Multiple sequence alignment - TraesCS7D01G208800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G208800
chr7D
100.000
3458
0
0
1
3458
167059358
167055901
0.000000e+00
6386.0
1
TraesCS7D01G208800
chr7D
84.413
1328
192
10
998
2313
166928024
166926700
0.000000e+00
1291.0
2
TraesCS7D01G208800
chr7D
85.776
1160
155
8
1283
2434
166887091
166885934
0.000000e+00
1219.0
3
TraesCS7D01G208800
chr7D
92.188
64
3
2
2549
2612
513211546
513211607
4.750000e-14
89.8
4
TraesCS7D01G208800
chr7D
84.416
77
11
1
2536
2612
566988840
566988915
1.330000e-09
75.0
5
TraesCS7D01G208800
chr1A
87.268
1453
170
9
998
2441
20919536
20918090
0.000000e+00
1644.0
6
TraesCS7D01G208800
chr1D
86.944
1440
174
8
1009
2441
18995453
18994021
0.000000e+00
1605.0
7
TraesCS7D01G208800
chr1B
85.744
1452
194
6
998
2441
28163252
28161806
0.000000e+00
1522.0
8
TraesCS7D01G208800
chr1B
85.458
1451
200
5
998
2441
28166256
28164810
0.000000e+00
1500.0
9
TraesCS7D01G208800
chr7B
90.985
1076
73
12
262
1321
131074855
131073788
0.000000e+00
1428.0
10
TraesCS7D01G208800
chr7B
93.432
944
42
7
2190
3116
131067241
131066301
0.000000e+00
1382.0
11
TraesCS7D01G208800
chr7B
83.760
1447
220
11
1000
2434
130898363
130896920
0.000000e+00
1356.0
12
TraesCS7D01G208800
chr7B
93.895
344
20
1
3116
3458
131065459
131065116
5.120000e-143
518.0
13
TraesCS7D01G208800
chr7B
84.615
130
16
3
1
127
131074984
131074856
3.620000e-25
126.0
14
TraesCS7D01G208800
chr7A
84.342
1437
210
11
1009
2433
167987329
167985896
0.000000e+00
1393.0
15
TraesCS7D01G208800
chr7A
90.493
852
61
17
2611
3458
168257471
168256636
0.000000e+00
1107.0
16
TraesCS7D01G208800
chr6B
83.378
1480
224
14
1034
2502
21093098
21091630
0.000000e+00
1351.0
17
TraesCS7D01G208800
chr6B
93.750
64
3
1
2554
2617
610952839
610952777
1.020000e-15
95.3
18
TraesCS7D01G208800
chr6D
84.872
390
51
6
1034
1419
11192287
11191902
1.510000e-103
387.0
19
TraesCS7D01G208800
chr4D
93.333
60
3
1
2554
2612
466669438
466669379
1.710000e-13
87.9
20
TraesCS7D01G208800
chr2A
90.769
65
5
1
2548
2612
688224995
688224932
6.150000e-13
86.1
21
TraesCS7D01G208800
chr2A
89.231
65
6
1
2548
2612
688203513
688203450
2.860000e-11
80.5
22
TraesCS7D01G208800
chr2A
89.231
65
6
1
2548
2612
688214256
688214193
2.860000e-11
80.5
23
TraesCS7D01G208800
chrUn
87.500
72
6
3
2555
2625
351402398
351402329
2.860000e-11
80.5
24
TraesCS7D01G208800
chr5D
74.775
222
35
18
2616
2831
305208385
305208179
2.860000e-11
80.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G208800
chr7D
167055901
167059358
3457
True
6386
6386
100.0000
1
3458
1
chr7D.!!$R3
3457
1
TraesCS7D01G208800
chr7D
166926700
166928024
1324
True
1291
1291
84.4130
998
2313
1
chr7D.!!$R2
1315
2
TraesCS7D01G208800
chr7D
166885934
166887091
1157
True
1219
1219
85.7760
1283
2434
1
chr7D.!!$R1
1151
3
TraesCS7D01G208800
chr1A
20918090
20919536
1446
True
1644
1644
87.2680
998
2441
1
chr1A.!!$R1
1443
4
TraesCS7D01G208800
chr1D
18994021
18995453
1432
True
1605
1605
86.9440
1009
2441
1
chr1D.!!$R1
1432
5
TraesCS7D01G208800
chr1B
28161806
28166256
4450
True
1511
1522
85.6010
998
2441
2
chr1B.!!$R1
1443
6
TraesCS7D01G208800
chr7B
130896920
130898363
1443
True
1356
1356
83.7600
1000
2434
1
chr7B.!!$R1
1434
7
TraesCS7D01G208800
chr7B
131065116
131067241
2125
True
950
1382
93.6635
2190
3458
2
chr7B.!!$R2
1268
8
TraesCS7D01G208800
chr7B
131073788
131074984
1196
True
777
1428
87.8000
1
1321
2
chr7B.!!$R3
1320
9
TraesCS7D01G208800
chr7A
167985896
167987329
1433
True
1393
1393
84.3420
1009
2433
1
chr7A.!!$R1
1424
10
TraesCS7D01G208800
chr7A
168256636
168257471
835
True
1107
1107
90.4930
2611
3458
1
chr7A.!!$R2
847
11
TraesCS7D01G208800
chr6B
21091630
21093098
1468
True
1351
1351
83.3780
1034
2502
1
chr6B.!!$R1
1468
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
604
608
0.033601
TCACCCATATTGCCACCCAC
60.034
55.0
0.0
0.0
0.0
4.61
F
1352
4378
0.104120
TACCTCGATGATGGCGGTTG
59.896
55.0
0.0
0.0
0.0
3.77
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1896
4928
0.250727
TGGACAAGCACAGGTAAGCC
60.251
55.0
0.0
0.0
0.0
4.35
R
2918
5968
0.532573
GATGGTCCACGAAGCTCTCA
59.467
55.0
0.0
0.0
0.0
3.27
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
127
131
9.905713
TTTATAATACTTTTCACCTGAGCTCAT
57.094
29.630
18.63
0.00
0.00
2.90
128
132
9.905713
