Multiple sequence alignment - TraesCS7D01G209100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G209100 chr7D 100.000 7506 0 0 1 7506 167355804 167363309 0.000000e+00 13862.0
1 TraesCS7D01G209100 chr7D 83.516 91 6 8 3509 3590 350100473 350100563 8.080000e-10 76.8
2 TraesCS7D01G209100 chr7D 100.000 32 0 0 7341 7372 97935407 97935438 8.130000e-05 60.2
3 TraesCS7D01G209100 chr7A 95.866 3483 66 22 2822 6237 168871336 168874807 0.000000e+00 5563.0
4 TraesCS7D01G209100 chr7A 93.843 2420 107 22 319 2723 168868933 168871325 0.000000e+00 3605.0
5 TraesCS7D01G209100 chr7A 95.955 618 23 2 6267 6884 168874803 168875418 0.000000e+00 1002.0
6 TraesCS7D01G209100 chr7A 84.375 288 38 4 1 282 168868645 168868931 7.420000e-70 276.0
7 TraesCS7D01G209100 chr7A 93.939 165 8 2 6936 7099 168875421 168875584 1.620000e-61 248.0
8 TraesCS7D01G209100 chr7A 87.324 142 2 2 7381 7506 168875840 168875981 1.690000e-31 148.0
9 TraesCS7D01G209100 chr7A 92.857 42 2 1 5781 5821 168874419 168874378 8.130000e-05 60.2
10 TraesCS7D01G209100 chr7B 92.171 2133 110 25 613 2734 131738868 131740954 0.000000e+00 2961.0
11 TraesCS7D01G209100 chr7B 94.380 1299 59 9 3800 5086 131741816 131743112 0.000000e+00 1982.0
12 TraesCS7D01G209100 chr7B 90.431 951 35 17 5322 6242 131744139 131745063 0.000000e+00 1201.0
13 TraesCS7D01G209100 chr7B 92.072 719 22 12 2820 3521 131740952 131741652 0.000000e+00 979.0
14 TraesCS7D01G209100 chr7B 90.022 461 32 7 6282 6729 131745193 131745652 1.090000e-162 584.0
15 TraesCS7D01G209100 chr7B 85.036 421 32 23 214 616 131738434 131738841 4.220000e-107 399.0
16 TraesCS7D01G209100 chr7B 88.182 220 10 4 5120 5325 131743109 131743326 1.620000e-61 248.0
17 TraesCS7D01G209100 chr7B 94.690 113 5 1 5312 5423 131744025 131744137 2.780000e-39 174.0
18 TraesCS7D01G209100 chr7B 96.471 85 3 0 2744 2828 652980493 652980409 2.820000e-29 141.0
19 TraesCS7D01G209100 chr7B 88.596 114 10 1 5215 5325 131743848 131743961 1.310000e-27 135.0
20 TraesCS7D01G209100 chr7B 85.821 134 12 3 7379 7506 131747657 131747789 1.310000e-27 135.0
21 TraesCS7D01G209100 chr7B 92.308 91 5 2 2744 2833 715683186 715683097 2.200000e-25 128.0
22 TraesCS7D01G209100 chr7B 100.000 35 0 0 5181 5215 131743800 131743834 1.750000e-06 65.8
23 TraesCS7D01G209100 chr3D 97.647 85 1 1 3718 3801 66406772 66406688 2.180000e-30 145.0
24 TraesCS7D01G209100 chr3D 85.882 85 5 7 3510 3587 579731338 579731254 4.830000e-12 84.2
25 TraesCS7D01G209100 chr3D 87.838 74 5 2 3513 3582 598019504 598019577 4.830000e-12 84.2
26 TraesCS7D01G209100 chr3D 80.769 104 11 8 3502 3597 26654116 26654218 1.040000e-08 73.1
27 TraesCS7D01G209100 chr3B 95.556 90 2 2 3718 3805 738379694 738379783 7.850000e-30 143.0
28 TraesCS7D01G209100 chr3B 92.079 101 4 4 2744 2842 261980638 261980736 1.020000e-28 139.0
29 TraesCS7D01G209100 chr6B 96.512 86 2 1 3717 3801 71040855 71040770 2.820000e-29 141.0
30 TraesCS7D01G209100 chr6B 93.421 76 4 1 3513 3587 177271171 177271246 2.210000e-20 111.0
31 TraesCS7D01G209100 chr6B 93.023 43 2 1 5783 5824 599053087 599053045 2.260000e-05 62.1
32 TraesCS7D01G209100 chr6A 92.708 96 4 3 2730 2824 592530826 592530733 1.310000e-27 135.0
33 TraesCS7D01G209100 chr2B 90.476 105 6 4 2744 2847 785216415 785216314 1.310000e-27 135.0
34 TraesCS7D01G209100 chr2B 92.308 91 5 2 2744 2833 95606687 95606598 2.200000e-25 128.0
35 TraesCS7D01G209100 chr5D 95.294 85 3 1 3717 3801 548633984 548634067 4.720000e-27 134.0
36 TraesCS7D01G209100 chr5D 83.696 92 6 8 3511 3593 527158575 527158666 2.250000e-10 78.7
37 TraesCS7D01G209100 chr5D 86.000 50 5 1 5775 5822 448101921 448101970 1.400000e-02 52.8
38 TraesCS7D01G209100 chr5A 94.318 88 3 2 3716 3801 688702452 688702539 4.720000e-27 134.0
39 TraesCS7D01G209100 chr2A 93.478 92 3 3 3714 3804 115749924 115749835 4.720000e-27 134.0
40 TraesCS7D01G209100 chr1B 95.238 84 4 0 3718 3801 42252396 42252479 4.720000e-27 134.0
41 TraesCS7D01G209100 chr1B 89.423 104 11 0 2744 2847 400585495 400585392 1.700000e-26 132.0
42 TraesCS7D01G209100 chr1B 94.595 37 2 0 5785 5821 674035877 674035913 2.930000e-04 58.4
43 TraesCS7D01G209100 chr4B 87.719 114 8 6 2723 2833 27604741 27604851 2.200000e-25 128.0
44 TraesCS7D01G209100 chr4B 86.275 51 7 0 7332 7382 172763002 172763052 1.000000e-03 56.5
45 TraesCS7D01G209100 chr4A 92.308 91 5 2 2744 2833 676038459 676038370 2.200000e-25 128.0
46 TraesCS7D01G209100 chr4A 100.000 32 0 0 7351 7382 717963169 717963200 8.130000e-05 60.2
47 TraesCS7D01G209100 chr6D 95.062 81 3 1 3722 3801 352881696 352881776 7.910000e-25 126.0
48 TraesCS7D01G209100 chr6D 93.421 76 4 1 3513 3587 95724691 95724616 2.210000e-20 111.0
49 TraesCS7D01G209100 chr5B 82.828 99 11 4 3514 3608 617191347 617191443 4.830000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G209100 chr7D 167355804 167363309 7505 False 13862.0 13862 100.000000 1 7506 1 chr7D.!!$F2 7505
1 TraesCS7D01G209100 chr7A 168868645 168875981 7336 False 1807.0 5563 91.883667 1 7506 6 chr7A.!!$F1 7505
2 TraesCS7D01G209100 chr7B 131738434 131747789 9355 False 805.8 2961 91.036455 214 7506 11 chr7B.!!$F1 7292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 560 0.035247 GGTACGCCCACCCAACATAA 60.035 55.000 0.0 0.0 31.91 1.90 F
1409 1469 0.108992 GTAGTCGACATGTGCCGGAA 60.109 55.000 19.5 0.0 0.00 4.30 F
2748 2817 0.038744 TCTACTCCCTCCGTTCCGTT 59.961 55.000 0.0 0.0 0.00 4.44 F
2749 2818 0.455005 CTACTCCCTCCGTTCCGTTC 59.545 60.000 0.0 0.0 0.00 3.95 F
2754 2823 0.535553 CCCTCCGTTCCGTTCCAAAA 60.536 55.000 0.0 0.0 0.00 2.44 F
2755 2824 1.530323 CCTCCGTTCCGTTCCAAAAT 58.470 50.000 0.0 0.0 0.00 1.82 F
3528 3629 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.0 0.0 0.00 4.37 F
4332 4464 2.728690 TTTGGCATCAGCACATGTTC 57.271 45.000 0.0 0.0 44.61 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1514 1575 2.055689 CTTGACCTCACCCACCTGCA 62.056 60.000 0.00 0.00 0.00 4.41 R
