30 4.17
4533 6464 4.685628 CGTACGTAATGTTTTACCTGTGGT 59.314 41.667 7.22 0.00 40.16 4.16
4534 6465 5.388682 CGTACGTAATGTTTTACCTGTGGTG 60.389 44.000 7.22 0.00 36.19 4.17
4535 6466 3.816523 ACGTAATGTTTTACCTGTGGTGG 59.183 43.478 0.00 0.00 36.19 4.61
4536 6467 3.816523 CGTAATGTTTTACCTGTGGTGGT 59.183 43.478 0.00 0.00 43.66 4.16
4537 6468 4.319911 CGTAATGTTTTACCTGTGGTGGTG 60.320 45.833 0.00 0.00 41.05 4.17
4538 6469 2.810870 TGTTTTACCTGTGGTGGTGT 57.189 45.000 0.00 0.00 41.05 4.16
4539 6470 3.088789 TGTTTTACCTGTGGTGGTGTT 57.911 42.857 0.00 0.00 41.05 3.32
4540 6471 3.018149 TGTTTTACCTGTGGTGGTGTTC 58.982 45.455 0.00 0.00 41.05 3.18
4541 6472 3.018149 GTTTTACCTGTGGTGGTGTTCA 58.982 45.455 0.00 0.00 41.05 3.18
4542 6473 2.631160 TTACCTGTGGTGGTGTTCAG 57.369 50.000 0.00 0.00 41.05 3.02
4543 6474 0.107831 TACCTGTGGTGGTGTTCAGC 59.892 55.000 0.00 0.00 41.05 4.26
4544 6475 1.149174 CCTGTGGTGGTGTTCAGCT 59.851 57.895 3.76 0.00 43.76 4.24
4545 6476 0.886490 CCTGTGGTGGTGTTCAGCTC 60.886 60.000 3.76 0.18 43.76 4.09
4546 6477 1.224069 CTGTGGTGGTGTTCAGCTCG 61.224 60.000 3.76 0.00 43.76 5.03
4547 6478 1.227556 GTGGTGGTGTTCAGCTCGT 60.228 57.895 3.76 0.00 43.76 4.18
4548 6479 1.069090 TGGTGGTGTTCAGCTCGTC 59.931 57.895 3.76 0.00 43.76 4.20
4549 6480 2.022129 GGTGGTGTTCAGCTCGTCG 61.022 63.158 3.76 0.00 40.48 5.12
4550 6481 2.022129 GTGGTGTTCAGCTCGTCGG 61.022 63.158 3.76 0.00 0.00 4.79
4551 6482 3.112709 GGTGTTCAGCTCGTCGGC 61.113 66.667 0.00 0.00 0.00 5.54
4552 6483 2.049063 GTGTTCAGCTCGTCGGCT 60.049 61.111 2.81 2.81 44.10 5.52
4553 6484 1.664965 GTGTTCAGCTCGTCGGCTT 60.665 57.895 5.60 0.00 41.00 4.35
4554 6485 1.372997 TGTTCAGCTCGTCGGCTTC 60.373 57.895 5.60 2.05 41.00 3.86
4555 6486 1.080434 GTTCAGCTCGTCGGCTTCT 60.080 57.895 5.60 0.00 41.00 2.85
4556 6487 1.073768 GTTCAGCTCGTCGGCTTCTC 61.074 60.000 5.60 0.00 41.00 2.87
4557 6488 2.529005 TTCAGCTCGTCGGCTTCTCG 62.529 60.000 5.60 0.00 41.00 4.04
4558 6489 3.816524 AGCTCGTCGGCTTCTCGG 61.817 66.667 2.81 0.00 39.86 4.63
4586 6517 2.734591 CATGCATGCAGGCCATCC 59.265 61.111 26.69 0.00 29.71 3.51
4587 6518 2.131067 CATGCATGCAGGCCATCCA 61.131 57.895 26.69 0.99 33.74 3.41
4588 6519 1.832608 ATGCATGCAGGCCATCCAG 60.833 57.895 26.69 0.00 33.74 3.86
4589 6520 3.912907 GCATGCAGGCCATCCAGC 61.913 66.667 13.44 0.00 44.31 4.85
4590 6521 3.592814 CATGCAGGCCATCCAGCG 61.593 66.667 5.01 0.00 46.71 5.18
4593 6524 4.552365 GCAGGCCATCCAGCGCTA 62.552 66.667 10.99 0.00 35.12 4.26
4594 6525 2.429058 CAGGCCATCCAGCGCTAT 59.571 61.111 10.99 0.00 33.74 2.97
4595 6526 1.964891 CAGGCCATCCAGCGCTATG 60.965 63.158 10.99 11.85 33.74 2.23
4596 6527 3.360340 GGCCATCCAGCGCTATGC 61.360 66.667 10.99 8.47 46.98 3.14
4623 6554 4.251246 GCCACCGGCCATGATAAA 57.749 55.556 0.00 0.00 44.06 1.40
4624 6555 1.733526 GCCACCGGCCATGATAAAC 59.266 57.895 0.00 0.00 44.06 2.01
4625 6556 0.751643 GCCACCGGCCATGATAAACT 60.752 55.000 0.00 0.00 44.06 2.66
4626 6557 1.308998 CCACCGGCCATGATAAACTC 58.691 55.000 0.00 0.00 0.00 3.01
4627 6558 0.937304 CACCGGCCATGATAAACTCG 59.063 55.000 0.00 0.00 0.00 4.18
4628 6559 0.539986 ACCGGCCATGATAAACTCGT 59.460 50.000 0.00 0.00 0.00 4.18
4629 6560 1.217882 CCGGCCATGATAAACTCGTC 58.782 55.000 2.24 0.00 0.00 4.20
4630 6561 0.852777 CGGCCATGATAAACTCGTCG 59.147 55.000 2.24 0.00 0.00 5.12
4631 6562 1.801395 CGGCCATGATAAACTCGTCGT 60.801 52.381 2.24 0.00 0.00 4.34
4632 6563 1.859080 GGCCATGATAAACTCGTCGTC 59.141 52.381 0.00 0.00 0.00 4.20
4633 6564 1.517276 GCCATGATAAACTCGTCGTCG 59.483 52.381 0.00 0.00 38.55 5.12
4634 6565 2.793933 CCATGATAAACTCGTCGTCGT 58.206 47.619 1.33 0.00 38.33 4.34