TTATAATACTTTTCACCTGAGCTCATT
57.094
29.630
18.63
4.31
0.00
2.57
129
133
8.814038
ATAATACTTTTCACCTGAGCTCATTT
57.186
30.769
18.63
3.90
0.00
2.32
130
134
4.843220
ACTTTTCACCTGAGCTCATTTG
57.157
40.909
18.63
16.74
0.00
2.32
131
135
4.464008
ACTTTTCACCTGAGCTCATTTGA
58.536
39.130
18.63
18.77
0.00
2.69
132
136
4.518211
ACTTTTCACCTGAGCTCATTTGAG
59.482
41.667
18.63
12.54
44.75
3.02
145
149
5.633830
CTCATTTGAGCTTTGCCTAAGAA
57.366
39.130
0.00
0.00
35.48
2.52
146
150
6.017400
CTCATTTGAGCTTTGCCTAAGAAA
57.983
37.500
0.00
0.00
35.48
2.52
147
151
5.772521
TCATTTGAGCTTTGCCTAAGAAAC
58.227
37.500
0.00
0.00
35.80
2.78
148
152
5.536161
TCATTTGAGCTTTGCCTAAGAAACT
59.464
36.000
0.00
0.00
35.80
2.66
149
153
5.438761
TTTGAGCTTTGCCTAAGAAACTC
57.561
39.130
0.00
0.00
35.80
3.01
150
154
3.412386
TGAGCTTTGCCTAAGAAACTCC
58.588
45.455
0.00
0.00
35.80
3.85
151
155
3.181445
TGAGCTTTGCCTAAGAAACTCCA
60.181
43.478
0.00
0.00
35.80
3.86
152
156
3.149981
AGCTTTGCCTAAGAAACTCCAC
58.850
45.455
0.22
0.00
35.80
4.02
153
157
2.095718
GCTTTGCCTAAGAAACTCCACG
60.096
50.000
0.22
0.00
35.80
4.94
154
158
2.922740
TTGCCTAAGAAACTCCACGT
57.077
45.000
0.00
0.00
0.00
4.49
155
159
2.450609
TGCCTAAGAAACTCCACGTC
57.549
50.000
0.00
0.00
0.00
4.34
156
160
1.001633
TGCCTAAGAAACTCCACGTCC
59.998
52.381
0.00
0.00
0.00
4.79
157
161
1.675116
GCCTAAGAAACTCCACGTCCC
60.675
57.143
0.00
0.00
0.00
4.46
158
162
1.621814
CCTAAGAAACTCCACGTCCCA
59.378
52.381
0.00
0.00
0.00
4.37
159
163
2.612221
CCTAAGAAACTCCACGTCCCAC
60.612
54.545
0.00
0.00
0.00
4.61
160
164
0.834612
AAGAAACTCCACGTCCCACA
59.165
50.000
0.00
0.00
0.00
4.17
161
165
1.056660
AGAAACTCCACGTCCCACAT
58.943
50.000
0.00
0.00
0.00
3.21
162
166
2.253610
AGAAACTCCACGTCCCACATA
58.746
47.619
0.00
0.00
0.00
2.29
163
167
2.233922
AGAAACTCCACGTCCCACATAG
59.766
50.000
0.00
0.00
0.00
2.23
164
168
0.249398
AACTCCACGTCCCACATAGC
59.751
55.000
0.00
0.00
0.00
2.97
165
169
0.614979
ACTCCACGTCCCACATAGCT
60.615
55.000
0.00
0.00
0.00
3.32
166
170
0.179100
CTCCACGTCCCACATAGCTG
60.179
60.000
0.00
0.00
0.00
4.24
167
171
1.815421
CCACGTCCCACATAGCTGC
60.815
63.158
0.00
0.00
0.00
5.25
168
172
1.079197
CACGTCCCACATAGCTGCA
60.079
57.895
1.02
0.00
0.00
4.41
169
173
1.079127
ACGTCCCACATAGCTGCAC
60.079
57.895
1.02
0.00
0.00
4.57
170
174
1.815421
CGTCCCACATAGCTGCACC
60.815
63.158
1.02
0.00
0.00
5.01
171
175
1.452108
GTCCCACATAGCTGCACCC
60.452
63.158
1.02
0.00
0.00
4.61
172
176
1.616327
TCCCACATAGCTGCACCCT
60.616
57.895
1.02
0.00
0.00
4.34
173
177
1.153086
CCCACATAGCTGCACCCTC
60.153
63.158
1.02
0.00
0.00
4.30
174
178
1.522355
CCACATAGCTGCACCCTCG
60.522
63.158
1.02
0.00
0.00
4.63
175
179
1.219124
CACATAGCTGCACCCTCGT
59.781
57.895
1.02
0.00
0.00
4.18
176
180
1.086067
CACATAGCTGCACCCTCGTG
61.086
60.000
1.02
0.00
43.35
4.35
177
181
1.219124
CATAGCTGCACCCTCGTGT
59.781
57.895
1.02
0.00
42.39
4.49
178
182
0.391661
CATAGCTGCACCCTCGTGTT
60.392
55.000
1.02
0.00
42.39
3.32
179
183
0.324943
ATAGCTGCACCCTCGTGTTT
59.675
50.000
1.02
0.00
42.39
2.83
180
184
0.320421
TAGCTGCACCCTCGTGTTTC
60.320
55.000
1.02
0.00
42.39
2.78
181
185
1.598130
GCTGCACCCTCGTGTTTCT
60.598
57.895
0.00
0.00
42.39
2.52
182
186
1.569479
GCTGCACCCTCGTGTTTCTC
61.569
60.000
0.00
0.00
42.39
2.87
183
187
0.249868
CTGCACCCTCGTGTTTCTCA
60.250
55.000
0.00
0.00
42.39
3.27
184
188
0.179234
TGCACCCTCGTGTTTCTCAA
59.821
50.000
0.00
0.00
42.39
3.02
185
189
1.305201
GCACCCTCGTGTTTCTCAAA
58.695
50.000
0.00
0.00
42.39
2.69
186
190
1.673920
GCACCCTCGTGTTTCTCAAAA
59.326
47.619
0.00
0.00
42.39
2.44
187
191
2.098443
GCACCCTCGTGTTTCTCAAAAA
59.902
45.455
0.00
0.00
42.39
1.94
188
192
3.792124
GCACCCTCGTGTTTCTCAAAAAG
60.792
47.826
0.00
0.00
42.39
2.27
189
193
3.625764
CACCCTCGTGTTTCTCAAAAAGA
59.374
43.478
0.00
0.00
35.10
2.52
190
194
4.095782
CACCCTCGTGTTTCTCAAAAAGAA
59.904
41.667
0.00
0.00
42.35
2.52
191
195
8.761811
GCACCCTCGTGTTTCTCAAAAAGAAA
62.762
42.308
0.00
0.00
44.04
2.52
199
203
3.078594
TCTCAAAAAGAAAAGCCACGC
57.921
42.857
0.00
0.00
0.00
5.34
200
204
2.127251
CTCAAAAAGAAAAGCCACGCC
58.873
47.619
0.00
0.00
0.00
5.68
201
205
1.202475
TCAAAAAGAAAAGCCACGCCC
60.202
47.619
0.00
0.00
0.00
6.13
202
206
0.827368
AAAAAGAAAAGCCACGCCCA
59.173
45.000
0.00
0.00
0.00
5.36
203
207
0.389025
AAAAGAAAAGCCACGCCCAG
59.611
50.000
0.00
0.00
0.00
4.45
204
208
1.463553
AAAGAAAAGCCACGCCCAGG