2804 2873 0.115745 AGGTACTCCCTCCGTTCCAA 59.884 55.000 0.00 0.00 40.71 3.53 R
4307 4439 1.818060 TGTGCTGATGCCAAATACACC 59.182 47.619 0.00 0.00 38.71 4.16 R
4746 4880 6.399639 TCCCTCCAGATTTTGTACAAAAAC 57.600 37.500 31.40 28.33 42.71 2.43 R
4960 5094 0.543277 CATTAGGCCCTGCAGAGACA 59.457 55.000 17.39 0.00 0.00 3.41 R
5325 6191 3.620488 TGCTATGATTTTCCCTCCACAC 58.380 45.455 0.00 0.00 0.00 3.82 R
5561 6521 2.999063 GCACCAGCATTTGCCCCT 60.999 61.111 0.00 0.00 43.38 4.79 R
6831 7934 0.107831 TGTGGAAACTCCTTGTCCCG 59.892 55.000 0.00 0.00 37.46 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.677875 CCTCCAGTGCAAAGCCCC 60.678 66.667 0.00 0.00 0.00 5.80
22 23 3.506743 TCCAGTGCAAAGCCCCCA 61.507 61.111 0.00 0.00 0.00 4.96
24 25 2.521465 CAGTGCAAAGCCCCCACA 60.521 61.111 0.00 0.00 32.09 4.17
25 26 1.909781 CAGTGCAAAGCCCCCACAT 60.910 57.895 0.00 0.00 32.09 3.21
28 29 2.283821 GCAAAGCCCCCACATCCA 60.284 61.111 0.00 0.00 0.00 3.41
30 31 1.077265 CAAAGCCCCCACATCCACT 59.923 57.895 0.00 0.00 0.00 4.00
31 32 0.542702 CAAAGCCCCCACATCCACTT 60.543 55.000 0.00 0.00 0.00 3.16
35 40 0.550914 GCCCCCACATCCACTTATCA 59.449 55.000 0.00 0.00 0.00 2.15
37 42 2.622977 GCCCCCACATCCACTTATCAAA 60.623 50.000 0.00 0.00 0.00 2.69
50 55 2.644555 TATCAAAGCGAGGCGGCTCC 62.645 60.000 30.76 22.92 43.93 4.70
58 63 3.710722 AGGCGGCTCCTCTGTTGG 61.711 66.667 5.25 0.00 43.20 3.77
66 71 1.003580 GCTCCTCTGTTGGTTCATGGA 59.996 52.381 0.00 0.00 0.00 3.41
92 97 3.044305 GCTGGAGCACCACACGTC 61.044 66.667 0.00 0.00 41.77 4.34
112 117 0.179108 GGCGACGAGAAGGCTACAAT 60.179 55.000 0.00 0.00 0.00 2.71
120 125 0.811281 GAAGGCTACAATGCACCACC 59.189 55.000 0.00 0.00 34.04 4.61
129 134 0.478072 AATGCACCACCCACTCTGAA 59.522 50.000 0.00 0.00 0.00 3.02
161 166 4.545706 CATGGCTTCCCGCGGCTA 62.546 66.667 22.85 7.04 40.44 3.93
164 169 4.468689 GGCTTCCCGCGGCTACTT 62.469 66.667 22.85 0.00 40.44 2.24
167 172 3.665675 CTTCCCGCGGCTACTTGCT 62.666 63.158 22.85 0.00 42.39 3.91
177 182 0.817229 GCTACTTGCTGGGATCTGGC 60.817 60.000 0.00 0.00 38.95 4.85
178 183 0.179034 CTACTTGCTGGGATCTGGCC 60.179 60.000 0.00 0.00 0.00 5.36
193 198 2.801631 GGCCGGGAGAGTGATGAGG 61.802 68.421 2.18 0.00 0.00 3.86
195 200 2.136878 CCGGGAGAGTGATGAGGGG 61.137 68.421 0.00 0.00 0.00 4.79
196 201 2.136878 CGGGAGAGTGATGAGGGGG 61.137 68.421 0.00 0.00 0.00 5.40
251 257 1.182385 GGGTCAGCCGAGATAGAGGG 61.182 65.000 0.00 0.00 34.97 4.30
264 270 1.888436 TAGAGGGTGCCAAGCTGTCG 61.888 60.000 0.00 0.00 0.00 4.35
288 294 1.098712 TTCGTGTGGGTGCCAGTTTC 61.099 55.000 0.00 0.00 32.34 2.78
292 298 0.179020 TGTGGGTGCCAGTTTCAGAG 60.179 55.000 0.00 0.00 32.34 3.35
293 299 0.108585 GTGGGTGCCAGTTTCAGAGA 59.891 55.000 0.00 0.00 32.34 3.10
294 300 0.843309 TGGGTGCCAGTTTCAGAGAA 59.157 50.000 0.00 0.00 0.00 2.87
296 302 0.868406 GGTGCCAGTTTCAGAGAACG 59.132 55.000 0.00 0.00 34.74 3.95
297 303 0.235926 GTGCCAGTTTCAGAGAACGC 59.764 55.000 0.00 0.00 34.74 4.84
298 304 0.106708 TGCCAGTTTCAGAGAACGCT 59.893 50.000 0.00 0.00 34.74 5.07
300 306 1.195674 GCCAGTTTCAGAGAACGCTTC 59.804 52.381 0.00 0.00 34.74 3.86
301 307 2.760374 CCAGTTTCAGAGAACGCTTCT 58.240 47.619 0.71 0.71 44.21 2.85
302 308 3.134458 CCAGTTTCAGAGAACGCTTCTT 58.866 45.455 2.51 0.00 40.87 2.52
303 309 4.307432 CCAGTTTCAGAGAACGCTTCTTA 58.693 43.478 2.51 0.00 40.87 2.10
304 310 4.932200 CCAGTTTCAGAGAACGCTTCTTAT 59.068 41.667 2.51 0.00 40.87 1.73
305 311 5.163913 CCAGTTTCAGAGAACGCTTCTTATG 60.164 44.000 2.51 5.25 40.87 1.90
306 312 5.635280 CAGTTTCAGAGAACGCTTCTTATGA 59.365 40.000 2.51 6.95 40.87 2.15
307 313 6.312426 CAGTTTCAGAGAACGCTTCTTATGAT 59.688 38.462 12.64 0.00 40.87 2.45
308 314 7.489435 CAGTTTCAGAGAACGCTTCTTATGATA 59.511 37.037 12.64 8.58 40.87 2.15
309 315 8.200792 AGTTTCAGAGAACGCTTCTTATGATAT 58.799 33.333 12.64 0.00 40.87 1.63
334 340 2.771089 TGGCAACACTCTCTGCTTTAG 58.229 47.619 0.00 0.00 46.17 1.85
377 383 3.944233 GTTGGCGCGTTCGTTGGT 61.944 61.111 8.43 0.00 38.14 3.67
553 560 0.035247 GGTACGCCCACCCAACATAA 60.035 55.000 0.00 0.00 31.91 1.90
573 596 2.030562 GTGACCCCCACACGTCAG 59.969 66.667 0.00 0.00 45.03 3.51
706 761 3.812019 CCTCCCGACTCGACACCG 61.812 72.222 0.00 0.00 37.07 4.94
709 764 3.677648 CCCGACTCGACACCGGTT 61.678 66.667 2.97 0.00 41.53 4.44
710 765 2.334946 CCCGACTCGACACCGGTTA 61.335 63.158 2.97 0.00 41.53 2.85
726 781 0.111639 GTTACCCTCCCACTGGCAAA 59.888 55.000 0.00 0.00 0.00 3.68
727 782 1.080638 TTACCCTCCCACTGGCAAAT 58.919 50.000 0.00 0.00 0.00 2.32
954 1009 3.681593 AGCGAGAGTCAGATAGGGATAC 58.318 50.000 0.00 0.00 0.00 2.24
1151 1210 0.373370 CGGCAATTCGCTTGATTCGA 59.627 50.000 2.21 0.00 41.91 3.71
1312 1372 0.645868 GTAGATCGGTCGCAACTTGC 59.354 55.000 3.44 3.44 40.69 4.01
1405 1465 1.533338 CGGTAGTAGTCGACATGTGCC 60.533 57.143 19.50 12.55 0.00 5.01
1409 1469 0.108992 GTAGTCGACATGTGCCGGAA 60.109 55.000 19.50 0.00 0.00 4.30
1469 1530 1.120184 TTGGGGCTGCAATGCTTGAA 61.120 50.000 6.82 0.00 0.00 2.69
1502 1563 5.535406 TCACTAGTACTAATCTGCTTAGGGC 59.465 44.000 3.76 0.00 41.07 5.19
1514 1575 1.889170 GCTTAGGGCTTGCTCTGTTTT 59.111 47.619 5.10 0.00 38.06 2.43
1563 1624 1.130054 AGAGTGCTCAGGGGCAGAAA 61.130 55.000 0.00 0.00 43.25 2.52
1714 1775 5.617087 GCTTCTTGTCCCGTTAGTTTGAATC 60.617 44.000 0.00 0.00 0.00 2.52
1730 1791 3.914312 TGAATCGTCAGTTCTCCAACTC 58.086 45.455 0.00 0.00 41.24 3.01
1744 1805 8.409371 AGTTCTCCAACTCTTGAAGAATTTTTC 58.591 33.333 1.81 1.81 38.62 2.29
1890 1956 8.964476 TTCATTACCTTGATCTGTAATCCTTC 57.036 34.615 10.80 0.00 35.93 3.46
1916 1982 6.980051 AATTTGACGGACCTTATTAGACAC 57.020 37.500 0.00 0.00 0.00 3.67
1923 1989 4.868734 CGGACCTTATTAGACACCAAGTTC 59.131 45.833 0.00 0.00 0.00 3.01
1925 1991 5.875359 GGACCTTATTAGACACCAAGTTCTG 59.125 44.000 0.00 0.00 0.00 3.02