4635 6566 3.176708 CCATGATAAACTCGTCGTCGTT 58.823 45.455 1.33 0.00 38.33 3.85
4636 6567 3.239941 CCATGATAAACTCGTCGTCGTTC 59.760 47.826 1.33 0.00 38.33 3.95
4637 6568 2.855180 TGATAAACTCGTCGTCGTTCC 58.145 47.619 1.33 0.00 38.33 3.62
4638 6569 2.485426 TGATAAACTCGTCGTCGTTCCT 59.515 45.455 1.33 0.00 38.33 3.36
4639 6570 2.320805 TAAACTCGTCGTCGTTCCTG 57.679 50.000 1.33 0.00 38.33 3.86
4640 6571 0.318445 AAACTCGTCGTCGTTCCTGG 60.318 55.000 1.33 0.00 38.33 4.45
4641 6572 2.504244 CTCGTCGTCGTTCCTGGC 60.504 66.667 1.33 0.00 38.33 4.85
4642 6573 3.966026 CTCGTCGTCGTTCCTGGCC 62.966 68.421 0.00 0.00 38.33 5.36
4644 6575 4.047059 GTCGTCGTTCCTGGCCGA 62.047 66.667 0.00 4.50 0.00 5.54
4647 6578 4.047059 GTCGTTCCTGGCCGACGA 62.047 66.667 18.34 16.25 43.22 4.20
4648 6579 3.066190 TCGTTCCTGGCCGACGAT 61.066 61.111 16.25 0.00 40.46 3.73
4649 6580 2.885644 CGTTCCTGGCCGACGATG 60.886 66.667 13.42 0.00 38.99 3.84
4650 6581 2.511600 GTTCCTGGCCGACGATGG 60.512 66.667 0.00 0.00 0.00 3.51
4725 6656 6.760440 AATCATGATCTGACCTGGTCTTAT 57.240 37.500 26.03 18.68 36.48 1.73
4759 6690 1.674359 ACAGATCGTTTTGTGTGGCA 58.326 45.000 0.00 0.00 0.00 4.92
4761 6692 1.603802 CAGATCGTTTTGTGTGGCACT 59.396 47.619 19.83 0.00 35.11 4.40
4887 6836 0.452618 CGCCACACTTGTAATGTGCG 60.453 55.000 0.00 4.11 45.01 5.34
4930 6879 1.585267 CTTGTAATGTGCAGCGCCCA 61.585 55.000 2.29 0.00 0.00 5.36
4980 6957 2.874245 TCTCTCCCCTCCCACCCA 60.874 66.667 0.00 0.00 0.00 4.51
4983 6960 3.330720 CTCCCCTCCCACCCACAC 61.331 72.222 0.00 0.00 0.00 3.82
4984 6961 4.194497 TCCCCTCCCACCCACACA 62.194 66.667 0.00 0.00 0.00 3.72
4985 6962 3.966543 CCCCTCCCACCCACACAC 61.967 72.222 0.00 0.00 0.00 3.82
5040 7050 1.236708 CTTCCCCTCTCCCTCCTCTA 58.763 60.000 0.00 0.00 0.00 2.43
5046 7056 3.375878 CCCCTCTCCCTCCTCTAAAATCT 60.376 52.174 0.00 0.00 0.00 2.40
5068 7079 7.053316 TCTTTCTCAAATCTTGCAAATCCAA 57.947 32.000 0.00 0.00 0.00 3.53
5100 7111 0.404040 TGGATTTCGAAGCCAACCCT 59.596 50.000 16.61 0.00 45.40 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.357079 GCCTGCAGTGACCGGTTG 61.357 66.667 9.42 4.01 0.00 3.77
4 5 4.320456 CTGCCTGCAGTGACCGGT 62.320 66.667 6.92 6.92 39.10 5.28
6 7 2.740055 GTCTGCCTGCAGTGACCG 60.740 66.667 17.96 0.00 43.96 4.79
7 8 2.740055 CGTCTGCCTGCAGTGACC 60.740 66.667 17.96 5.24 43.96 4.02
8 9 2.740055 CCGTCTGCCTGCAGTGAC 60.740 66.667 17.96 15.66 43.96 3.67
9 10 3.226429 GACCGTCTGCCTGCAGTGA 62.226 63.158 17.96 5.10 43.96 3.41
10 11 2.740055 GACCGTCTGCCTGCAGTG 60.740 66.667 17.96 11.91 43.96 3.66
11 12 4.008933 GGACCGTCTGCCTGCAGT 62.009 66.667 17.96 0.20 43.96 4.40
12 13 3.699894 AGGACCGTCTGCCTGCAG 61.700 66.667 12.91 12.91 44.86 4.41
13 14 4.007644 CAGGACCGTCTGCCTGCA 62.008 66.667 0.00 0.00 44.53 4.41
16 17 0.693049 AAATTCAGGACCGTCTGCCT 59.307 50.000 0.00 0.00 34.91 4.75
17 18 0.804989 CAAATTCAGGACCGTCTGCC 59.195 55.000 0.00 0.00 34.91 4.85
18 19 0.169009 GCAAATTCAGGACCGTCTGC 59.831 55.000 0.00 0.00 34.91 4.26
19 20 0.804989 GGCAAATTCAGGACCGTCTG 59.195 55.000 0.00 0.00 36.17 3.51
20 21 0.693049 AGGCAAATTCAGGACCGTCT 59.307 50.000 0.00 0.00 0.00 4.18
21 22 2.280628 CTAGGCAAATTCAGGACCGTC 58.719 52.381 0.00 0.00 0.00 4.79
22 23 1.628846 ACTAGGCAAATTCAGGACCGT 59.371 47.619 0.00 0.00 0.00 4.83
23 24 2.093447 AGACTAGGCAAATTCAGGACCG 60.093 50.000 0.00 0.00 0.00 4.79
24 25 3.055094 TCAGACTAGGCAAATTCAGGACC 60.055 47.826 0.00 0.00 0.00 4.46
25 26 3.935828 GTCAGACTAGGCAAATTCAGGAC 59.064 47.826 0.00 0.00 0.00 3.85
26 27 3.840666 AGTCAGACTAGGCAAATTCAGGA 59.159 43.478 0.00 0.00 0.00 3.86
