Multiple sequence alignment - TraesCS7D01G209200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G209200 chr7D 100.000 5264 0 0 1 5264 167526393 167531656 0.000000e+00 9721.0
1 TraesCS7D01G209200 chr7D 91.176 374 16 5 4435 4807 167530653 167531010 4.740000e-135 492.0
2 TraesCS7D01G209200 chr7D 91.176 374 16 5 4261 4618 167530827 167531199 4.740000e-135 492.0
3 TraesCS7D01G209200 chr7D 86.957 184 9 3 4624 4807 167530653 167530821 5.380000e-45 193.0
4 TraesCS7D01G209200 chr7D 86.957 184 9 3 4261 4429 167531016 167531199 5.380000e-45 193.0
5 TraesCS7D01G209200 chr7A 91.739 2409 100 34 444 2812 169019941 169022290 0.000000e+00 3254.0
6 TraesCS7D01G209200 chr7A 91.413 1479 83 16 3141 4618 169024087 169025522 0.000000e+00 1988.0
7 TraesCS7D01G209200 chr7A 88.115 833 50 20 4435 5264 169025186 169025972 0.000000e+00 944.0
8 TraesCS7D01G209200 chr7A 92.424 264 17 2 181 442 169019396 169019658 1.790000e-99 374.0
9 TraesCS7D01G209200 chr7A 90.000 190 8 3 1 188 169018600 169018780 8.810000e-58 235.0
10 TraesCS7D01G209200 chr7A 81.765 170 22 9 4261 4429 169025361 169025522 3.310000e-27 134.0
11 TraesCS7D01G209200 chr7A 92.424 66 5 0 2998 3063 169022569 169022634 1.560000e-15 95.3
12 TraesCS7D01G209200 chr7B 90.187 2242 101 41 5 2158 131941394 131943604 0.000000e+00 2811.0
13 TraesCS7D01G209200 chr7B 92.593 1701 111 12 2882 4579 131945309 131946997 0.000000e+00 2429.0
14 TraesCS7D01G209200 chr7B 86.177 463 28 14 4807 5264 131946996 131947427 7.980000e-128 468.0
15 TraesCS7D01G209200 chr7B 91.018 334 14 7 4435 4768 131946680 131946997 2.250000e-118 436.0
16 TraesCS7D01G209200 chr7B 93.380 287 11 1 2328 2614 131943923 131944201 8.150000e-113 418.0
17 TraesCS7D01G209200 chr7B 85.714 231 12 9 2599 2829 131944220 131944429 1.910000e-54 224.0
18 TraesCS7D01G209200 chr7B 84.783 184 12 5 4624 4807 131946680 131946847 2.520000e-38 171.0
19 TraesCS7D01G209200 chr7B 93.243 74 5 0 2171 2244 131943741 131943814 5.570000e-20 110.0
20 TraesCS7D01G209200 chr7B 97.619 42 0 1 2841 2882 131944495 131944535 2.630000e-08 71.3
21 TraesCS7D01G209200 chr1D 74.581 716 142 31 3433 4131 349255021 349255713 1.440000e-70 278.0
22 TraesCS7D01G209200 chr1D 73.361 717 146 32 3438 4138 349479011 349479698 1.910000e-54 224.0
23 TraesCS7D01G209200 chr1D 78.176 307 63 4 1850 2154 349254351 349254655 5.380000e-45 193.0
24 TraesCS7D01G209200 chr1D 90.217 92 5 4 2239 2329 155929363 155929451 3.330000e-22 117.0
25 TraesCS7D01G209200 chr1B 75.527 617 117 27 3433 4032 470912663 470913262 6.720000e-69 272.0
26 TraesCS7D01G209200 chr1B 77.124 306 66 4 1850 2153 470911987 470912290 1.950000e-39 174.0
27 TraesCS7D01G209200 chr1A 74.017 712 149 28 3435 4131 449624988 449625678 1.880000e-64 257.0
28 TraesCS7D01G209200 chr1A 77.451 306 67 2 1850 2154 449624360 449624664 1.160000e-41 182.0
29 TraesCS7D01G209200 chr1A 93.103 87 6 0 2242 2328 209362153 209362067 1.540000e-25 128.0
30 TraesCS7D01G209200 chr6B 92.222 90 7 0 2238 2327 359864632 359864721 1.540000e-25 128.0
31 TraesCS7D01G209200 chr4B 94.048 84 5 0 2242 2325 590440232 590440315 1.540000e-25 128.0
32 TraesCS7D01G209200 chr4B 91.209 91 7 1 2239 2328 633769959 633769869 7.160000e-24 122.0
33 TraesCS7D01G209200 chr4D 93.023 86 6 0 2242 2327 346136149 346136064 5.530000e-25 126.0
34 TraesCS7D01G209200 chr2D 93.023 86 6 0 2242 2327 589522254 589522339 5.530000e-25 126.0
35 TraesCS7D01G209200 chr2D 91.011 89 7 1 2242 2330 46368356 46368443 9.260000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G209200 chr7D 167526393 167531656 5263 False 2218.200000 9721 91.253200 1 5264 5 chr7D.!!$F1 5263
1 TraesCS7D01G209200 chr7A 169018600 169025972 7372 False 1003.471429 3254 89.697143 1 5264 7 chr7A.!!$F1 5263
2 TraesCS7D01G209200 chr7B 131941394 131947427 6033 False 793.144444 2811 90.523778 5 5264 9 chr7B.!!$F1 5259
3 TraesCS7D01G209200 chr1D 349254351 349255713 1362 False 235.500000 278 76.378500 1850 4131 2 chr1D.!!$F3 2281
4 TraesCS7D01G209200 chr1D 349479011 349479698 687 False 224.000000 224 73.361000 3438 4138 1 chr1D.!!$F2 700
5 TraesCS7D01G209200 chr1B 470911987 470913262 1275 False 223.000000 272 76.325500 1850 4032 2 chr1B.!!$F1 2182
6 TraesCS7D01G209200 chr1A 449624360 449625678 1318 False 219.500000 257 75.734000 1850 4131 2 chr1A.!!$F1 2281

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 1864 0.824759 AAATTAGCCTCGGAGCTCGT 59.175 50.000 7.83 0.0 43.67 4.18 F
1217 2201 0.107017 ACTGCTTGCTTGAGGTGTGT 60.107 50.000 0.00 0.0 0.00 3.72 F
2168 3177 1.448013 GTGCGTGCCCTCTCCTTAC 60.448 63.158 0.00 0.0 0.00 2.34 F
2787 3988 0.399075 CTGTACCGAAAACCCACCCT 59.601 55.000 0.00 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2657 3853 0.249911 GGCGGCTATCGTTCCATCTT 60.250 55.0 0.00 0.0 41.72 2.40 R
2700 3901 0.250338 ACAGAGCTGAAACCGGAACC 60.250 55.0 9.46 0.0 0.00 3.62 R
3882 7386 0.036388 CCCCATGAAGTGCGTACTGT 60.036 55.0 7.01 0.0 37.19 3.55 R
4480 7991 0.109153 CCAGTGCCTGCATATAGCCA 59.891 55.0 0.00 0.0 44.83 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 157 9.497030 CATCGAGGTTCTCTATTATAGAAATCG 57.503 37.037 14.84 14.84 41.32 3.34
204 833 7.429374 TGAGAAAACCATCTAGATCATGAGT 57.571 36.000 1.03 0.00 0.00 3.41
356 994 2.224523 TGCAACCCTGAGACTAACCAAG 60.225 50.000 0.00 0.00 0.00 3.61
373 1012 6.859420 AACCAAGCAAATCCATGTAAAAAC 57.141 33.333 0.00 0.00 0.00 2.43
399 1038 7.588143 AGTAAGATGAGTCATCAAACTTTCG 57.412 36.000 30.05 0.00 42.72 3.46
408 1047 2.559698 TCAAACTTTCGCATCCCTCA 57.440 45.000 0.00 0.00 0.00 3.86
476 1396 4.464951 TCATTCTTCCGCTAGGTTTACTCA 59.535 41.667 0.00 0.00 39.05 3.41
525 1445 5.535030 TCAAACTCCTTTTTCTTTAGCCCTC 59.465 40.000 0.00 0.00 0.00 4.30
764 1708 4.156008 CCTAGTTCGGAAATGTGAAAAGGG 59.844 45.833 0.20 0.00 31.00 3.95
797 1763 1.019805 GGGACTTGCAAGTAGCCGTC 61.020 60.000 31.20 17.60 44.83 4.79
