Multiple sequence alignment - TraesCS7D01G208400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G208400 chr7D 100.000 4625 0 0 1 4625 166205301 166200677 0.000000e+00 8541.0
1 TraesCS7D01G208400 chr7D 89.754 1259 59 26 615 1828 165944240 165945473 0.000000e+00 1546.0
2 TraesCS7D01G208400 chr7D 80.776 593 68 26 2252 2821 165946105 165946674 5.530000e-114 422.0
3 TraesCS7D01G208400 chr7D 80.446 404 51 20 3273 3661 165947481 165947871 2.720000e-72 283.0
4 TraesCS7D01G208400 chr7D 95.098 102 5 0 11 112 32673811 32673710 1.330000e-35 161.0
5 TraesCS7D01G208400 chr7D 91.089 101 8 1 330 429 165943323 165943423 8.070000e-28 135.0
6 TraesCS7D01G208400 chr7D 94.186 86 3 2 332 415 165944137 165944222 3.760000e-26 130.0
7 TraesCS7D01G208400 chr7D 94.828 58 2 1 613 669 165943417 165943474 6.370000e-14 89.8
8 TraesCS7D01G208400 chr7D 82.243 107 3 5 108 212 165943892 165943984 1.380000e-10 78.7
9 TraesCS7D01G208400 chr7B 87.337 3688 247 89 735 4312 130504303 130500726 0.000000e+00 4021.0
10 TraesCS7D01G208400 chr7B 89.779 1223 60 23 613 1796 130120224 130121420 0.000000e+00 1506.0
11 TraesCS7D01G208400 chr7B 80.146 821 106 36 2866 3655 130124803 130125597 1.120000e-155 560.0
12 TraesCS7D01G208400 chr7B 83.170 612 77 20 2229 2821 130121769 130122373 1.890000e-148 536.0
13 TraesCS7D01G208400 chr7B 87.761 335 25 10 105 429 130505014 130504686 1.210000e-100 377.0
14 TraesCS7D01G208400 chr7B 84.518 394 48 6 1026 1408 609704071 609704462 1.210000e-100 377.0
15 TraesCS7D01G208400 chr7B 85.079 315 44 3 4312 4625 337111267 337110955 7.470000e-83 318.0
16 TraesCS7D01G208400 chr7B 75.551 544 75 33 3127 3655 130186582 130187082 1.010000e-51 215.0
17 TraesCS7D01G208400 chr7B 90.260 154 5 2 467 610 583586346 583586499 4.720000e-45 193.0
18 TraesCS7D01G208400 chr7B 89.344 122 9 4 611 729 130504694 130504574 2.880000e-32 150.0
19 TraesCS7D01G208400 chr7B 83.237 173 12 8 259 429 130119249 130119406 4.820000e-30 143.0
20 TraesCS7D01G208400 chr7B 96.491 57 2 0 613 669 130119400 130119456 1.370000e-15 95.3
21 TraesCS7D01G208400 chr7A 93.391 1044 41 8 791 1808 167680297 167681338 0.000000e+00 1520.0
22 TraesCS7D01G208400 chr7A 86.466 1426 90 33 611 1968 167736578 167735188 0.000000e+00 1469.0
23 TraesCS7D01G208400 chr7A 91.556 900 56 8 3729 4625 167732887 167732005 0.000000e+00 1223.0
24 TraesCS7D01G208400 chr7A 91.775 693 44 9 2579 3267 167734063 167733380 0.000000e+00 952.0
25 TraesCS7D01G208400 chr7A 90.244 451 36 5 3210 3657 167733365 167732920 2.400000e-162 582.0
26 TraesCS7D01G208400 chr7A 81.854 507 69 19 2334 2821 167681916 167682418 5.570000e-109 405.0
27 TraesCS7D01G208400 chr7A 88.822 331 13 9 117 429 167736894 167736570 7.260000e-103 385.0
28 TraesCS7D01G208400 chr7A 79.404 403 50 27 3269 3654 167682998 167683384 2.140000e-63 254.0
29 TraesCS7D01G208400 chr7A 89.560 182 14 3 2259 2439 167734960 167734783 4.660000e-55 226.0
30 TraesCS7D01G208400 chr7A 90.511 137 10 2 1977 2113 167735205 167735072 1.320000e-40 178.0
31 TraesCS7D01G208400 chr7A 76.608 342 42 22 105 429 167679024 167679344 2.230000e-33 154.0
32 TraesCS7D01G208400 chr7A 89.815 108 8 2 105 212 167679798 167679902 8.070000e-28 135.0
33 TraesCS7D01G208400 chr7A 100.000 28 0 0 585 612 654561379 654561406 8.000000e-03 52.8
34 TraesCS7D01G208400 chr6D 83.594 512 59 6 905 1408 414241829 414241335 1.520000e-124 457.0
35 TraesCS7D01G208400 chr6D 96.907 97 3 0 13 109 259920986 259920890 3.700000e-36 163.0
36 TraesCS7D01G208400 chr6D 96.907 97 3 0 13 109 345168572 345168668 3.700000e-36 163.0
37 TraesCS7D01G208400 chr6D 91.964 112 6 3 13 124 288540346 288540454 2.230000e-33 154.0
38 TraesCS7D01G208400 chr5B 89.623 318 30 3 4308 4625 18326056 18325742 7.210000e-108 401.0
39 TraesCS7D01G208400 chr6A 78.897 526 74 24 1001 1491 524868425 524867902 5.770000e-84 322.0
40 TraesCS7D01G208400 chr6B 83.140 344 50 7 1001 1337 573161732 573161390 1.620000e-79 307.0
41 TraesCS7D01G208400 chr6B 88.442 199 21 2 2623 2821 462306287 462306483 5.980000e-59 239.0
42 TraesCS7D01G208400 chr6B 82.609 207 20 7 2992 3182 462306637 462306843 7.960000e-38 169.0
43 TraesCS7D01G208400 chr6B 95.098 102 5 0 11 112 245700062 245699961 1.330000e-35 161.0
44 TraesCS7D01G208400 chr1D 97.561 164 3 1 448 610 357211501 357211664 3.520000e-71 279.0
45 TraesCS7D01G208400 chr1D 96.907 97 3 0 13 109 85675573 85675477 3.700000e-36 163.0
46 TraesCS7D01G208400 chr1D 96.907 97 3 0 13 109 196353402 196353498 3.700000e-36 163.0
47 TraesCS7D01G208400 chr3B 91.398 186 14 1 430 613 825609131 825608946 2.140000e-63 254.0
48 TraesCS7D01G208400 chr3B 86.935 199 25 1 2623 2821 602907361 602907558 6.020000e-54 222.0
49 TraesCS7D01G208400 chr3B 82.039 206 22 7 2992 3182 602907724 602907929 1.330000e-35 161.0
50 TraesCS7D01G208400 chr1B 91.848 184 11 3 430 610 29367891 29368073 2.140000e-63 254.0
51 TraesCS7D01G208400 chr2A 91.758 182 12 2 432 610 4068715 4068534 2.760000e-62 250.0
52 TraesCS7D01G208400 chr4B 97.260 146 4 0 466 611 599825648 599825503 9.940000e-62 248.0
53 TraesCS7D01G208400 chr4B 88.945 199 20 2 2623 2821 638663343 638663539 1.290000e-60 244.0
54 TraesCS7D01G208400 chr4B 86.449 214 24 4 4106 4316 622842422 622842633 3.600000e-56 230.0
55 TraesCS7D01G208400 chr5D 96.000 100 4 0 13 112 482193393 482193492 3.700000e-36 163.0
56 TraesCS7D01G208400 chr4A 89.167 120 11 2 14 133 458519058 458519175 1.040000e-31 148.0
57 TraesCS7D01G208400 chr2B 77.228 202 42 4 4308 4508 520061664 520061466 1.050000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G208400 chr7D 166200677 166205301 4624 True 8541.000000 8541 100.000000 1 4625 1 chr7D.!!$R2 4624