2046 2112 4.352039 ACGTTGAGCTGTAATCATAGACG 58.648 43.478 0.00 0.00 0.00 4.18
2157 2223 3.659183 AGCCTGCTAATTGGATGAAGT 57.341 42.857 0.00 0.00 0.00 3.01
2197 2263 6.127810 AGTGATTTCATTCATGTGGATTCG 57.872 37.500 0.00 0.00 0.00 3.34
2298 2364 6.735678 TGTTAAGCGCTTCTCAATCAAATA 57.264 33.333 28.82 8.17 0.00 1.40
2396 2462 4.608948 TTCGGCCATGGTATTTTGTTTT 57.391 36.364 14.67 0.00 0.00 2.43
2565 2631 6.699575 ATCATTATAAGTTGGTGCCAGAAC 57.300 37.500 0.00 0.00 0.00 3.01
2602 2668 8.897752 AGATTTAAATGGCTGTTATCTTCTGAC 58.102 33.333 5.17 0.00 0.00 3.51
2613 2679 7.526860 GCTGTTATCTTCTGACCTGGATATCAT 60.527 40.741 0.00 0.00 0.00 2.45
2619 2685 8.324191 TCTTCTGACCTGGATATCATTAACTT 57.676 34.615 0.00 0.00 0.00 2.66
2620 2686 9.434275 TCTTCTGACCTGGATATCATTAACTTA 57.566 33.333 0.00 0.00 0.00 2.24
2628 2694 9.553064 CCTGGATATCATTAACTTATATCTGGC 57.447 37.037 4.83 0.00 34.45 4.85
2723 2792 6.150474 AGGTATTCTGGGTTCATACGTTTTTG 59.850 38.462 0.00 0.00 0.00 2.44
2725 2794 7.119553 GGTATTCTGGGTTCATACGTTTTTGTA 59.880 37.037 0.00 0.00 0.00 2.41
2734 2803 9.148104 GGTTCATACGTTTTTGTAAGATCTACT 57.852 33.333 0.00 0.00 0.00 2.57
2736 2805 8.922058 TCATACGTTTTTGTAAGATCTACTCC 57.078 34.615 0.00 0.00 0.00 3.85
2737 2806 7.977853 TCATACGTTTTTGTAAGATCTACTCCC 59.022 37.037 0.00 0.00 0.00 4.30
2738 2807 6.356186 ACGTTTTTGTAAGATCTACTCCCT 57.644 37.500 0.00 0.00 0.00 4.20
2739 2808 6.396450 ACGTTTTTGTAAGATCTACTCCCTC 58.604 40.000 0.00 0.00 0.00 4.30
2740 2809 5.811100 CGTTTTTGTAAGATCTACTCCCTCC 59.189 44.000 0.00 0.00 0.00 4.30
2741 2810 5.593679 TTTTGTAAGATCTACTCCCTCCG 57.406 43.478 0.00 0.00 0.00 4.63
2742 2811 3.947612 TGTAAGATCTACTCCCTCCGT 57.052 47.619 0.00 0.00 0.00 4.69
2743 2812 4.246712 TGTAAGATCTACTCCCTCCGTT 57.753 45.455 0.00 0.00 0.00 4.44
2744 2813 4.205587 TGTAAGATCTACTCCCTCCGTTC 58.794 47.826 0.00 0.00 0.00 3.95
2745 2814 2.368311 AGATCTACTCCCTCCGTTCC 57.632 55.000 0.00 0.00 0.00 3.62
2746 2815 0.953003 GATCTACTCCCTCCGTTCCG 59.047 60.000 0.00 0.00 0.00 4.30
2747 2816 0.258194 ATCTACTCCCTCCGTTCCGT 59.742 55.000 0.00 0.00 0.00 4.69
2748 2817 0.038744 TCTACTCCCTCCGTTCCGTT 59.961 55.000 0.00 0.00 0.00 4.44
2749 2818 0.455005 CTACTCCCTCCGTTCCGTTC 59.545 60.000 0.00 0.00 0.00 3.95
2750 2819 0.967380 TACTCCCTCCGTTCCGTTCC 60.967 60.000 0.00 0.00 0.00 3.62
2751 2820 2.203669 TCCCTCCGTTCCGTTCCA 60.204 61.111 0.00 0.00 0.00 3.53
2752 2821 1.823169 CTCCCTCCGTTCCGTTCCAA 61.823 60.000 0.00 0.00 0.00 3.53
2753 2822 1.071814 CCCTCCGTTCCGTTCCAAA 59.928 57.895 0.00 0.00 0.00 3.28
2754 2823 0.535553 CCCTCCGTTCCGTTCCAAAA 60.536 55.000 0.00 0.00 0.00 2.44
2755 2824 1.530323 CCTCCGTTCCGTTCCAAAAT 58.470 50.000 0.00 0.00 0.00 1.82
2756 2825 2.616001 CCCTCCGTTCCGTTCCAAAATA 60.616 50.000 0.00 0.00 0.00 1.40
2757 2826 2.676342 CCTCCGTTCCGTTCCAAAATAG 59.324 50.000 0.00 0.00 0.00 1.73
2758 2827 3.592059 CTCCGTTCCGTTCCAAAATAGA 58.408 45.455 0.00 0.00 0.00 1.98
2759 2828 3.998341 CTCCGTTCCGTTCCAAAATAGAA 59.002 43.478 0.00 0.00 0.00 2.10
2760 2829 3.998341 TCCGTTCCGTTCCAAAATAGAAG 59.002 43.478 0.00 0.00 0.00 2.85
2761 2830 3.998341 CCGTTCCGTTCCAAAATAGAAGA 59.002 43.478 0.00 0.00 0.00 2.87
2762 2831 4.142966 CCGTTCCGTTCCAAAATAGAAGAC 60.143 45.833 0.00 0.00 0.00 3.01
2763 2832 4.689345 CGTTCCGTTCCAAAATAGAAGACT 59.311 41.667 0.00 0.00 0.00 3.24
2764 2833 5.163982 CGTTCCGTTCCAAAATAGAAGACTC 60.164 44.000 0.00 0.00 0.00 3.36
2765 2834 5.477607 TCCGTTCCAAAATAGAAGACTCA 57.522 39.130 0.00 0.00 0.00 3.41
2766 2835 5.860611 TCCGTTCCAAAATAGAAGACTCAA 58.139 37.500 0.00 0.00 0.00 3.02
2767 2836 5.699458 TCCGTTCCAAAATAGAAGACTCAAC 59.301 40.000 0.00 0.00 0.00 3.18
2768 2837 5.701290 CCGTTCCAAAATAGAAGACTCAACT 59.299 40.000 0.00 0.00 0.00 3.16
2769 2838 6.204882 CCGTTCCAAAATAGAAGACTCAACTT 59.795 38.462 0.00 0.00 0.00 2.66
2770 2839 7.255139 CCGTTCCAAAATAGAAGACTCAACTTT 60.255 37.037 0.00 0.00 0.00 2.66
2771 2840 7.587757 CGTTCCAAAATAGAAGACTCAACTTTG 59.412 37.037 0.00 0.00 0.00 2.77
2772 2841 8.406297 GTTCCAAAATAGAAGACTCAACTTTGT 58.594 33.333 0.00 0.00 0.00 2.83
2773 2842 9.621629 TTCCAAAATAGAAGACTCAACTTTGTA 57.378 29.630 0.00 0.00 0.00 2.41
2774 2843 9.052759 TCCAAAATAGAAGACTCAACTTTGTAC 57.947 33.333 0.00 0.00 0.00 2.90
2775 2844 9.057089 CCAAAATAGAAGACTCAACTTTGTACT 57.943 33.333 0.00 0.00 0.00 2.73
2782 2851 9.968870 AGAAGACTCAACTTTGTACTAACTTAG 57.031 33.333 0.00 0.00 0.00 2.18
2783 2852 9.747293 GAAGACTCAACTTTGTACTAACTTAGT 57.253 33.333 6.68 6.68 42.68 2.24
2797 2866 7.128234 ACTAACTTAGTACAAAGTTGGGTCA 57.872 36.000 14.60 0.00 46.44 4.02
2798 2867 7.742767 ACTAACTTAGTACAAAGTTGGGTCAT 58.257 34.615 14.60 0.00 46.44 3.06
2799 2868 7.876582 ACTAACTTAGTACAAAGTTGGGTCATC 59.123 37.037 14.60 0.00 46.44 2.92
2800 2869 6.435292 ACTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 36.26 2.90
2801 2870 7.549147 ACTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 36.26 1.98
2802 2871 8.147244 ACTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 36.26 1.98
2803 2872 8.603304 ACTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 36.26 1.73
2804 2873 9.449719 CTTAGTACAAAGTTGGGTCATCTATTT 57.550 33.333 0.00 0.00 0.00 1.40
2805 2874 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2806 2875 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2807 2876 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2808 2877 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2809 2878 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2810 2879 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2811 2880 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2812 2881 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2813 2882 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2814 2883 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2815 2884 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2816 2885 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2817 2886 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2818 2887 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2819 2888 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2820 2889 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2912 2982 2.858787 TTCCACCTGGTTTCCCTTTT 57.141 45.000 0.00 0.00 36.34 2.27