27 28 3.937706 CAGTCAGACTAGGCAAATTCAGG 59.062 47.826 1.67 0.00 0.00 3.86
28 29 4.573900 ACAGTCAGACTAGGCAAATTCAG 58.426 43.478 1.67 0.00 0.00 3.02
29 30 4.623932 ACAGTCAGACTAGGCAAATTCA 57.376 40.909 1.67 0.00 0.00 2.57
30 31 5.967088 TCTACAGTCAGACTAGGCAAATTC 58.033 41.667 1.67 0.00 0.00 2.17
31 32 6.344500 CATCTACAGTCAGACTAGGCAAATT 58.656 40.000 1.67 0.00 0.00 1.82
32 33 5.683509 GCATCTACAGTCAGACTAGGCAAAT 60.684 44.000 1.67 0.00 0.00 2.32
33 34 4.382040 GCATCTACAGTCAGACTAGGCAAA 60.382 45.833 1.67 0.00 0.00 3.68
34 35 3.131223 GCATCTACAGTCAGACTAGGCAA 59.869 47.826 1.67 0.00 0.00 4.52
35 36 2.690497 GCATCTACAGTCAGACTAGGCA 59.310 50.000 1.67 0.00 0.00 4.75
36 37 2.955660 AGCATCTACAGTCAGACTAGGC 59.044 50.000 1.67 0.85 0.00 3.93
37 38 4.829064 GAGCATCTACAGTCAGACTAGG 57.171 50.000 1.67 0.00 0.00 3.02
103 104 9.617975 GAGTTTCCTCTGTAAATTTGATCAAAG 57.382 33.333 24.17 11.02 34.69 2.77
257 259 4.574527 GCACTCTGCGCATATACATTAG 57.425 45.455 12.24 0.00 31.71 1.73
277 279 2.285428 GGTTAGCTGTAATGTAACGCGC 60.285 50.000 5.73 0.00 0.00 6.86
798 2432 1.607612 GAGGAGGCGGGATTGGAAA 59.392 57.895 0.00 0.00 0.00 3.13
831 2465 2.842208 TGCGCATTGCCACTTATAAC 57.158 45.000 5.66 0.00 45.60 1.89
1065 2704 1.776034 GACATGGGCGATCGCTTTCC 61.776 60.000 36.25 28.84 41.60 3.13
1135 2774 1.416401 AGAGAACAAAGGACGAGCCAA 59.584 47.619 0.00 0.00 40.02 4.52
1363 3002 4.380128 CCCCTTTCCGAACGAAAATAAAGG 60.380 45.833 12.99 12.99 39.98 3.11
1409 3048 3.440522 GCAGGGTGAATAGTTCTTGGAAC 59.559 47.826 2.57 2.57 0.00 3.62
1748 3411 2.126149 AGTTCTCGAGCTGCTGCG 60.126 61.111 7.01 10.95 45.42 5.18
1938 3604 2.203280 CCACCGCCCTGTCAACAA 60.203 61.111 0.00 0.00 0.00 2.83
1939 3605 3.484806 ACCACCGCCCTGTCAACA 61.485 61.111 0.00 0.00 0.00 3.33
1940 3606 2.978010 CACCACCGCCCTGTCAAC 60.978 66.667 0.00 0.00 0.00 3.18
2012 3678 3.055819 TCCTGTTCTTTCAGAGGAATCGG 60.056 47.826 0.00 0.00 37.61 4.18
2055 3727 5.001874 TCATTGAGCCTCTGATTCATATGC 58.998 41.667 0.00 0.00 0.00 3.14
2058 3730 9.227777 CATATTTCATTGAGCCTCTGATTCATA 57.772 33.333 0.00 0.00 0.00 2.15
2066 3738 7.228906 CACAAGATCATATTTCATTGAGCCTCT 59.771 37.037 0.00 0.00 0.00 3.69
2069 3741 5.919141 GCACAAGATCATATTTCATTGAGCC 59.081 40.000 0.00 0.00 31.06 4.70
2074 3746 6.260714 TGCTACGCACAAGATCATATTTCATT 59.739 34.615 0.00 0.00 31.71 2.57
2100 3772 8.385111 CGTAAGAAATACAACCACATTATCGTT 58.615 33.333 0.00 0.00 43.02 3.85
2101 3773 7.546667 ACGTAAGAAATACAACCACATTATCGT 59.453 33.333 0.00 0.00 43.62 3.73
2102 3774 7.902032 ACGTAAGAAATACAACCACATTATCG 58.098 34.615 0.00 0.00 43.62 2.92
2105 3777 9.872721 TCATACGTAAGAAATACAACCACATTA 57.127 29.630 0.00 0.00 43.62 1.90
2240 3912 7.675478 TCTATTCGACAGAAACAAATGAATCG 58.325 34.615 0.00 0.00 40.15 3.34
2253 3925 1.063616 CGCCGTTCTCTATTCGACAGA 59.936 52.381 0.00 0.00 0.00 3.41
2266 3938 2.746277 ATCACTTGGCCGCCGTTC 60.746 61.111 4.58 0.00 0.00 3.95
2311 3987 6.779117 AGTTCGATGTCATCTGCTAAAAATG 58.221 36.000 11.04 0.00 0.00 2.32
2312 3988 6.237942 CGAGTTCGATGTCATCTGCTAAAAAT 60.238 38.462 11.04 0.00 43.02 1.82
2313 3989 5.062183 CGAGTTCGATGTCATCTGCTAAAAA 59.938 40.000 11.04 0.00 43.02 1.94
2314 3990 4.562789 CGAGTTCGATGTCATCTGCTAAAA 59.437 41.667 11.04 0.00 43.02 1.52
2315 3991 4.105486 CGAGTTCGATGTCATCTGCTAAA 58.895 43.478 11.04 0.00 43.02 1.85
2316 3992 3.128764 ACGAGTTCGATGTCATCTGCTAA 59.871 43.478 11.04 0.00 43.02 3.09
2317 3993 2.683362 ACGAGTTCGATGTCATCTGCTA 59.317 45.455 11.04 0.00 43.02 3.49
2318 3994 1.474478 ACGAGTTCGATGTCATCTGCT 59.526 47.619 11.04 5.93 43.02 4.24
2319 3995 1.914634 ACGAGTTCGATGTCATCTGC 58.085 50.000 11.04 1.44 43.02 4.26