1 TraesCS7D01G208400 chr7D 165943323 165947871 4548 False 383.500000 1546 87.617429 108 3661 7 chr7D.!!$F1 3553
2 TraesCS7D01G208400 chr7B 130500726 130505014 4288 True 1516.000000 4021 88.147333 105 4312 3 chr7B.!!$R2 4207
3 TraesCS7D01G208400 chr7B 130119249 130125597 6348 False 568.060000 1506 86.564600 259 3655 5 chr7B.!!$F4 3396
4 TraesCS7D01G208400 chr7B 130186582 130187082 500 False 215.000000 215 75.551000 3127 3655 1 chr7B.!!$F1 528
5 TraesCS7D01G208400 chr7A 167732005 167736894 4889 True 716.428571 1469 89.847714 117 4625 7 chr7A.!!$R1 4508
6 TraesCS7D01G208400 chr7A 167679024 167683384 4360 False 493.600000 1520 84.214400 105 3654 5 chr7A.!!$F2 3549
7 TraesCS7D01G208400 chr6A 524867902 524868425 523 True 322.000000 322 78.897000 1001 1491 1 chr6A.!!$R1 490
8 TraesCS7D01G208400 chr6B 462306287 462306843 556 False 204.000000 239 85.525500 2623 3182 2 chr6B.!!$F1 559


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 1083 0.035739 GGGGGCGCGATTAATTAGGA 59.964 55.0 12.10 0.0 0.00 2.94 F
601 1164 0.038526 GTGGGAGTCCGTGTGTGTAG 60.039 60.0 2.26 0.0 35.24 2.74 F
604 1167 0.246635 GGAGTCCGTGTGTGTAGCAT 59.753 55.0 0.00 0.0 0.00 3.79 F
787 2263 0.249073 CTCGCGTGAACTCCCCATAG 60.249 60.0 5.77 0.0 0.00 2.23 F
2713 5666 0.036732 TCACTTTCTGGCTGCGGATT 59.963 50.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1326 2858 1.000612 GGTCGGGAAGGAGAGGTCT 59.999 63.158 0.00 0.0 0.00 3.85 R
2450 4890 1.336887 CGTAGGGATCCAATGGCGTAG 60.337 57.143 15.23 0.0 0.00 3.51 R
2508 4954 2.550606 GCATCGGCGGAAAATATTGGTA 59.449 45.455 7.21 0.0 0.00 3.25 R
2747 5707 2.425539 TCAGCATGCGAAACATCTTCA 58.574 42.857 13.01 0.0 36.64 3.02 R
3964 9907 0.102300 GCCACATATTCGCCCAAACC 59.898 55.000 0.00 0.0 0.00 3.27 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.902540 TTATGGAATCACACATATGTTACTCC 57.097 34.615 5.37 8.62 36.72 3.85
29 30 5.680619 TGGAATCACACATATGTTACTCCC 58.319 41.667 5.37 4.52 36.72 4.30
30 31 5.063880 GGAATCACACATATGTTACTCCCC 58.936 45.833 5.37 0.71 36.72 4.81
31 32 5.397447 GGAATCACACATATGTTACTCCCCA 60.397 44.000 5.37 0.00 36.72 4.96
32 33 4.481368 TCACACATATGTTACTCCCCAC 57.519 45.455 5.37 0.00 36.72 4.61
33 34 4.101114 TCACACATATGTTACTCCCCACT 58.899 43.478 5.37 0.00 36.72 4.00
34 35 5.274015 TCACACATATGTTACTCCCCACTA 58.726 41.667 5.37 0.00 36.72 2.74
35 36 5.903010 TCACACATATGTTACTCCCCACTAT 59.097 40.000 5.37 0.00 36.72 2.12
37 38 7.232737 TCACACATATGTTACTCCCCACTATAG 59.767 40.741 5.37 0.00 36.72 1.31
40 41 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
41 42 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
42 43 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
43 44 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
44 45 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
46 47 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
47 48 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
48 49 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
49 50 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
52 53 6.890814 CCCCACTATAGAGGTAGTAACATAGG 59.109 46.154 14.29 1.86 33.29 2.57
53 54 6.377712 CCCACTATAGAGGTAGTAACATAGGC 59.622 46.154 14.29 0.00 33.29 3.93
55 56 8.327271 CCACTATAGAGGTAGTAACATAGGCTA 58.673 40.741 6.78 0.00 33.29 3.93
65 66 7.822822 GGTAGTAACATAGGCTAATAACATGGG 59.177 40.741 0.00 0.00 0.00 4.00
68 69 5.261040 ACATAGGCTAATAACATGGGCAT 57.739 39.130 0.00 0.00 0.00 4.40
84 85 5.950544 TGGGCATGTTACTAGTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
85 86 7.441836 CATGGGCATGTTACTAGTCTATGTTA 58.558 38.462 0.00 0.00 34.23 2.41
87 88 6.610020 TGGGCATGTTACTAGTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
91 92 9.843334 GCATGTTACTAGTCTATGTTACTATCC 57.157 37.037 0.00 0.00 0.00 2.59
99 100 6.525629 AGTCTATGTTACTATCCATTGTGGC 58.474 40.000 0.00 0.00 37.47 5.01
102 103 7.815068 GTCTATGTTACTATCCATTGTGGCTAG 59.185 40.741 5.55 5.55 40.94 3.42
115 116 2.041755 TGTGGCTAGTCTGAGAGAGGAA 59.958 50.000 0.00 0.00 0.00 3.36
135 136 2.340453 AAGCTGTGCCACAAACGCTG 62.340 55.000 10.40 0.00 31.22 5.18
155 156 3.592059 TGCTCGCGGTAATTAAAGTCTT 58.408 40.909 6.13 0.00 0.00 3.01
159 160 3.125658 TCGCGGTAATTAAAGTCTTTGGC 59.874 43.478 6.13 0.21 0.00 4.52
214 215 2.350102 GGTTTGCAGGCAAAGTACGTAC 60.350 50.000 18.85 18.10 45.16 3.67
219 220 2.353011 GCAGGCAAAGTACGTACTACCA 60.353 50.000 29.42 0.00 34.99 3.25
220 221 3.248266 CAGGCAAAGTACGTACTACCAC 58.752 50.000 29.42 20.80 34.99 4.16
222 223 2.095263 GGCAAAGTACGTACTACCACGA 60.095 50.000 27.59 0.00 44.69 4.35
223 224 3.564511 GCAAAGTACGTACTACCACGAA 58.435 45.455 27.59 0.00 44.69 3.85
228 229 2.798976 ACGTACTACCACGAAGCAAA 57.201 45.000 2.26 0.00 44.69 3.68
229 230 3.308438 ACGTACTACCACGAAGCAAAT 57.692 42.857 2.26 0.00 44.69 2.32
230 231 3.656559 ACGTACTACCACGAAGCAAATT 58.343 40.909 2.26 0.00 44.69 1.82
234 235 6.128742 ACGTACTACCACGAAGCAAATTTAAG 60.129 38.462 2.26 0.00 44.69 1.85
235 236 6.128742 CGTACTACCACGAAGCAAATTTAAGT 60.129 38.462 0.00 0.00 44.69 2.24
236 237 6.628919 ACTACCACGAAGCAAATTTAAGTT 57.371 33.333 0.00 0.00 0.00 2.66
237 238 7.034685 ACTACCACGAAGCAAATTTAAGTTT 57.965 32.000 0.00 0.00 0.00 2.66
240 241 7.688478 ACCACGAAGCAAATTTAAGTTTTAC 57.312 32.000 0.00 0.00 0.00 2.01
241 242 6.415573 ACCACGAAGCAAATTTAAGTTTTACG 59.584 34.615 0.00 0.00 0.00 3.18
242 243 6.278861 CACGAAGCAAATTTAAGTTTTACGC 58.721 36.000 0.00 0.00 0.00 4.42
244 245 6.075257 ACGAAGCAAATTTAAGTTTTACGCAC 60.075 34.615 6.90 1.73 0.00 5.34