61.464
55.000
0.00
0.00
0.00
4.45
211
215
3.443045
CCACGCCCAGGCATCAAC
61.443
66.667
9.78
0.00
42.06
3.18
212
216
2.360350
CACGCCCAGGCATCAACT
60.360
61.111
9.78
0.00
42.06
3.16
213
217
2.045926
ACGCCCAGGCATCAACTC
60.046
61.111
9.78
0.00
42.06
3.01
214
218
2.270205
CGCCCAGGCATCAACTCT
59.730
61.111
9.78
0.00
42.06
3.24
215
219
1.817099
CGCCCAGGCATCAACTCTC
60.817
63.158
9.78
0.00
42.06
3.20
216
220
1.452833
GCCCAGGCATCAACTCTCC
60.453
63.158
3.12
0.00
41.49
3.71
217
221
1.919600
GCCCAGGCATCAACTCTCCT
61.920
60.000
3.12
0.00
41.49
3.69
218
222
0.107312
CCCAGGCATCAACTCTCCTG
60.107
60.000
0.00
0.00
44.25
3.86
219
223
0.617413
CCAGGCATCAACTCTCCTGT
59.383
55.000
6.41
0.00
43.38
4.00
220
224
1.406614
CCAGGCATCAACTCTCCTGTC
60.407
57.143
6.41
0.00
43.38
3.51
221
225
0.534412
AGGCATCAACTCTCCTGTCG
59.466
55.000
0.00
0.00
0.00
4.35
222
226
0.247736
GGCATCAACTCTCCTGTCGT
59.752
55.000
0.00
0.00
0.00
4.34
223
227
1.634702
GCATCAACTCTCCTGTCGTC
58.365
55.000
0.00
0.00
0.00
4.20
224
228
1.203523
GCATCAACTCTCCTGTCGTCT
59.796
52.381
0.00
0.00
0.00
4.18
225
229
2.873609
CATCAACTCTCCTGTCGTCTG
58.126
52.381
0.00
0.00
0.00
3.51
226
230
1.248486
TCAACTCTCCTGTCGTCTGG
58.752
55.000
0.00
0.00
0.00
3.86
227
231
0.962489
CAACTCTCCTGTCGTCTGGT
59.038
55.000
5.57
0.00
34.80
4.00
228
232
1.341531
CAACTCTCCTGTCGTCTGGTT
59.658
52.381
5.57
0.00
34.80
3.67
229
233
1.249407
ACTCTCCTGTCGTCTGGTTC
58.751
55.000
5.57
0.00
34.80
3.62
230
234
0.169230
CTCTCCTGTCGTCTGGTTCG
59.831
60.000
5.57
0.00
34.80
3.95
231
235
0.250597
TCTCCTGTCGTCTGGTTCGA
60.251
55.000
5.57
0.00
34.80
3.71
232
236
0.811915
CTCCTGTCGTCTGGTTCGAT
59.188
55.000
5.57
0.00
39.45
3.59
233
237
1.202582
CTCCTGTCGTCTGGTTCGATT
59.797
52.381
5.57
0.00
39.45
3.34
234
238
1.067846
TCCTGTCGTCTGGTTCGATTG
60.068
52.381
5.57
0.00
39.45
2.67
235
239
1.067846
CCTGTCGTCTGGTTCGATTGA
60.068
52.381
0.00
0.00
39.45
2.57
236
240
1.986378
CTGTCGTCTGGTTCGATTGAC
59.014
52.381
0.00
0.00
39.45
3.18
237
241
1.338655
TGTCGTCTGGTTCGATTGACA
59.661
47.619
0.00
0.00
39.45
3.58
238
242
2.029380
TGTCGTCTGGTTCGATTGACAT
60.029
45.455
0.00
0.00
39.45
3.06
239
243
2.993899
GTCGTCTGGTTCGATTGACATT
59.006
45.455
0.00
0.00
39.45
2.71
240
244
2.993220
TCGTCTGGTTCGATTGACATTG
59.007
45.455
0.00
0.00
32.30
2.82
241
245
2.993220
CGTCTGGTTCGATTGACATTGA
59.007
45.455
0.00
0.00
0.00
2.57
242
246
3.181530
CGTCTGGTTCGATTGACATTGAC
60.182
47.826
0.00
0.00
0.00
3.18
243
247
2.993220
TCTGGTTCGATTGACATTGACG
59.007
45.455
0.00
0.00
0.00
4.35
244
248
2.993220
CTGGTTCGATTGACATTGACGA
59.007
45.455
0.00
0.00
0.00
4.20
245
249
2.734606
TGGTTCGATTGACATTGACGAC
59.265
45.455
0.00
0.00
32.89
4.34
246
250
2.222508
GGTTCGATTGACATTGACGACG
60.223
50.000
0.00
0.00
32.89
5.12
247
251
2.341318
TCGATTGACATTGACGACGT
57.659
45.000
0.00
0.00
0.00
4.34
248
252
2.247637
TCGATTGACATTGACGACGTC
58.752
47.619
20.97
20.97
0.00
4.34
249
253
1.982913
CGATTGACATTGACGACGTCA
59.017
47.619
26.04
26.04
41.09
4.35
250
254
2.222289
CGATTGACATTGACGACGTCAC
60.222
50.000
29.22
18.16
42.60
3.67
251
255
1.493772
TTGACATTGACGACGTCACC
58.506
50.000
29.22
18.09
42.60
4.02
252
256
0.671796
TGACATTGACGACGTCACCT
59.328
50.000
29.22
17.05
42.60
4.00
253
257
1.335597
TGACATTGACGACGTCACCTC
60.336
52.381
29.22
21.62
42.60
3.85
254
258
0.038526
ACATTGACGACGTCACCTCC
60.039
55.000
29.22
2.46
42.60
4.30
255
259
0.038618
CATTGACGACGTCACCTCCA
60.039
55.000
29.22
15.47
42.60
3.86
256
260
0.038526
ATTGACGACGTCACCTCCAC
60.039
55.000
29.22
0.88
42.60
4.02
257
261
2.079020
TTGACGACGTCACCTCCACC
62.079
60.000
29.22
0.10
42.60
4.61
258
262
2.520020
ACGACGTCACCTCCACCA
60.520
61.111
17.16
0.00
0.00
4.17
259
263
2.079020
GACGACGTCACCTCCACCAA
62.079
60.000
22.66
0.00
32.09
3.67
260
264
1.663702
CGACGTCACCTCCACCAAC
60.664
63.158
17.16
0.00
0.00
3.77
272
276
1.589461
CACCAACAACGTCGACGGA
60.589
57.895
37.89
0.00
44.95
4.69
297
301
4.514577
CAGGCGCCGGACTTCGAT
62.515
66.667
23.19
0.00
42.43
3.59
386
390
5.527951
TGTGTCCACTTTTATTTGATGCAC
58.472
37.500
0.00
0.00
0.00
4.57
390
394
5.048083
GTCCACTTTTATTTGATGCACCTGA
60.048
40.000
0.00
0.00
0.00
3.86
398
402
8.523915
TTTATTTGATGCACCTGATTAGATGT
57.476
30.769
0.00
0.00
0.00
3.06
516
520
1.550524
TCACTCTTGTCCTTCCATCGG
59.449
52.381
0.00
0.00
0.00
4.18
520
524
2.100584
CTCTTGTCCTTCCATCGGAGAG