2320 3996 2.854777 GGAACGAGTTCGATGTCATCTG 59.145 50.000 11.04 5.04 43.02 2.90
2321 3997 2.755655 AGGAACGAGTTCGATGTCATCT 59.244 45.455 11.04 0.00 43.02 2.90
2322 3998 3.152261 AGGAACGAGTTCGATGTCATC 57.848 47.619 8.72 2.43 43.02 2.92
2323 3999 3.594603 AAGGAACGAGTTCGATGTCAT 57.405 42.857 8.72 0.00 43.02 3.06
2324 4000 3.829948 GTAAGGAACGAGTTCGATGTCA 58.170 45.455 8.72 0.00 43.02 3.58
2336 4012 2.931753 TGGTACAATGGCGTAAGGAACG 60.932 50.000 0.00 0.00 46.58 3.95
2386 4062 2.799978 GCCGGAAAAGGAAAACACATTG 59.200 45.455 5.05 0.00 0.00 2.82
2418 4115 2.781681 ACATTTAGGAACGGTGGGAG 57.218 50.000 0.00 0.00 0.00 4.30
2419 4116 3.583966 ACTTACATTTAGGAACGGTGGGA 59.416 43.478 0.00 0.00 0.00 4.37
2420 4117 3.937079 GACTTACATTTAGGAACGGTGGG 59.063 47.826 0.00 0.00 0.00 4.61
2421 4118 4.828829 AGACTTACATTTAGGAACGGTGG 58.171 43.478 0.00 0.00 0.00 4.61
2422 4119 6.425721 TCAAAGACTTACATTTAGGAACGGTG 59.574 38.462 0.00 0.00 0.00 4.94
2423 4120 6.426025 GTCAAAGACTTACATTTAGGAACGGT 59.574 38.462 0.00 0.00 0.00 4.83
2424 4121 6.400727 CGTCAAAGACTTACATTTAGGAACGG 60.401 42.308 0.00 0.00 0.00 4.44
2425 4122 6.364165 TCGTCAAAGACTTACATTTAGGAACG 59.636 38.462 0.00 0.00 0.00 3.95
2426 4123 7.597743 TCTCGTCAAAGACTTACATTTAGGAAC 59.402 37.037 0.00 0.00 0.00 3.62
2427 4124 7.663827 TCTCGTCAAAGACTTACATTTAGGAA 58.336 34.615 0.00 0.00 0.00 3.36
2428 4125 7.223260 TCTCGTCAAAGACTTACATTTAGGA 57.777 36.000 0.00 0.00 0.00 2.94
2429 4126 8.480643 AATCTCGTCAAAGACTTACATTTAGG 57.519 34.615 0.00 0.00 0.00 2.69
2430 4127 8.596380 GGAATCTCGTCAAAGACTTACATTTAG 58.404 37.037 0.00 0.00 0.00 1.85
2431 4128 8.092068 TGGAATCTCGTCAAAGACTTACATTTA 58.908 33.333 0.00 0.00 0.00 1.40
2432 4129 6.934645 TGGAATCTCGTCAAAGACTTACATTT 59.065 34.615 0.00 0.00 0.00 2.32
2433 4130 6.369065 GTGGAATCTCGTCAAAGACTTACATT 59.631 38.462 0.00 0.00 0.00 2.71
2434 4131 5.869888 GTGGAATCTCGTCAAAGACTTACAT 59.130 40.000 0.00 0.00 0.00 2.29
2435 4132 5.010719 AGTGGAATCTCGTCAAAGACTTACA 59.989 40.000 0.00 0.00 0.00 2.41
2436 4133 5.471257 AGTGGAATCTCGTCAAAGACTTAC 58.529 41.667 0.00 0.00 0.00 2.34
2437 4134 5.723672 AGTGGAATCTCGTCAAAGACTTA 57.276 39.130 0.00 0.00 0.00 2.24
2438 4135 4.608948 AGTGGAATCTCGTCAAAGACTT 57.391 40.909 0.00 0.00 0.00 3.01
2439 4136 5.394663 CCATAGTGGAATCTCGTCAAAGACT 60.395 44.000 0.00 0.00 40.96 3.24
2440 4137 4.806247 CCATAGTGGAATCTCGTCAAAGAC 59.194 45.833 0.00 0.00 40.96 3.01
2441 4138 4.709886 TCCATAGTGGAATCTCGTCAAAGA 59.290 41.667 0.00 0.00 45.00 2.52
2442 4139 5.011090 TCCATAGTGGAATCTCGTCAAAG 57.989 43.478 0.00 0.00 45.00 2.77
2454 4151 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
2455 4152 2.036387 TCCGTATGTGGTCCATAGTGG 58.964 52.381 0.00 0.00 36.71 4.00
2456 4153 3.118920 TGTTCCGTATGTGGTCCATAGTG 60.119 47.826 0.00 0.00 36.71 2.74
2457 4154 3.101437 TGTTCCGTATGTGGTCCATAGT 58.899 45.455 0.00 0.00 36.71 2.12
2458 4155 3.812156 TGTTCCGTATGTGGTCCATAG 57.188 47.619 0.00 0.00 36.71 2.23
2459 4156 4.554960 TTTGTTCCGTATGTGGTCCATA 57.445 40.909 0.00 0.00 34.86 2.74
2460 4157 3.426787 TTTGTTCCGTATGTGGTCCAT 57.573 42.857 0.00 0.00 37.58 3.41
2461 4158 2.932855 TTTGTTCCGTATGTGGTCCA 57.067 45.000 0.00 0.00 0.00 4.02
2462 4159 3.119637 CCATTTTGTTCCGTATGTGGTCC 60.120 47.826 0.00 0.00 0.00 4.46
2463 4160 3.119637 CCCATTTTGTTCCGTATGTGGTC 60.120 47.826 0.00 0.00 0.00 4.02
2464 4161 2.823154 CCCATTTTGTTCCGTATGTGGT 59.177 45.455 0.00 0.00 0.00 4.16
2465 4162 2.165437 CCCCATTTTGTTCCGTATGTGG 59.835 50.000 0.00 0.00 0.00 4.17
2466 4163 2.165437 CCCCCATTTTGTTCCGTATGTG 59.835 50.000 0.00 0.00 0.00 3.21