247 248 7.707774 AGCAAATTTAAGTTTTACGCACAAT 57.292 28.000 6.90 0.00 0.00 2.71
248 249 8.137210 AGCAAATTTAAGTTTTACGCACAATT 57.863 26.923 6.90 0.00 0.00 2.32
249 250 9.250624 AGCAAATTTAAGTTTTACGCACAATTA 57.749 25.926 6.90 0.00 0.00 1.40
256 257 5.938322 AGTTTTACGCACAATTATGGACAG 58.062 37.500 0.00 0.00 0.00 3.51
258 259 5.539582 TTTACGCACAATTATGGACAGAC 57.460 39.130 0.00 0.00 0.00 3.51
259 260 1.999735 ACGCACAATTATGGACAGACG 59.000 47.619 0.00 0.00 0.00 4.18
261 262 2.670905 CGCACAATTATGGACAGACGAA 59.329 45.455 0.00 0.00 0.00 3.85
429 992 6.122850 TCATCCTTCGCTCATTGTTAATTG 57.877 37.500 0.00 0.00 0.00 2.32
444 1007 9.722056 CATTGTTAATTGAGCTTTACTACATCC 57.278 33.333 0.00 0.00 0.00 3.51
446 1009 8.263940 TGTTAATTGAGCTTTACTACATCCAC 57.736 34.615 0.00 0.00 0.00 4.02
447 1010 7.064134 TGTTAATTGAGCTTTACTACATCCACG 59.936 37.037 0.00 0.00 0.00 4.94
448 1011 3.520290 TGAGCTTTACTACATCCACGG 57.480 47.619 0.00 0.00 0.00 4.94
449 1012 3.093814 TGAGCTTTACTACATCCACGGA 58.906 45.455 0.00 0.00 0.00 4.69
452 1015 5.009710 TGAGCTTTACTACATCCACGGATAG 59.990 44.000 0.00 0.00 32.93 2.08
453 1016 4.894114 AGCTTTACTACATCCACGGATAGT 59.106 41.667 0.00 2.69 32.93 2.12
455 1018 6.548622 AGCTTTACTACATCCACGGATAGTTA 59.451 38.462 6.78 0.00 32.93 2.24
456 1019 6.640092 GCTTTACTACATCCACGGATAGTTAC 59.360 42.308 6.78 0.00 32.93 2.50
457 1020 4.825546 ACTACATCCACGGATAGTTACG 57.174 45.455 0.00 0.00 32.93 3.18
458 1021 3.567164 ACTACATCCACGGATAGTTACGG 59.433 47.826 0.00 0.00 32.93 4.02
459 1022 1.684983 ACATCCACGGATAGTTACGGG 59.315 52.381 0.00 0.00 32.93 5.28
475 1038 4.435970 GGGGGTTTACGGGCCTGG 62.436 72.222 18.00 4.46 0.00 4.45
476 1039 3.654143 GGGGTTTACGGGCCTGGT 61.654 66.667 18.00 10.93 0.00 4.00
480 1043 1.673337 GTTTACGGGCCTGGTCACC 60.673 63.158 18.00 0.00 0.00 4.02
481 1044 2.897762 TTTACGGGCCTGGTCACCC 61.898 63.158 18.00 0.00 43.25 4.61
491 1054 4.351054 GGTCACCCAGCCCACCAG 62.351 72.222 0.00 0.00 0.00 4.00
492 1055 3.570212 GTCACCCAGCCCACCAGT 61.570 66.667 0.00 0.00 0.00 4.00
493 1056 2.776526 TCACCCAGCCCACCAGTT 60.777 61.111 0.00 0.00 0.00 3.16
494 1057 1.462432 TCACCCAGCCCACCAGTTA 60.462 57.895 0.00 0.00 0.00 2.24
495 1058 1.063070 TCACCCAGCCCACCAGTTAA 61.063 55.000 0.00 0.00 0.00 2.01
496 1059 0.178975 CACCCAGCCCACCAGTTAAA 60.179 55.000 0.00 0.00 0.00 1.52
497 1060 0.558712 ACCCAGCCCACCAGTTAAAA 59.441 50.000 0.00 0.00 0.00 1.52
498 1061 1.149077 ACCCAGCCCACCAGTTAAAAT 59.851 47.619 0.00 0.00 0.00 1.82
499 1062 1.824852 CCCAGCCCACCAGTTAAAATC 59.175 52.381 0.00 0.00 0.00 2.17
500 1063 1.472480 CCAGCCCACCAGTTAAAATCG 59.528 52.381 0.00 0.00 0.00 3.34
501 1064 1.472480 CAGCCCACCAGTTAAAATCGG 59.528 52.381 0.00 0.00 0.00 4.18
502 1065 0.815095 GCCCACCAGTTAAAATCGGG 59.185 55.000 0.00 0.00 35.18 5.14
503 1066 1.470051 CCCACCAGTTAAAATCGGGG 58.530 55.000 0.00 0.00 0.00 5.73
504 1067 1.470051 CCACCAGTTAAAATCGGGGG 58.530 55.000 0.00 0.00 0.00 5.40
519 1082 2.551644 GGGGGCGCGATTAATTAGG 58.448 57.895 12.10 0.00 0.00 2.69
520 1083 0.035739 GGGGGCGCGATTAATTAGGA 59.964 55.000 12.10 0.00 0.00 2.94
522 1085 1.001633 GGGGCGCGATTAATTAGGAGA 59.998 52.381 12.10 0.00 0.00 3.71
523 1086 2.549349 GGGGCGCGATTAATTAGGAGAA 60.549 50.000 12.10 0.00 0.00 2.87
524 1087 2.737252 GGGCGCGATTAATTAGGAGAAG 59.263 50.000 12.10 0.00 0.00 2.85
525 1088 2.737252 GGCGCGATTAATTAGGAGAAGG 59.263 50.000 12.10 0.00 0.00 3.46
526 1089 3.554337 GGCGCGATTAATTAGGAGAAGGA 60.554 47.826 12.10 0.00 0.00 3.36
527 1090 3.675698 GCGCGATTAATTAGGAGAAGGAG 59.324 47.826 12.10 0.00 0.00 3.69
529 1092 5.715070 CGCGATTAATTAGGAGAAGGAGAT 58.285 41.667 0.00 0.00 0.00 2.75
530 1093 6.159988 CGCGATTAATTAGGAGAAGGAGATT 58.840 40.000 0.00 0.00 0.00 2.40
531 1094 7.313646 CGCGATTAATTAGGAGAAGGAGATTA 58.686 38.462 0.00 0.00 0.00 1.75
532 1095 7.813148 CGCGATTAATTAGGAGAAGGAGATTAA 59.187 37.037 0.00 0.00 0.00 1.40
533 1096 9.660180 GCGATTAATTAGGAGAAGGAGATTAAT 57.340 33.333 0.00 0.00 34.29 1.40
560 1123 8.103948 AGATGAATTAAAACAGGACAACTCAG 57.896 34.615 0.00 0.00 0.00 3.35
561 1124 6.072112 TGAATTAAAACAGGACAACTCAGC 57.928 37.500 0.00 0.00 0.00 4.26
562 1125 5.592282 TGAATTAAAACAGGACAACTCAGCA 59.408 36.000 0.00 0.00 0.00 4.41
563 1126 5.695851 ATTAAAACAGGACAACTCAGCAG 57.304 39.130 0.00 0.00 0.00 4.24
564 1127 1.972872 AAACAGGACAACTCAGCAGG 58.027 50.000 0.00 0.00 0.00 4.85
565 1128 0.839946 AACAGGACAACTCAGCAGGT 59.160 50.000 0.00 0.00 0.00 4.00
567 1130 4.703703 GGACAACTCAGCAGGTCC 57.296 61.111 0.00 0.00 42.60 4.46
568 1131 1.374758 GGACAACTCAGCAGGTCCG 60.375 63.158 0.00 0.00 40.29 4.79
569 1132 1.367840 GACAACTCAGCAGGTCCGT 59.632 57.895 0.00 0.00 0.00 4.69
573 1136 2.069273 CAACTCAGCAGGTCCGTAAAG 58.931 52.381 0.00 0.00 0.00 1.85
574 1137 1.339097 ACTCAGCAGGTCCGTAAAGT 58.661 50.000 0.00 0.00 0.00 2.66
578 1141 1.000955 CAGCAGGTCCGTAAAGTCTGT 59.999 52.381 0.00 0.00 0.00 3.41
579 1142 1.000955 AGCAGGTCCGTAAAGTCTGTG 59.999 52.381 0.00 0.00 0.00 3.66
580 1143 1.000506 GCAGGTCCGTAAAGTCTGTGA 59.999 52.381 0.00 0.00 0.00 3.58
581 1144 2.927014 GCAGGTCCGTAAAGTCTGTGAG 60.927 54.545 0.00 0.00 0.00 3.51
582 1145 1.893801 AGGTCCGTAAAGTCTGTGAGG 59.106 52.381 0.00 0.00 0.00 3.86
583 1146 1.617357 GGTCCGTAAAGTCTGTGAGGT 59.383 52.381 0.00 0.00 0.00 3.85
584 1147 2.609737 GGTCCGTAAAGTCTGTGAGGTG 60.610 54.545 0.00 0.00 0.00 4.00
585 1148 1.616865 TCCGTAAAGTCTGTGAGGTGG 59.383 52.381 0.00 0.00 0.00 4.61
587 1150 1.616865 CGTAAAGTCTGTGAGGTGGGA 59.383 52.381 0.00 0.00 0.00 4.37
588 1151 2.352814 CGTAAAGTCTGTGAGGTGGGAG 60.353 54.545 0.00 0.00 0.00 4.30