2913 2983 2.858787 TCCACCTGGTTTCCCTTTTT 57.141 45.000 0.00 0.00 36.34 1.94
3065 3158 6.420913 ACCTGAGAAATGTGTGTTACTAGT 57.579 37.500 0.00 0.00 0.00 2.57
3528 3629 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
3533 3634 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
3700 3812 3.457234 TCATATGGTCGCTTGTCATGTC 58.543 45.455 2.13 0.00 0.00 3.06
3881 3994 5.918576 CAGCATGCACAGTTTATATCATTGG 59.081 40.000 21.98 0.00 0.00 3.16
4234 4366 8.065473 TGCATAGGTTCATACATTGATTTTGT 57.935 30.769 0.00 0.00 33.34 2.83
4284 4416 7.259290 TCTGAATGTGTAGACTTCAAAAACC 57.741 36.000 6.44 0.00 0.00 3.27
4307 4439 4.672542 CGGCAGTTCATTCTATGTGTTTGG 60.673 45.833 0.00 0.00 0.00 3.28
4332 4464 2.728690 TTTGGCATCAGCACATGTTC 57.271 45.000 0.00 0.00 44.61 3.18
4416 4548 3.194062 GAGCCAGAAAGAATCTTCCTCG 58.806 50.000 0.00 0.00 35.73 4.63
4576 4709 3.577848 TCCAACAAATTCTTGACATGGGG 59.422 43.478 0.00 0.00 36.18 4.96
4746 4880 5.412640 TGCCTTTCATTATGTGCTCAATTG 58.587 37.500 0.00 0.00 0.00 2.32
5325 6191 3.486383 TGAAGCTAAAAGTTGGTCCCTG 58.514 45.455 0.00 0.00 0.00 4.45
5533 6493 5.705905 ACTCCTTTGGCTAGTTTTGATACAC 59.294 40.000 0.00 0.00 0.00 2.90
5561 6521 4.847512 TCTTAACAGGGTATTCCAAGTGGA 59.152 41.667 0.00 0.00 43.73 4.02
5806 6766 8.422566 AGTACCCTATGCAAACTTCTATAAGAC 58.577 37.037 0.00 0.00 36.50 3.01
5824 6784 9.500864 CTATAAGACGTTTTAGGTCACTACTTC 57.499 37.037 4.75 0.00 35.60 3.01
5943 6921 2.158325 AGAGCTGGGGAAACAAAATCCA 60.158 45.455 0.00 0.00 38.80 3.41
6232 7219 8.195617 TGATTTGCTTTCTTTGTAAAACCTTG 57.804 30.769 0.00 0.00 0.00 3.61
6242 7229 8.927675 TCTTTGTAAAACCTTGCCTATTTCTA 57.072 30.769 0.00 0.00 0.00 2.10
6243 7230 9.357161 TCTTTGTAAAACCTTGCCTATTTCTAA 57.643 29.630 0.00 0.00 0.00 2.10
6244 7231 9.974980 CTTTGTAAAACCTTGCCTATTTCTAAA 57.025 29.630 0.00 0.00 0.00 1.85
6246 7233 9.921637 TTGTAAAACCTTGCCTATTTCTAAATG 57.078 29.630 0.00 0.00 0.00 2.32
6247 7234 9.084533 TGTAAAACCTTGCCTATTTCTAAATGT 57.915 29.630 0.00 0.00 0.00 2.71
6463 7555 2.097825 GATGAAGAACTGGCTGCCAAT 58.902 47.619 23.51 10.52 30.80 3.16
6557 7649 3.577848 AGAAGAGTCAGTGACAGAAGCAT 59.422 43.478 24.73 2.17 34.60 3.79
6559 7651 4.348863 AGAGTCAGTGACAGAAGCATTT 57.651 40.909 24.73 0.62 34.60 2.32
6601 7693 8.543862 TTATATCTTGCTGCTGAATATCACTG 57.456 34.615 0.00 0.00 0.00 3.66
6619 7714 1.672881 CTGCTACTTGCCATTAGTGCC 59.327 52.381 0.00 0.00 42.00 5.01
6620 7715 1.281867 TGCTACTTGCCATTAGTGCCT 59.718 47.619 0.00 0.00 42.00 4.75
6737 7840 8.567948 TCTTTCTACTTTTTAAACAGCATCTGG 58.432 33.333 1.20 0.00 35.51 3.86
6739 7842 7.435068 TCTACTTTTTAAACAGCATCTGGTC 57.565 36.000 1.20 0.00 35.51 4.02
6767 7870 8.467598 TCTCTAGAATTGCTACTCGTTTTACAT 58.532 33.333 0.00 0.00 0.00 2.29
6782 7885 9.893305 CTCGTTTTACATGGAAAAGATTACTTT 57.107 29.630 16.30 0.00 46.64 2.66
6819 7922 2.930040 CACCGTCGTGATATTTCAAGCT 59.070 45.455 0.00 0.00 43.14 3.74
6835 7938 4.722220 TCAAGCTAGCTACTTATACGGGA 58.278 43.478 19.70 0.62 0.00 5.14
6838 7941 4.467769 AGCTAGCTACTTATACGGGACAA 58.532 43.478 17.69 0.00 0.00 3.18
6855 7958 3.366052 ACAAGGAGTTTCCACACTTGT 57.634 42.857 0.00 0.00 43.22 3.16
6865 7968 1.337703 TCCACACTTGTGCTCAATTGC 59.662 47.619 16.06 0.00 44.34 3.56
6879 7982 1.722464 CAATTGCGCCATTGTGAACAG 59.278 47.619 22.45 0.00 0.00 3.16
6880 7983 0.961019 ATTGCGCCATTGTGAACAGT 59.039 45.000 4.18 0.00 0.00 3.55
6881 7984 1.598882 TTGCGCCATTGTGAACAGTA 58.401 45.000 4.18 0.00 0.00 2.74
6882 7985 1.598882 TGCGCCATTGTGAACAGTAA 58.401 45.000 4.18 0.00 0.00 2.24
6883 7986 1.950216 TGCGCCATTGTGAACAGTAAA 59.050 42.857 4.18 0.00 0.00 2.01
6884 7987 2.359214 TGCGCCATTGTGAACAGTAAAA 59.641 40.909 4.18 0.00 0.00 1.52
6885 7988 2.724174 GCGCCATTGTGAACAGTAAAAC 59.276 45.455 0.00 0.00 0.00 2.43
6886 7989 3.305110 CGCCATTGTGAACAGTAAAACC 58.695 45.455 0.00 0.00 0.00 3.27
6887 7990 3.649073 GCCATTGTGAACAGTAAAACCC 58.351 45.455 0.00 0.00 0.00 4.11
6962 8066 5.900425 TCAGTTTTCTGCTTATGTGCAAAA 58.100 33.333 0.00 0.00 46.59 2.44
7066 8170 9.831737 TTTGGTGTGTTGATTTTGTTATTTTTG 57.168 25.926 0.00 0.00 0.00 2.44
7076 8180 7.936301 TGATTTTGTTATTTTTGCTTAGGCCTT 59.064 29.630 12.58 0.00 37.74 4.35
7101 8205 6.499234 ACGAATGTGATTTCATCATGACAA 57.501 33.333 0.00 0.00 42.04 3.18
7103 8207 7.541162 ACGAATGTGATTTCATCATGACAAAT 58.459 30.769 12.32 12.32 42.04 2.32
7122 8253 4.660789 AATTGCATTTGAGCTGGGATAC 57.339 40.909 0.00 0.00 34.99 2.24
7123 8254 3.370840 TTGCATTTGAGCTGGGATACT 57.629 42.857 0.00 0.00 34.99 2.12
7124 8255 3.370840 TGCATTTGAGCTGGGATACTT 57.629 42.857 0.00 0.00 34.99 2.24
7125 8256 3.700538 TGCATTTGAGCTGGGATACTTT 58.299 40.909 0.00 0.00 34.99 2.66
7126 8257 3.696051 TGCATTTGAGCTGGGATACTTTC 59.304 43.478 0.00 0.00 34.99 2.62
7129 8260 5.644644 CATTTGAGCTGGGATACTTTCAAC 58.355 41.667 0.00 0.00 0.00 3.18
7130 8261 4.640771 TTGAGCTGGGATACTTTCAACT 57.359 40.909 0.00 0.00 0.00 3.16
7131 8262 4.640771 TGAGCTGGGATACTTTCAACTT 57.359 40.909 0.00 0.00 0.00 2.66
7132 8263 5.755409 TGAGCTGGGATACTTTCAACTTA 57.245 39.130 0.00 0.00 0.00 2.24
7133 8264 6.121776 TGAGCTGGGATACTTTCAACTTAA 57.878 37.500 0.00 0.00 0.00 1.85
7134 8265 5.938125 TGAGCTGGGATACTTTCAACTTAAC 59.062 40.000 0.00 0.00 0.00 2.01
7135 8266 4.935808 AGCTGGGATACTTTCAACTTAACG 59.064 41.667 0.00 0.00 0.00 3.18
7137 8268 5.231702 TGGGATACTTTCAACTTAACGGT 57.768 39.130 0.00 0.00 0.00 4.83
7171 8308 4.631813 CCTTTTCTTGTTACGCAGAGCTAT 59.368 41.667 0.00 0.00 0.00 2.97