2467 4164 2.041891 TCCCCCATTTTGTTCCGTATGT 59.958 45.455 0.00 0.00 0.00 2.29
2468 4165 2.729194 TCCCCCATTTTGTTCCGTATG 58.271 47.619 0.00 0.00 0.00 2.39
2469 4166 3.459710 TTCCCCCATTTTGTTCCGTAT 57.540 42.857 0.00 0.00 0.00 3.06
2470 4167 2.973983 TTCCCCCATTTTGTTCCGTA 57.026 45.000 0.00 0.00 0.00 4.02
2471 4168 2.176045 GATTCCCCCATTTTGTTCCGT 58.824 47.619 0.00 0.00 0.00 4.69
2472 4169 2.456577 AGATTCCCCCATTTTGTTCCG 58.543 47.619 0.00 0.00 0.00 4.30
2473 4170 6.373759 AGTATAGATTCCCCCATTTTGTTCC 58.626 40.000 0.00 0.00 0.00 3.62
2474 4171 7.898014 AAGTATAGATTCCCCCATTTTGTTC 57.102 36.000 0.00 0.00 0.00 3.18
2475 4172 9.777008 TTTAAGTATAGATTCCCCCATTTTGTT 57.223 29.630 0.00 0.00 0.00 2.83
2476 4173 9.777008 TTTTAAGTATAGATTCCCCCATTTTGT 57.223 29.630 0.00 0.00 0.00 2.83
2479 4176 8.870116 GCATTTTAAGTATAGATTCCCCCATTT 58.130 33.333 0.00 0.00 0.00 2.32
2480 4177 8.010105 TGCATTTTAAGTATAGATTCCCCCATT 58.990 33.333 0.00 0.00 0.00 3.16
2481 4178 7.534852 TGCATTTTAAGTATAGATTCCCCCAT 58.465 34.615 0.00 0.00 0.00 4.00
2482 4179 6.916909 TGCATTTTAAGTATAGATTCCCCCA 58.083 36.000 0.00 0.00 0.00 4.96
2483 4180 7.890655 AGATGCATTTTAAGTATAGATTCCCCC 59.109 37.037 0.00 0.00 0.00 5.40
2484 4181 8.870075 AGATGCATTTTAAGTATAGATTCCCC 57.130 34.615 0.00 0.00 0.00 4.81
2495 4192 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
2499 4196 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2502 4199 9.355916 ACTACATACGGATGTATATAGATGCAT 57.644 33.333 20.64 0.00 45.42 3.96
2503 4200 8.747538 ACTACATACGGATGTATATAGATGCA 57.252 34.615 20.64 0.00 45.42 3.96
2504 4201 8.291032 GGACTACATACGGATGTATATAGATGC 58.709 40.741 20.64 6.50 45.42 3.91
2505 4202 9.338622 TGGACTACATACGGATGTATATAGATG 57.661 37.037 20.64 9.79 45.42 2.90
2507 4204 9.338622 CATGGACTACATACGGATGTATATAGA 57.661 37.037 20.64 5.22 45.42 1.98
2508 4205 9.338622 TCATGGACTACATACGGATGTATATAG 57.661 37.037 20.64 13.28 45.42 1.31
2509 4206 9.862149 ATCATGGACTACATACGGATGTATATA 57.138 33.333 20.64 8.47 45.42 0.86
2510 4207 8.633561 CATCATGGACTACATACGGATGTATAT 58.366 37.037 20.64 12.15 45.42 0.86
2511 4208 7.068226 CCATCATGGACTACATACGGATGTATA 59.932 40.741 20.64 8.48 42.60 1.47
2512 4209 6.127338 CCATCATGGACTACATACGGATGTAT 60.127 42.308 20.64 11.04 42.60 2.29
2513 4210 5.185056 CCATCATGGACTACATACGGATGTA 59.815 44.000 19.32 19.32 41.62 2.29
2514 4211 4.021104 CCATCATGGACTACATACGGATGT 60.021 45.833 19.12 19.12 44.08 3.06
2515 4212 4.220602 TCCATCATGGACTACATACGGATG 59.779 45.833 5.94 5.94 42.67 3.51
2516 4213 4.416516 TCCATCATGGACTACATACGGAT 58.583 43.478 0.66 0.00 42.67 4.18
2517 4214 3.839778 TCCATCATGGACTACATACGGA 58.160 45.455 0.66 0.00 42.67 4.69
2528 4225 8.733092 AGTCTTTATAGAGATTCCATCATGGA 57.267 34.615 0.66 0.66 46.61 3.41
2563 4260 9.467030 AGAAATATACTCCCTCCTTTCCTAAAT 57.533 33.333 0.00 0.00 0.00 1.40
2564 4261 8.871570 AGAAATATACTCCCTCCTTTCCTAAA 57.128 34.615 0.00 0.00 0.00 1.85
2565 4262 9.962835 TTAGAAATATACTCCCTCCTTTCCTAA 57.037 33.333 0.00 0.00 0.00 2.69
2566 4263 9.603189 CTTAGAAATATACTCCCTCCTTTCCTA 57.397 37.037 0.00 0.00 0.00 2.94
2567 4264 7.016760 GCTTAGAAATATACTCCCTCCTTTCCT 59.983 40.741 0.00 0.00 0.00 3.36
2568 4265 7.162761 GCTTAGAAATATACTCCCTCCTTTCC 58.837 42.308 0.00 0.00 0.00 3.13
2569 4266 7.736893 TGCTTAGAAATATACTCCCTCCTTTC 58.263 38.462 0.00 0.00 0.00 2.62
2570 4267 7.691993 TGCTTAGAAATATACTCCCTCCTTT 57.308 36.000 0.00 0.00 0.00 3.11
2571 4268 7.880265 ATGCTTAGAAATATACTCCCTCCTT 57.120 36.000 0.00 0.00 0.00 3.36
2572 4269 7.880265 AATGCTTAGAAATATACTCCCTCCT 57.120 36.000 0.00 0.00 0.00 3.69