59.899
54.545
0.00
0.00
43.63
3.20
547
551
4.099419
ACAAAATTGTCGCTCCTTTTCCTT
59.901
37.500
0.00
0.00
36.50
3.36
548
552
4.937201
AAATTGTCGCTCCTTTTCCTTT
57.063
36.364
0.00
0.00
0.00
3.11
549
553
4.505313
AATTGTCGCTCCTTTTCCTTTC
57.495
40.909
0.00
0.00
0.00
2.62
550
554
1.892209
TGTCGCTCCTTTTCCTTTCC
58.108
50.000
0.00
0.00
0.00
3.13
551
555
1.420138
TGTCGCTCCTTTTCCTTTCCT
59.580
47.619
0.00
0.00
0.00
3.36
558
562
4.281941
GCTCCTTTTCCTTTCCTGAACAAT
59.718
41.667
0.00
0.00
0.00
2.71
565
569
4.204012
TCCTTTCCTGAACAATGAAACGT
58.796
39.130
0.00
0.00
0.00
3.99
566
570
5.369833
TCCTTTCCTGAACAATGAAACGTA
58.630
37.500
0.00
0.00
0.00
3.57
584
588
7.648112
TGAAACGTATTAGTGCATAGATCACTC
59.352
37.037
0.00
0.00
43.13
3.51
594
598
5.046735
GTGCATAGATCACTCTCACCCATAT
60.047
44.000
0.00
0.00
32.66
1.78
598
602
3.072184
AGATCACTCTCACCCATATTGCC
59.928
47.826
0.00
0.00
0.00
4.52
599
603
2.195727
TCACTCTCACCCATATTGCCA
58.804
47.619
0.00
0.00
0.00
4.92
600
604
2.092968
TCACTCTCACCCATATTGCCAC
60.093
50.000
0.00
0.00
0.00
5.01
601
605
1.212935
ACTCTCACCCATATTGCCACC
59.787
52.381
0.00
0.00
0.00
4.61
602
606
0.550914
TCTCACCCATATTGCCACCC
59.449
55.000
0.00
0.00
0.00
4.61
603
607
0.258484
CTCACCCATATTGCCACCCA
59.742
55.000
0.00
0.00
0.00
4.51
604
608
0.033601
TCACCCATATTGCCACCCAC
60.034
55.000
0.00
0.00
0.00
4.61
606
610
1.309347
CCCATATTGCCACCCACCA
59.691
57.895
0.00
0.00
0.00
4.17
607
611
0.325110
CCCATATTGCCACCCACCAA
60.325
55.000
0.00
0.00
0.00
3.67
608
612
0.823460
CCATATTGCCACCCACCAAC
59.177
55.000
0.00
0.00
0.00
3.77
609
613
1.554836
CATATTGCCACCCACCAACA
58.445
50.000
0.00
0.00
0.00
3.33
621
625
4.340950
CACCCACCAACAACTGATTAAAGT
59.659
41.667
0.00
0.00
0.00
2.66
648
652
8.613482
GCTATAATGTTCTTTGGTAGGAAAGAC
58.387
37.037
0.00
0.00
40.80
3.01
652
656
5.617252
TGTTCTTTGGTAGGAAAGACGAAT
58.383
37.500
0.00
0.00
40.80
3.34
681
685
4.340950
TCCGATACACATCAACAGCTCATA
59.659
41.667
0.00
0.00
0.00
2.15
692
696
4.692155
TCAACAGCTCATACAAGACACATG
59.308
41.667
0.00
0.00
0.00
3.21
711
715
6.974932
ACATGATCATGTGTTCTGTAAGAC
57.025
37.500
34.83
0.00
46.81
3.01
725
729
6.419484
TCTGTAAGACTGGAAACATGAGAA
57.581
37.500
0.00
0.00
38.67
2.87
755
759
8.122952
GGAAATAATGAAGTTTGTATCCACGAG
58.877
37.037
0.00
0.00
0.00
4.18
847
851
4.336889
TCGAGTGAGAATGGTTTCTTGT
57.663
40.909
0.00
0.00
42.34
3.16
858
862
6.207417
AGAATGGTTTCTTGTAATGGTGACAG
59.793
38.462
0.00
0.00
41.14
3.51
877
881
2.691409
GCATGGGCTACAACTAGTCA
57.309
50.000
0.00
0.00
36.96
3.41
878
882
2.985896
GCATGGGCTACAACTAGTCAA
58.014
47.619
0.00
0.00
36.96
3.18
879
883
2.678336
GCATGGGCTACAACTAGTCAAC
59.322
50.000
0.00
0.00
36.96
3.18
880
884
3.619979
GCATGGGCTACAACTAGTCAACT
60.620
47.826
0.00
0.00
36.96
3.16
882
886
4.796038
TGGGCTACAACTAGTCAACTAC
57.204
45.455
0.00
0.00
0.00
2.73
884
888
4.589798
TGGGCTACAACTAGTCAACTACAA
59.410
41.667
0.00
0.00
0.00
2.41
886
890
4.626172
GGCTACAACTAGTCAACTACAAGC
59.374
45.833
0.00
0.00
0.00
4.01
887
891
4.323868
GCTACAACTAGTCAACTACAAGCG
59.676
45.833
0.00
0.00
0.00
4.68
888
892
3.057734
ACAACTAGTCAACTACAAGCGC
58.942
45.455
0.00
0.00
0.00
5.92
889
893
3.057019
CAACTAGTCAACTACAAGCGCA
58.943
45.455
11.47
0.00
0.00
6.09
915
934
3.404141
AACGTTGCGGCGTGCTTTT
62.404
52.632
9.37
0.00
45.00
2.27
954
973
4.113354
GACACCTTCATCACCTACGAATC
58.887
47.826
0.00
0.00
0.00
2.52
1093
1115
4.758251
TCATCGCCGCACCACTGG
62.758
66.667
0.00
0.00
0.00
4.00
1164
1186
3.764160
CTCCCGGCTCCATGGCTTC
62.764
68.421
6.96
0.00
39.32
3.86
1176
1198
1.074775
TGGCTTCCGGCAAGTTCAT
59.925
52.632
13.06
0.00
43.40
2.57
1290
4316
3.214328
CAGGCCTAAATCTAATTGCCGT
58.786
45.455
3.98
0.00
43.56
5.68
1332
4358
0.531974
AGAACGTTCGCTTCTTGCCA
60.532
50.000
21.87
0.00
38.78
4.92
1352
4378
0.104120
TACCTCGATGATGGCGGTTG
59.896
55.000
0.00
0.00
0.00
3.77
1354
4380
1.815003
CTCGATGATGGCGGTTGCA
60.815
57.895
0.00
0.00
45.35
4.08
1451
4477
2.482374
GCGCTGCTGCTTAAGTGG
59.518
61.111
14.03
0.00
36.97
4.00
1497
4523
2.048597
TTTGCAGCCGTCGACGAT
60.049
55.556
37.65
23.10
43.02
3.73
1527
4553
0.617820
AGACGGGCATAAGTCCTGGT
60.618
55.000
0.00
0.00
37.38
4.00
1532
4558
2.482326
GCATAAGTCCTGGTGCCAC
58.518
57.895
0.00
0.00
0.00
5.01
1559
4585
0.106708
ATCGTCACCAACTGCAGTGT
59.893
50.000
22.49
12.43
35.45
3.55
1564
4590
1.486310
TCACCAACTGCAGTGTCTTCT
59.514
47.619