7175 8312 4.784329 TCTTGTTACGCAGAGCTATATCG 58.216 43.478 0.00 0.00 0.00 2.92
7187 8324 3.542648 AGCTATATCGCGCTATAGTGGA 58.457 45.455 28.17 10.44 35.17 4.02
7190 8327 4.438336 GCTATATCGCGCTATAGTGGACAA 60.438 45.833 28.17 2.62 35.17 3.18
7193 8330 2.469826 TCGCGCTATAGTGGACAAATG 58.530 47.619 14.94 0.00 0.00 2.32
7201 8338 6.257849 CGCTATAGTGGACAAATGTTACATGT 59.742 38.462 2.69 2.69 0.00 3.21
7202 8339 7.436970 CGCTATAGTGGACAAATGTTACATGTA 59.563 37.037 0.08 0.08 0.00 2.29
7264 9959 3.215151 TCGGAGAGTAGGTGCTAGATTG 58.785 50.000 0.00 0.00 0.00 2.67
7266 9961 3.301274 GGAGAGTAGGTGCTAGATTGGT 58.699 50.000 0.00 0.00 0.00 3.67
7267 9962 4.471548 GGAGAGTAGGTGCTAGATTGGTA 58.528 47.826 0.00 0.00 0.00 3.25
7268 9963 4.278919 GGAGAGTAGGTGCTAGATTGGTAC 59.721 50.000 0.00 0.00 0.00 3.34
7269 9964 5.132043 AGAGTAGGTGCTAGATTGGTACT 57.868 43.478 0.00 0.00 0.00 2.73
7270 9965 5.134661 AGAGTAGGTGCTAGATTGGTACTC 58.865 45.833 0.00 3.06 36.65 2.59
7271 9966 4.216708 AGTAGGTGCTAGATTGGTACTCC 58.783 47.826 0.00 0.00 0.00 3.85
7272 9967 2.399580 AGGTGCTAGATTGGTACTCCC 58.600 52.381 0.00 0.00 0.00 4.30
7273 9968 2.022918 AGGTGCTAGATTGGTACTCCCT 60.023 50.000 0.00 0.00 0.00 4.20
7274 9969 2.365941 GGTGCTAGATTGGTACTCCCTC 59.634 54.545 0.00 0.00 0.00 4.30
7275 9970 2.365941 GTGCTAGATTGGTACTCCCTCC 59.634 54.545 0.00 0.00 0.00 4.30
7276 9971 2.023404 TGCTAGATTGGTACTCCCTCCA 60.023 50.000 0.00 0.00 0.00 3.86
7277 9972 3.243724 GCTAGATTGGTACTCCCTCCAT 58.756 50.000 0.00 0.00 33.50 3.41
7278 9973 3.259625 GCTAGATTGGTACTCCCTCCATC 59.740 52.174 0.00 0.00 33.50 3.51
7279 9974 2.695585 AGATTGGTACTCCCTCCATCC 58.304 52.381 0.00 0.00 33.50 3.51
7280 9975 2.251338 AGATTGGTACTCCCTCCATCCT 59.749 50.000 0.00 0.00 33.50 3.24
7282 9977 3.788116 TTGGTACTCCCTCCATCCTAA 57.212 47.619 0.00 0.00 33.50 2.69
7283 9978 3.788116 TGGTACTCCCTCCATCCTAAA 57.212 47.619 0.00 0.00 0.00 1.85
7284 9979 4.083080 TGGTACTCCCTCCATCCTAAAA 57.917 45.455 0.00 0.00 0.00 1.52
7285 9980 4.641868 TGGTACTCCCTCCATCCTAAAAT 58.358 43.478 0.00 0.00 0.00 1.82
7286 9981 5.795079 TGGTACTCCCTCCATCCTAAAATA 58.205 41.667 0.00 0.00 0.00 1.40
7288 9983 7.550042 TGGTACTCCCTCCATCCTAAAATATA 58.450 38.462 0.00 0.00 0.00 0.86
7289 9984 8.020253 TGGTACTCCCTCCATCCTAAAATATAA 58.980 37.037 0.00 0.00 0.00 0.98
7290 9985 8.887393 GGTACTCCCTCCATCCTAAAATATAAA 58.113 37.037 0.00 0.00 0.00 1.40
7317 10012 9.953697 AATATAAAAACGTTTTTGACACTAGCA 57.046 25.926 36.92 20.91 40.33 3.49
7320 10015 7.908193 AAAAACGTTTTTGACACTAGCATAG 57.092 32.000 32.14 0.00 40.66 2.23
7321 10016 7.477494 AAAAACGTTTTTGACACTAGCATAGT 58.523 30.769 32.14 7.76 44.83 2.12
7322 10017 8.614346 AAAAACGTTTTTGACACTAGCATAGTA 58.386 29.630 32.14 0.00 43.43 1.82
7367 10062 8.787852 ACTTTCTCTGTTTCAAAATAGATGACC 58.212 33.333 2.91 0.00 35.92 4.02
7368 10063 7.687941 TTCTCTGTTTCAAAATAGATGACCC 57.312 36.000 2.91 0.00 35.92 4.46
7369 10064 6.778821 TCTCTGTTTCAAAATAGATGACCCA 58.221 36.000 2.91 0.00 35.92 4.51
7370 10065 7.230747 TCTCTGTTTCAAAATAGATGACCCAA 58.769 34.615 2.91 0.00 35.92 4.12
7371 10066 7.174946 TCTCTGTTTCAAAATAGATGACCCAAC 59.825 37.037 2.91 0.00 35.92 3.77
7372 10067 6.007936 TGTTTCAAAATAGATGACCCAACG 57.992 37.500 0.00 0.00 0.00 4.10
7373 10068 5.048364 TGTTTCAAAATAGATGACCCAACGG 60.048 40.000 0.00 0.00 0.00 4.44
7374 10069 4.561500 TCAAAATAGATGACCCAACGGA 57.438 40.909 0.00 0.00 0.00 4.69
7375 10070 4.513442 TCAAAATAGATGACCCAACGGAG 58.487 43.478 0.00 0.00 0.00 4.63
7376 10071 3.560636 AAATAGATGACCCAACGGAGG 57.439 47.619 0.00 0.00 0.00 4.30
7427 10127 1.533625 CATCTTTCTTTGCCACCCGA 58.466 50.000 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.270027 TCGCTTTGATAAGTGGATGTGG 58.730 45.455 0.00 0.00 41.26 4.17
22 23 3.535561 CCTCGCTTTGATAAGTGGATGT 58.464 45.455 0.00 0.00 41.26 3.06
24 25 2.565841 GCCTCGCTTTGATAAGTGGAT 58.434 47.619 0.00 0.00 41.26 3.41
25 26 1.739035 CGCCTCGCTTTGATAAGTGGA 60.739 52.381 0.00 0.00 41.26 4.02
28 29 1.090052 GCCGCCTCGCTTTGATAAGT 61.090 55.000 0.00 0.00 33.74 2.24
30 31 0.810031 GAGCCGCCTCGCTTTGATAA 60.810 55.000 0.00 0.00 39.87 1.75
31 32 1.227263 GAGCCGCCTCGCTTTGATA 60.227 57.895 0.00 0.00 39.87 2.15
50 55 1.747355 GCCATCCATGAACCAACAGAG 59.253 52.381 0.00 0.00 0.00 3.35
52 57 0.819582 GGCCATCCATGAACCAACAG 59.180 55.000 0.00 0.00 0.00 3.16
56 61 2.440065 GCGGCCATCCATGAACCA 60.440 61.111 2.24 0.00 0.00 3.67
58 63 3.585990 CGGCGGCCATCCATGAAC 61.586 66.667 20.71 0.00 0.00 3.18
90 95 2.758089 TAGCCTTCTCGTCGCCGAC 61.758 63.158 7.29 7.29 38.40 4.79
92 97 2.278013 GTAGCCTTCTCGTCGCCG 60.278 66.667 0.00 0.00 0.00 6.46
96 101 1.661112 GTGCATTGTAGCCTTCTCGTC 59.339 52.381 0.00 0.00 0.00 4.20
98 103 1.009829 GGTGCATTGTAGCCTTCTCG 58.990 55.000 0.00 0.00 0.00 4.04
102 107 0.611896 GGGTGGTGCATTGTAGCCTT 60.612 55.000 1.45 0.00 0.00 4.35
112 117 1.053835 TCTTCAGAGTGGGTGGTGCA 61.054 55.000 0.00 0.00 0.00 4.57
129 134 5.455899 GGAAGCCATGAATCTGACCTTATCT 60.456 44.000 0.00 0.00 0.00 1.98
161 166 2.679716 GGCCAGATCCCAGCAAGT 59.320 61.111 0.00 0.00 0.00 3.16
167 172 4.088351 TCTCCCGGCCAGATCCCA 62.088 66.667 2.24 0.00 0.00 4.37
169 174 2.444895 ACTCTCCCGGCCAGATCC 60.445 66.667 2.24 0.00 0.00 3.36
177 182 2.136878 CCCCTCATCACTCTCCCGG 61.137 68.421 0.00 0.00 0.00 5.73
178 183 2.136878 CCCCCTCATCACTCTCCCG 61.137 68.421 0.00 0.00 0.00 5.14
199 204 2.128507 CACGCCCTACTCCTCTCCC 61.129 68.421 0.00 0.00 0.00 4.30
201 206 1.668101 CCACACGCCCTACTCCTCTC 61.668 65.000 0.00 0.00 0.00 3.20
202 207 1.682684 CCACACGCCCTACTCCTCT 60.683 63.158 0.00 0.00 0.00 3.69
203 208 1.668101 CTCCACACGCCCTACTCCTC 61.668 65.000 0.00 0.00 0.00 3.71
204 209 1.682684 CTCCACACGCCCTACTCCT 60.683 63.158 0.00 0.00 0.00 3.69
205 210 1.668101 CTCTCCACACGCCCTACTCC 61.668 65.000 0.00 0.00 0.00 3.85
207 212 1.682684 CCTCTCCACACGCCCTACT 60.683 63.158 0.00 0.00 0.00 2.57