2573 4270 8.926092 AAAATGCTTAGAAATATACTCCCTCC 57.074 34.615 0.00 0.00 0.00 4.30
2611 4308 7.830201 AGCAGTACTAGTACTATATGCTTAGGG 59.170 40.741 30.34 16.68 43.98 3.53
2779 4488 7.298122 TCGCAAAAAGAAAATCTCACTGATAC 58.702 34.615 0.00 0.00 34.45 2.24
2821 4530 2.430332 CAAAGCACAAGGAAAACTGGGA 59.570 45.455 0.00 0.00 0.00 4.37
3004 4839 2.623416 AGCCTTCAAACCGGAAAAGAAG 59.377 45.455 9.46 15.17 36.38 2.85
3130 4965 0.179067 TTGACCACAGACCGGTGTTC 60.179 55.000 14.63 2.28 36.69 3.18
3164 4999 1.406539 CTGTGATAAATGCCCAGGTGC 59.593 52.381 0.00 0.00 0.00 5.01
3241 5076 3.241067 TGTGAGCACGGGAAATAGTAC 57.759 47.619 0.00 0.00 0.00 2.73
3242 5077 4.481368 AATGTGAGCACGGGAAATAGTA 57.519 40.909 0.00 0.00 0.00 1.82
3252 5087 6.571588 GTTGTTGAATAAAAATGTGAGCACG 58.428 36.000 0.00 0.00 0.00 5.34
3272 5107 0.726827 CGGCATGTAGATTGCGTTGT 59.273 50.000 0.00 0.00 41.07 3.32
3274 5109 0.744414 AGCGGCATGTAGATTGCGTT 60.744 50.000 1.45 0.00 41.07 4.84
3331 5174 6.898041 TGTAACAACATTACAGAACTGCATC 58.102 36.000 1.46 0.00 31.86 3.91
3355 5198 7.609056 AGAAGCATGTAAAATTTGAAGCAGAT 58.391 30.769 0.00 0.00 0.00 2.90
3370 5216 4.467438 TCAGTTCAGATGGAGAAGCATGTA 59.533 41.667 0.00 0.00 0.00 2.29
3372 5218 3.870274 TCAGTTCAGATGGAGAAGCATG 58.130 45.455 0.00 0.00 0.00 4.06
3419 5297 2.004583 TACTCCAAATCGAACGCCAG 57.995 50.000 0.00 0.00 0.00 4.85
3692 5570 1.002624 GTCCGGGTTGCCATGAAGA 60.003 57.895 0.00 0.00 0.00 2.87
3699 5591 4.643387 AGCACAGTCCGGGTTGCC 62.643 66.667 0.00 0.00 0.00 4.52
3706 5598 0.249868 TCAAGGTGAAGCACAGTCCG 60.250 55.000 0.00 0.00 35.86 4.79
3709 5601 0.882042 CGCTCAAGGTGAAGCACAGT 60.882 55.000 0.00 0.00 35.86 3.55
3710 5602 0.601046 TCGCTCAAGGTGAAGCACAG 60.601 55.000 0.00 0.00 35.86 3.66
3711 5603 0.880278 GTCGCTCAAGGTGAAGCACA 60.880 55.000 0.00 0.00 35.86 4.57
3712 5604 1.569479 GGTCGCTCAAGGTGAAGCAC 61.569 60.000 0.00 0.00 36.11 4.40
3713 5605 1.301716 GGTCGCTCAAGGTGAAGCA 60.302 57.895 0.00 0.00 36.11 3.91
3714 5606 0.603975 AAGGTCGCTCAAGGTGAAGC 60.604 55.000 0.00 0.00 36.11 3.86
3715 5607 1.151668 CAAGGTCGCTCAAGGTGAAG 58.848 55.000 0.00 0.00 36.11 3.02
3716 5608 0.756294 TCAAGGTCGCTCAAGGTGAA 59.244 50.000 0.00 0.00 36.11 3.18
3717 5609 0.976641 ATCAAGGTCGCTCAAGGTGA 59.023 50.000 0.00 0.00 0.00 4.02
3718 5610 2.672961 TATCAAGGTCGCTCAAGGTG 57.327 50.000 0.00 0.00 0.00 4.00
3738 5630 4.241981 TCCCAGATTATCCATGGATGTCA 58.758 43.478 33.41 19.10 36.09 3.58
3768 5660 1.215647 CTGGCGAGTACCTGACCAC 59.784 63.158 0.00 0.00 0.00 4.16
3769 5661 2.646175 GCTGGCGAGTACCTGACCA 61.646 63.158 0.00 0.00 0.00 4.02
3771 5663 2.184579 GGCTGGCGAGTACCTGAC 59.815 66.667 0.00 0.00 0.00 3.51
4186 6091 3.760035 AGCCAGCCGATCGAACGT 61.760 61.111 18.66 0.00 0.00 3.99
4187 6092 3.257561 CAGCCAGCCGATCGAACG 61.258 66.667 18.66 8.26 0.00 3.95
4188 6093 1.741770 AACAGCCAGCCGATCGAAC 60.742 57.895 18.66 8.44 0.00 3.95
4209 6114 3.626996 CTCTCATGGCGGCCCAACA 62.627 63.158 17.97 0.00 46.14 3.33
4210 6115 2.825836 CTCTCATGGCGGCCCAAC 60.826 66.667 17.97 0.00 46.14 3.77
4211 6116 4.113815 CCTCTCATGGCGGCCCAA 62.114 66.667 17.97 0.00 46.14 4.12
4214 6119 4.247380 CTCCCTCTCATGGCGGCC 62.247 72.222 13.32 13.32 0.00 6.13
4242 6150 0.737219 AATCCAATTCGCAGCTCAGC 59.263 50.000 0.00 0.00 0.00 4.26
4266 6174 6.021626 GCTAGTTGTACGTACTCAAAATCTCG 60.022 42.308 25.12 7.51 0.00 4.04
4305 6213 2.736995 CCATCCACAACGTCGCGT 60.737 61.111 5.77 0.00 43.97 6.01
4306 6214 4.147322 GCCATCCACAACGTCGCG 62.147 66.667 0.00 0.00 0.00 5.87
4309 6217 1.672356 AGCAGCCATCCACAACGTC 60.672 57.895 0.00 0.00 0.00 4.34
4310 6218 1.968017 CAGCAGCCATCCACAACGT 60.968 57.895 0.00 0.00 0.00 3.99