589 1152 1.807814 AAAGTCTGTGAGGTGGGAGT 58.192 50.000 0.00 0.00 0.00 3.85
590 1153 1.343069 AAGTCTGTGAGGTGGGAGTC 58.657 55.000 0.00 0.00 0.00 3.36
591 1154 0.543174 AGTCTGTGAGGTGGGAGTCC 60.543 60.000 0.00 0.00 0.00 3.85
592 1155 1.606601 TCTGTGAGGTGGGAGTCCG 60.607 63.158 2.26 0.00 35.24 4.79
594 1157 2.159819 CTGTGAGGTGGGAGTCCGTG 62.160 65.000 2.26 0.00 35.24 4.94
595 1158 2.200370 TGAGGTGGGAGTCCGTGT 59.800 61.111 2.26 0.00 35.24 4.49
596 1159 2.207229 TGAGGTGGGAGTCCGTGTG 61.207 63.158 2.26 0.00 35.24 3.82
598 1161 2.030562 GGTGGGAGTCCGTGTGTG 59.969 66.667 2.26 0.00 35.24 3.82
599 1162 2.803817 GGTGGGAGTCCGTGTGTGT 61.804 63.158 2.26 0.00 35.24 3.72
600 1163 1.466025 GGTGGGAGTCCGTGTGTGTA 61.466 60.000 2.26 0.00 35.24 2.90
601 1164 0.038526 GTGGGAGTCCGTGTGTGTAG 60.039 60.000 2.26 0.00 35.24 2.74
603 1166 1.663739 GGAGTCCGTGTGTGTAGCA 59.336 57.895 0.00 0.00 0.00 3.49
604 1167 0.246635 GGAGTCCGTGTGTGTAGCAT 59.753 55.000 0.00 0.00 0.00 3.79
605 1168 1.337823 GGAGTCCGTGTGTGTAGCATT 60.338 52.381 0.00 0.00 0.00 3.56
606 1169 2.413837 GAGTCCGTGTGTGTAGCATTT 58.586 47.619 0.00 0.00 0.00 2.32
608 1171 3.211045 AGTCCGTGTGTGTAGCATTTTT 58.789 40.909 0.00 0.00 0.00 1.94
609 1172 3.003275 AGTCCGTGTGTGTAGCATTTTTG 59.997 43.478 0.00 0.00 0.00 2.44
610 1173 2.946329 TCCGTGTGTGTAGCATTTTTGT 59.054 40.909 0.00 0.00 0.00 2.83
611 1174 3.378742 TCCGTGTGTGTAGCATTTTTGTT 59.621 39.130 0.00 0.00 0.00 2.83
757 2223 0.468226 TTCCAGTCCACGTCAAGCTT 59.532 50.000 0.00 0.00 0.00 3.74
763 2229 2.102588 AGTCCACGTCAAGCTTAACAGT 59.897 45.455 0.00 0.00 0.00 3.55
781 2257 1.736681 AGTACTACTCGCGTGAACTCC 59.263 52.381 16.04 0.00 0.00 3.85
785 2261 0.968901 TACTCGCGTGAACTCCCCAT 60.969 55.000 16.04 0.00 0.00 4.00
786 2262 0.968901 ACTCGCGTGAACTCCCCATA 60.969 55.000 16.04 0.00 0.00 2.74
787 2263 0.249073 CTCGCGTGAACTCCCCATAG 60.249 60.000 5.77 0.00 0.00 2.23
788 2264 1.883084 CGCGTGAACTCCCCATAGC 60.883 63.158 0.00 0.00 0.00 2.97
1703 3313 1.752358 ATGATGCAGACGCCGGAGAT 61.752 55.000 13.83 0.00 37.32 2.75
1804 3414 4.019321 AGGAGGTAATGCACTGCTTCTTTA 60.019 41.667 1.98 0.00 30.79 1.85
1808 3418 7.049799 AGGTAATGCACTGCTTCTTTAAAAA 57.950 32.000 1.98 0.00 0.00 1.94
1853 3727 5.835113 TGCTATTAAGGCCTGAATCAAAC 57.165 39.130 19.44 7.83 0.00 2.93
1875 3797 9.588774 CAAACAACTTGATTGCAATCTAAAATG 57.411 29.630 33.23 26.03 42.62 2.32
1881 3803 8.525316 ACTTGATTGCAATCTAAAATGATCACA 58.475 29.630 33.23 11.83 36.39 3.58
1900 3822 9.967451 TGATCACAGTATAAATTGGTCCTTTTA 57.033 29.630 0.00 0.00 0.00 1.52
1940 3867 9.814899 TCATCTGCATTTAAAAAGAAAGTTTCA 57.185 25.926 17.65 0.00 0.00 2.69
1962 3889 5.131809 TCATGGGAAGGGAAACAATGTTTTT 59.868 36.000 13.00 3.46 0.00 1.94
2010 4139 3.482436 TCTTTCAAGCAACGGTGGTATT 58.518 40.909 5.16 0.00 34.25 1.89
2157 4438 7.446931 TCAATACTCTGTTGAACATGCCTTTAA 59.553 33.333 0.00 0.00 32.98 1.52
2179 4461 4.603989 ATGCTGTATGGATCTCTCTGTG 57.396 45.455 0.00 0.00 0.00 3.66
2186 4468 7.370905 TGTATGGATCTCTCTGTGATTTCAT 57.629 36.000 0.00 0.00 0.00 2.57
2195 4477 8.803397 TCTCTCTGTGATTTCATTCATGAATT 57.197 30.769 18.41 4.06 45.30 2.17
2196 4478 8.890718 TCTCTCTGTGATTTCATTCATGAATTC 58.109 33.333 18.41 13.52 45.30 2.17
2219 4524 4.506255 GGGTTCCCGCCCTCATGG 62.506 72.222 0.00 0.00 45.22 3.66
2233 4538 5.357032 CGCCCTCATGGTAGTCTAAAATTTT 59.643 40.000 8.75 8.75 36.04 1.82
2373 4704 4.875544 TTTTCTCTGTTTCACTCGGTTG 57.124 40.909 0.00 0.00 0.00 3.77
2415 4768 6.547510 ACAAGCCATGGGTTTATCTCTTTATC 59.452 38.462 26.36 0.00 33.16 1.75
2418 4771 5.940470 GCCATGGGTTTATCTCTTTATCGAT 59.060 40.000 15.13 2.16 0.00 3.59
2508 4954 7.268586 CACCATCTAGAGCTGTTAATAGTGTT 58.731 38.462 0.00 0.00 0.00 3.32
2533 4979 1.295792 TATTTTCCGCCGATGCAGAC 58.704 50.000 0.00 0.00 37.32 3.51
2553 5015 4.075763 ACGTGTCTTAAGTACAGTAGCG 57.924 45.455 1.63 7.91 0.00 4.26
2647 5600 5.239359 TGAGTGATGATGCAAAATACAGC 57.761 39.130 0.00 0.00 0.00 4.40
2684 5637 6.322931 TCCTACTTGAATATCTGGAGGCATA 58.677 40.000 0.00 0.00 0.00 3.14
2689 5642 6.328672 ACTTGAATATCTGGAGGCATAAGACT 59.671 38.462 0.00 0.00 33.94 3.24
2713 5666 0.036732 TCACTTTCTGGCTGCGGATT 59.963 50.000 0.00 0.00 0.00 3.01
2746 5706 6.295011 GCAGTAGCAGTCATAGATCTACCATT 60.295 42.308 4.10 0.00 41.58 3.16
2747 5707 7.665690 CAGTAGCAGTCATAGATCTACCATTT 58.334 38.462 4.10 0.00 32.31 2.32
2751 5711 7.215789 AGCAGTCATAGATCTACCATTTGAAG 58.784 38.462 4.10 2.78 0.00 3.02
2924 8397 6.601613 TGCGTACCAAGGATGATCTTAAATTT 59.398 34.615 0.00 0.00 0.00 1.82
3182 8683 3.065925 GCAATCCAGACCATCAAACTAGC 59.934 47.826 0.00 0.00 0.00 3.42
3258 8829 6.911511 CGAAGTTTTCTCTAGGGTAACTATCG 59.088 42.308 18.01 18.01 0.00 2.92
3275 9194 6.992063 ACTATCGCATTGAAGATTTGAAGT 57.008 33.333 1.38 0.00 0.00 3.01
3277 9196 8.492673 ACTATCGCATTGAAGATTTGAAGTTA 57.507 30.769 1.38 0.00 0.00 2.24
3347 9267 4.842139 TTTTTCTCGCTCGAAGATAAGC 57.158 40.909 0.00 0.00 33.89 3.09
3348 9268 3.503827 TTTCTCGCTCGAAGATAAGCA 57.496 42.857 0.00 0.00 38.45 3.91
3380 9300 6.239217 TCAGCAGAGCTTTTCATTAGGATA 57.761 37.500 0.00 0.00 36.40 2.59
3382 9302 6.709397 TCAGCAGAGCTTTTCATTAGGATATG 59.291 38.462 0.00 0.00 36.40 1.78
3399 9321 9.553064 TTAGGATATGCTTTGATTTTCTCTCTC 57.447 33.333 0.65 0.00 0.00 3.20
3400 9322 7.571919 AGGATATGCTTTGATTTTCTCTCTCA 58.428 34.615 0.00 0.00 0.00 3.27
3401 9323 7.498570 AGGATATGCTTTGATTTTCTCTCTCAC 59.501 37.037 0.00 0.00 0.00 3.51
3472 9398 2.961062 ACTTGCTGTTCAAATCTTGGCT 59.039 40.909 0.00 0.00 33.65 4.75
3473 9399 3.005155 ACTTGCTGTTCAAATCTTGGCTC 59.995 43.478 0.00 0.00 33.65 4.70