805 1771 2.434336 TGCAAGTAGCCGTCTATTCCAT 59.566 45.455 0.00 0.00 44.83 3.41
809 1775 2.365617 AGTAGCCGTCTATTCCATGTGG 59.634 50.000 0.00 0.00 0.00 4.17
814 1780 1.942657 CGTCTATTCCATGTGGGCAAG 59.057 52.381 0.00 0.00 36.21 4.01
822 1788 2.779430 TCCATGTGGGCAAGATATCACT 59.221 45.455 5.32 0.00 36.21 3.41
829 1795 8.509690 CATGTGGGCAAGATATCACTTAAATAG 58.490 37.037 5.32 0.00 0.00 1.73
898 1864 0.824759 AAATTAGCCTCGGAGCTCGT 59.175 50.000 7.83 0.00 43.67 4.18
914 1880 6.307800 CGGAGCTCGTAGTAGAATAGTAGTAC 59.692 46.154 7.83 0.00 0.00 2.73
1051 2032 0.833949 TACAACTGAGTGCACCACCA 59.166 50.000 14.63 8.58 34.49 4.17
1161 2142 2.089980 CCCTTCATCTTTGGTGAGCAG 58.910 52.381 0.00 0.00 0.00 4.24
1163 2144 3.618351 CCTTCATCTTTGGTGAGCAGAT 58.382 45.455 0.00 0.00 0.00 2.90
1164 2145 4.015084 CCTTCATCTTTGGTGAGCAGATT 58.985 43.478 0.00 0.00 0.00 2.40
1170 2151 8.985315 TCATCTTTGGTGAGCAGATTTTATAT 57.015 30.769 0.00 0.00 0.00 0.86
1175 2156 9.330063 CTTTGGTGAGCAGATTTTATATAGTCA 57.670 33.333 0.00 0.00 0.00 3.41
1181 2162 7.986889 TGAGCAGATTTTATATAGTCACTTGCA 59.013 33.333 0.00 0.00 0.00 4.08
1184 2165 9.956720 GCAGATTTTATATAGTCACTTGCAAAT 57.043 29.630 0.00 0.00 0.00 2.32
1209 2193 1.460743 TCGAATTCGACTGCTTGCTTG 59.539 47.619 25.96 0.00 44.22 4.01
1212 2196 1.446907 ATTCGACTGCTTGCTTGAGG 58.553 50.000 0.00 0.00 0.00 3.86
1214 2198 0.601046 TCGACTGCTTGCTTGAGGTG 60.601 55.000 0.00 0.00 0.00 4.00
1215 2199 0.882042 CGACTGCTTGCTTGAGGTGT 60.882 55.000 0.00 0.00 0.00 4.16
1216 2200 0.590195 GACTGCTTGCTTGAGGTGTG 59.410 55.000 0.00 0.00 0.00 3.82
1217 2201 0.107017 ACTGCTTGCTTGAGGTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
1513 2510 2.775890 AGACGACGACGATACCCATAT 58.224 47.619 15.32 0.00 42.66 1.78
1591 2588 3.374402 CTCCTGACGGTGTCGGCT 61.374 66.667 0.16 0.00 46.40 5.52
2101 3098 1.872679 GAACGACGAGATGGACGCC 60.873 63.158 0.00 0.00 0.00 5.68
2168 3177 1.448013 GTGCGTGCCCTCTCCTTAC 60.448 63.158 0.00 0.00 0.00 2.34
2199 3332 2.684038 GCCTCCCCCAATTACTTGTCTC 60.684 54.545 0.00 0.00 0.00 3.36
2240 3373 6.870439 AGACACGTTTTTAGGACATAGGTAAC 59.130 38.462 0.00 0.00 0.00 2.50
2245 3378 6.312180 CGTTTTTAGGACATAGGTAACACTCC 59.688 42.308 0.00 0.00 41.41 3.85
2264 3397 9.802039 AACACTCCCTCTGTAAACAAATATAAA 57.198 29.630 0.00 0.00 0.00 1.40
2269 3402 9.287373 TCCCTCTGTAAACAAATATAAAAACGT 57.713 29.630 0.00 0.00 0.00 3.99
2415 3577 3.172229 TCCGCATCGTATGATCACAAA 57.828 42.857 0.00 0.00 30.49 2.83
2628 3824 2.084546 GCCAAAAACGAGCATACTCCT 58.915 47.619 0.00 0.00 40.03 3.69
2657 3853 2.182791 GCGCTCTAGCTGTGCTGA 59.817 61.111 0.00 0.00 40.10 4.26
2664 3865 2.429971 CTCTAGCTGTGCTGAAGATGGA 59.570 50.000 0.00 0.00 40.10 3.41
2689 3890 4.899239 CCGCCGCTGGACTGGATC 62.899 72.222 0.00 0.00 0.00 3.36
2738 3939 6.090223 GCTCTGTTCTAGTTCTAGCTCAAAAC 59.910 42.308 0.00 0.00 0.00 2.43
2767 3968 0.669318 TCGACTCATGTTTCCCACGC 60.669 55.000 0.00 0.00 0.00 5.34
2787 3988 0.399075 CTGTACCGAAAACCCACCCT 59.601 55.000 0.00 0.00 0.00 4.34
2788 3989 1.624813 CTGTACCGAAAACCCACCCTA 59.375 52.381 0.00 0.00 0.00 3.53
2789 3990 1.347378 TGTACCGAAAACCCACCCTAC 59.653 52.381 0.00 0.00 0.00 3.18
2830 4108 5.588246 TCGGCAAAGCACAAAATATATCTGA 59.412 36.000 2.58 0.00 0.00 3.27
2882 4213 1.947146 CGTTCACCACACGCTCGAA 60.947 57.895 0.00 0.00 0.00 3.71
2885 4216 2.063266 GTTCACCACACGCTCGAAATA 58.937 47.619 0.00 0.00 0.00 1.40
2886 4217 1.990799 TCACCACACGCTCGAAATAG 58.009 50.000 0.00 0.00 0.00 1.73
2891 4997 2.852413 CCACACGCTCGAAATAGTACAG 59.148 50.000 0.00 0.00 0.00 2.74
2937 5047 8.617290 ATTTGTTTCCGATTAGTACACTTCTT 57.383 30.769 0.00 0.00 0.00 2.52
2938 5048 7.647907 TTGTTTCCGATTAGTACACTTCTTC 57.352 36.000 0.00 0.00 0.00 2.87
2939 5049 6.989659 TGTTTCCGATTAGTACACTTCTTCT 58.010 36.000 0.00 0.00 0.00 2.85
2943 5053 8.530269 TTCCGATTAGTACACTTCTTCTTTTC 57.470 34.615 0.00 0.00 0.00 2.29
2949 5059 4.816925 AGTACACTTCTTCTTTTCAGTGGC 59.183 41.667 0.00 0.00 40.90 5.01
2992 5102 7.173562 ACACGCATACCTCTCTACTAATCTTAG 59.826 40.741 0.00 0.00 36.82 2.18
3018 5128 3.389002 ACTTTACCTCCGGTTAACACTGT 59.611 43.478 8.10 0.00 37.09 3.55
3027 5137 2.472488 CGGTTAACACTGTACAACGTCC 59.528 50.000 8.10 0.00 0.00 4.79
3079 5206 7.394016 TGACCTGTCTGATAAAAGCTTTGATA 58.606 34.615 13.54 2.47 0.00 2.15
3100 5227 1.065764 CGCTTCGTCGATGATCCCA 59.934 57.895 8.43 0.00 0.00 4.37
3126 5253 4.634443 GTCACCCACACTATATTCACCAAC 59.366 45.833 0.00 0.00 0.00 3.77
3166 6656 5.369409 TGCTTCTCCTTTCAGATCATCAT 57.631 39.130 0.00 0.00 0.00 2.45
3178 6668 5.608449 TCAGATCATCATTAGGAGCTGTTG 58.392 41.667 6.70 0.00 46.93 3.33
3196 6686 4.954092 GTTGAAAACCAAAATTGTGGCA 57.046 36.364 15.07 1.50 42.21 4.92
3201 6691 6.173339 TGAAAACCAAAATTGTGGCAGTAAA 58.827 32.000 15.07 0.00 43.00 2.01
3260 6750 0.817654 GCCAAGCCCGCTAAAAAGAT 59.182 50.000 0.00 0.00 0.00 2.40
3263 6753 1.134946 CAAGCCCGCTAAAAAGATGGG 59.865 52.381 0.00 0.00 43.02 4.00
3265 6755 1.005450 AGCCCGCTAAAAAGATGGGAA 59.995 47.619 0.00 0.00 42.77 3.97
3266 6756 1.134367 GCCCGCTAAAAAGATGGGAAC 59.866 52.381 0.00 0.00 42.77 3.62
3316 6806 7.387122 TGAACTCATGAGATGAAGAAAAGAGTG 59.613 37.037 29.27 0.00 39.11 3.51
3345 6835 6.522054 TCAAAACTAATCGACCTGTTTCTCT 58.478 36.000 10.50 0.00 32.35 3.10
3352 6842 1.802069 GACCTGTTTCTCTGCTCCAC 58.198 55.000 0.00 0.00 0.00 4.02
3372 6862 1.070821 CGTGCAGCTTCTTTGATCGA 58.929 50.000 0.00 0.00 0.00 3.59
3387 6877 0.681733 ATCGAGCCGCCATTATCACT 59.318 50.000 0.00 0.00 0.00 3.41
3675 7165 2.379972 CTGGTCACCCTCTTCGTCTAT 58.620 52.381 0.00 0.00 0.00 1.98
3796 7286 4.116328 CTCTCGTCGCGGGCTTCA 62.116 66.667 6.13 0.00 0.00 3.02
3909 7413 2.354729 CTTCATGGGGTGGCCGAA 59.645 61.111 0.00 0.00 0.00 4.30
3957 7461 1.153188 CATGTATGACCAGGCGCCA 60.153 57.895 31.54 7.75 0.00 5.69
4020 7524 3.075005 TCCCTGGGCAGCTACGTC 61.075 66.667 8.22 0.00 0.00 4.34
4134 7644 1.991121 ACTTCTACTGGGTCGTGACA 58.009 50.000 2.00 0.00 0.00 3.58
4137 7647 1.991121 TCTACTGGGTCGTGACACTT 58.009 50.000 3.68 0.00 35.29 3.16