208 213 2.722201 CCCTCTCCACACGCCCTAC 61.722 68.421 0.00 0.00 0.00 3.18
264 270 2.331451 GCACCCACACGAACAAGC 59.669 61.111 0.00 0.00 0.00 4.01
266 272 1.821759 CTGGCACCCACACGAACAA 60.822 57.895 0.00 0.00 0.00 2.83
273 279 0.179020 CTCTGAAACTGGCACCCACA 60.179 55.000 0.00 0.00 0.00 4.17
288 294 6.087423 CGTCATATCATAAGAAGCGTTCTCTG 59.913 42.308 1.58 3.60 39.61 3.35
292 298 5.107837 CCACGTCATATCATAAGAAGCGTTC 60.108 44.000 0.00 0.00 0.00 3.95
293 299 4.745125 CCACGTCATATCATAAGAAGCGTT 59.255 41.667 0.00 0.00 0.00 4.84
294 300 4.299155 CCACGTCATATCATAAGAAGCGT 58.701 43.478 0.00 0.00 0.00 5.07
296 302 4.058124 TGCCACGTCATATCATAAGAAGC 58.942 43.478 0.00 0.00 0.00 3.86
297 303 5.523552 TGTTGCCACGTCATATCATAAGAAG 59.476 40.000 0.00 0.00 0.00 2.85
298 304 5.293324 GTGTTGCCACGTCATATCATAAGAA 59.707 40.000 0.00 0.00 0.00 2.52
300 306 4.811024 AGTGTTGCCACGTCATATCATAAG 59.189 41.667 0.00 0.00 46.56 1.73
301 307 4.765273 AGTGTTGCCACGTCATATCATAA 58.235 39.130 0.00 0.00 46.56 1.90
302 308 4.099419 AGAGTGTTGCCACGTCATATCATA 59.901 41.667 0.00 0.00 46.56 2.15
303 309 3.118629 AGAGTGTTGCCACGTCATATCAT 60.119 43.478 0.00 0.00 46.56 2.45
304 310 2.233676 AGAGTGTTGCCACGTCATATCA 59.766 45.455 0.00 0.00 46.56 2.15
305 311 2.860735 GAGAGTGTTGCCACGTCATATC 59.139 50.000 0.00 0.00 46.56 1.63
306 312 2.497675 AGAGAGTGTTGCCACGTCATAT 59.502 45.455 0.00 0.00 46.56 1.78
307 313 1.893137 AGAGAGTGTTGCCACGTCATA 59.107 47.619 0.00 0.00 46.56 2.15
308 314 0.681733 AGAGAGTGTTGCCACGTCAT 59.318 50.000 0.00 0.00 46.56 3.06
309 315 0.249447 CAGAGAGTGTTGCCACGTCA 60.249 55.000 0.00 0.00 46.56 4.35
334 340 2.247437 GGATGAGGCGCACGAATCC 61.247 63.158 10.83 12.13 0.00 3.01
373 379 6.469410 ACGTCAGATGTTTAAGGATTACCAA 58.531 36.000 0.00 0.00 38.94 3.67
377 383 7.658167 TGACAAACGTCAGATGTTTAAGGATTA 59.342 33.333 18.53 1.81 38.50 1.75
553 560 2.122989 ACGTGTGGGGGTCACTCT 60.123 61.111 0.00 0.00 46.20 3.24
573 596 0.387239 GTTTGGTGTGGATTGAGCGC 60.387 55.000 0.00 0.00 0.00 5.92
709 764 0.623723 GATTTGCCAGTGGGAGGGTA 59.376 55.000 12.15 0.00 35.59 3.69
710 765 1.384191 GATTTGCCAGTGGGAGGGT 59.616 57.895 12.15 0.00 35.59 4.34
784 839 6.207221 CCGATCAGATAGAGATAGATGATGGG 59.793 46.154 0.00 0.00 36.93 4.00
846 901 2.442126 GGGGAAGTGAGTTTATAGGGGG 59.558 54.545 0.00 0.00 0.00 5.40
954 1009 2.815298 GACTCTCGTCTCTCGCGGG 61.815 68.421 6.13 1.01 39.67 6.13
1095 1150 2.846918 GCGCGATTGGAGATACGC 59.153 61.111 12.10 0.00 46.08 4.42
1096 1151 2.988549 GCGCGCGATTGGAGATACG 61.989 63.158 37.18 0.00 0.00 3.06
1097 1152 2.846918 GCGCGCGATTGGAGATAC 59.153 61.111 37.18 7.60 0.00 2.24
1177 1237 1.813753 CCTAATCACGGTGCCACGG 60.814 63.158 2.51 0.27 38.39 4.94
1469 1530 7.332182 GCAGATTAGTACTAGTGAAGCAAAACT 59.668 37.037 5.39 0.55 0.00 2.66
1514 1575 2.055689 CTTGACCTCACCCACCTGCA 62.056 60.000 0.00 0.00 0.00 4.41
1714 1775 3.371102 TCAAGAGTTGGAGAACTGACG 57.629 47.619 0.00 0.00 42.80 4.35
1730 1791 4.835056 AGGGTCTGGGAAAAATTCTTCAAG 59.165 41.667 0.00 0.00 0.00 3.02
1890 1956 6.311935 TGTCTAATAAGGTCCGTCAAATTTCG 59.688 38.462 0.00 0.00 0.00 3.46
1916 1982 4.988540 TGAATACTTCGACACAGAACTTGG 59.011 41.667 0.00 0.00 0.00 3.61
1923 1989 6.146184 AGACAAACATGAATACTTCGACACAG 59.854 38.462 0.00 0.00 0.00 3.66
1925 1991 6.145534 TCAGACAAACATGAATACTTCGACAC 59.854 38.462 0.00 0.00 0.00 3.67
2046 2112 4.265556 GTGTAACAGAGCACATCATCGTAC 59.734 45.833 0.00 0.00 36.32 3.67
2197 2263 9.155975 ACATTACTGAGAGAACATACAAATGTC 57.844 33.333 0.00 0.00 45.79 3.06
2262 2328 5.154222 AGCGCTTAACAAAAGAACATTAGC 58.846 37.500 2.64 0.00 0.00 3.09
2314 2380 6.479331 AGCATCATCGCATGTCTATGATTATC 59.521 38.462 13.52 8.48 38.08 1.75
2549 2615 4.634012 ATACAGTTCTGGCACCAACTTA 57.366 40.909 4.65 3.12 29.34 2.24
2565 2631 9.643693 ACAGCCATTTAAATCTTCAAAATACAG 57.356 29.630 0.00 0.00 0.00 2.74
2602 2668 9.553064 GCCAGATATAAGTTAATGATATCCAGG 57.447 37.037 0.00 12.84 34.44 4.45
2613 2679 8.236585 ACAAATGCATGCCAGATATAAGTTAA 57.763 30.769 16.68 0.00 0.00 2.01
2619 2685 5.829391 ACAAGACAAATGCATGCCAGATATA 59.171 36.000 16.68 0.00 0.00 0.86
2620 2686 4.647853 ACAAGACAAATGCATGCCAGATAT 59.352 37.500 16.68 0.00 0.00 1.63
2628 2694 5.449588 CCTTAGGCTACAAGACAAATGCATG 60.450 44.000 0.00 0.00 0.00 4.06
2705 2774 6.548441 TCTTACAAAAACGTATGAACCCAG 57.452 37.500 0.00 0.00 0.00 4.45
2723 2792 3.569277 GGAACGGAGGGAGTAGATCTTAC 59.431 52.174 0.00 0.00 0.00 2.34
2725 2794 2.668625 GGAACGGAGGGAGTAGATCTT 58.331 52.381 0.00 0.00 0.00 2.40
2741 2810 5.699458 TGAGTCTTCTATTTTGGAACGGAAC 59.301 40.000 0.00 0.00 0.00 3.62
2742 2811 5.860611 TGAGTCTTCTATTTTGGAACGGAA 58.139 37.500 0.00 0.00 0.00 4.30
2743 2812 5.477607 TGAGTCTTCTATTTTGGAACGGA 57.522 39.130 0.00 0.00 0.00 4.69
2744 2813 5.701290 AGTTGAGTCTTCTATTTTGGAACGG 59.299 40.000 0.00 0.00 0.00 4.44
2745 2814 6.787085 AGTTGAGTCTTCTATTTTGGAACG 57.213 37.500 0.00 0.00 0.00 3.95
2746 2815 8.406297 ACAAAGTTGAGTCTTCTATTTTGGAAC 58.594 33.333 0.00 0.00 38.82 3.62
2747 2816 8.519799 ACAAAGTTGAGTCTTCTATTTTGGAA 57.480 30.769 0.00 0.00 38.82 3.53
2748 2817 9.052759 GTACAAAGTTGAGTCTTCTATTTTGGA 57.947 33.333 0.00 1.77 38.82 3.53
2749 2818 9.057089 AGTACAAAGTTGAGTCTTCTATTTTGG 57.943 33.333 0.00 0.00 38.82 3.28
2756 2825 9.968870 CTAAGTTAGTACAAAGTTGAGTCTTCT 57.031 33.333 1.40 0.00 0.00 2.85
2757 2826 9.747293 ACTAAGTTAGTACAAAGTTGAGTCTTC 57.253 33.333 14.00 0.00 37.23 2.87
2772 2841 8.248904 TGACCCAACTTTGTACTAAGTTAGTA 57.751 34.615 27.33 17.12 44.33 1.82
2773 2842 7.128234 TGACCCAACTTTGTACTAAGTTAGT 57.872 36.000 27.33 25.69 44.33 2.24
2774 2843 8.095169 AGATGACCCAACTTTGTACTAAGTTAG 58.905 37.037 27.33 23.50 44.33 2.34
2775 2844 7.970102 AGATGACCCAACTTTGTACTAAGTTA 58.030 34.615 27.33 16.34 44.33 2.24
2776 2845 6.838382 AGATGACCCAACTTTGTACTAAGTT 58.162 36.000 23.96 23.96 46.42 2.66
2777 2846 6.435292 AGATGACCCAACTTTGTACTAAGT 57.565 37.500 15.68 15.68 39.97 2.24