22.49
0.00
35.45
2.85
1565
4591
1.600957
CACCAACTGCAGTGTCTTCTG
59.399
52.381
22.49
13.55
38.35
3.02
1605
4631
4.245660
CAGACATGGTCGTGAACAAGTAT
58.754
43.478
0.00
0.00
37.67
2.12
1608
4634
6.367695
CAGACATGGTCGTGAACAAGTATAAA
59.632
38.462
0.00
0.00
37.67
1.40
1617
4643
5.220043
CGTGAACAAGTATAAACTCAGAGCG
60.220
44.000
0.00
0.00
33.75
5.03
1641
4667
1.029681
TCCGTAGCGTGCACATATCT
58.970
50.000
18.64
10.07
0.00
1.98
1835
4867
0.304705
GTGCTGTTGTCAACGTCCAG
59.695
55.000
11.03
4.16
0.00
3.86
1868
4900
4.794439
CCGGCTCACGCACATCGA
62.794
66.667
0.00
0.00
42.52
3.59
1973
5005
2.270986
CCAAGGACCTTGTGGCAGC
61.271
63.158
28.45
0.00
39.58
5.25
2014
5046
1.873591
CTAACATCACGGCAATAGGGC
59.126
52.381
0.00
0.00
39.06
5.19
2046
5078
2.186384
CCCTCGGAGAAGCTGCTG
59.814
66.667
0.00
0.00
34.09
4.41
2107
5139
7.179338
GGAGAAAGATCAAGCTATATGTCCCTA
59.821
40.741
0.00
0.00
0.00
3.53
2184
5216
1.154413
CGCGGTGCAAACTAGCTTG
60.154
57.895
0.00
1.31
34.99
4.01
2272
5312
3.498397
CAGTTCATTGTGGTACGAGCTTT
59.502
43.478
0.00
0.00
0.00
3.51
2452
5497
3.695060
TCCTCTGAACATCTCGGAAGTAC
59.305
47.826
0.00
0.00
39.04
2.73
2543
5591
6.255215
CAACAACGAACAATACTTTCACAGT
58.745
36.000
0.00
0.00
39.87
3.55
2575
5623
4.938575
TTTATGGGTGTGGTTAGGTCAT
57.061
40.909
0.00
0.00
0.00
3.06
2580
5628
2.159142
GGGTGTGGTTAGGTCATAGTCG
60.159
54.545
0.00
0.00
0.00
4.18
2619
5668
5.440610
AGTCTCAGTCAAGTGACCATTTTT
58.559
37.500
7.82
0.00
45.85
1.94
2622
5671
7.556275
AGTCTCAGTCAAGTGACCATTTTTAAA
59.444
33.333
7.82
0.00
45.85
1.52
2623
5672
8.188139
GTCTCAGTCAAGTGACCATTTTTAAAA
58.812
33.333
7.82
0.00
45.85
1.52
2768
5817
8.125728
TCCGAAACACTTTTCAAAATTCATTC
57.874
30.769
0.00
0.00
41.22
2.67
2938
5988
0.179097
GAGAGCTTCGTGGACCATCC
60.179
60.000
0.00
0.00
36.96
3.51
2947
5997
1.408683
CGTGGACCATCCCATGTGAAT
60.409
52.381
0.00
0.00
38.66
2.57
3127
7020
7.409697
CACCCAACATGATATACGAAGAAAAG
58.590
38.462
0.00
0.00
0.00
2.27
3232
7126
2.975799
GGGTGAAAAGTGGCGCGA
60.976
61.111
12.10
0.00
0.00
5.87
3233
7127
2.548295
GGGTGAAAAGTGGCGCGAA
61.548
57.895
12.10
0.00
0.00
4.70
3274
7170
7.287927
CCTCTAATTGGACATGACTAGGAACTA
59.712
40.741
0.00
0.00
41.75
2.24
3286
7182
7.330900
TGACTAGGAACTATAAGACCTTTCG
57.669
40.000
0.00
0.00
41.70
3.46
3387
7283
9.903682
ACAAATGATGAAAGTGTCTCTTAAATG
57.096
29.630
0.00
0.00
35.02
2.32
3432
7328
5.901276
ACCTAGTGTTAAGATAATCCGGGAA
59.099
40.000
0.00
0.00
0.00
3.97
3439
7335
6.155565
TGTTAAGATAATCCGGGAAGAGTGAA
59.844
38.462
0.00
0.00
0.00
3.18
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
107
111
6.240894
TCAAATGAGCTCAGGTGAAAAGTAT
58.759
36.000
22.96
0.00
0.00
2.12
127
131
4.278419
GGAGTTTCTTAGGCAAAGCTCAAA
59.722
41.667
0.00
0.00
34.97
2.69
128
132
3.821033
GGAGTTTCTTAGGCAAAGCTCAA
59.179
43.478
0.00
0.00
34.97
3.02
129
133
3.181445
TGGAGTTTCTTAGGCAAAGCTCA
60.181
43.478
0.00
0.00
34.97
4.26
130
134
3.189495
GTGGAGTTTCTTAGGCAAAGCTC
59.811
47.826
0.00
0.00
34.97
4.09
131
135
3.149981
GTGGAGTTTCTTAGGCAAAGCT
58.850
45.455
0.00
0.00
34.97
3.74
132
136
2.095718
CGTGGAGTTTCTTAGGCAAAGC
60.096
50.000
0.00
0.00
34.97
3.51
133
137
3.139077
ACGTGGAGTTTCTTAGGCAAAG
58.861
45.455
0.00
0.00
36.45
2.77
134
138
3.135994
GACGTGGAGTTTCTTAGGCAAA
58.864
45.455
0.00
0.00
0.00
3.68
135
139
2.549349
GGACGTGGAGTTTCTTAGGCAA
60.549
50.000
0.00
0.00
0.00
4.52
136
140
1.001633
GGACGTGGAGTTTCTTAGGCA
59.998
52.381
0.00
0.00
0.00
4.75
137
141
1.675116
GGGACGTGGAGTTTCTTAGGC
60.675
57.143
0.00
0.00
0.00
3.93
138
142
1.621814
TGGGACGTGGAGTTTCTTAGG
59.378
52.381
0.00
0.00
0.00
2.69
139
143
2.036733
TGTGGGACGTGGAGTTTCTTAG
59.963
50.000
0.00
0.00
0.00
2.18
140
144
2.040939
TGTGGGACGTGGAGTTTCTTA
58.959
47.619
0.00
0.00
0.00
2.10
141
145
0.834612
TGTGGGACGTGGAGTTTCTT
59.165
50.000
0.00
0.00
0.00
2.52
142
146
1.056660
ATGTGGGACGTGGAGTTTCT
58.943
50.000
0.00
0.00
0.00
2.52
143
147
2.618053
CTATGTGGGACGTGGAGTTTC
58.382
52.381
0.00
0.00
0.00
2.78
144
148
1.338769
GCTATGTGGGACGTGGAGTTT
60.339
52.381
0.00
0.00
0.00
2.66
145
149
0.249398
GCTATGTGGGACGTGGAGTT
59.751
55.000
0.00
0.00
0.00
3.01
146
150
0.614979
AGCTATGTGGGACGTGGAGT
60.615
55.000
0.00
0.00
0.00
3.85
147
151
0.179100
CAGCTATGTGGGACGTGGAG
60.179
60.000
0.00
0.00
0.00
3.86
148
152
1.897423
CAGCTATGTGGGACGTGGA
59.103
57.895
0.00
0.00
0.00
4.02
149
153
1.815421