4164 7674 3.858247 GGTCATGAACCTGGTGTACTAC 58.142 50.000 0.00 0.00 45.45 2.73
4179 7689 5.047943 GGTGTACTACCTGATATGTGCTAGG 60.048 48.000 7.10 0.00 46.51 3.02
4182 7692 3.576118 ACTACCTGATATGTGCTAGGCAG 59.424 47.826 0.00 0.00 40.08 4.85
4203 7713 2.357034 ACGTACAAGCCCGTGCAG 60.357 61.111 0.00 0.00 41.13 4.41
4207 7717 3.177194 TACAAGCCCGTGCAGCACT 62.177 57.895 23.15 5.22 41.13 4.40
4210 7720 3.177194 AAGCCCGTGCAGCACTACA 62.177 57.895 23.15 0.00 41.13 2.74
4294 7804 5.413969 CACTATGCAATGTAGTGTGATGG 57.586 43.478 15.03 0.00 42.47 3.51
4353 7864 4.404073 GGTAGACAGATCTGTGAAGATGGT 59.596 45.833 32.50 4.62 45.05 3.55
4439 7950 0.386838 AGCAAGTTGCCAAGTTGAGC 59.613 50.000 25.32 12.97 46.52 4.26
4440 7951 0.936297 GCAAGTTGCCAAGTTGAGCG 60.936 55.000 25.32 2.85 43.02 5.03
4441 7952 0.662619 CAAGTTGCCAAGTTGAGCGA 59.337 50.000 18.14 3.36 43.02 4.93
4442 7953 0.947244 AAGTTGCCAAGTTGAGCGAG 59.053 50.000 3.87 0.00 0.00 5.03
4443 7954 0.179045 AGTTGCCAAGTTGAGCGAGT 60.179 50.000 3.87 6.29 0.00 4.18
4444 7955 1.070134 AGTTGCCAAGTTGAGCGAGTA 59.930 47.619 3.87 0.00 0.00 2.59
4445 7956 1.871039 GTTGCCAAGTTGAGCGAGTAA 59.129 47.619 3.87 0.00 0.00 2.24
4446 7957 1.508632 TGCCAAGTTGAGCGAGTAAC 58.491 50.000 3.87 0.00 0.00 2.50
4447 7958 1.202592 TGCCAAGTTGAGCGAGTAACA 60.203 47.619 3.87 0.00 0.00 2.41
4448 7959 1.194772 GCCAAGTTGAGCGAGTAACAC 59.805 52.381 3.87 0.00 0.00 3.32
4449 7960 2.755650 CCAAGTTGAGCGAGTAACACT 58.244 47.619 3.87 0.00 0.00 3.55
4450 7961 3.859627 GCCAAGTTGAGCGAGTAACACTA 60.860 47.826 3.87 0.00 0.00 2.74
4451 7962 4.495422 CCAAGTTGAGCGAGTAACACTAT 58.505 43.478 3.87 0.00 0.00 2.12
4452 7963 4.327357 CCAAGTTGAGCGAGTAACACTATG 59.673 45.833 3.87 0.00 0.00 2.23
4453 7964 3.512680 AGTTGAGCGAGTAACACTATGC 58.487 45.455 0.00 0.00 31.92 3.14
4454 7965 3.056821 AGTTGAGCGAGTAACACTATGCA 60.057 43.478 0.00 0.00 33.58 3.96
4455 7966 3.586100 TGAGCGAGTAACACTATGCAA 57.414 42.857 0.00 0.00 33.58 4.08
4456 7967 4.123497 TGAGCGAGTAACACTATGCAAT 57.877 40.909 0.00 0.00 33.58 3.56
4457 7968 3.865164 TGAGCGAGTAACACTATGCAATG 59.135 43.478 0.00 0.00 33.58 2.82
4458 7969 3.861840 AGCGAGTAACACTATGCAATGT 58.138 40.909 0.00 0.00 33.58 2.71
4459 7970 5.006153 AGCGAGTAACACTATGCAATGTA 57.994 39.130 0.00 0.00 33.58 2.29
4460 7971 5.043903 AGCGAGTAACACTATGCAATGTAG 58.956 41.667 0.00 0.00 33.58 2.74
4461 7972 4.804139 GCGAGTAACACTATGCAATGTAGT 59.196 41.667 0.00 0.00 32.04 2.73
4470 7981 7.719778 CACTATGCAATGTAGTGTGATGTAT 57.280 36.000 15.03 0.00 42.47 2.29
4471 7982 8.816640 CACTATGCAATGTAGTGTGATGTATA 57.183 34.615 15.03 0.00 42.47 1.47
4472 7983 9.428097 CACTATGCAATGTAGTGTGATGTATAT 57.572 33.333 15.03 0.00 42.47 0.86
4473 7984 9.645059 ACTATGCAATGTAGTGTGATGTATATC 57.355 33.333 0.00 0.00 31.47 1.63
4474 7985 9.643693 CTATGCAATGTAGTGTGATGTATATCA 57.356 33.333 0.00 0.00 40.92 2.15
4475 7986 7.951530 TGCAATGTAGTGTGATGTATATCAG 57.048 36.000 1.89 0.00 43.66 2.90
4476 7987 7.500141 TGCAATGTAGTGTGATGTATATCAGT 58.500 34.615 1.89 0.00 43.66 3.41
4477 7988 8.637986 TGCAATGTAGTGTGATGTATATCAGTA 58.362 33.333 1.89 0.00 43.66 2.74
4478 7989 9.645059 GCAATGTAGTGTGATGTATATCAGTAT 57.355 33.333 1.89 0.00 43.66 2.12
4483 7994 9.737427 GTAGTGTGATGTATATCAGTATATGGC 57.263 37.037 1.89 0.00 43.66 4.40
4484 7995 8.601047 AGTGTGATGTATATCAGTATATGGCT 57.399 34.615 1.89 0.00 43.66 4.75
4485 7996 9.700831 AGTGTGATGTATATCAGTATATGGCTA 57.299 33.333 1.89 0.00 43.66 3.93
4494 8005 5.282055 TCAGTATATGGCTATATGCAGGC 57.718 43.478 17.95 0.00 45.15 4.85
4510 8021 3.225235 GCACTGGCCTAGCTAGCT 58.775 61.111 23.12 23.12 40.85 3.32
4511 8022 2.431023 GCACTGGCCTAGCTAGCTA 58.569 57.895 22.85 22.85 40.85 3.32
4512 8023 0.316841 GCACTGGCCTAGCTAGCTAG 59.683 60.000 35.39 35.39 40.85 3.42
4513 8024 1.988293 CACTGGCCTAGCTAGCTAGA 58.012 55.000 40.98 25.98 46.56 2.43
4514 8025 2.311463 CACTGGCCTAGCTAGCTAGAA 58.689 52.381 40.98 27.76 46.56 2.10
4515 8026 2.295909 CACTGGCCTAGCTAGCTAGAAG 59.704 54.545 40.98 34.05 46.56 2.85
4516 8027 2.175931 ACTGGCCTAGCTAGCTAGAAGA 59.824 50.000 40.98 26.12 46.56 2.87
4517 8028 3.226777 CTGGCCTAGCTAGCTAGAAGAA 58.773 50.000 40.98 25.80 46.56 2.52
4518 8029 3.226777 TGGCCTAGCTAGCTAGAAGAAG 58.773 50.000 40.98 28.35 46.56 2.85
4519 8030 2.560981 GGCCTAGCTAGCTAGAAGAAGG 59.439 54.545 40.98 30.85 46.56 3.46
4520 8031 3.227614 GCCTAGCTAGCTAGAAGAAGGT 58.772 50.000 40.98 11.67 46.56 3.50
4521 8032 4.400120 GCCTAGCTAGCTAGAAGAAGGTA 58.600 47.826 40.98 13.87 46.56 3.08
4522 8033 4.457949 GCCTAGCTAGCTAGAAGAAGGTAG 59.542 50.000 40.98 26.01 46.56 3.18
4523 8034 5.746656 GCCTAGCTAGCTAGAAGAAGGTAGA 60.747 48.000 40.98 13.18 46.04 2.59
4524 8035 5.704053 CCTAGCTAGCTAGAAGAAGGTAGAC 59.296 48.000 40.98 1.80 46.04 2.59
4525 8036 5.118729 AGCTAGCTAGAAGAAGGTAGACA 57.881 43.478 25.15 0.00 46.04 3.41
4526 8037 5.130350 AGCTAGCTAGAAGAAGGTAGACAG 58.870 45.833 25.15 0.00 46.04 3.51
4527 8038 5.104277 AGCTAGCTAGAAGAAGGTAGACAGA 60.104 44.000 25.15 0.00 46.04 3.41
4528 8039 5.768164 GCTAGCTAGAAGAAGGTAGACAGAT 59.232 44.000 25.15 0.00 46.04 2.90
4529 8040 6.072673 GCTAGCTAGAAGAAGGTAGACAGATC 60.073 46.154 25.15 0.00 46.04 2.75
4530 8041 6.013554 AGCTAGAAGAAGGTAGACAGATCT 57.986 41.667 0.00 0.00 39.15 2.75
4531 8042 5.827797 AGCTAGAAGAAGGTAGACAGATCTG 59.172 44.000 21.37 21.37 36.29 2.90
4532 8043 5.507315 GCTAGAAGAAGGTAGACAGATCTGC 60.507 48.000 22.83 14.86 36.29 4.26
4533 8044 4.348486 AGAAGAAGGTAGACAGATCTGCA 58.652 43.478 22.83 5.40 39.21 4.41
4534 8045 4.774726 AGAAGAAGGTAGACAGATCTGCAA 59.225 41.667 22.83 5.40 39.21 4.08
4535 8046 5.247110 AGAAGAAGGTAGACAGATCTGCAAA 59.753 40.000 22.83 5.02 39.21 3.68
4536 8047 5.083533 AGAAGGTAGACAGATCTGCAAAG 57.916 43.478 22.83 0.00 39.21 2.77
4537 8048 4.774726 AGAAGGTAGACAGATCTGCAAAGA 59.225 41.667 22.83 1.03 39.21 2.52
4538 8049 5.424895 AGAAGGTAGACAGATCTGCAAAGAT 59.575 40.000 22.83 1.35 39.21 2.40