3709 9650 1.209019 TGGCCTCTTCAGATTCAGAGC 59.791 52.381 3.32 0.00 36.03 4.09
3717 9658 1.203287 TCAGATTCAGAGCGTGGACAG 59.797 52.381 0.00 0.00 0.00 3.51
3748 9689 3.321111 TGGAACGATAGGGCTAGTGATTC 59.679 47.826 0.00 0.00 43.77 2.52
3749 9690 3.321111 GGAACGATAGGGCTAGTGATTCA 59.679 47.826 0.00 0.00 43.77 2.57
3750 9691 4.021016 GGAACGATAGGGCTAGTGATTCAT 60.021 45.833 0.00 0.00 43.77 2.57
3751 9692 4.527509 ACGATAGGGCTAGTGATTCATG 57.472 45.455 0.00 0.00 43.77 3.07
3753 9694 3.511540 CGATAGGGCTAGTGATTCATGGA 59.488 47.826 0.00 0.00 0.00 3.41
3754 9695 4.619394 CGATAGGGCTAGTGATTCATGGAC 60.619 50.000 0.00 0.00 0.00 4.02
3755 9696 2.481441 AGGGCTAGTGATTCATGGACA 58.519 47.619 0.00 0.00 0.00 4.02
3796 9739 0.250640 CCAGAGGCTGCAAGAAGTGT 60.251 55.000 0.50 0.00 34.07 3.55
3797 9740 1.602311 CAGAGGCTGCAAGAAGTGTT 58.398 50.000 0.50 0.00 34.07 3.32
3798 9741 1.952296 CAGAGGCTGCAAGAAGTGTTT 59.048 47.619 0.50 0.00 34.07 2.83
3799 9742 3.141398 CAGAGGCTGCAAGAAGTGTTTA 58.859 45.455 0.50 0.00 34.07 2.01
3843 9786 0.338814 ATCAAGAGTACCCCGTCCCT 59.661 55.000 0.00 0.00 0.00 4.20
3850 9793 0.830866 GTACCCCGTCCCTATGGAGG 60.831 65.000 0.14 0.14 42.85 4.30
3911 9854 1.202065 CGTTCACCATTCATTCAGCGG 60.202 52.381 0.00 0.00 0.00 5.52
3913 9856 2.684881 GTTCACCATTCATTCAGCGGAT 59.315 45.455 0.00 0.00 0.00 4.18
3928 9871 1.734465 GCGGATAATATGCTGGTGAGC 59.266 52.381 0.00 0.00 46.44 4.26
3955 9898 2.588620 ACCAAGCTCGGATACTAGGAG 58.411 52.381 0.00 0.00 0.00 3.69
3957 9900 2.588620 CAAGCTCGGATACTAGGAGGT 58.411 52.381 0.00 0.00 39.97 3.85
3961 9904 3.651904 AGCTCGGATACTAGGAGGTAAGA 59.348 47.826 0.00 0.00 36.82 2.10
3964 9907 5.484715 CTCGGATACTAGGAGGTAAGAGAG 58.515 50.000 0.00 0.00 30.75 3.20
3966 9909 4.041938 CGGATACTAGGAGGTAAGAGAGGT 59.958 50.000 0.00 0.00 0.00 3.85
4117 10061 2.923655 CGTGCCAGTCTATTGTACAGTG 59.076 50.000 0.34 0.00 0.00 3.66
4387 10338 8.223769 GTCGTTCATGTTTAATGCTATCATAGG 58.776 37.037 0.00 0.00 31.46 2.57
4395 10346 8.097038 TGTTTAATGCTATCATAGGAAGCCTAG 58.903 37.037 8.41 0.00 39.70 3.02
4417 10368 4.889409 AGATCTGAGAGAGATTGACCTCAC 59.111 45.833 0.00 0.00 41.91 3.51
4442 10393 2.539302 AGGCAATACACTTGGGCAAAT 58.461 42.857 0.00 0.00 0.00 2.32
4451 10402 5.705609 ACACTTGGGCAAATAAGTTACAG 57.294 39.130 0.00 0.00 35.08 2.74
4472 10423 7.621428 ACAGAATCCAACATATGAGAAGTTG 57.379 36.000 10.38 2.88 41.61 3.16
4494 10445 6.769134 TGGATAGAGTTTTGACGAGTATCA 57.231 37.500 0.00 0.00 33.17 2.15
4508 10459 6.432783 TGACGAGTATCAAATGGGAACAAAAT 59.567 34.615 0.00 0.00 38.81 1.82
4518 10469 4.953940 TGGGAACAAAATTTTCCTCTGG 57.046 40.909 0.00 0.00 42.10 3.86
4520 10471 5.459505 TGGGAACAAAATTTTCCTCTGGTA 58.540 37.500 0.00 0.00 42.10 3.25
4522 10473 6.556874 TGGGAACAAAATTTTCCTCTGGTAAT 59.443 34.615 0.00 0.00 42.10 1.89
4523 10474 6.873605 GGGAACAAAATTTTCCTCTGGTAATG 59.126 38.462 0.00 0.00 42.10 1.90
4527 10478 6.326323 ACAAAATTTTCCTCTGGTAATGGTGT 59.674 34.615 0.00 0.00 0.00 4.16
4531 10482 1.003118 TCCTCTGGTAATGGTGTGTGC 59.997 52.381 0.00 0.00 0.00 4.57
4554 10505 5.810587 GCGTTACAAAGAGGAATATCTGACA 59.189 40.000 0.00 0.00 0.00 3.58
4580 10531 1.702957 ACCCCTTCTTGTTGATTCCGA 59.297 47.619 0.00 0.00 0.00 4.55
4586 10537 4.637534 CCTTCTTGTTGATTCCGATGATGT 59.362 41.667 0.00 0.00 0.00 3.06
4589 10540 3.348647 TGTTGATTCCGATGATGTGGT 57.651 42.857 0.00 0.00 0.00 4.16
4608 10559 7.675897 ATGTGGTGCATCATGGAAACAAAAAC 61.676 38.462 1.27 0.00 37.21 2.43
4620 10571 7.090953 TGGAAACAAAAACATCTACTCGTTT 57.909 32.000 0.00 0.00 37.44 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.527582 GTGGGGAGTAACATATGTGTGATTC 59.472 44.000 9.63 4.61 38.92 2.52
9 10 5.191722 AGTGGGGAGTAACATATGTGTGATT 59.808 40.000 9.63 0.00 38.92 2.57
10 11 4.721776 AGTGGGGAGTAACATATGTGTGAT 59.278 41.667 9.63 0.00 38.92 3.06
12 13 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
13 14 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
15 16 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
16 17 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
19 20 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
21 22 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
22 23 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
23 24 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
24 25 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
28 29 6.377712 GCCTATGTTACTACCTCTATAGTGGG 59.622 46.154 21.82 16.23 36.09 4.61
29 30 7.176490 AGCCTATGTTACTACCTCTATAGTGG 58.824 42.308 17.49 17.49 36.09 4.00
30 31 9.736414 TTAGCCTATGTTACTACCTCTATAGTG 57.264 37.037 0.00 0.00 36.09 2.74
37 38 9.640963 CATGTTATTAGCCTATGTTACTACCTC 57.359 37.037 0.00 0.00 0.00 3.85
40 41 7.333672 GCCCATGTTATTAGCCTATGTTACTAC 59.666 40.741 0.00 0.00 0.00 2.73
41 42 7.016760 TGCCCATGTTATTAGCCTATGTTACTA 59.983 37.037 0.00 0.00 0.00 1.82
42 43 6.183361 TGCCCATGTTATTAGCCTATGTTACT 60.183 38.462 0.00 0.00 0.00 2.24
43 44 6.001460 TGCCCATGTTATTAGCCTATGTTAC 58.999 40.000 0.00 0.00 0.00 2.50
44 45 6.194285 TGCCCATGTTATTAGCCTATGTTA 57.806 37.500 0.00 0.00 0.00 2.41
46 47 4.722526 TGCCCATGTTATTAGCCTATGT 57.277 40.909 0.00 0.00 0.00 2.29
47 48 5.571784 CATGCCCATGTTATTAGCCTATG 57.428 43.478 0.13 0.00 34.23 2.23
60 61 5.858381 ACATAGACTAGTAACATGCCCATG 58.142 41.667 6.71 6.71 44.15 3.66
65 66 9.843334 GGATAGTAACATAGACTAGTAACATGC 57.157 37.037 0.00 0.00 33.03 4.06
72 73 8.861086 CCACAATGGATAGTAACATAGACTAGT 58.139 37.037 0.00 0.00 40.96 2.57
73 74 7.815068 GCCACAATGGATAGTAACATAGACTAG 59.185 40.741 0.00 0.00 40.96 2.57
74 75 7.509318 AGCCACAATGGATAGTAACATAGACTA 59.491 37.037 0.00 0.00 40.96 2.59