4311 6219 2.872557 CAGCAGCCATCCACAACG 59.127 61.111 0.00 0.00 0.00 4.10
4312 6220 2.570181 GCAGCAGCCATCCACAAC 59.430 61.111 0.00 0.00 33.58 3.32
4340 6257 1.630148 GCTACACTGCTAGTTGTCCG 58.370 55.000 0.00 0.00 0.00 4.79
4351 6271 6.757010 AGTTAGATAAACATTCCGCTACACTG 59.243 38.462 0.00 0.00 40.83 3.66
4362 6282 9.284968 CCGGATGGATTAAGTTAGATAAACATT 57.715 33.333 0.00 0.00 37.82 2.71
4364 6284 6.708949 GCCGGATGGATTAAGTTAGATAAACA 59.291 38.462 5.05 0.00 37.82 2.83
4365 6285 6.148976 GGCCGGATGGATTAAGTTAGATAAAC 59.851 42.308 5.05 0.00 37.49 2.01
4366 6286 6.235664 GGCCGGATGGATTAAGTTAGATAAA 58.764 40.000 5.05 0.00 37.49 1.40
4396 6325 2.157668 CACCGACGTCTTTCCAATCAAG 59.842 50.000 14.70 0.00 0.00 3.02
4399 6328 1.792006 ACACCGACGTCTTTCCAATC 58.208 50.000 14.70 0.00 0.00 2.67
4401 6330 1.955778 TCTACACCGACGTCTTTCCAA 59.044 47.619 14.70 0.00 0.00 3.53
4402 6331 1.608055 TCTACACCGACGTCTTTCCA 58.392 50.000 14.70 0.00 0.00 3.53
4418 6349 4.955811 TGGAAGCAGAGTGTTCTTTCTA 57.044 40.909 0.00 0.00 0.00 2.10
4432 6363 1.405526 GCAGACCGTAGATTGGAAGCA 60.406 52.381 0.00 0.00 0.00 3.91
4434 6365 2.544685 CTGCAGACCGTAGATTGGAAG 58.455 52.381 8.42 0.00 0.00 3.46
4438 6369 0.811616 GGGCTGCAGACCGTAGATTG 60.812 60.000 26.26 0.00 30.66 2.67
4448 6379 3.092511 GATCCAGGGGGCTGCAGA 61.093 66.667 20.43 0.00 0.00 4.26
4449 6380 4.559063 CGATCCAGGGGGCTGCAG 62.559 72.222 10.11 10.11 0.00 4.41
4462 6393 2.125512 AACACGAGCAGCCCGATC 60.126 61.111 2.12 0.00 0.00 3.69
4463 6394 2.434884 CAACACGAGCAGCCCGAT 60.435 61.111 2.12 0.00 0.00 4.18
4465 6396 3.414700 GTCAACACGAGCAGCCCG 61.415 66.667 0.00 0.00 0.00 6.13
4466 6397 3.050275 GGTCAACACGAGCAGCCC 61.050 66.667 0.00 0.00 41.98 5.19
4467 6398 2.031163 AGGTCAACACGAGCAGCC 59.969 61.111 0.00 0.00 44.97 4.85
4468 6399 1.595382 ACAGGTCAACACGAGCAGC 60.595 57.895 0.00 0.00 44.97 5.25
4469 6400 1.835483 GCACAGGTCAACACGAGCAG 61.835 60.000 0.00 0.00 44.97 4.24
4471 6402 1.436195 TTGCACAGGTCAACACGAGC 61.436 55.000 0.00 0.00 42.76 5.03
4472 6403 0.304705 GTTGCACAGGTCAACACGAG 59.695 55.000 0.00 0.00 42.35 4.18
4473 6404 0.107897 AGTTGCACAGGTCAACACGA 60.108 50.000 8.33 0.00 44.50 4.35
4474 6405 0.732571 AAGTTGCACAGGTCAACACG 59.267 50.000 8.33 0.00 44.50 4.49
4487 6418 2.538737 GCGGCCAAAAAGAAAAAGTTGC 60.539 45.455 2.24 0.00 0.00 4.17
4492 6423 1.281899 CGTGCGGCCAAAAAGAAAAA 58.718 45.000 2.24 0.00 0.00 1.94
4501 6432 1.079956 ATTACGTACGTGCGGCCAA 60.080 52.632 30.25 19.16 35.98 4.52
4526 6457 0.886490 GAGCTGAACACCACCACAGG 60.886 60.000 0.00 0.00 0.00 4.00
4527 6458 1.224069 CGAGCTGAACACCACCACAG 61.224 60.000 0.00 0.00 0.00 3.66
4528 6459 1.227527 CGAGCTGAACACCACCACA 60.228 57.895 0.00 0.00 0.00 4.17
4529 6460 1.222115 GACGAGCTGAACACCACCAC 61.222 60.000 0.00 0.00 0.00 4.16
4530 6461 1.069090 GACGAGCTGAACACCACCA 59.931 57.895 0.00 0.00 0.00 4.17
4531 6462 2.022129 CGACGAGCTGAACACCACC 61.022 63.158 0.00 0.00 0.00 4.61
4532 6463 2.022129 CCGACGAGCTGAACACCAC 61.022 63.158 0.00 0.00 0.00 4.16
4533 6464 2.338620 CCGACGAGCTGAACACCA 59.661 61.111 0.00 0.00 0.00 4.17
4534 6465 3.112709 GCCGACGAGCTGAACACC 61.113 66.667 0.00 0.00 0.00 4.16
4535 6466 1.618640 GAAGCCGACGAGCTGAACAC 61.619 60.000 10.87 0.18 44.11 3.32
4536 6467 1.372997 GAAGCCGACGAGCTGAACA 60.373 57.895 10.87 0.00 44.11 3.18
4537 6468 1.073768 GAGAAGCCGACGAGCTGAAC 61.074 60.000 10.87 6.86 44.11 3.18
4538 6469 1.213013 GAGAAGCCGACGAGCTGAA 59.787 57.895 10.87 0.00 44.11 3.02
4539 6470 2.878429 GAGAAGCCGACGAGCTGA 59.122 61.111 10.87 0.00 44.11 4.26
4540 6471 2.578178 CGAGAAGCCGACGAGCTG 60.578 66.667 10.87 0.00 44.11 4.24