4539 8050 5.021033 AGGTAGACAGATCTGCAAAGATG 57.979 43.478 22.83 0.00 39.21 2.90
4540 8051 4.125703 GGTAGACAGATCTGCAAAGATGG 58.874 47.826 22.83 0.00 39.21 3.51
4541 8052 4.141846 GGTAGACAGATCTGCAAAGATGGA 60.142 45.833 22.83 0.00 39.21 3.41
4542 8053 4.139859 AGACAGATCTGCAAAGATGGAG 57.860 45.455 22.83 0.00 45.62 3.86
4543 8054 3.118334 AGACAGATCTGCAAAGATGGAGG 60.118 47.826 22.83 0.00 44.47 4.30
4544 8055 2.575279 ACAGATCTGCAAAGATGGAGGT 59.425 45.455 22.83 0.00 44.47 3.85
4545 8056 2.943690 CAGATCTGCAAAGATGGAGGTG 59.056 50.000 10.38 0.00 44.47 4.00
4546 8057 2.842496 AGATCTGCAAAGATGGAGGTGA 59.158 45.455 0.00 0.00 44.47 4.02
4547 8058 3.265221 AGATCTGCAAAGATGGAGGTGAA 59.735 43.478 0.00 0.00 44.47 3.18
4548 8059 3.726557 TCTGCAAAGATGGAGGTGAAT 57.273 42.857 0.00 0.00 44.47 2.57
4549 8060 3.349927 TCTGCAAAGATGGAGGTGAATG 58.650 45.455 0.00 0.00 44.47 2.67
4550 8061 3.087031 CTGCAAAGATGGAGGTGAATGT 58.913 45.455 0.00 0.00 40.99 2.71
4551 8062 4.019411 TCTGCAAAGATGGAGGTGAATGTA 60.019 41.667 0.00 0.00 44.47 2.29
4552 8063 4.858850 TGCAAAGATGGAGGTGAATGTAT 58.141 39.130 0.00 0.00 0.00 2.29
4553 8064 5.263599 TGCAAAGATGGAGGTGAATGTATT 58.736 37.500 0.00 0.00 0.00 1.89
4554 8065 6.422333 TGCAAAGATGGAGGTGAATGTATTA 58.578 36.000 0.00 0.00 0.00 0.98
4555 8066 6.889177 TGCAAAGATGGAGGTGAATGTATTAA 59.111 34.615 0.00 0.00 0.00 1.40
4556 8067 7.067372 TGCAAAGATGGAGGTGAATGTATTAAG 59.933 37.037 0.00 0.00 0.00 1.85
4557 8068 7.067494 GCAAAGATGGAGGTGAATGTATTAAGT 59.933 37.037 0.00 0.00 0.00 2.24
4558 8069 8.616076 CAAAGATGGAGGTGAATGTATTAAGTC 58.384 37.037 0.00 0.00 0.00 3.01
4559 8070 7.437713 AGATGGAGGTGAATGTATTAAGTCA 57.562 36.000 0.00 0.00 0.00 3.41
4560 8071 8.038862 AGATGGAGGTGAATGTATTAAGTCAT 57.961 34.615 0.00 0.00 0.00 3.06
4561 8072 8.497745 AGATGGAGGTGAATGTATTAAGTCATT 58.502 33.333 7.36 7.36 37.04 2.57
4562 8073 8.682936 ATGGAGGTGAATGTATTAAGTCATTC 57.317 34.615 19.62 19.62 45.59 2.67
4571 8082 8.561738 AATGTATTAAGTCATTCAAGGTTCGT 57.438 30.769 3.15 0.00 29.74 3.85
4572 8083 9.661563 AATGTATTAAGTCATTCAAGGTTCGTA 57.338 29.630 3.15 0.00 29.74 3.43
4573 8084 9.832445 ATGTATTAAGTCATTCAAGGTTCGTAT 57.168 29.630 0.00 0.00 0.00 3.06
4574 8085 9.093970 TGTATTAAGTCATTCAAGGTTCGTATG 57.906 33.333 0.00 0.00 0.00 2.39
4575 8086 6.978343 TTAAGTCATTCAAGGTTCGTATGG 57.022 37.500 0.00 0.00 0.00 2.74
4576 8087 4.819105 AGTCATTCAAGGTTCGTATGGA 57.181 40.909 0.00 0.00 0.00 3.41
4577 8088 4.759782 AGTCATTCAAGGTTCGTATGGAG 58.240 43.478 0.00 0.00 0.00 3.86
4578 8089 4.466370 AGTCATTCAAGGTTCGTATGGAGA 59.534 41.667 0.00 0.00 0.00 3.71
4579 8090 5.129485 AGTCATTCAAGGTTCGTATGGAGAT 59.871 40.000 0.00 0.00 0.00 2.75
4580 8091 5.463724 GTCATTCAAGGTTCGTATGGAGATC 59.536 44.000 0.00 0.00 0.00 2.75
4581 8092 5.128663 TCATTCAAGGTTCGTATGGAGATCA 59.871 40.000 0.00 0.00 0.00 2.92
4582 8093 4.655762 TCAAGGTTCGTATGGAGATCAG 57.344 45.455 0.00 0.00 0.00 2.90
4583 8094 3.384789 TCAAGGTTCGTATGGAGATCAGG 59.615 47.826 0.00 0.00 0.00 3.86
4584 8095 3.314307 AGGTTCGTATGGAGATCAGGA 57.686 47.619 0.00 0.00 0.00 3.86
4585 8096 3.643237 AGGTTCGTATGGAGATCAGGAA 58.357 45.455 0.00 0.00 0.00 3.36
4586 8097 3.385111 AGGTTCGTATGGAGATCAGGAAC 59.615 47.826 0.00 1.44 35.29 3.62
4587 8098 3.132289 GGTTCGTATGGAGATCAGGAACA 59.868 47.826 13.99 0.00 36.53 3.18
4588 8099 4.363999 GTTCGTATGGAGATCAGGAACAG 58.636 47.826 9.45 0.00 35.70 3.16
4589 8100 3.898482 TCGTATGGAGATCAGGAACAGA 58.102 45.455 0.00 0.00 0.00 3.41
4590 8101 3.885901 TCGTATGGAGATCAGGAACAGAG 59.114 47.826 0.00 0.00 0.00 3.35
4591 8102 3.885901 CGTATGGAGATCAGGAACAGAGA 59.114 47.826 0.00 0.00 0.00 3.10
4592 8103 4.339530 CGTATGGAGATCAGGAACAGAGAA 59.660 45.833 0.00 0.00 0.00 2.87
4593 8104 5.163509 CGTATGGAGATCAGGAACAGAGAAA 60.164 44.000 0.00 0.00 0.00 2.52
4594 8105 5.972327 ATGGAGATCAGGAACAGAGAAAT 57.028 39.130 0.00 0.00 0.00 2.17
4595 8106 5.095145 TGGAGATCAGGAACAGAGAAATG 57.905 43.478 0.00 0.00 0.00 2.32
4596 8107 4.533707 TGGAGATCAGGAACAGAGAAATGT 59.466 41.667 0.00 0.00 33.96 2.71
4597 8108 5.721480 TGGAGATCAGGAACAGAGAAATGTA 59.279 40.000 0.00 0.00 31.70 2.29
4598 8109 6.385176 TGGAGATCAGGAACAGAGAAATGTAT 59.615 38.462 0.00 0.00 31.70 2.29
4599 8110 6.928492 GGAGATCAGGAACAGAGAAATGTATC 59.072 42.308 0.00 0.00 31.70 2.24
4600 8111 7.201992 GGAGATCAGGAACAGAGAAATGTATCT 60.202 40.741 0.00 0.00 30.06 1.98
4601 8112 8.774546 AGATCAGGAACAGAGAAATGTATCTA 57.225 34.615 0.00 0.00 31.70 1.98
4602 8113 8.859090 AGATCAGGAACAGAGAAATGTATCTAG 58.141 37.037 0.00 0.00 31.70 2.43
4603 8114 7.962995 TCAGGAACAGAGAAATGTATCTAGT 57.037 36.000 0.00 0.00 31.70 2.57
4604 8115 8.367660 TCAGGAACAGAGAAATGTATCTAGTT 57.632 34.615 0.00 0.00 33.20 2.24
4605 8116 8.470805 TCAGGAACAGAGAAATGTATCTAGTTC 58.529 37.037 11.39 11.39 40.38 3.01
4606 8117 8.253810 CAGGAACAGAGAAATGTATCTAGTTCA 58.746 37.037 17.23 0.00 41.54 3.18
4607 8118 8.254508 AGGAACAGAGAAATGTATCTAGTTCAC 58.745 37.037 17.23 10.79 41.54 3.18
4608 8119 8.254508 GGAACAGAGAAATGTATCTAGTTCACT 58.745 37.037 17.23 0.00 41.54 3.41
4611 8122 8.410141 ACAGAGAAATGTATCTAGTTCACTAGC 58.590 37.037 8.88 0.00 44.24 3.42
4612 8123 8.409371 CAGAGAAATGTATCTAGTTCACTAGCA 58.591 37.037 8.88 2.90 44.24 3.49
4613 8124 8.972127 AGAGAAATGTATCTAGTTCACTAGCAA 58.028 33.333 8.88 0.00 44.24 3.91
4614 8125 9.243637 GAGAAATGTATCTAGTTCACTAGCAAG 57.756 37.037 8.88 0.00 44.24 4.01
4615 8126 8.754080 AGAAATGTATCTAGTTCACTAGCAAGT 58.246 33.333 8.88 0.00 44.24 3.16
4616 8127 9.372369 GAAATGTATCTAGTTCACTAGCAAGTT 57.628 33.333 8.88 1.33 44.24 2.66
4617 8128 8.709386 AATGTATCTAGTTCACTAGCAAGTTG 57.291 34.615 8.88 0.00 44.24 3.16
4618 8129 6.100004 TGTATCTAGTTCACTAGCAAGTTGC 58.900 40.000 20.44 20.44 44.24 4.17
4619 8130 3.926616 TCTAGTTCACTAGCAAGTTGCC 58.073 45.455 24.02 7.05 46.52 4.52
4620 8131 2.638480 AGTTCACTAGCAAGTTGCCA 57.362 45.000 24.02 10.25 46.52 4.92
