Multiple sequence alignment - TraesCS7D01G208200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G208200 chr7D 100.000 9128 0 0 1 9128 165736316 165727189 0.000000e+00 16857.0
1 TraesCS7D01G208200 chr7B 95.517 9191 274 56 3 9128 129662947 129653830 0.000000e+00 14563.0
2 TraesCS7D01G208200 chr7A 97.830 7144 94 17 340 7464 167280976 167273875 0.000000e+00 12277.0
3 TraesCS7D01G208200 chr7A 92.207 1065 55 12 7560 8603 167273838 167272781 0.000000e+00 1482.0
4 TraesCS7D01G208200 chr7A 93.074 462 24 5 2 457 167281434 167280975 0.000000e+00 669.0
5 TraesCS7D01G208200 chr2D 81.961 255 42 4 7867 8119 146308179 146308431 7.180000e-51 213.0
6 TraesCS7D01G208200 chr3A 85.308 211 21 8 8811 9017 46168427 46168223 9.290000e-50 209.0
7 TraesCS7D01G208200 chr2B 81.569 255 43 4 7867 8119 206375935 206376187 3.340000e-49 207.0
8 TraesCS7D01G208200 chr2A 81.746 252 42 4 7870 8119 155942143 155941894 3.340000e-49 207.0
9 TraesCS7D01G208200 chr3B 84.925 199 23 4 8790 8985 56343424 56343230 2.600000e-45 195.0
10 TraesCS7D01G208200 chr3B 88.136 59 5 1 8813 8869 651263389 651263331 1.640000e-07 69.4
11 TraesCS7D01G208200 chr1B 79.695 197 32 5 8822 9014 55462081 55462273 1.600000e-27 135.0
12 TraesCS7D01G208200 chr1B 97.436 39 1 0 8665 8703 20179408 20179370 5.920000e-07 67.6
13 TraesCS7D01G208200 chrUn 89.583 48 4 1 8655 8702 340110418 340110372 9.900000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G208200 chr7D 165727189 165736316 9127 True 16857.000000 16857 100.000000 1 9128 1 chr7D.!!$R1 9127
1 TraesCS7D01G208200 chr7B 129653830 129662947 9117 True 14563.000000 14563 95.517000 3 9128 1 chr7B.!!$R1 9125
2 TraesCS7D01G208200 chr7A 167272781 167281434 8653 True 4809.333333 12277 94.370333 2 8603 3 chr7A.!!$R1 8601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.106419 TGGTCTTTGGGGGACAACAC 60.106 55.000 0.00 0.0 39.19 3.32 F
495 621 3.911964 CGAATTACAAGGCAGGAAAAACG 59.088 43.478 0.00 0.0 0.00 3.60 F
1633 1759 1.083489 TGGATTCACCGAATTGCGAC 58.917 50.000 0.00 0.0 44.57 5.19 F
3409 3544 0.321298 ACACGTTTTCTCATCCCCCG 60.321 55.000 0.00 0.0 0.00 5.73 F
3879 4014 1.872952 CCATCGTTGTTGCAGACTTCA 59.127 47.619 0.00 0.0 0.00 3.02 F
4980 5133 0.185901 ACTGTGCTGGTGGGTTGAAT 59.814 50.000 0.00 0.0 0.00 2.57 F
4981 5134 1.331214 CTGTGCTGGTGGGTTGAATT 58.669 50.000 0.00 0.0 0.00 2.17 F
6492 6647 0.957395 CTGTGACCCATCTGTGCACC 60.957 60.000 15.69 0.0 0.00 5.01 F
7219 7389 1.425448 CAGTCCTGGTCCCCTTTTCTT 59.575 52.381 0.00 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1308 1.242665 ACCTCGAGGAAGACGGTGTC 61.243 60.000 37.69 0.00 38.94 3.67 R
2026 2152 1.352622 TGGGATCCATGCTACCACCC 61.353 60.000 15.23 0.00 36.72 4.61 R
3587 3722 4.283722 GGGGTTCTCGTTATGATCAGGTAT 59.716 45.833 0.09 0.00 0.00 2.73 R
4937 5090 5.748670 TGTAGCCTACCACATACTTTGAA 57.251 39.130 0.00 0.00 0.00 2.69 R