GCAGCTATGTGGGACGTGG
60.815
63.158
0.00
0.00
0.00
4.94
150
154
1.079197
TGCAGCTATGTGGGACGTG
60.079
57.895
0.00
0.00
0.00
4.49
151
155
1.079127
GTGCAGCTATGTGGGACGT
60.079
57.895
0.00
0.00
0.00
4.34
152
156
1.815421
GGTGCAGCTATGTGGGACG
60.815
63.158
9.07
0.00
0.00
4.79
153
157
1.452108
GGGTGCAGCTATGTGGGAC
60.452
63.158
16.65
0.00
0.00
4.46
154
158
1.616327
AGGGTGCAGCTATGTGGGA
60.616
57.895
16.65
0.00
0.00
4.37
155
159
1.153086
GAGGGTGCAGCTATGTGGG
60.153
63.158
16.65
0.00
0.00
4.61
156
160
1.522355
CGAGGGTGCAGCTATGTGG
60.522
63.158
16.65
0.00
0.00
4.17
157
161
1.086067
CACGAGGGTGCAGCTATGTG
61.086
60.000
16.65
16.37
37.35
3.21
158
162
1.219124
CACGAGGGTGCAGCTATGT
59.781
57.895
16.65
8.62
37.35
2.29
159
163
4.115279
CACGAGGGTGCAGCTATG
57.885
61.111
16.65
7.97
37.35
2.23
166
170
7.387016
TTCTTTTTGAGAAACACGAGGGTGC
62.387
44.000
0.00
0.00
42.41
5.01
167
171
4.095782
TTCTTTTTGAGAAACACGAGGGTG
59.904
41.667
0.00
0.00
43.34
4.61
168
172
3.881220
TCTTTTTGAGAAACACGAGGGT
58.119
40.909
0.00
0.00
0.00
4.34
169
173
4.893424
TTCTTTTTGAGAAACACGAGGG
57.107
40.909
0.00
0.00
41.34
4.30
178
182
3.443976
GCGTGGCTTTTCTTTTTGAGAA
58.556
40.909
0.00
0.00
42.56
2.87
179
183
2.223711
GGCGTGGCTTTTCTTTTTGAGA
60.224
45.455
0.00
0.00
0.00
3.27
180
184
2.127251
GGCGTGGCTTTTCTTTTTGAG
58.873
47.619
0.00
0.00
0.00
3.02
181
185
1.202475
GGGCGTGGCTTTTCTTTTTGA
60.202
47.619
0.00
0.00
0.00
2.69
182
186
1.217001
GGGCGTGGCTTTTCTTTTTG
58.783
50.000
0.00
0.00
0.00
2.44
183
187
0.827368
TGGGCGTGGCTTTTCTTTTT
59.173
45.000
0.00
0.00
0.00
1.94
184
188
0.389025
CTGGGCGTGGCTTTTCTTTT
59.611
50.000
0.00
0.00
0.00
2.27
185
189
1.463553
CCTGGGCGTGGCTTTTCTTT
61.464
55.000
0.00
0.00
0.00
2.52
186
190
1.903404
CCTGGGCGTGGCTTTTCTT
60.903
57.895
0.00
0.00
0.00
2.52
187
191
2.282462
CCTGGGCGTGGCTTTTCT
60.282
61.111
0.00
0.00
0.00
2.52
188
192
4.056125
GCCTGGGCGTGGCTTTTC
62.056
66.667
11.39
0.00
46.38
2.29
194
198
3.443045
GTTGATGCCTGGGCGTGG
61.443
66.667
11.37
0.00
45.51
4.94
195
199
2.360350
AGTTGATGCCTGGGCGTG
60.360
61.111
11.37
0.00
45.51
5.34
196
200
2.045926
GAGTTGATGCCTGGGCGT
60.046
61.111
5.98
5.98
45.51
5.68
197
201
1.817099
GAGAGTTGATGCCTGGGCG
60.817
63.158
7.14
0.00
45.51
6.13
198
202
1.452833
GGAGAGTTGATGCCTGGGC
60.453
63.158
4.43
4.43
42.35
5.36
199
203
0.107312
CAGGAGAGTTGATGCCTGGG
60.107
60.000
0.00
0.00
43.22
4.45
200
204
3.473147
CAGGAGAGTTGATGCCTGG
57.527
57.895
0.00
0.00
43.22
4.45
202
206
0.534412
CGACAGGAGAGTTGATGCCT
59.466
55.000
0.00
0.00
0.00
4.75
203
207
0.247736
ACGACAGGAGAGTTGATGCC
59.752
55.000
0.00
0.00
0.00
4.40
204
208
1.203523
AGACGACAGGAGAGTTGATGC
59.796
52.381
0.00
0.00
0.00
3.91
205
209
2.416566
CCAGACGACAGGAGAGTTGATG
60.417
54.545
0.00
0.00
0.00
3.07
206
210
1.821753
CCAGACGACAGGAGAGTTGAT
59.178
52.381
0.00
0.00
0.00
2.57
207
211
1.248486
CCAGACGACAGGAGAGTTGA
58.752
55.000
0.00
0.00
0.00
3.18
208
212
0.962489
ACCAGACGACAGGAGAGTTG
59.038
55.000
2.94
0.00
0.00
3.16
209
213
1.614413
GAACCAGACGACAGGAGAGTT
59.386
52.381
2.94
0.00
0.00
3.01
210
214
1.249407
GAACCAGACGACAGGAGAGT
58.751
55.000
2.94
0.00
0.00
3.24
211
215
0.169230
CGAACCAGACGACAGGAGAG
59.831
60.000
2.94
0.00
0.00
3.20
212
216
0.250597
TCGAACCAGACGACAGGAGA
60.251
55.000
2.94
0.00
34.85
3.71
213
217
0.811915
ATCGAACCAGACGACAGGAG
59.188
55.000
2.94
0.00
42.37
3.69
214
218
1.067846
CAATCGAACCAGACGACAGGA
60.068
52.381
2.94
0.00
42.37
3.86
215
219
1.067846
TCAATCGAACCAGACGACAGG
60.068
52.381
0.00
0.00
42.37
4.00
216
220
1.986378
GTCAATCGAACCAGACGACAG
59.014
52.381
0.00
0.00
42.37
3.51
217
221
1.338655
TGTCAATCGAACCAGACGACA
59.661
47.619
0.00
0.00
42.37
4.35
218
222
2.060326
TGTCAATCGAACCAGACGAC
57.940
50.000
0.00
0.00
42.37
4.34
219
223
2.993220
CAATGTCAATCGAACCAGACGA
59.007
45.455
0.00
0.00
43.65
4.20
220
224
2.993220
TCAATGTCAATCGAACCAGACG
59.007
45.455
0.00
0.00
33.83
4.18
221
225
3.181530
CGTCAATGTCAATCGAACCAGAC
60.182
47.826
0.00
0.00
0.00
3.51
222
226
2.993220
CGTCAATGTCAATCGAACCAGA
59.007
45.455
0.00
0.00
0.00
3.86
223
227
2.993220
TCGTCAATGTCAATCGAACCAG
59.007
45.455
0.00
0.00
0.00
4.00
224
228
2.734606
GTCGTCAATGTCAATCGAACCA
59.265
45.455
0.00
0.00
32.56
3.67
225
229
2.222508
CGTCGTCAATGTCAATCGAACC
60.223
50.000
0.00
0.00
32.56
3.62
226
230
2.407361
ACGTCGTCAATGTCAATCGAAC
59.593
45.455
0.00
0.00
32.56
3.95