4621 8132 2.930950 AGTTCACTAGCAAGTTGCCAA 58.069 42.857 24.02 11.92 46.52 4.52
4622 8133 2.880890 AGTTCACTAGCAAGTTGCCAAG 59.119 45.455 24.02 22.07 46.52 3.61
4623 8134 2.618709 GTTCACTAGCAAGTTGCCAAGT 59.381 45.455 24.02 22.69 46.52 3.16
4624 8135 2.930950 TCACTAGCAAGTTGCCAAGTT 58.069 42.857 24.02 7.99 46.52 2.66
4625 8136 2.618241 TCACTAGCAAGTTGCCAAGTTG 59.382 45.455 24.02 18.56 46.52 3.16
4626 8137 2.618241 CACTAGCAAGTTGCCAAGTTGA 59.382 45.455 25.32 7.55 46.52 3.18
4627 8138 2.880890 ACTAGCAAGTTGCCAAGTTGAG 59.119 45.455 25.32 17.36 46.52 3.02
4712 8223 5.746656 GCCTAGCTAGCTAGAAGAAGGTAGA 60.747 48.000 40.98 13.18 46.04 2.59
4772 8283 8.790718 CATTCAAAGGTTTATATGGAGATCAGG 58.209 37.037 0.00 0.00 0.00 3.86
4800 8311 9.469097 ACAGAGAAATGTATCTAGTTCACTAGT 57.531 33.333 12.71 0.00 44.74 2.57
4847 8358 2.987149 CGAATGTGTAACTCTGCTCGTT 59.013 45.455 0.00 0.00 38.04 3.85
4854 8365 4.030306 GTGTAACTCTGCTCGTTATGTTCG 59.970 45.833 0.00 0.00 0.00 3.95
4888 8400 4.217550 CGGTTATTGGAAGTGTTTGATGGT 59.782 41.667 0.00 0.00 0.00 3.55
4899 8411 9.353999 GGAAGTGTTTGATGGTAAATTTATGTC 57.646 33.333 0.31 1.58 0.00 3.06
4900 8412 8.964420 AAGTGTTTGATGGTAAATTTATGTCG 57.036 30.769 0.31 0.00 0.00 4.35
4901 8413 8.106247 AGTGTTTGATGGTAAATTTATGTCGT 57.894 30.769 0.31 0.00 0.00 4.34
4917 8429 4.481930 TGTCGTGAATTTGTCAATGACC 57.518 40.909 11.24 0.00 40.63 4.02
4926 8438 6.983307 TGAATTTGTCAATGACCGAAACAATT 59.017 30.769 11.24 5.86 31.51 2.32
4936 8448 4.582656 TGACCGAAACAATTTGATCTTGGT 59.417 37.500 2.79 6.15 0.00 3.67
4944 8456 8.650143 AAACAATTTGATCTTGGTACCATAGT 57.350 30.769 17.17 4.14 0.00 2.12
4948 8460 9.613428 CAATTTGATCTTGGTACCATAGTTCTA 57.387 33.333 17.17 13.27 0.00 2.10
4952 8464 9.832445 TTGATCTTGGTACCATAGTTCTAAATC 57.168 33.333 17.17 12.73 0.00 2.17
4953 8465 8.988060 TGATCTTGGTACCATAGTTCTAAATCA 58.012 33.333 17.17 14.72 0.00 2.57
5030 8544 3.251729 CACAGTCTTGGACATGACCTTTG 59.748 47.826 15.29 8.54 36.49 2.77
5079 8593 2.593775 CGAATAAAGCCATTGTTGTGCG 59.406 45.455 0.00 0.00 0.00 5.34
5177 8692 4.520492 CAGATATGGAATTAGGTTGGTGGC 59.480 45.833 0.00 0.00 0.00 5.01
5235 8750 2.885113 CTGGCTGTGGTCGATCGA 59.115 61.111 15.15 15.15 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.892063 AAAGAGTCTCTGGAGCCGAC 59.108 55.000 2.28 0.00 0.00 4.79
70 71 0.108424 CCAAAGAGTCTCTGGAGCCG 60.108 60.000 6.67 0.00 31.38 5.52
71 72 0.251634 CCCAAAGAGTCTCTGGAGCC 59.748 60.000 14.50 0.00 31.38 4.70
179 185 8.032045 ACTCATGATCTAGATGGTTTTCTCAT 57.968 34.615 10.74 2.61 0.00 2.90
204 833 9.502145 GTTCGCTGTTCATCATAATCAATAAAA 57.498 29.630 0.00 0.00 0.00 1.52
247 878 3.237746 TGGCTGAGGATTCTCTAGATGG 58.762 50.000 1.86 0.00 40.58 3.51
339 977 1.729586 TGCTTGGTTAGTCTCAGGGT 58.270 50.000 0.00 0.00 0.00 4.34
373 1012 8.802856 CGAAAGTTTGATGACTCATCTTACTAG 58.197 37.037 18.01 11.94 41.06 2.57
380 1019 4.668576 TGCGAAAGTTTGATGACTCATC 57.331 40.909 11.59 11.59 40.88 2.92
399 1038 5.302568 TGGAAATAATGTCATTGAGGGATGC 59.697 40.000 8.39 0.00 0.00 3.91
408 1047 9.258629 TCCTTGAAAGATGGAAATAATGTCATT 57.741 29.630 3.06 3.06 0.00 2.57
449 1369 0.598680 CCTAGCGGAAGAATGAGGCG 60.599 60.000 0.00 0.00 0.00 5.52
525 1445 3.931468 GGATGATATCGAGTGGATGCAAG 59.069 47.826 0.00 0.00 36.55 4.01
764 1708 3.615155 CAAGTCCCCTTTCTTCTGGATC 58.385 50.000 0.00 0.00 0.00 3.36
789 1733 2.548067 CCCACATGGAATAGACGGCTAC 60.548 54.545 0.00 0.00 37.39 3.58
790 1734 1.691976 CCCACATGGAATAGACGGCTA 59.308 52.381 0.00 0.00 37.39 3.93
797 1763 5.413833 GTGATATCTTGCCCACATGGAATAG 59.586 44.000 3.98 0.00 37.39 1.73
805 1771 7.573710 ACTATTTAAGTGATATCTTGCCCACA 58.426 34.615 3.98 0.00 36.93 4.17
822 1788 8.958119 ATCTGAGGTTAATTCGCACTATTTAA 57.042 30.769 0.00 0.00 0.00 1.52
829 1795 7.016361 ACAATAATCTGAGGTTAATTCGCAC 57.984 36.000 0.00 0.00 0.00 5.34
833 1799 6.293462 GCGGGACAATAATCTGAGGTTAATTC 60.293 42.308 0.00 0.00 0.00 2.17
870 1836 3.928375 TCCGAGGCTAATTTACACGAAAC 59.072 43.478 0.00 0.00 0.00 2.78
914 1880 0.251354 AGTGCCATGCCACTAGACTG 59.749 55.000 7.71 0.00 43.86 3.51
946 1914 7.672983 GCTTCACATATTTATAGCTAAGCCA 57.327 36.000 0.00 0.00 32.65 4.75
984 1965 1.000052 TGCATCGTGAACTCGTGGTAA 60.000 47.619 0.00 0.00 0.00 2.85
1051 2032 2.741092 CTGTGGTGGTAGCGGTGT 59.259 61.111 0.00 0.00 0.00 4.16
1170 2151 9.554724 GAATTCGAATTAATTTGCAAGTGACTA 57.445 29.630 22.78 0.00 0.00 2.59
1209 2193 2.607892 GCGAGCCAACACACACCTC 61.608 63.158 0.00 0.00 0.00 3.85
1250 2247 2.925170 ACCACGGCCAGCTTCTCT 60.925 61.111 2.24 0.00 0.00 3.10
1466 2463 3.848191 GCGAAACAAGTGTATGTGTGTGG 60.848 47.826 0.00 0.00 32.81 4.17
1467 2464 3.242576 TGCGAAACAAGTGTATGTGTGTG 60.243 43.478 0.00 0.00 32.81 3.82
1468 2465 2.939756 TGCGAAACAAGTGTATGTGTGT 59.060 40.909 0.00 0.00 32.81 3.72
1469 2466 3.288242 GTGCGAAACAAGTGTATGTGTG 58.712 45.455 0.00 0.00 32.81 3.82
1470 2467 2.033236 CGTGCGAAACAAGTGTATGTGT 60.033 45.455 0.00 0.00 32.81 3.72
1471 2468 2.033236 ACGTGCGAAACAAGTGTATGTG 60.033 45.455 0.00 0.00 39.69 3.21
1472 2469 2.206750 ACGTGCGAAACAAGTGTATGT 58.793 42.857 0.00 0.00 39.69 2.29
1473 2470 2.941891 ACGTGCGAAACAAGTGTATG 57.058 45.000 0.00 0.00 39.69 2.39
1474 2471 3.671928 GTCTACGTGCGAAACAAGTGTAT 59.328 43.478 0.00 0.00 41.37 2.29
1513 2510 2.608016 CGTACAGTTCAGCTCTGCTTCA 60.608 50.000 0.97 0.00 36.40 3.02
2101 3098 1.071471 GCCGTACATGGAGATGGGG 59.929 63.158 0.00 0.00 33.39 4.96
2168 3177 3.662759 TTGGGGGAGGCAGTATTTTAG 57.337 47.619 0.00 0.00 0.00 1.85
2199 3332 3.242944 CGTGTCTAGATACGGCAAATGTG 59.757 47.826 28.37 3.11 41.29 3.21
2278 3411 7.813852 AAGAGCGTTTACATCACTACTTTAG 57.186 36.000 0.00 0.00 0.00 1.85
2291 3424 9.023967 TCGGTAAAGAAATATAAGAGCGTTTAC 57.976 33.333 0.00 0.00 0.00 2.01
2300 3433 8.858094 AGTACTCCCTCGGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2415 3577 2.168521 CACGGGGATTACACACTCTGAT 59.831 50.000 0.00 0.00 0.00 2.90
2652 3848 2.483714 GGCTATCGTTCCATCTTCAGCA 60.484 50.000 0.00 0.00 0.00 4.41