2778 2847 9.449719 AAATAGATGACCCAACTTTGTACTAAG 57.550 33.333 14.42 14.42 0.00 2.18
2779 2848 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2780 2849 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2781 2850 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2782 2851 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2783 2852 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2784 2853 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2785 2854 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2786 2855 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2787 2856 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2788 2857 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2789 2858 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2790 2859 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2791 2860 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2792 2861 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2793 2862 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2794 2863 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2795 2864 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2796 2865 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2797 2866 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2798 2867 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2799 2868 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2800 2869 3.198417 GGTACTCCCTCCGTTCCAAAATA 59.802 47.826 0.00 0.00 0.00 1.40
2801 2870 2.026542 GGTACTCCCTCCGTTCCAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
2802 2871 1.348696 GGTACTCCCTCCGTTCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
2803 2872 0.978907 GGTACTCCCTCCGTTCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
2804 2873 0.115745 AGGTACTCCCTCCGTTCCAA 59.884 55.000 0.00 0.00 40.71 3.53
2805 2874 1.002069 TAGGTACTCCCTCCGTTCCA 58.998 55.000 0.00 0.00 44.81 3.53
2806 2875 2.378378 ATAGGTACTCCCTCCGTTCC 57.622 55.000 0.00 0.00 44.81 3.62
2807 2876 5.303845 ACAATAATAGGTACTCCCTCCGTTC 59.696 44.000 0.00 0.00 44.81 3.95
2808 2877 5.214293 ACAATAATAGGTACTCCCTCCGTT 58.786 41.667 0.00 0.00 44.81 4.44
2809 2878 4.812653 ACAATAATAGGTACTCCCTCCGT 58.187 43.478 0.00 0.00 44.81 4.69
2810 2879 7.477945 AATACAATAATAGGTACTCCCTCCG 57.522 40.000 0.00 0.00 44.81 4.63
2912 2982 9.302345 TGAAGACGCATAAAATACAAAAACAAA 57.698 25.926 0.00 0.00 0.00 2.83
2913 2983 8.858003 TGAAGACGCATAAAATACAAAAACAA 57.142 26.923 0.00 0.00 0.00 2.83
2914 2984 9.469807 AATGAAGACGCATAAAATACAAAAACA 57.530 25.926 0.00 0.00 0.00 2.83
2915 2985 9.937577 GAATGAAGACGCATAAAATACAAAAAC 57.062 29.630 0.00 0.00 0.00 2.43
2916 2986 9.134734 GGAATGAAGACGCATAAAATACAAAAA 57.865 29.630 0.00 0.00 0.00 1.94
2917 2987 7.757624 GGGAATGAAGACGCATAAAATACAAAA 59.242 33.333 0.00 0.00 0.00 2.44
2918 2988 7.094162 TGGGAATGAAGACGCATAAAATACAAA 60.094 33.333 0.00 0.00 0.00 2.83
2919 2989 6.375736 TGGGAATGAAGACGCATAAAATACAA 59.624 34.615 0.00 0.00 0.00 2.41
2920 2990 5.883115 TGGGAATGAAGACGCATAAAATACA 59.117 36.000 0.00 0.00 0.00 2.29
2921 2991 6.199393 GTGGGAATGAAGACGCATAAAATAC 58.801 40.000 0.00 0.00 0.00 1.89
2922 2992 5.298276 GGTGGGAATGAAGACGCATAAAATA 59.702 40.000 0.00 0.00 0.00 1.40
2923 2993 4.097892 GGTGGGAATGAAGACGCATAAAAT 59.902 41.667 0.00 0.00 0.00 1.82
2932 3016 6.659242 TGAAGATAAAAGGTGGGAATGAAGAC 59.341 38.462 0.00 0.00 0.00 3.01
3035 3128 5.869579 ACACACATTTCTCAGGTTCACTAT 58.130 37.500 0.00 0.00 0.00 2.12
3065 3158 6.157820 TGATCACAGATGTCCCACCTTATTAA 59.842 38.462 0.00 0.00 0.00 1.40
3533 3634 9.944376 AGCATATTGGATGTAATAACGTCTTAT 57.056 29.630 0.00 0.00 40.82 1.73
3700 3812 4.928020 GGGAGTAGTTTACAGAAAGAACCG 59.072 45.833 0.00 0.00 0.00 4.44
3881 3994 4.276926 AGAAAAGTTCAGAACATGGCTCAC 59.723 41.667 15.85 0.00 0.00 3.51
4016 4129 3.136763 CAGCTGCTAGGTATGTCAATGG 58.863 50.000 0.00 0.00 0.00 3.16
4284 4416 4.406069 CAAACACATAGAATGAACTGCCG 58.594 43.478 0.00 0.00 0.00 5.69
4307 4439 1.818060 TGTGCTGATGCCAAATACACC 59.182 47.619 0.00 0.00 38.71 4.16
4416 4548 6.812160 ACGGATTATACACAGTGAAAGAGAAC 59.188 38.462 7.81 0.00 0.00 3.01
4746 4880 6.399639 TCCCTCCAGATTTTGTACAAAAAC 57.600 37.500 31.40 28.33 42.71 2.43
4960 5094 0.543277 CATTAGGCCCTGCAGAGACA 59.457 55.000 17.39 0.00 0.00 3.41
5325 6191 3.620488 TGCTATGATTTTCCCTCCACAC 58.380 45.455 0.00 0.00 0.00 3.82
5533 6493 7.495934 CACTTGGAATACCCTGTTAAGATAGTG 59.504 40.741 0.00 0.00 35.38 2.74
5561 6521 2.999063 GCACCAGCATTTGCCCCT 60.999 61.111 0.00 0.00 43.38 4.79
5645 6605 4.523083 TCAATGACCAACCAGTATAAGGC 58.477 43.478 0.00 0.00 0.00 4.35
5806 6766 9.719279 CTTCTATAGAAGTAGTGACCTAAAACG 57.281 37.037 27.64 3.78 44.80 3.60
6463 7555 5.456779 TCATGGCCATGATCCAAAAGATAA 58.543 37.500 38.91 16.52 42.42 1.75
6557 7649 7.876068 AGATATAAGAACGACACCAAACTGAAA 59.124 33.333 0.00 0.00 0.00 2.69
6559 7651 6.931838 AGATATAAGAACGACACCAAACTGA 58.068 36.000 0.00 0.00 0.00 3.41
6619 7714 6.532657 ACAAGAAATTGAAAGTCAGCAACAAG 59.467 34.615 0.00 0.00 0.00 3.16
6620 7715 6.397272 ACAAGAAATTGAAAGTCAGCAACAA 58.603 32.000 0.00 0.00 0.00 2.83
6737 7840 6.067263 ACGAGTAGCAATTCTAGAGATGAC 57.933 41.667 10.17 2.21 0.00 3.06
6739 7842 7.763172 AAAACGAGTAGCAATTCTAGAGATG 57.237 36.000 0.00 0.00 0.00 2.90
6782 7885 2.422832 ACGGTGCGAACAAAAACCTAAA 59.577 40.909 0.00 0.00 0.00 1.85
6819 7922 5.052693 TCCTTGTCCCGTATAAGTAGCTA 57.947 43.478 0.00 0.00 0.00 3.32
6831 7934 0.107831 TGTGGAAACTCCTTGTCCCG 59.892 55.000 0.00 0.00 37.46 5.14
6835 7938 3.016736 CACAAGTGTGGAAACTCCTTGT 58.983 45.455 3.39 0.00 41.56 3.16
6838 7941 1.212935 AGCACAAGTGTGGAAACTCCT 59.787 47.619 13.10 0.00 45.72 3.69
6855 7958 0.388778 CACAATGGCGCAATTGAGCA 60.389 50.000 37.72 19.23 42.80 4.26
6865 7968 3.305110 GGTTTTACTGTTCACAATGGCG 58.695 45.455 0.00 0.00 0.00 5.69