227
231
2.659757
GACGTCGTCAATGTCAATCGAA
59.340
45.455
20.28
0.00
42.52
3.71
228
232
2.247637
GACGTCGTCAATGTCAATCGA
58.752
47.619
20.28
0.00
42.52
3.59
229
233
2.678443
GACGTCGTCAATGTCAATCG
57.322
50.000
20.28
0.00
42.52
3.34
234
238
1.337821
GAGGTGACGTCGTCAATGTC
58.662
55.000
28.48
20.03
44.49
3.06
235
239
0.038526
GGAGGTGACGTCGTCAATGT
60.039
55.000
28.48
16.12
44.49
2.71
236
240
0.038618
TGGAGGTGACGTCGTCAATG
60.039
55.000
28.48
0.00
44.49
2.82
237
241
0.038526
GTGGAGGTGACGTCGTCAAT
60.039
55.000
28.48
20.03
44.49
2.57
238
242
1.361271
GTGGAGGTGACGTCGTCAA
59.639
57.895
28.48
11.02
44.49
3.18
239
243
2.558286
GGTGGAGGTGACGTCGTCA
61.558
63.158
23.70
23.70
40.50
4.35
240
244
2.079020
TTGGTGGAGGTGACGTCGTC
62.079
60.000
18.51
18.51
0.00
4.20
241
245
2.129146
TTGGTGGAGGTGACGTCGT
61.129
57.895
11.62
0.00
0.00
4.34
242
246
1.663702
GTTGGTGGAGGTGACGTCG
60.664
63.158
11.62
0.00
0.00
5.12
243
247
0.179067
TTGTTGGTGGAGGTGACGTC
60.179
55.000
9.11
9.11
0.00
4.34
244
248
0.463116
GTTGTTGGTGGAGGTGACGT
60.463
55.000
0.00
0.00
0.00
4.34
245
249
1.495584
CGTTGTTGGTGGAGGTGACG
61.496
60.000
0.00
0.00
0.00
4.35
246
250
0.463116
ACGTTGTTGGTGGAGGTGAC
60.463
55.000
0.00
0.00
0.00
3.67
247
251
0.179067
GACGTTGTTGGTGGAGGTGA
60.179
55.000
0.00
0.00
0.00
4.02
248
252
1.495584
CGACGTTGTTGGTGGAGGTG
61.496
60.000
0.00
0.00
0.00
4.00
249
253
1.227438
CGACGTTGTTGGTGGAGGT
60.227
57.895
0.00
0.00
0.00
3.85
250
254
1.068417
TCGACGTTGTTGGTGGAGG
59.932
57.895
1.96
0.00
0.00
4.30
251
255
1.545614
CGTCGACGTTGTTGGTGGAG
61.546
60.000
29.08
0.00
34.11
3.86
252
256
1.589461
CGTCGACGTTGTTGGTGGA
60.589
57.895
29.08
0.00
34.11
4.02
253
257
2.591311
CCGTCGACGTTGTTGGTGG
61.591
63.158
33.49
13.35
37.74
4.61
254
258
1.589461
TCCGTCGACGTTGTTGGTG
60.589
57.895
33.49
17.32
37.74
4.17
255
259
1.589727
GTCCGTCGACGTTGTTGGT
60.590
57.895
33.49
0.00
37.74
3.67
256
260
3.227667
GTCCGTCGACGTTGTTGG
58.772
61.111
33.49
18.72
37.74
3.77
280
284
4.514577
ATCGAAGTCCGGCGCCTG
62.515
66.667
26.68
19.63
39.14
4.85
288
292
5.237779
CCTAGTCTACTCTTCATCGAAGTCC
59.762
48.000
3.81
0.00
40.24
3.85
293
297
4.706035
GACCCTAGTCTACTCTTCATCGA
58.294
47.826
0.00
0.00
40.10
3.59
297
301
2.575279
ACCGACCCTAGTCTACTCTTCA
59.425
50.000
0.00
0.00
41.16
3.02
359
363
8.363390
TGCATCAAATAAAAGTGGACACAATAA
58.637
29.630
5.14
0.00
0.00
1.40
386
390
3.006752
GGAGAGCTGGACATCTAATCAGG
59.993
52.174
0.00
0.00
0.00
3.86
390
394
5.221621
GCTTTAGGAGAGCTGGACATCTAAT
60.222
44.000
0.00
0.00
37.18
1.73
516
520
4.606457
AGCGACAATTTTGTATGCTCTC
57.394
40.909
13.78
0.00
44.62
3.20
520
524
3.764885
AGGAGCGACAATTTTGTATGC
57.235
42.857
10.52
10.52
42.43
3.14
547
551
7.572353
GCACTAATACGTTTCATTGTTCAGGAA
60.572
37.037
0.00
0.00
0.00
3.36
548
552
6.128391
GCACTAATACGTTTCATTGTTCAGGA
60.128
38.462
0.00
0.00
0.00
3.86
549
553
6.021596
GCACTAATACGTTTCATTGTTCAGG
58.978
40.000
0.00
0.00
0.00
3.86
550
554
6.598525
TGCACTAATACGTTTCATTGTTCAG
58.401
36.000
0.00
0.00
0.00
3.02
551
555
6.546972
TGCACTAATACGTTTCATTGTTCA
57.453
33.333
0.00
0.00
0.00
3.18
558
562
7.489160
AGTGATCTATGCACTAATACGTTTCA
58.511
34.615
0.00
0.00
44.27
2.69
565
569
6.209589
GGGTGAGAGTGATCTATGCACTAATA
59.790
42.308
0.00
0.00
45.94
0.98
566
570
5.011533
GGGTGAGAGTGATCTATGCACTAAT
59.988
44.000
0.00
0.00
45.94
1.73
584
588
0.258484
TGGGTGGCAATATGGGTGAG
59.742
55.000
0.00
0.00
0.00
3.51
594
598
1.000993
AGTTGTTGGTGGGTGGCAA
59.999
52.632
0.00
0.00
0.00
4.52
598
602
4.340950
ACTTTAATCAGTTGTTGGTGGGTG
59.659
41.667
0.00
0.00
0.00
4.61
599
603
4.340950
CACTTTAATCAGTTGTTGGTGGGT
59.659
41.667
0.00
0.00
0.00
4.51
600
604
4.795962
GCACTTTAATCAGTTGTTGGTGGG
60.796
45.833
0.00
0.00
0.00
4.61
601
605
4.037923
AGCACTTTAATCAGTTGTTGGTGG
59.962
41.667
0.00
0.00
0.00
4.61
602
606
5.186996
AGCACTTTAATCAGTTGTTGGTG
57.813
39.130
0.00
0.00
0.00
4.17
603
607
8.630054
TTATAGCACTTTAATCAGTTGTTGGT
57.370
30.769
0.00
0.00
0.00
3.67
604
608
9.507280
CATTATAGCACTTTAATCAGTTGTTGG
57.493
33.333
0.00
0.00
0.00
3.77
621
625
8.325787
TCTTTCCTACCAAAGAACATTATAGCA
58.674
33.333
0.00
0.00
39.06
3.49
648
652
5.758924
TGATGTGTATCGGAGACTAATTCG
58.241
41.667
4.23
0.00
42.51
3.34
652
656
5.678871
GCTGTTGATGTGTATCGGAGACTAA
60.679
44.000
4.23
0.00
42.51
2.24
692
696
5.724328
TCCAGTCTTACAGAACACATGATC
58.276
41.667
0.00
0.00
0.00
2.92
755