2655 3851 1.538204 GCGGCTATCGTTCCATCTTCA 60.538 52.381 0.00 0.00 41.72 3.02
2656 3852 1.140816 GCGGCTATCGTTCCATCTTC 58.859 55.000 0.00 0.00 41.72 2.87
2657 3853 0.249911 GGCGGCTATCGTTCCATCTT 60.250 55.000 0.00 0.00 41.72 2.40
2696 3897 3.419759 CTGAAACCGGAACCGCGG 61.420 66.667 26.86 26.86 38.24 6.46
2700 3901 0.250338 ACAGAGCTGAAACCGGAACC 60.250 55.000 9.46 0.00 0.00 3.62
2708 3909 5.478679 AGCTAGAACTAGAACAGAGCTGAAA 59.521 40.000 12.33 0.00 37.41 2.69
2711 3912 4.397730 TGAGCTAGAACTAGAACAGAGCTG 59.602 45.833 12.33 0.00 38.84 4.24
2738 3939 4.536364 AACATGAGTCGAACACAACTTG 57.464 40.909 0.00 0.00 0.00 3.16
2752 3953 0.606401 ACAGGCGTGGGAAACATGAG 60.606 55.000 11.67 0.00 38.41 2.90
2767 3968 0.607217 GGGTGGGTTTTCGGTACAGG 60.607 60.000 0.00 0.00 0.00 4.00
2787 3988 4.755411 CCGAAATCCAGCTCAAAGTAGTA 58.245 43.478 0.00 0.00 0.00 1.82
2788 3989 3.600388 CCGAAATCCAGCTCAAAGTAGT 58.400 45.455 0.00 0.00 0.00 2.73
2789 3990 2.352960 GCCGAAATCCAGCTCAAAGTAG 59.647 50.000 0.00 0.00 0.00 2.57
2830 4108 8.709308 AGTTATCTGCTCATCTTGGTTAGTAAT 58.291 33.333 0.00 0.00 0.00 1.89
2885 4216 8.258007 TGCTGCTGTTAATCTATAAACTGTACT 58.742 33.333 0.00 0.00 0.00 2.73
2886 4217 8.420374 TGCTGCTGTTAATCTATAAACTGTAC 57.580 34.615 0.00 0.00 0.00 2.90
2891 4997 9.573133 ACAAATTGCTGCTGTTAATCTATAAAC 57.427 29.630 0.00 0.00 0.00 2.01
2949 5059 1.314534 TGTCGCATTTCATGGGCAGG 61.315 55.000 0.00 0.00 42.34 4.85
3018 5128 4.699637 AGATTGAAACACTGGACGTTGTA 58.300 39.130 0.00 0.00 0.00 2.41
3027 5137 4.823989 AGGGACTTGAAGATTGAAACACTG 59.176 41.667 0.00 0.00 27.25 3.66
3079 5206 1.065928 GATCATCGACGAAGCGGGT 59.934 57.895 0.00 0.00 0.00 5.28
3100 5227 4.501071 GTGAATATAGTGTGGGTGACGTT 58.499 43.478 0.00 0.00 0.00 3.99
3166 6656 5.923733 TTTTGGTTTTCAACAGCTCCTAA 57.076 34.783 0.00 0.00 34.67 2.69
3175 6665 4.394610 ACTGCCACAATTTTGGTTTTCAAC 59.605 37.500 12.16 0.00 39.09 3.18
3178 6668 6.457663 GGTTTACTGCCACAATTTTGGTTTTC 60.458 38.462 12.16 0.00 39.09 2.29
3196 6686 3.637769 TGGGAACAAAGCTTGGTTTACT 58.362 40.909 20.17 0.00 37.44 2.24
3229 6719 2.564721 GCTTGGCACCACTGGAACC 61.565 63.158 0.71 3.14 0.00 3.62
3252 6742 5.860941 TTGTTGCTGTTCCCATCTTTTTA 57.139 34.783 0.00 0.00 0.00 1.52
3316 6806 4.631813 ACAGGTCGATTAGTTTTGAGCATC 59.368 41.667 0.00 0.00 31.24 3.91
3352 6842 0.095935 CGATCAAAGAAGCTGCACGG 59.904 55.000 1.02 0.00 0.00 4.94
3372 6862 0.530650 CGTCAGTGATAATGGCGGCT 60.531 55.000 11.43 0.00 41.88 5.52
3657 7147 5.046795 GGTCATAGACGAAGAGGGTGACC 62.047 56.522 5.95 5.95 44.84 4.02
3882 7386 0.036388 CCCCATGAAGTGCGTACTGT 60.036 55.000 7.01 0.00 37.19 3.55
3909 7413 2.030562 CCCACCGAGTTGAACGCT 59.969 61.111 0.00 0.00 0.00 5.07
3957 7461 2.818714 GTGCTGCGCATGCTCTCT 60.819 61.111 25.02 0.00 41.91 3.10
4065 7575 2.526873 AGCCAGTTGGACCCGTCT 60.527 61.111 1.45 0.00 37.39 4.18
4134 7644 2.191128 GGTTCATGACCTGCAGAAGT 57.809 50.000 17.39 5.08 45.55 3.01
4164 7674 3.321968 TGTACTGCCTAGCACATATCAGG 59.678 47.826 0.00 0.00 33.79 3.86
4179 7689 1.349259 CGGGCTTGTACGTGTACTGC 61.349 60.000 11.14 13.52 37.00 4.40
4182 7692 4.972591 ACGGGCTTGTACGTGTAC 57.027 55.556 0.00 3.21 42.39 2.90
4203 7713 1.208293 CCCTCCTCTTCCTTGTAGTGC 59.792 57.143 0.00 0.00 0.00 4.40
4207 7717 1.008449 CTCCCCCTCCTCTTCCTTGTA 59.992 57.143 0.00 0.00 0.00 2.41
4210 7720 1.162951 TCCTCCCCCTCCTCTTCCTT 61.163 60.000 0.00 0.00 0.00 3.36
4439 7950 6.261033 CACTACATTGCATAGTGTTACTCG 57.739 41.667 15.03 0.00 43.03 4.18
4447 7958 9.645059 GATATACATCACACTACATTGCATAGT 57.355 33.333 0.00 0.00 32.98 2.12
4448 7959 9.643693 TGATATACATCACACTACATTGCATAG 57.356 33.333 0.00 0.00 36.22 2.23
4449 7960 9.643693 CTGATATACATCACACTACATTGCATA 57.356 33.333 0.00 0.00 36.22 3.14
4450 7961 8.152898 ACTGATATACATCACACTACATTGCAT 58.847 33.333 0.00 0.00 36.22 3.96
4451 7962 7.500141 ACTGATATACATCACACTACATTGCA 58.500 34.615 0.00 0.00 36.22 4.08
4452 7963 7.953158 ACTGATATACATCACACTACATTGC 57.047 36.000 0.00 0.00 36.22 3.56
4457 7968 9.737427 GCCATATACTGATATACATCACACTAC 57.263 37.037 0.00 0.00 36.22 2.73
4458 7969 9.700831 AGCCATATACTGATATACATCACACTA 57.299 33.333 0.00 0.00 36.22 2.74
4459 7970 8.601047 AGCCATATACTGATATACATCACACT 57.399 34.615 0.00 0.00 36.22 3.55
4468 7979 8.753133 GCCTGCATATAGCCATATACTGATATA 58.247 37.037 0.00 0.00 44.83 0.86
4469 7980 7.236225 TGCCTGCATATAGCCATATACTGATAT 59.764 37.037 0.00 0.00 44.83 1.63
4470 7981 6.554605 TGCCTGCATATAGCCATATACTGATA 59.445 38.462 0.00 0.00 44.83 2.15
4471 7982 5.367644 TGCCTGCATATAGCCATATACTGAT 59.632 40.000 0.00 0.00 44.83 2.90
4472 7983 4.716287 TGCCTGCATATAGCCATATACTGA 59.284 41.667 0.00 0.00 44.83 3.41
4473 7984 4.813161 GTGCCTGCATATAGCCATATACTG 59.187 45.833 0.00 0.00 44.83 2.74
4474 7985 4.718774 AGTGCCTGCATATAGCCATATACT 59.281 41.667 0.00 0.00 44.83 2.12
4475 7986 4.813161 CAGTGCCTGCATATAGCCATATAC 59.187 45.833 0.00 0.00 44.83 1.47
4476 7987 4.141642 CCAGTGCCTGCATATAGCCATATA 60.142 45.833 0.00 0.00 44.83 0.86
4477 7988 3.371273 CCAGTGCCTGCATATAGCCATAT 60.371 47.826 0.00 0.00 44.83 1.78
4478 7989 2.026915 CCAGTGCCTGCATATAGCCATA 60.027 50.000 0.00 0.00 44.83 2.74
4479 7990 1.271762 CCAGTGCCTGCATATAGCCAT 60.272 52.381 0.00 0.00 44.83 4.40
4480 7991 0.109153 CCAGTGCCTGCATATAGCCA 59.891 55.000 0.00 0.00 44.83 4.75
4481 7992 1.239968 GCCAGTGCCTGCATATAGCC 61.240 60.000 0.00 0.00 44.83 3.93
4482 7993 2.251600 GCCAGTGCCTGCATATAGC 58.748 57.895 0.00 0.00 45.96 2.97
4493 8004 0.316841 CTAGCTAGCTAGGCCAGTGC 59.683 60.000 34.95 5.96 41.58 4.40
4494 8005 1.988293 TCTAGCTAGCTAGGCCAGTG 58.012 55.000 38.82 21.04 44.45 3.66
4495 8006 2.175931 TCTTCTAGCTAGCTAGGCCAGT 59.824 50.000 38.82 12.32 44.45 4.00
4496 8007 2.870175 TCTTCTAGCTAGCTAGGCCAG 58.130 52.381 38.82 31.52 44.45 4.85
4497 8008 3.226777 CTTCTTCTAGCTAGCTAGGCCA 58.773 50.000 38.82 26.23 44.45 5.36
4498 8009 2.560981 CCTTCTTCTAGCTAGCTAGGCC 59.439 54.545 38.82 6.58 44.45 5.19