87 88 4.546674 TCTCAGACTAGCCACAATGGATA 58.453 43.478 0.00 0.00 40.96 2.59
91 92 3.181477 CCTCTCTCAGACTAGCCACAATG 60.181 52.174 0.00 0.00 0.00 2.82
92 93 3.030291 CCTCTCTCAGACTAGCCACAAT 58.970 50.000 0.00 0.00 0.00 2.71
93 94 2.041755 TCCTCTCTCAGACTAGCCACAA 59.958 50.000 0.00 0.00 0.00 3.33
95 96 2.428544 TCCTCTCTCAGACTAGCCAC 57.571 55.000 0.00 0.00 0.00 5.01
97 98 3.430236 GCTTTTCCTCTCTCAGACTAGCC 60.430 52.174 0.00 0.00 0.00 3.93
99 100 4.462483 ACAGCTTTTCCTCTCTCAGACTAG 59.538 45.833 0.00 0.00 0.00 2.57
102 103 3.324993 CACAGCTTTTCCTCTCTCAGAC 58.675 50.000 0.00 0.00 0.00 3.51
115 116 1.226945 GCGTTTGTGGCACAGCTTT 60.227 52.632 20.97 0.00 41.80 3.51
135 136 4.331962 CAAAGACTTTAATTACCGCGAGC 58.668 43.478 8.23 0.00 0.00 5.03
155 156 1.713647 TGGTGGGAGGAAATTAGCCAA 59.286 47.619 0.68 0.00 0.00 4.52
159 160 6.194967 ACCTAATTTGGTGGGAGGAAATTAG 58.805 40.000 10.97 0.00 43.30 1.73
214 215 7.924103 AAAACTTAAATTTGCTTCGTGGTAG 57.076 32.000 0.00 0.00 0.00 3.18
219 220 5.972382 TGCGTAAAACTTAAATTTGCTTCGT 59.028 32.000 0.00 0.00 0.00 3.85
220 221 6.075310 TGTGCGTAAAACTTAAATTTGCTTCG 60.075 34.615 0.00 0.00 0.00 3.79
221 222 7.155858 TGTGCGTAAAACTTAAATTTGCTTC 57.844 32.000 0.00 0.00 0.00 3.86
222 223 7.527084 TTGTGCGTAAAACTTAAATTTGCTT 57.473 28.000 0.00 0.00 0.00 3.91
223 224 7.707774 ATTGTGCGTAAAACTTAAATTTGCT 57.292 28.000 0.00 0.00 0.00 3.91
228 229 9.349145 GTCCATAATTGTGCGTAAAACTTAAAT 57.651 29.630 0.00 0.00 0.00 1.40
229 230 8.350722 TGTCCATAATTGTGCGTAAAACTTAAA 58.649 29.630 0.00 0.00 0.00 1.52
230 231 7.872881 TGTCCATAATTGTGCGTAAAACTTAA 58.127 30.769 0.00 0.00 0.00 1.85
234 235 5.793457 GTCTGTCCATAATTGTGCGTAAAAC 59.207 40.000 0.00 0.00 0.00 2.43
235 236 5.390040 CGTCTGTCCATAATTGTGCGTAAAA 60.390 40.000 0.00 0.00 0.00 1.52
236 237 4.092237 CGTCTGTCCATAATTGTGCGTAAA 59.908 41.667 0.00 0.00 0.00 2.01
237 238 3.615056 CGTCTGTCCATAATTGTGCGTAA 59.385 43.478 0.00 0.00 0.00 3.18
240 241 2.267426 TCGTCTGTCCATAATTGTGCG 58.733 47.619 0.00 0.00 0.00 5.34
241 242 3.684788 ACTTCGTCTGTCCATAATTGTGC 59.315 43.478 0.00 0.00 0.00 4.57
242 243 6.961359 TTACTTCGTCTGTCCATAATTGTG 57.039 37.500 0.00 0.00 0.00 3.33
244 245 6.594159 AGGTTTACTTCGTCTGTCCATAATTG 59.406 38.462 0.00 0.00 0.00 2.32
247 248 5.733620 AGGTTTACTTCGTCTGTCCATAA 57.266 39.130 0.00 0.00 0.00 1.90
248 249 5.126061 GGTAGGTTTACTTCGTCTGTCCATA 59.874 44.000 0.00 0.00 0.00 2.74
249 250 4.081807 GGTAGGTTTACTTCGTCTGTCCAT 60.082 45.833 0.00 0.00 0.00 3.41
250 251 3.256631 GGTAGGTTTACTTCGTCTGTCCA 59.743 47.826 0.00 0.00 0.00 4.02
251 252 3.367806 GGGTAGGTTTACTTCGTCTGTCC 60.368 52.174 0.00 0.00 0.00 4.02
252 253 3.509184 AGGGTAGGTTTACTTCGTCTGTC 59.491 47.826 0.00 0.00 0.00 3.51
256 257 3.434641 GCAAAGGGTAGGTTTACTTCGTC 59.565 47.826 0.00 0.00 0.00 4.20
258 259 3.404899 TGCAAAGGGTAGGTTTACTTCG 58.595 45.455 0.00 0.00 0.00 3.79
259 260 3.190744 GCTGCAAAGGGTAGGTTTACTTC 59.809 47.826 0.00 0.00 0.00 3.01
261 262 2.554564 GGCTGCAAAGGGTAGGTTTACT 60.555 50.000 0.50 0.00 0.00 2.24
429 992 3.795623 TCCGTGGATGTAGTAAAGCTC 57.204 47.619 0.00 0.00 0.00 4.09
432 995 6.854892 CGTAACTATCCGTGGATGTAGTAAAG 59.145 42.308 11.68 1.74 36.17 1.85
433 996 6.238731 CCGTAACTATCCGTGGATGTAGTAAA 60.239 42.308 11.68 0.00 36.17 2.01
434 997 5.239306 CCGTAACTATCCGTGGATGTAGTAA 59.761 44.000 11.68 0.00 36.17 2.24
436 999 3.567164 CCGTAACTATCCGTGGATGTAGT 59.433 47.826 11.68 5.17 36.17 2.73
438 1001 2.886523 CCCGTAACTATCCGTGGATGTA 59.113 50.000 11.68 0.00 36.17 2.29
439 1002 1.684983 CCCGTAACTATCCGTGGATGT 59.315 52.381 11.68 5.12 36.17 3.06
440 1003 1.000506 CCCCGTAACTATCCGTGGATG 59.999 57.143 11.68 4.53 36.17 3.51
441 1004 1.335145 CCCCGTAACTATCCGTGGAT 58.665 55.000 6.63 6.63 38.54 3.41
442 1005 0.756442 CCCCCGTAACTATCCGTGGA 60.756 60.000 0.00 0.00 0.00 4.02
458 1021 4.435970 CCAGGCCCGTAAACCCCC 62.436 72.222 0.00 0.00 0.00 5.40
459 1022 3.633609 GACCAGGCCCGTAAACCCC 62.634 68.421 0.00 0.00 0.00 4.95
460 1023 2.045634 GACCAGGCCCGTAAACCC 60.046 66.667 0.00 0.00 0.00 4.11
461 1024 1.673337 GTGACCAGGCCCGTAAACC 60.673 63.158 0.00 0.00 0.00 3.27
462 1025 1.673337 GGTGACCAGGCCCGTAAAC 60.673 63.158 0.00 0.00 0.00 2.01
463 1026 2.751688 GGTGACCAGGCCCGTAAA 59.248 61.111 0.00 0.00 0.00 2.01
475 1038 1.774894 TAACTGGTGGGCTGGGTGAC 61.775 60.000 0.00 0.00 0.00 3.67
476 1039 1.063070 TTAACTGGTGGGCTGGGTGA 61.063 55.000 0.00 0.00 0.00 4.02
480 1043 1.472480 CGATTTTAACTGGTGGGCTGG 59.528 52.381 0.00 0.00 0.00 4.85
481 1044 1.472480 CCGATTTTAACTGGTGGGCTG 59.528 52.381 0.00 0.00 0.00 4.85
482 1045 1.615919 CCCGATTTTAACTGGTGGGCT 60.616 52.381 0.00 0.00 0.00 5.19
483 1046 0.815095 CCCGATTTTAACTGGTGGGC 59.185 55.000 0.00 0.00 0.00 5.36
484 1047 1.470051 CCCCGATTTTAACTGGTGGG 58.530 55.000 0.00 0.00 34.87 4.61
501 1064 0.035739 TCCTAATTAATCGCGCCCCC 59.964 55.000 0.00 0.00 0.00 5.40
502 1065 1.001633 TCTCCTAATTAATCGCGCCCC 59.998 52.381 0.00 0.00 0.00 5.80
503 1066 2.450609 TCTCCTAATTAATCGCGCCC 57.549 50.000 0.00 0.00 0.00 6.13
504 1067 2.737252 CCTTCTCCTAATTAATCGCGCC 59.263 50.000 0.00 0.00 0.00 6.53
505 1068 3.650139 TCCTTCTCCTAATTAATCGCGC 58.350 45.455 0.00 0.00 0.00 6.86
506 1069 5.122512 TCTCCTTCTCCTAATTAATCGCG 57.877 43.478 0.00 0.00 0.00 5.87
507 1070 9.660180 ATTAATCTCCTTCTCCTAATTAATCGC 57.340 33.333 0.00 0.00 28.25 4.58
533 1096 9.567776 TGAGTTGTCCTGTTTTAATTCATCTAA 57.432 29.630 0.00 0.00 0.00 2.10
535 1098 7.308830 GCTGAGTTGTCCTGTTTTAATTCATCT 60.309 37.037 0.00 0.00 0.00 2.90
536 1099 6.803807 GCTGAGTTGTCCTGTTTTAATTCATC 59.196 38.462 0.00 0.00 0.00 2.92