6928 8031 7.647907 AAGCAGAAAACTGAGCAAATTATTG 57.352 32.000 0.00 0.00 39.65 1.90
6930 8033 8.526147 ACATAAGCAGAAAACTGAGCAAATTAT 58.474 29.630 0.00 0.00 0.00 1.28
6931 8034 7.809331 CACATAAGCAGAAAACTGAGCAAATTA 59.191 33.333 0.00 0.00 0.00 1.40
6934 8037 5.522456 CACATAAGCAGAAAACTGAGCAAA 58.478 37.500 0.00 0.00 0.00 3.68
6935 8038 4.557296 GCACATAAGCAGAAAACTGAGCAA 60.557 41.667 0.00 0.00 0.00 3.91
6937 8040 3.058016 TGCACATAAGCAGAAAACTGAGC 60.058 43.478 0.00 0.00 40.11 4.26
6938 8041 4.754372 TGCACATAAGCAGAAAACTGAG 57.246 40.909 0.00 0.00 40.11 3.35
6940 8043 6.774354 ATTTTGCACATAAGCAGAAAACTG 57.226 33.333 0.00 0.00 46.54 3.16
6941 8044 7.790823 AAATTTTGCACATAAGCAGAAAACT 57.209 28.000 0.00 0.00 46.54 2.66
6942 8045 9.532697 CATAAATTTTGCACATAAGCAGAAAAC 57.467 29.630 0.00 0.00 46.54 2.43
6943 8046 9.486497 TCATAAATTTTGCACATAAGCAGAAAA 57.514 25.926 0.00 0.00 46.54 2.29
6948 8051 9.486497 TTTCTTCATAAATTTTGCACATAAGCA 57.514 25.926 0.00 0.00 43.99 3.91
7066 8170 1.398390 CACATTCGTGAAGGCCTAAGC 59.602 52.381 5.16 0.00 46.80 3.09
7101 8205 4.284178 AGTATCCCAGCTCAAATGCAATT 58.716 39.130 0.00 0.00 38.98 2.32
7103 8207 3.370840 AGTATCCCAGCTCAAATGCAA 57.629 42.857 0.00 0.00 34.99 4.08
7121 8252 9.117183 AGAAGATAAAACCGTTAAGTTGAAAGT 57.883 29.630 0.00 0.00 0.00 2.66
7122 8253 9.595357 GAGAAGATAAAACCGTTAAGTTGAAAG 57.405 33.333 0.00 0.00 0.00 2.62
7123 8254 8.562052 GGAGAAGATAAAACCGTTAAGTTGAAA 58.438 33.333 0.00 0.00 0.00 2.69
7124 8255 7.935210 AGGAGAAGATAAAACCGTTAAGTTGAA 59.065 33.333 0.00 0.00 0.00 2.69
7125 8256 7.447594 AGGAGAAGATAAAACCGTTAAGTTGA 58.552 34.615 0.00 0.00 0.00 3.18
7126 8257 7.668525 AGGAGAAGATAAAACCGTTAAGTTG 57.331 36.000 0.00 0.00 0.00 3.16
7129 8260 9.000486 AGAAAAGGAGAAGATAAAACCGTTAAG 58.000 33.333 0.00 0.00 0.00 1.85
7130 8261 8.913487 AGAAAAGGAGAAGATAAAACCGTTAA 57.087 30.769 0.00 0.00 0.00 2.01
7131 8262 8.780249 CAAGAAAAGGAGAAGATAAAACCGTTA 58.220 33.333 0.00 0.00 0.00 3.18
7132 8263 7.284716 ACAAGAAAAGGAGAAGATAAAACCGTT 59.715 33.333 0.00 0.00 0.00 4.44
7133 8264 6.771267 ACAAGAAAAGGAGAAGATAAAACCGT 59.229 34.615 0.00 0.00 0.00 4.83
7134 8265 7.203255 ACAAGAAAAGGAGAAGATAAAACCG 57.797 36.000 0.00 0.00 0.00 4.44
7135 8266 9.894783 GTAACAAGAAAAGGAGAAGATAAAACC 57.105 33.333 0.00 0.00 0.00 3.27
7137 8268 8.287503 GCGTAACAAGAAAAGGAGAAGATAAAA 58.712 33.333 0.00 0.00 0.00 1.52
7171 8308 3.994204 TTTGTCCACTATAGCGCGATA 57.006 42.857 12.10 9.16 0.00 2.92
7175 8312 4.569162 TGTAACATTTGTCCACTATAGCGC 59.431 41.667 0.00 0.00 0.00 5.92
7264 9959 6.954352 ATATTTTAGGATGGAGGGAGTACC 57.046 41.667 0.00 0.00 40.67 3.34
7294 9989 9.607285 CTATGCTAGTGTCAAAAACGTTTTTAT 57.393 29.630 32.12 22.01 38.23 1.40
7295 9990 8.614346 ACTATGCTAGTGTCAAAAACGTTTTTA 58.386 29.630 32.12 18.43 36.61 1.52
7297 9992 7.023197 ACTATGCTAGTGTCAAAAACGTTTT 57.977 32.000 20.26 20.26 37.69 2.43
7298 9993 6.613755 ACTATGCTAGTGTCAAAAACGTTT 57.386 33.333 7.96 7.96 37.69 3.60
7299 9994 7.900782 ATACTATGCTAGTGTCAAAAACGTT 57.099 32.000 0.00 0.00 39.81 3.99
7300 9995 7.521509 GATACTATGCTAGTGTCAAAAACGT 57.478 36.000 12.10 0.00 43.73 3.99
7308 10003 8.879342 AATGTTTCTGATACTATGCTAGTGTC 57.121 34.615 10.84 10.84 44.30 3.67
7341 10036 8.787852 GGTCATCTATTTTGAAACAGAGAAAGT 58.212 33.333 0.00 0.00 0.00 2.66
7342 10037 8.239998 GGGTCATCTATTTTGAAACAGAGAAAG 58.760 37.037 0.00 0.00 0.00 2.62
7343 10038 7.723616 TGGGTCATCTATTTTGAAACAGAGAAA 59.276 33.333 0.00 0.00 0.00 2.52
7344 10039 7.230747 TGGGTCATCTATTTTGAAACAGAGAA 58.769 34.615 0.00 0.00 0.00 2.87
7345 10040 6.778821 TGGGTCATCTATTTTGAAACAGAGA 58.221 36.000 0.00 0.00 0.00 3.10
7346 10041 7.308435 GTTGGGTCATCTATTTTGAAACAGAG 58.692 38.462 0.00 0.00 0.00 3.35
7347 10042 6.072728 CGTTGGGTCATCTATTTTGAAACAGA 60.073 38.462 0.00 0.00 0.00 3.41
7348 10043 6.086222 CGTTGGGTCATCTATTTTGAAACAG 58.914 40.000 0.00 0.00 0.00 3.16
7349 10044 5.048364 CCGTTGGGTCATCTATTTTGAAACA 60.048 40.000 0.00 0.00 0.00 2.83
7350 10045 5.182380 TCCGTTGGGTCATCTATTTTGAAAC 59.818 40.000 0.00 0.00 33.83 2.78
7351 10046 5.317808 TCCGTTGGGTCATCTATTTTGAAA 58.682 37.500 0.00 0.00 33.83 2.69
7352 10047 4.912586 TCCGTTGGGTCATCTATTTTGAA 58.087 39.130 0.00 0.00 33.83 2.69
7353 10048 4.513442 CTCCGTTGGGTCATCTATTTTGA 58.487 43.478 0.00 0.00 33.83 2.69
7354 10049 3.627577 CCTCCGTTGGGTCATCTATTTTG 59.372 47.826 0.00 0.00 33.83 2.44
7355 10050 3.371595 CCCTCCGTTGGGTCATCTATTTT 60.372 47.826 2.11 0.00 42.25 1.82
7356 10051 2.172717 CCCTCCGTTGGGTCATCTATTT 59.827 50.000 2.11 0.00 42.25 1.40
7357 10052 1.768870 CCCTCCGTTGGGTCATCTATT 59.231 52.381 2.11 0.00 42.25 1.73
7358 10053 1.424638 CCCTCCGTTGGGTCATCTAT 58.575 55.000 2.11 0.00 42.25 1.98
7359 10054 2.910579 CCCTCCGTTGGGTCATCTA 58.089 57.895 2.11 0.00 42.25 1.98
7360 10055 3.727387 CCCTCCGTTGGGTCATCT 58.273 61.111 2.11 0.00 42.25 2.90
7367 10062 2.140839 AGTACTACTCCCTCCGTTGG 57.859 55.000 0.00 0.00 0.00 3.77
7368 10063 4.277921 GGATAAGTACTACTCCCTCCGTTG 59.722 50.000 11.08 0.00 0.00 4.10
7369 10064 4.079558 TGGATAAGTACTACTCCCTCCGTT 60.080 45.833 16.96 0.00 0.00 4.44
7370 10065 3.461085 TGGATAAGTACTACTCCCTCCGT 59.539 47.826 16.96 0.00 0.00 4.69
7371 10066 4.096190 TGGATAAGTACTACTCCCTCCG 57.904 50.000 16.96 0.00 0.00 4.63
7372 10067 5.244178 CACATGGATAAGTACTACTCCCTCC 59.756 48.000 16.96 8.85 0.00 4.30
7373 10068 6.016108 GTCACATGGATAAGTACTACTCCCTC 60.016 46.154 16.96 1.14 0.00 4.30
7374 10069 5.834204 GTCACATGGATAAGTACTACTCCCT 59.166 44.000 16.96 7.95 0.00 4.20
7375 10070 5.278364 CGTCACATGGATAAGTACTACTCCC 60.278 48.000 16.96 8.31 0.00 4.30
7376 10071 5.759963 CGTCACATGGATAAGTACTACTCC 58.240 45.833 14.11 14.11 0.00 3.85
7377 10072 5.213675 GCGTCACATGGATAAGTACTACTC 58.786 45.833 0.00 0.00 0.00 2.59
7427 10127 1.477685 ATCCAACCGGGTGTCTCGTT 61.478 55.000 20.34 0.00 38.11 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.