4499 8010 3.227614 ACCTTCTTCTAGCTAGCTAGGC 58.772 50.000 38.82 13.91 44.45 3.93
4500 8011 5.704053 GTCTACCTTCTTCTAGCTAGCTAGG 59.296 48.000 38.82 30.71 44.45 3.02
4501 8012 6.292923 TGTCTACCTTCTTCTAGCTAGCTAG 58.707 44.000 36.20 36.20 45.38 3.42
4502 8013 6.099990 TCTGTCTACCTTCTTCTAGCTAGCTA 59.900 42.308 22.85 22.85 0.00 3.32
4503 8014 5.104277 TCTGTCTACCTTCTTCTAGCTAGCT 60.104 44.000 23.12 23.12 0.00 3.32
4504 8015 5.127491 TCTGTCTACCTTCTTCTAGCTAGC 58.873 45.833 16.35 6.62 0.00 3.42
4505 8016 7.173218 CAGATCTGTCTACCTTCTTCTAGCTAG 59.827 44.444 15.01 15.01 32.09 3.42
4506 8017 6.995686 CAGATCTGTCTACCTTCTTCTAGCTA 59.004 42.308 14.95 0.00 32.09 3.32
4507 8018 5.827797 CAGATCTGTCTACCTTCTTCTAGCT 59.172 44.000 14.95 0.00 32.09 3.32
4508 8019 5.507315 GCAGATCTGTCTACCTTCTTCTAGC 60.507 48.000 23.38 0.00 32.09 3.42
4509 8020 5.592282 TGCAGATCTGTCTACCTTCTTCTAG 59.408 44.000 23.38 0.00 32.09 2.43
4510 8021 5.510430 TGCAGATCTGTCTACCTTCTTCTA 58.490 41.667 23.38 0.00 32.09 2.10
4511 8022 4.348486 TGCAGATCTGTCTACCTTCTTCT 58.652 43.478 23.38 0.00 32.09 2.85
4512 8023 4.727507 TGCAGATCTGTCTACCTTCTTC 57.272 45.455 23.38 3.35 32.09 2.87
4513 8024 5.247110 TCTTTGCAGATCTGTCTACCTTCTT 59.753 40.000 23.38 0.00 32.09 2.52
4514 8025 4.774726 TCTTTGCAGATCTGTCTACCTTCT 59.225 41.667 23.38 0.00 32.09 2.85
4515 8026 5.078411 TCTTTGCAGATCTGTCTACCTTC 57.922 43.478 23.38 5.27 32.09 3.46
4516 8027 5.426504 CATCTTTGCAGATCTGTCTACCTT 58.573 41.667 23.38 1.91 37.71 3.50
4517 8028 4.141756 CCATCTTTGCAGATCTGTCTACCT 60.142 45.833 23.38 3.18 37.71 3.08
4518 8029 4.125703 CCATCTTTGCAGATCTGTCTACC 58.874 47.826 23.38 7.41 37.71 3.18
4519 8030 5.016051 TCCATCTTTGCAGATCTGTCTAC 57.984 43.478 23.38 7.78 37.71 2.59
4520 8031 4.100653 CCTCCATCTTTGCAGATCTGTCTA 59.899 45.833 23.38 10.28 37.71 2.59
4521 8032 3.118334 CCTCCATCTTTGCAGATCTGTCT 60.118 47.826 23.38 0.45 37.71 3.41
4522 8033 3.204526 CCTCCATCTTTGCAGATCTGTC 58.795 50.000 23.38 15.78 37.71 3.51
4523 8034 2.575279 ACCTCCATCTTTGCAGATCTGT 59.425 45.455 23.38 0.00 37.71 3.41
4524 8035 2.943690 CACCTCCATCTTTGCAGATCTG 59.056 50.000 18.84 18.84 37.71 2.90
4525 8036 2.842496 TCACCTCCATCTTTGCAGATCT 59.158 45.455 0.00 0.00 37.71 2.75
4526 8037 3.272574 TCACCTCCATCTTTGCAGATC 57.727 47.619 0.00 0.00 37.71 2.75
4527 8038 3.726557 TTCACCTCCATCTTTGCAGAT 57.273 42.857 0.00 0.00 40.79 2.90
4528 8039 3.245016 ACATTCACCTCCATCTTTGCAGA 60.245 43.478 0.00 0.00 0.00 4.26
4529 8040 3.087031 ACATTCACCTCCATCTTTGCAG 58.913 45.455 0.00 0.00 0.00 4.41
4530 8041 3.159213 ACATTCACCTCCATCTTTGCA 57.841 42.857 0.00 0.00 0.00 4.08
4531 8042 5.841957 AATACATTCACCTCCATCTTTGC 57.158 39.130 0.00 0.00 0.00 3.68
4532 8043 8.511604 ACTTAATACATTCACCTCCATCTTTG 57.488 34.615 0.00 0.00 0.00 2.77
4533 8044 8.328758 TGACTTAATACATTCACCTCCATCTTT 58.671 33.333 0.00 0.00 0.00 2.52
4534 8045 7.861629 TGACTTAATACATTCACCTCCATCTT 58.138 34.615 0.00 0.00 0.00 2.40
4535 8046 7.437713 TGACTTAATACATTCACCTCCATCT 57.562 36.000 0.00 0.00 0.00 2.90
4536 8047 8.682936 AATGACTTAATACATTCACCTCCATC 57.317 34.615 0.00 0.00 32.26 3.51
4537 8048 8.682936 GAATGACTTAATACATTCACCTCCAT 57.317 34.615 20.17 0.00 46.38 3.41
4545 8056 8.665685 ACGAACCTTGAATGACTTAATACATTC 58.334 33.333 19.13 19.13 46.92 2.67
4546 8057 8.561738 ACGAACCTTGAATGACTTAATACATT 57.438 30.769 6.88 6.88 39.06 2.71
4547 8058 9.832445 ATACGAACCTTGAATGACTTAATACAT 57.168 29.630 0.00 0.00 0.00 2.29
4548 8059 9.093970 CATACGAACCTTGAATGACTTAATACA 57.906 33.333 0.00 0.00 0.00 2.29
4549 8060 8.548721 CCATACGAACCTTGAATGACTTAATAC 58.451 37.037 0.00 0.00 0.00 1.89
4550 8061 8.479689 TCCATACGAACCTTGAATGACTTAATA 58.520 33.333 0.00 0.00 0.00 0.98
4551 8062 7.335627 TCCATACGAACCTTGAATGACTTAAT 58.664 34.615 0.00 0.00 0.00 1.40
4552 8063 6.703319 TCCATACGAACCTTGAATGACTTAA 58.297 36.000 0.00 0.00 0.00 1.85
4553 8064 6.153851 TCTCCATACGAACCTTGAATGACTTA 59.846 38.462 0.00 0.00 0.00 2.24
4554 8065 5.046591 TCTCCATACGAACCTTGAATGACTT 60.047 40.000 0.00 0.00 0.00 3.01
4555 8066 4.466370 TCTCCATACGAACCTTGAATGACT 59.534 41.667 0.00 0.00 0.00 3.41
4556 8067 4.755411 TCTCCATACGAACCTTGAATGAC 58.245 43.478 0.00 0.00 0.00 3.06
4557 8068 5.128663 TGATCTCCATACGAACCTTGAATGA 59.871 40.000 0.00 0.00 0.00 2.57
4558 8069 5.359756 TGATCTCCATACGAACCTTGAATG 58.640 41.667 0.00 0.00 0.00 2.67
4559 8070 5.453903 CCTGATCTCCATACGAACCTTGAAT 60.454 44.000 0.00 0.00 0.00 2.57
4560 8071 4.141937 CCTGATCTCCATACGAACCTTGAA 60.142 45.833 0.00 0.00 0.00 2.69
4561 8072 3.384789 CCTGATCTCCATACGAACCTTGA 59.615 47.826 0.00 0.00 0.00 3.02
4562 8073 3.384789 TCCTGATCTCCATACGAACCTTG 59.615 47.826 0.00 0.00 0.00 3.61
4563 8074 3.643237 TCCTGATCTCCATACGAACCTT 58.357 45.455 0.00 0.00 0.00 3.50
4564 8075 3.314307 TCCTGATCTCCATACGAACCT 57.686 47.619 0.00 0.00 0.00 3.50
4565 8076 3.132289 TGTTCCTGATCTCCATACGAACC 59.868 47.826 0.00 0.00 30.44 3.62
4566 8077 4.098044 TCTGTTCCTGATCTCCATACGAAC 59.902 45.833 0.00 0.00 0.00 3.95
4567 8078 4.278310 TCTGTTCCTGATCTCCATACGAA 58.722 43.478 0.00 0.00 0.00 3.85
4568 8079 3.885901 CTCTGTTCCTGATCTCCATACGA 59.114 47.826 0.00 0.00 0.00 3.43
4569 8080 3.885901 TCTCTGTTCCTGATCTCCATACG 59.114 47.826 0.00 0.00 0.00 3.06
4570 8081 5.860941 TTCTCTGTTCCTGATCTCCATAC 57.139 43.478 0.00 0.00 0.00 2.39
4571 8082 6.385176 ACATTTCTCTGTTCCTGATCTCCATA 59.615 38.462 0.00 0.00 0.00 2.74
4572 8083 5.191323 ACATTTCTCTGTTCCTGATCTCCAT 59.809 40.000 0.00 0.00 0.00 3.41
4573 8084 4.533707 ACATTTCTCTGTTCCTGATCTCCA 59.466 41.667 0.00 0.00 0.00 3.86
4574 8085 5.096443 ACATTTCTCTGTTCCTGATCTCC 57.904 43.478 0.00 0.00 0.00 3.71
4575 8086 7.725251 AGATACATTTCTCTGTTCCTGATCTC 58.275 38.462 0.00 0.00 0.00 2.75
4576 8087 7.673641 AGATACATTTCTCTGTTCCTGATCT 57.326 36.000 0.00 0.00 0.00 2.75
4577 8088 8.637986 ACTAGATACATTTCTCTGTTCCTGATC 58.362 37.037 0.00 0.00 0.00 2.92
4578 8089 8.546083 ACTAGATACATTTCTCTGTTCCTGAT 57.454 34.615 0.00 0.00 0.00 2.90