537 1100 6.265196 TGCTGAGTTGTCCTGTTTTAATTCAT 59.735 34.615 0.00 0.00 0.00 2.57
539 1102 6.072112 TGCTGAGTTGTCCTGTTTTAATTC 57.928 37.500 0.00 0.00 0.00 2.17
540 1103 5.010012 CCTGCTGAGTTGTCCTGTTTTAATT 59.990 40.000 0.00 0.00 0.00 1.40
541 1104 4.520492 CCTGCTGAGTTGTCCTGTTTTAAT 59.480 41.667 0.00 0.00 0.00 1.40
542 1105 3.882888 CCTGCTGAGTTGTCCTGTTTTAA 59.117 43.478 0.00 0.00 0.00 1.52
543 1106 3.118038 ACCTGCTGAGTTGTCCTGTTTTA 60.118 43.478 0.00 0.00 0.00 1.52
544 1107 2.301346 CCTGCTGAGTTGTCCTGTTTT 58.699 47.619 0.00 0.00 0.00 2.43
546 1109 0.839946 ACCTGCTGAGTTGTCCTGTT 59.160 50.000 0.00 0.00 0.00 3.16
547 1110 0.394565 GACCTGCTGAGTTGTCCTGT 59.605 55.000 0.00 0.00 0.00 4.00
549 1112 1.821061 CGGACCTGCTGAGTTGTCCT 61.821 60.000 12.82 0.00 44.08 3.85
550 1113 1.374758 CGGACCTGCTGAGTTGTCC 60.375 63.158 6.99 6.99 43.07 4.02
551 1114 0.601558 TACGGACCTGCTGAGTTGTC 59.398 55.000 0.00 0.00 0.00 3.18
552 1115 1.045407 TTACGGACCTGCTGAGTTGT 58.955 50.000 0.00 0.00 0.00 3.32
553 1116 2.069273 CTTTACGGACCTGCTGAGTTG 58.931 52.381 0.00 0.00 0.00 3.16
554 1117 1.692519 ACTTTACGGACCTGCTGAGTT 59.307 47.619 0.00 0.00 0.00 3.01
555 1118 1.272769 GACTTTACGGACCTGCTGAGT 59.727 52.381 0.00 0.00 0.00 3.41
556 1119 1.546476 AGACTTTACGGACCTGCTGAG 59.454 52.381 0.00 0.00 0.00 3.35
560 1123 1.000506 TCACAGACTTTACGGACCTGC 59.999 52.381 0.00 0.00 0.00 4.85
561 1124 2.352814 CCTCACAGACTTTACGGACCTG 60.353 54.545 0.00 0.00 0.00 4.00
562 1125 1.893801 CCTCACAGACTTTACGGACCT 59.106 52.381 0.00 0.00 0.00 3.85
563 1126 1.617357 ACCTCACAGACTTTACGGACC 59.383 52.381 0.00 0.00 0.00 4.46
564 1127 2.609737 CCACCTCACAGACTTTACGGAC 60.610 54.545 0.00 0.00 0.00 4.79
565 1128 1.616865 CCACCTCACAGACTTTACGGA 59.383 52.381 0.00 0.00 0.00 4.69
567 1130 1.616865 TCCCACCTCACAGACTTTACG 59.383 52.381 0.00 0.00 0.00 3.18
568 1131 2.633481 ACTCCCACCTCACAGACTTTAC 59.367 50.000 0.00 0.00 0.00 2.01
569 1132 2.897969 GACTCCCACCTCACAGACTTTA 59.102 50.000 0.00 0.00 0.00 1.85
573 1136 1.878656 CGGACTCCCACCTCACAGAC 61.879 65.000 0.00 0.00 0.00 3.51
574 1137 1.606601 CGGACTCCCACCTCACAGA 60.607 63.158 0.00 0.00 0.00 3.41
578 1141 2.200370 ACACGGACTCCCACCTCA 59.800 61.111 0.00 0.00 0.00 3.86
579 1142 2.207924 ACACACGGACTCCCACCTC 61.208 63.158 0.00 0.00 0.00 3.85
580 1143 2.122989 ACACACGGACTCCCACCT 60.123 61.111 0.00 0.00 0.00 4.00
581 1144 1.466025 TACACACACGGACTCCCACC 61.466 60.000 0.00 0.00 0.00 4.61
582 1145 0.038526 CTACACACACGGACTCCCAC 60.039 60.000 0.00 0.00 0.00 4.61
583 1146 1.812686 GCTACACACACGGACTCCCA 61.813 60.000 0.00 0.00 0.00 4.37
584 1147 1.080025 GCTACACACACGGACTCCC 60.080 63.158 0.00 0.00 0.00 4.30
585 1148 0.246635 ATGCTACACACACGGACTCC 59.753 55.000 0.00 0.00 0.00 3.85
587 1150 2.543777 AAATGCTACACACACGGACT 57.456 45.000 0.00 0.00 0.00 3.85
588 1151 3.242936 ACAAAAATGCTACACACACGGAC 60.243 43.478 0.00 0.00 0.00 4.79
589 1152 2.946329 ACAAAAATGCTACACACACGGA 59.054 40.909 0.00 0.00 0.00 4.69
590 1153 3.347958 ACAAAAATGCTACACACACGG 57.652 42.857 0.00 0.00 0.00 4.94
591 1154 4.101942 ACAACAAAAATGCTACACACACG 58.898 39.130 0.00 0.00 0.00 4.49
592 1155 7.513190 TTAACAACAAAAATGCTACACACAC 57.487 32.000 0.00 0.00 0.00 3.82
600 1163 8.711457 GCATGTCTAATTAACAACAAAAATGCT 58.289 29.630 0.00 0.00 0.00 3.79
601 1164 8.494347 TGCATGTCTAATTAACAACAAAAATGC 58.506 29.630 0.00 0.00 0.00 3.56
604 1167 8.494347 GCATGCATGTCTAATTAACAACAAAAA 58.506 29.630 26.79 0.00 0.00 1.94
605 1168 7.654923 TGCATGCATGTCTAATTAACAACAAAA 59.345 29.630 26.79 0.00 0.00 2.44
606 1169 7.116090 GTGCATGCATGTCTAATTAACAACAAA 59.884 33.333 25.64 0.00 0.00 2.83
608 1171 6.072008 AGTGCATGCATGTCTAATTAACAACA 60.072 34.615 25.64 9.33 0.00 3.33
609 1172 6.324819 AGTGCATGCATGTCTAATTAACAAC 58.675 36.000 25.64 4.61 0.00 3.32
610 1173 6.513806 AGTGCATGCATGTCTAATTAACAA 57.486 33.333 25.64 0.00 0.00 2.83
611 1174 7.047271 TCTAGTGCATGCATGTCTAATTAACA 58.953 34.615 25.64 10.74 0.00 2.41
781 2257 2.514458 AGTCAAAGGTTGGCTATGGG 57.486 50.000 0.00 0.00 45.27 4.00
787 2263 0.673985 GTTGGGAGTCAAAGGTTGGC 59.326 55.000 0.00 0.00 37.08 4.52
788 2264 2.158608 AGAGTTGGGAGTCAAAGGTTGG 60.159 50.000 0.00 0.00 37.08 3.77
954 2473 0.669318 CCACGCTACGCTTTCTTCCA 60.669 55.000 0.00 0.00 0.00 3.53
1284 2816 2.826738 AGCGACTCGAGCCTCTCC 60.827 66.667 13.61 0.00 34.64 3.71
1326 2858 1.000612 GGTCGGGAAGGAGAGGTCT 59.999 63.158 0.00 0.00 0.00 3.85
1455 3032 3.151958 GATCTTAGCGGCCGCCTCA 62.152 63.158 44.47 28.22 43.17 3.86
1853 3727 9.361315 TGATCATTTTAGATTGCAATCAAGTTG 57.639 29.630 34.59 24.54 40.90 3.16
1900 3822 5.565592 TGCAGATGAACGAAAAGCAATAT 57.434 34.783 0.00 0.00 0.00 1.28
1940 3867 5.645056 AAAAACATTGTTTCCCTTCCCAT 57.355 34.783 14.80 0.00 0.00 4.00
2133 4414 7.759489 TTAAAGGCATGTTCAACAGAGTATT 57.241 32.000 0.00 0.00 0.00 1.89
2142 4423 5.212532 ACAGCATTTAAAGGCATGTTCAA 57.787 34.783 25.04 0.00 38.35 2.69
2145 4426 5.421693 TCCATACAGCATTTAAAGGCATGTT 59.578 36.000 25.04 13.54 38.35 2.71
2157 4438 4.652881 TCACAGAGAGATCCATACAGCATT 59.347 41.667 0.00 0.00 0.00 3.56
2186 4468 5.419239 GGAACCCCATTTGAATTCATGAA 57.581 39.130 11.26 11.26 0.00 2.57
2245 4550 9.141400 GTAAACTGTGTGAACCATTTACAAAAA 57.859 29.630 0.00 0.00 34.28 1.94
2373 4704 7.801716 TGGCTTGTTTACATATTCCTACATC 57.198 36.000 0.00 0.00 0.00 3.06
2439 4797 5.063204 TCCAATGGCGTAGGAATATTTCTG 58.937 41.667 6.51 0.00 0.00 3.02
2450 4890 1.336887 CGTAGGGATCCAATGGCGTAG 60.337 57.143 15.23 0.00 0.00 3.51
2508 4954 2.550606 GCATCGGCGGAAAATATTGGTA 59.449 45.455 7.21 0.00 0.00 3.25
2521 4967 3.545481 GACACGTCTGCATCGGCG 61.545 66.667 0.00 0.00 45.35 6.46