4543 6474 4.856607 GGCCGAGAAGCCGACGAG 62.857 72.222 0.00 0.00 44.57 4.18
4569 6500 2.087462 CTGGATGGCCTGCATGCATG 62.087 60.000 22.97 22.70 34.31 4.06
4570 6501 1.832608 CTGGATGGCCTGCATGCAT 60.833 57.895 22.97 5.46 34.31 3.96
4571 6502 2.441348 CTGGATGGCCTGCATGCA 60.441 61.111 21.29 21.29 34.31 3.96
4577 6508 1.964891 CATAGCGCTGGATGGCCTG 60.965 63.158 22.90 0.61 36.29 4.85
4578 6509 2.429058 CATAGCGCTGGATGGCCT 59.571 61.111 22.90 0.00 34.31 5.19
4579 6510 3.360340 GCATAGCGCTGGATGGCC 61.360 66.667 22.90 0.00 37.77 5.36
4607 6538 1.308998 GAGTTTATCATGGCCGGTGG 58.691 55.000 1.90 0.00 0.00 4.61
4608 6539 0.937304 CGAGTTTATCATGGCCGGTG 59.063 55.000 1.90 0.00 0.00 4.94
4609 6540 0.539986 ACGAGTTTATCATGGCCGGT 59.460 50.000 1.90 0.00 0.00 5.28
4610 6541 1.217882 GACGAGTTTATCATGGCCGG 58.782 55.000 0.00 0.00 0.00 6.13
4611 6542 0.852777 CGACGAGTTTATCATGGCCG 59.147 55.000 0.00 0.00 0.00 6.13
4612 6543 1.859080 GACGACGAGTTTATCATGGCC 59.141 52.381 0.00 0.00 0.00 5.36
4613 6544 1.517276 CGACGACGAGTTTATCATGGC 59.483 52.381 0.00 0.00 42.66 4.40
4614 6545 2.793933 ACGACGACGAGTTTATCATGG 58.206 47.619 15.32 0.00 42.66 3.66
4615 6546 3.239941 GGAACGACGACGAGTTTATCATG 59.760 47.826 15.32 0.00 42.66 3.07
4616 6547 3.128242 AGGAACGACGACGAGTTTATCAT 59.872 43.478 15.32 0.00 42.66 2.45
4617 6548 2.485426 AGGAACGACGACGAGTTTATCA 59.515 45.455 15.32 0.00 42.66 2.15
4618 6549 2.844804 CAGGAACGACGACGAGTTTATC 59.155 50.000 15.32 2.47 42.66 1.75
4619 6550 2.415090 CCAGGAACGACGACGAGTTTAT 60.415 50.000 15.32 0.00 42.66 1.40
4620 6551 1.069022 CCAGGAACGACGACGAGTTTA 60.069 52.381 15.32 0.00 42.66 2.01
4621 6552 0.318445 CCAGGAACGACGACGAGTTT 60.318 55.000 15.32 0.00 42.66 2.66
4622 6553 1.285023 CCAGGAACGACGACGAGTT 59.715 57.895 15.32 7.54 42.66 3.01
4623 6554 2.952245 CCAGGAACGACGACGAGT 59.048 61.111 15.32 0.73 42.66 4.18
4624 6555 2.504244 GCCAGGAACGACGACGAG 60.504 66.667 15.32 0.00 42.66 4.18
4625 6556 4.047059 GGCCAGGAACGACGACGA 62.047 66.667 15.32 0.00 42.66 4.20
4627 6558 4.047059 TCGGCCAGGAACGACGAC 62.047 66.667 2.24 0.00 33.69 4.34
4631 6562 3.066190 ATCGTCGGCCAGGAACGA 61.066 61.111 18.20 18.20 37.24 3.85
4632 6563 2.885644 CATCGTCGGCCAGGAACG 60.886 66.667 2.24 7.11 0.00 3.95
4633 6564 2.511600 CCATCGTCGGCCAGGAAC 60.512 66.667 2.24 0.00 0.00 3.62
4660 6591 1.843368 ATGTGATTTCTGCCACTGGG 58.157 50.000 0.00 0.00 34.57 4.45
4663 6594 6.832384 AGATCAAATATGTGATTTCTGCCACT 59.168 34.615 9.82 0.00 38.38 4.00
4898 6847 5.008217 GCACATTACAAGTGTCACACCTAAA 59.992 40.000 3.66 0.00 39.17 1.85
4904 6853 2.290367 GCTGCACATTACAAGTGTCACA 59.710 45.455 5.62 0.00 39.17 3.58
4907 6856 1.725931 GCGCTGCACATTACAAGTGTC 60.726 52.381 0.00 0.00 39.17 3.67
4930 6879 4.516698 CAGCCTAAGTGACACACAAGAAAT 59.483 41.667 8.59 0.00 36.74 2.17
4980 6957 2.280753 GTTTGGGTGGGGGTGTGT 59.719 61.111 0.00 0.00 0.00 3.72
4983 6960 1.731324 TAAGGGTTTGGGTGGGGGTG 61.731 60.000 0.00 0.00 0.00 4.61
4984 6961 1.389093 TAAGGGTTTGGGTGGGGGT 60.389 57.895 0.00 0.00 0.00 4.95
4985 6962 1.386550 CTAAGGGTTTGGGTGGGGG 59.613 63.158 0.00 0.00 0.00 5.40
5040 7050 8.996271 GGATTTGCAAGATTTGAGAAAGATTTT 58.004 29.630 0.00 0.00 0.00 1.82
5046 7056 7.274447 ACTTTGGATTTGCAAGATTTGAGAAA 58.726 30.769 0.00 0.00 0.00 2.52
5068 7079 6.348540 GCTTCGAAATCCACTGTCAAATACTT 60.349 38.462 0.00 0.00 0.00 2.24
5079 7090 1.534729 GGTTGGCTTCGAAATCCACT 58.465 50.000 15.89 0.00 0.00 4.00
5100 7111 3.965347 CGGAGGAGATTACCTTAAGGGAA 59.035 47.826 21.71 21.71 43.37 3.97



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.