759
2.075338
ACGTCTTCTAGACTCGTGGTC
58.925
52.381
12.92
3.77
42.92
4.02
801
805
2.156917
CATGCACCATCTTGTGACAGT
58.843
47.619
0.00
0.00
38.55
3.55
847
851
3.189568
GCCCATGCTGTCACCATTA
57.810
52.632
0.00
0.00
33.53
1.90
858
862
2.678336
GTTGACTAGTTGTAGCCCATGC
59.322
50.000
0.00
0.00
37.95
4.06
874
878
1.606606
GCATTGCGCTTGTAGTTGAC
58.393
50.000
9.73
0.00
37.77
3.18
887
891
2.696521
CGCAACGTTCACGCATTGC
61.697
57.895
14.45
14.45
43.40
3.56
888
892
2.074353
CCGCAACGTTCACGCATTG
61.074
57.895
13.36
0.00
44.43
2.82
889
893
2.251075
CCGCAACGTTCACGCATT
59.749
55.556
13.36
0.00
44.43
3.56
897
916
2.049475
TAAAAGCACGCCGCAACGTT
62.049
50.000
0.00
0.00
45.75
3.99
915
934
5.021458
AGGTGTCGGAACTTAGGAGATTTA
58.979
41.667
0.00
0.00
0.00
1.40
954
973
0.315869
GTGTCGTGGCTTCGTTGTTG
60.316
55.000
3.16
0.00
0.00
3.33
990
1009
4.394300
GGTGAGATGACCATGTTTCTGAAG
59.606
45.833
0.00
0.00
35.88
3.02
1164
1186
1.813513
AGAAGACATGAACTTGCCGG
58.186
50.000
0.00
0.00
0.00
6.13
1170
1192
1.072331
ACGGCCAAGAAGACATGAACT
59.928
47.619
2.24
0.00
0.00
3.01
1176
1198
1.416401
AGAAAGACGGCCAAGAAGACA
59.584
47.619
2.24
0.00
0.00
3.41
1243
4269
3.441496
AGAGTAGTCGACGAGGTAGAG
57.559
52.381
10.46
0.00
0.00
2.43
1290
4316
4.205683
CCACCAAGGATCCTATGGAGACA
61.206
52.174
32.56
0.00
43.43
3.41
1332
4358
1.048601
AACCGCCATCATCGAGGTAT
58.951
50.000
0.00
0.00
34.35
2.73
1352
4378
1.135315
ATGCGCGTCATGAAGTTGC
59.865
52.632
8.43
16.65
33.26
4.17
1476
4502
1.710339
GTCGACGGCTGCAAAGATC
59.290
57.895
0.00
0.00
0.00
2.75
1497
4523
2.342279
CCCGTCTTGGCGAACAGA
59.658
61.111
0.00
0.00
35.87
3.41
1559
4585
4.689549
TCGGGGTCGGGCAGAAGA
62.690
66.667
0.00
0.00
36.95
2.87
1584
4610
2.910688
ACTTGTTCACGACCATGTCT
57.089
45.000
0.00
0.00
0.00
3.41
1605
4631
2.961526
GGATGTCCGCTCTGAGTTTA
57.038
50.000
6.53
0.00
0.00
2.01
1617
4643
2.165301
GTGCACGCTACGGATGTCC
61.165
63.158
0.00
0.00
0.00
4.02
1626
4652
1.408969
TCCCAGATATGTGCACGCTA
58.591
50.000
13.13
6.89
0.00
4.26
1747
4779
3.195661
GGTTCTTGCCGGTATAGTTGAG
58.804
50.000
1.90
0.00
0.00
3.02
1822
4854
1.068417
CGGACCTGGACGTTGACAA
59.932
57.895
0.00
0.00
0.00
3.18
1827
4859
2.732658
GACACGGACCTGGACGTT
59.267
61.111
16.02
9.55
42.04
3.99
1835
4867
4.754667
GGAAGCGGGACACGGACC
62.755
72.222
0.00
0.00
44.51
4.46
1896
4928
0.250727
TGGACAAGCACAGGTAAGCC
60.251
55.000
0.00
0.00
0.00
4.35
1991
5023
1.526887
CTATTGCCGTGATGTTAGCCG
59.473
52.381
0.00
0.00
0.00
5.52
1995
5027
1.476110
GGCCCTATTGCCGTGATGTTA
60.476
52.381
0.00
0.00
42.54
2.41
2046
5078
2.169179
GCAATGAACGAGATCGCAAAC
58.831
47.619
1.39
0.00
44.43
2.93
2082
5114
7.003402
AGGGACATATAGCTTGATCTTTCTC
57.997
40.000
0.00
0.00
0.00
2.87
2107
5139
2.340328
GGAAGGCCGTGCGGAAATT
61.340
57.895
15.45
5.05
37.50
1.82
2184
5216
3.553511
CCACGTCTTCATCTGATAAGCAC
59.446
47.826
0.00
0.00
0.00
4.40
2272
5312
1.770658
CCTCTTGGCCTCCATGTATGA
59.229
52.381
3.32
0.00
31.53
2.15
2452
5497
1.665679
ACGTGCATGATCCTTTTAGCG
59.334
47.619
14.17
0.00
0.00
4.26
2507
5552
6.503616
TGTTCGTTGTTGCAATAACAAATC
57.496
33.333
30.45
19.48
41.23
2.17
2565
5613
4.035441
GTCTCAGTCGACTATGACCTAACC
59.965
50.000
26.55
10.88
39.77
2.85
2566
5614
4.877251
AGTCTCAGTCGACTATGACCTAAC
59.123
45.833
30.05
16.84
42.19
2.34
2575
5623
5.068636
ACTTGGTTAAGTCTCAGTCGACTA
58.931
41.667
19.57
0.00
43.53
2.59
2858
5908
7.704899
GCTCCACTGTTAACTTGTAAAATGTTT
59.295
33.333
7.22
0.00
0.00
2.83
2918
5968
0.532573
GATGGTCCACGAAGCTCTCA
59.467
55.000
0.00
0.00
0.00
3.27
2938
5988
2.946990
TGCTGCTATGACATTCACATGG
59.053
45.455
0.00
0.00
34.27
3.66
2947
5997
3.018856
CCTTGGAATTGCTGCTATGACA
58.981
45.455
0.00
0.00
0.00
3.58
3093
6144
6.747414
ATATCATGTTGGGTGCTACTAGAA
57.253
37.500
0.00
0.00
0.00
2.10
3127
7020
6.128769
GGTTTTTAATTATGTTTCGGTGGTGC
60.129
38.462
0.00
0.00
0.00
5.01
3158
7052
7.721402
TGTGGTCTTTTTGTTTTATATGTGCT
58.279
30.769
0.00
0.00
0.00
4.40
3232
7126
1.140252
AGAGGCTAACGTGTGGTTGTT
59.860
47.619
0.00
0.00
39.75
2.83
3233
7127
0.756903
AGAGGCTAACGTGTGGTTGT
59.243
50.000
0.00
0.00
39.75
3.32
3274
7170
4.995487
GTGAAACACTCCGAAAGGTCTTAT
59.005
41.667
0.00
0.00
45.88
1.73
3286
7182
3.476552
TGATGTTGAGGTGAAACACTCC
58.523
45.455
0.00
0.00
40.16
3.85
3387
7283
2.580867
CGCCTGCGTGTAGAGCTC
60.581
66.667
5.27
5.27
35.28
4.09
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.