2533 4979 3.844657 CACGCTACTGTACTTAAGACACG 59.155 47.826 10.09 10.67 0.00 4.49
2647 5600 5.330455 TCAAGTAGGAGTATGACAAGCAG 57.670 43.478 0.00 0.00 0.00 4.24
2684 5637 5.486526 CAGCCAGAAAGTGAGAATAGTCTT 58.513 41.667 0.00 0.00 32.80 3.01
2689 5642 2.621338 CGCAGCCAGAAAGTGAGAATA 58.379 47.619 0.00 0.00 0.00 1.75
2713 5666 4.944619 ATGACTGCTACTGCTATGCTTA 57.055 40.909 0.00 0.00 40.48 3.09
2746 5706 2.813172 TCAGCATGCGAAACATCTTCAA 59.187 40.909 13.01 0.00 36.64 2.69
2747 5707 2.425539 TCAGCATGCGAAACATCTTCA 58.574 42.857 13.01 0.00 36.64 3.02
2751 5711 2.907910 ACTTCAGCATGCGAAACATC 57.092 45.000 20.08 0.00 36.64 3.06
2881 8350 6.200475 GGTACGCATAGACTTTCTACAAATCC 59.800 42.308 0.00 0.00 30.79 3.01
2937 8410 5.827326 AGGATAATTCAGGTAGGCCTAAC 57.173 43.478 21.00 21.00 44.97 2.34
2957 8436 3.865745 CGTGTTTCTTCTGCTACCATAGG 59.134 47.826 0.00 0.00 0.00 2.57
3182 8683 1.654954 CTGCCTGCTGCTGCCTAAAG 61.655 60.000 13.47 3.46 42.00 1.85
3258 8829 8.593492 AAGGTTTAACTTCAAATCTTCAATGC 57.407 30.769 0.00 0.00 34.48 3.56
3275 9194 8.415950 AATGTTGTCATGGTGATAAGGTTTAA 57.584 30.769 0.00 0.00 34.19 1.52
3277 9196 6.916360 AATGTTGTCATGGTGATAAGGTTT 57.084 33.333 0.00 0.00 34.19 3.27
3347 9267 7.700505 TGAAAAGCTCTGCTGATGTATTATTG 58.299 34.615 0.00 0.00 39.62 1.90
3348 9268 7.870509 TGAAAAGCTCTGCTGATGTATTATT 57.129 32.000 0.00 0.00 39.62 1.40
3380 9300 6.489361 ACTTGTGAGAGAGAAAATCAAAGCAT 59.511 34.615 0.00 0.00 0.00 3.79
3382 9302 6.311055 ACTTGTGAGAGAGAAAATCAAAGC 57.689 37.500 0.00 0.00 0.00 3.51
3395 9317 8.186178 ACAATAATTTAGCGTACTTGTGAGAG 57.814 34.615 0.00 0.00 0.00 3.20
3397 9319 7.692291 CCAACAATAATTTAGCGTACTTGTGAG 59.308 37.037 0.00 0.00 0.00 3.51
3398 9320 7.523219 CCAACAATAATTTAGCGTACTTGTGA 58.477 34.615 0.00 0.00 0.00 3.58
3399 9321 6.250527 GCCAACAATAATTTAGCGTACTTGTG 59.749 38.462 0.00 0.00 0.00 3.33
3400 9322 6.150474 AGCCAACAATAATTTAGCGTACTTGT 59.850 34.615 0.00 0.00 0.00 3.16
3401 9323 6.551736 AGCCAACAATAATTTAGCGTACTTG 58.448 36.000 0.00 0.00 0.00 3.16
3440 9366 1.473258 ACAGCAAGTGCAGGAAACAA 58.527 45.000 6.00 0.00 45.16 2.83
3472 9398 2.536803 GCATTACGCGAAAACGATAGGA 59.463 45.455 15.93 0.00 43.77 2.94
3473 9399 2.887733 GCATTACGCGAAAACGATAGG 58.112 47.619 15.93 0.00 43.77 2.57
3657 9598 0.723414 CGGTGCTGCAGACAGTAATG 59.277 55.000 20.43 0.00 46.30 1.90
3709 9650 3.991051 ACGGGTGAGCTGTCCACG 61.991 66.667 0.00 2.18 35.48 4.94
3717 9658 0.527817 CTATCGTTCCACGGGTGAGC 60.528 60.000 0.00 0.00 42.81 4.26
3739 9680 5.355596 GGAGTTCTGTCCATGAATCACTAG 58.644 45.833 0.00 0.00 36.51 2.57
3748 9689 0.460987 GAGGCGGAGTTCTGTCCATG 60.461 60.000 0.00 0.00 36.23 3.66
3749 9690 1.901085 GAGGCGGAGTTCTGTCCAT 59.099 57.895 0.00 0.00 36.23 3.41
3750 9691 2.636412 CGAGGCGGAGTTCTGTCCA 61.636 63.158 0.00 0.00 36.23 4.02
3751 9692 2.182030 CGAGGCGGAGTTCTGTCC 59.818 66.667 0.00 0.00 0.00 4.02
3753 9694 2.651361 CACGAGGCGGAGTTCTGT 59.349 61.111 0.00 0.00 0.00 3.41
3754 9695 2.125912 CCACGAGGCGGAGTTCTG 60.126 66.667 0.00 0.00 0.00 3.02
3755 9696 1.906824 TTCCACGAGGCGGAGTTCT 60.907 57.895 0.00 0.00 33.01 3.01
3796 9739 6.770785 CCTCGACTTCCATTGGGATAAATAAA 59.229 38.462 2.09 0.00 44.48 1.40
3797 9740 6.126594 ACCTCGACTTCCATTGGGATAAATAA 60.127 38.462 2.09 0.00 44.48 1.40
3798 9741 5.368523 ACCTCGACTTCCATTGGGATAAATA 59.631 40.000 2.09 0.00 44.48 1.40
3799 9742 4.166144 ACCTCGACTTCCATTGGGATAAAT 59.834 41.667 2.09 0.00 44.48 1.40
3843 9786 3.768757 CCAAAAATCACCTTGCCTCCATA 59.231 43.478 0.00 0.00 0.00 2.74
3850 9793 2.078392 CATGCCCAAAAATCACCTTGC 58.922 47.619 0.00 0.00 0.00 4.01
3928 9871 1.247567 ATCCGAGCTTGGTTTTGGTG 58.752 50.000 19.96 0.00 0.00 4.17
3955 9898 0.611714 TCGCCCAAACCTCTCTTACC 59.388 55.000 0.00 0.00 0.00 2.85
3957 9900 4.163458 ACATATTCGCCCAAACCTCTCTTA 59.837 41.667 0.00 0.00 0.00 2.10
3961 9904 2.643551 CACATATTCGCCCAAACCTCT 58.356 47.619 0.00 0.00 0.00 3.69
3964 9907 0.102300 GCCACATATTCGCCCAAACC 59.898 55.000 0.00 0.00 0.00 3.27
3966 9909 1.550327 TTGCCACATATTCGCCCAAA 58.450 45.000 0.00 0.00 0.00 3.28
4193 10144 7.063308 GTCATACCAAAGCCAATTTGTACATTG 59.937 37.037 0.00 0.00 45.78 2.82
4354 10305 5.432157 CATTAAACATGAACGACTATCGGC 58.568 41.667 0.00 0.00 45.59 5.54
4360 10311 7.792374 ATGATAGCATTAAACATGAACGACT 57.208 32.000 0.00 0.00 0.00 4.18
4387 10338 5.769662 TCAATCTCTCTCAGATCTAGGCTTC 59.230 44.000 0.00 0.00 41.47 3.86
4395 10346 4.261155 CGTGAGGTCAATCTCTCTCAGATC 60.261 50.000 0.00 0.00 41.47 2.75
4417 10368 1.663695 CCAAGTGTATTGCCTACCCG 58.336 55.000 0.00 0.00 0.00 5.28
4494 10445 6.126507 ACCAGAGGAAAATTTTGTTCCCATTT 60.127 34.615 8.47 0.00 44.90 2.32
4508 10459 4.141287 CACACACCATTACCAGAGGAAAA 58.859 43.478 0.00 0.00 0.00 2.29
4517 10468 2.144730 TGTAACGCACACACCATTACC 58.855 47.619 0.00 0.00 30.04 2.85
4518 10469 3.881780 TTGTAACGCACACACCATTAC 57.118 42.857 0.00 0.00 36.69 1.89
4520 10471 2.946329 TCTTTGTAACGCACACACCATT 59.054 40.909 0.00 0.00 36.69 3.16
4522 10473 1.937223 CTCTTTGTAACGCACACACCA 59.063 47.619 0.00 0.00 36.69 4.17
4523 10474 1.263217 CCTCTTTGTAACGCACACACC 59.737 52.381 0.00 0.00 36.69 4.16
4527 10478 5.580691 CAGATATTCCTCTTTGTAACGCACA 59.419 40.000 0.00 0.00 34.51 4.57
4531 10482 7.827819 TTGTCAGATATTCCTCTTTGTAACG 57.172 36.000 0.00 0.00 0.00 3.18
4554 10505 3.094484 TCAACAAGAAGGGGTGTGTTT 57.906 42.857 0.00 0.00 31.98 2.83
4586 10537 4.125703 GTTTTTGTTTCCATGATGCACCA 58.874 39.130 0.00 0.00 0.00 4.17
4589 10540 5.856156 AGATGTTTTTGTTTCCATGATGCA 58.144 33.333 0.00 0.00 0.00 3.96



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.