4579 8090 7.962995 ACTAGATACATTTCTCTGTTCCTGA 57.037 36.000 0.00 0.00 0.00 3.86
4580 8091 8.253810 TGAACTAGATACATTTCTCTGTTCCTG 58.746 37.037 0.00 0.00 37.89 3.86
4581 8092 8.254508 GTGAACTAGATACATTTCTCTGTTCCT 58.745 37.037 0.00 0.00 37.89 3.36
4582 8093 8.254508 AGTGAACTAGATACATTTCTCTGTTCC 58.745 37.037 0.00 8.03 37.89 3.62
4585 8096 8.410141 GCTAGTGAACTAGATACATTTCTCTGT 58.590 37.037 19.39 0.00 46.80 3.41
4586 8097 8.409371 TGCTAGTGAACTAGATACATTTCTCTG 58.591 37.037 19.39 0.00 46.80 3.35
4587 8098 8.526667 TGCTAGTGAACTAGATACATTTCTCT 57.473 34.615 19.39 0.00 46.80 3.10
4588 8099 9.243637 CTTGCTAGTGAACTAGATACATTTCTC 57.756 37.037 19.39 0.86 46.80 2.87
4589 8100 8.754080 ACTTGCTAGTGAACTAGATACATTTCT 58.246 33.333 19.39 0.00 46.80 2.52
4590 8101 8.934507 ACTTGCTAGTGAACTAGATACATTTC 57.065 34.615 19.39 2.09 46.80 2.17
4591 8102 9.155975 CAACTTGCTAGTGAACTAGATACATTT 57.844 33.333 19.39 3.59 46.80 2.32
4592 8103 7.278868 GCAACTTGCTAGTGAACTAGATACATT 59.721 37.037 19.39 5.49 46.80 2.71
4593 8104 6.758886 GCAACTTGCTAGTGAACTAGATACAT 59.241 38.462 19.39 1.77 46.80 2.29
4594 8105 6.100004 GCAACTTGCTAGTGAACTAGATACA 58.900 40.000 19.39 6.87 46.80 2.29
4595 8106 5.520649 GGCAACTTGCTAGTGAACTAGATAC 59.479 44.000 19.39 4.58 46.80 2.24
4596 8107 5.186992 TGGCAACTTGCTAGTGAACTAGATA 59.813 40.000 19.39 6.30 44.28 1.98
4597 8108 4.020218 TGGCAACTTGCTAGTGAACTAGAT 60.020 41.667 19.39 1.07 44.28 1.98
4598 8109 3.323691 TGGCAACTTGCTAGTGAACTAGA 59.676 43.478 19.39 4.16 44.28 2.43
4599 8110 3.664107 TGGCAACTTGCTAGTGAACTAG 58.336 45.455 13.43 12.30 44.28 2.57
4600 8111 3.762407 TGGCAACTTGCTAGTGAACTA 57.238 42.857 13.43 0.00 44.28 2.24
4601 8112 2.638480 TGGCAACTTGCTAGTGAACT 57.362 45.000 13.43 0.00 44.28 3.01
4602 8113 2.618709 ACTTGGCAACTTGCTAGTGAAC 59.381 45.455 13.43 0.00 44.28 3.18
4603 8114 2.930950 ACTTGGCAACTTGCTAGTGAA 58.069 42.857 13.43 0.00 44.28 3.18
4604 8115 2.618241 CAACTTGGCAACTTGCTAGTGA 59.382 45.455 13.43 0.00 44.28 3.41
4605 8116 2.618241 TCAACTTGGCAACTTGCTAGTG 59.382 45.455 13.43 7.29 44.28 2.74
4606 8117 2.880890 CTCAACTTGGCAACTTGCTAGT 59.119 45.455 13.43 13.26 44.28 2.57
4607 8118 2.351157 GCTCAACTTGGCAACTTGCTAG 60.351 50.000 13.43 12.70 44.28 3.42
4608 8119 1.608590 GCTCAACTTGGCAACTTGCTA 59.391 47.619 13.43 4.61 44.28 3.49
4609 8120 0.386838 GCTCAACTTGGCAACTTGCT 59.613 50.000 13.43 0.00 44.28 3.91
4610 8121 0.936297 CGCTCAACTTGGCAACTTGC 60.936 55.000 12.90 5.08 44.08 4.01
4611 8122 0.662619 TCGCTCAACTTGGCAACTTG 59.337 50.000 11.85 11.85 37.61 3.16
4612 8123 0.947244 CTCGCTCAACTTGGCAACTT 59.053 50.000 0.00 0.00 37.61 2.66
4613 8124 0.179045 ACTCGCTCAACTTGGCAACT 60.179 50.000 0.00 0.00 37.61 3.16
4614 8125 1.508632 TACTCGCTCAACTTGGCAAC 58.491 50.000 0.00 0.00 0.00 4.17
4615 8126 1.871039 GTTACTCGCTCAACTTGGCAA 59.129 47.619 0.00 0.00 0.00 4.52
4616 8127 1.202592 TGTTACTCGCTCAACTTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
4617 8128 1.194772 GTGTTACTCGCTCAACTTGGC 59.805 52.381 0.00 0.00 0.00 4.52
4618 8129 2.755650 AGTGTTACTCGCTCAACTTGG 58.244 47.619 0.00 0.00 30.20 3.61
4619 8130 4.201628 GCATAGTGTTACTCGCTCAACTTG 60.202 45.833 0.00 0.00 38.01 3.16
4620 8131 3.927142 GCATAGTGTTACTCGCTCAACTT 59.073 43.478 0.00 0.00 38.01 2.66
4621 8132 3.056821 TGCATAGTGTTACTCGCTCAACT 60.057 43.478 0.00 0.00 38.01 3.16
4622 8133 3.250744 TGCATAGTGTTACTCGCTCAAC 58.749 45.455 0.00 0.00 38.01 3.18
4623 8134 3.586100 TGCATAGTGTTACTCGCTCAA 57.414 42.857 0.00 0.00 38.01 3.02
4624 8135 3.586100 TTGCATAGTGTTACTCGCTCA 57.414 42.857 0.00 0.00 38.01 4.26
4625 8136 5.470845 AAATTGCATAGTGTTACTCGCTC 57.529 39.130 0.00 0.00 38.01 5.03
4626 8137 6.036083 CACTAAATTGCATAGTGTTACTCGCT 59.964 38.462 15.03 0.00 43.31 4.93
4627 8138 6.185399 CACTAAATTGCATAGTGTTACTCGC 58.815 40.000 15.03 0.00 43.31 5.03
4668 8179 1.233019 CAGTGCCTGCATATAGCCAC 58.767 55.000 0.00 0.00 44.83 5.01
4712 8223 1.411977 CCTCCATCTTCGCAGATCTGT 59.588 52.381 23.38 0.00 37.71 3.41
4759 8270 7.072202 ACATTTCTCTGTTCCTGATCTCCATAT 59.928 37.037 0.00 0.00 0.00 1.78
4847 8358 1.334689 CCGCGATCAGCTACGAACATA 60.335 52.381 8.23 0.00 45.59 2.29
4854 8365 1.792949 CCAATAACCGCGATCAGCTAC 59.207 52.381 8.23 0.00 45.59 3.58
4894 8406 5.163903 CGGTCATTGACAAATTCACGACATA 60.164 40.000 18.09 0.00 38.12 2.29
4899 8411 3.804518 TCGGTCATTGACAAATTCACG 57.195 42.857 18.09 10.36 32.26 4.35
4900 8412 5.277825 TGTTTCGGTCATTGACAAATTCAC 58.722 37.500 18.09 7.42 32.26 3.18
4901 8413 5.506686 TGTTTCGGTCATTGACAAATTCA 57.493 34.783 18.09 8.63 33.68 2.57
4917 8429 6.007936 TGGTACCAAGATCAAATTGTTTCG 57.992 37.500 13.60 0.00 0.00 3.46
4926 8438 9.832445 GATTTAGAACTATGGTACCAAGATCAA 57.168 33.333 20.76 12.24 0.00 2.57
4944 8456 6.985117 AGCACTGCTGAATTTTGATTTAGAA 58.015 32.000 1.67 0.00 37.57 2.10
4952 8464 9.955208 TGAATAATATAGCACTGCTGAATTTTG 57.045 29.630 14.15 0.00 40.10 2.44
4957 8470 8.830580 GTTCTTGAATAATATAGCACTGCTGAA 58.169 33.333 14.15 1.74 40.10 3.02
5030 8544 3.996150 CACATGGTGGCAATTAGGATC 57.004 47.619 0.00 0.00 0.00 3.36
5079 8593 5.886960 AAGAGAACTATTGTGGTCAATGC 57.113 39.130 4.06 0.00 43.17 3.56
5142 8656 6.821616 ATTCCATATCTGACCTCTTGTTCT 57.178 37.500 0.00 0.00 0.00 3.01
5143 8657 7.659390 CCTAATTCCATATCTGACCTCTTGTTC 59.341 40.741 0.00 0.00 0.00 3.18
5144 8658 7.127955 ACCTAATTCCATATCTGACCTCTTGTT 59.872 37.037 0.00 0.00 0.00 2.83
5145 8659 6.617371 ACCTAATTCCATATCTGACCTCTTGT 59.383 38.462 0.00 0.00 0.00 3.16
5146 8660 7.072263 ACCTAATTCCATATCTGACCTCTTG 57.928 40.000 0.00 0.00 0.00 3.02
5147 8661 7.420680 CCAACCTAATTCCATATCTGACCTCTT 60.421 40.741 0.00 0.00 0.00 2.85
5148 8662 6.043706 CCAACCTAATTCCATATCTGACCTCT 59.956 42.308 0.00 0.00 0.00 3.69
5149 8663 6.183361 ACCAACCTAATTCCATATCTGACCTC 60.183 42.308 0.00 0.00 0.00 3.85
5177 8692 2.002586 CTCAACTGCCGATGGTTAGTG 58.997 52.381 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.