5826 5980 4.755123 ACACTTTGTGATAGAAGGAAACGG 59.245 41.667 4.61 0.00 36.96 4.44 R
6492 6647 1.069022 CATGTTCTTGGCAACGACCTG 60.069 52.381 0.00 0.00 42.51 4.00 R
6816 6971 1.202498 GGTCGGTGCACCCTAGAATAC 60.202 57.143 29.95 15.17 0.00 1.89 R
7333 7503 0.179029 AGAAACAAGGGACCCGTGTG 60.179 55.000 29.78 19.23 44.77 3.82 R
9053 9273 1.006832 CAATACGCAGAACTTCCCGG 58.993 55.000 0.00 0.00 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 0.106419 TGGTCTTTGGGGGACAACAC 60.106 55.000 0.00 0.00 39.19 3.32
472 596 8.704668 AGAAAGGCAAAAAGGAAAGAAGATAAA 58.295 29.630 0.00 0.00 0.00 1.40
495 621 3.911964 CGAATTACAAGGCAGGAAAAACG 59.088 43.478 0.00 0.00 0.00 3.60
682 808 4.828296 TACCCCGGACTCCGCTCC 62.828 72.222 12.37 0.00 46.86 4.70
1194 1320 2.260743 GTCCCGACACCGTCTTCC 59.739 66.667 0.00 0.00 0.00 3.46
1357 1483 6.235231 AGTATTGGTTATGAAGACGGTGAT 57.765 37.500 0.00 0.00 0.00 3.06
1633 1759 1.083489 TGGATTCACCGAATTGCGAC 58.917 50.000 0.00 0.00 44.57 5.19
2026 2152 1.131883 GTGCAGCCAGATACAAGCAAG 59.868 52.381 0.00 0.00 33.37 4.01
2168 2303 6.377146 TCATGGTATTTTTGGAGCTAAAGGAC 59.623 38.462 0.00 0.00 0.00 3.85
2806 2941 8.730680 CACATAGAACTGTTTGCTACCTTTAAT 58.269 33.333 0.00 0.00 0.00 1.40
2988 3123 2.476241 GTGGCAGTTTAATTGTGCAAGC 59.524 45.455 0.00 0.00 39.05 4.01
3409 3544 0.321298 ACACGTTTTCTCATCCCCCG 60.321 55.000 0.00 0.00 0.00 5.73
3464 3599 2.364972 AGTTGGAAAAGGGACACCAG 57.635 50.000 0.00 0.00 40.13 4.00
3587 3722 3.674997 GAAGAACATGCAGGAGTAACCA 58.325 45.455 4.84 0.00 42.04 3.67
3879 4014 1.872952 CCATCGTTGTTGCAGACTTCA 59.127 47.619 0.00 0.00 0.00 3.02
4937 5090 7.524717 ACTGTTACATGGTTTTATTCTGCTT 57.475 32.000 0.00 0.00 0.00 3.91
4979 5132 0.840617 TACTGTGCTGGTGGGTTGAA 59.159 50.000 0.00 0.00 0.00 2.69
4980 5133 0.185901 ACTGTGCTGGTGGGTTGAAT 59.814 50.000 0.00 0.00 0.00 2.57
4981 5134 1.331214 CTGTGCTGGTGGGTTGAATT 58.669 50.000 0.00 0.00 0.00 2.17
5342 5496 2.289882 TGCTCAGAAGAGAACATGGTGG 60.290 50.000 0.00 0.00 44.98 4.61
5826 5980 1.680338 GTATGGTTGATGGTGAGGGC 58.320 55.000 0.00 0.00 0.00 5.19
6324 6478 2.695359 TCATTTGAGGACTACGCAACC 58.305 47.619 0.00 0.00 38.64 3.77
6492 6647 0.957395 CTGTGACCCATCTGTGCACC 60.957 60.000 15.69 0.00 0.00 5.01
6775 6930 7.224297 TCTTTTCTGGCAGTAAGTGACTTTAT 58.776 34.615 22.17 0.00 35.64 1.40
6816 6971 7.138081 TGTCTGTTGTTTACATGCTTGTAATG 58.862 34.615 21.72 2.95 45.33 1.90
6857 7012 4.083565 CCTAGTATGTCTAGAAGGCCTCC 58.916 52.174 5.23 0.00 46.53 4.30
6964 7119 3.983344 GTCATGCACATGTTTCCACTTTC 59.017 43.478 10.27 0.00 39.72 2.62
7093 7263 6.262207 GGGGGCCTAACTAGAGATAAGATAA 58.738 44.000 0.84 0.00 0.00 1.75
7095 7265 7.070198 GGGGGCCTAACTAGAGATAAGATAATC 59.930 44.444 0.84 0.00 0.00 1.75
7096 7266 7.842236 GGGGCCTAACTAGAGATAAGATAATCT 59.158 40.741 0.84 0.00 38.95 2.40
7097 7267 8.691797 GGGCCTAACTAGAGATAAGATAATCTG 58.308 40.741 0.84 0.00 36.33 2.90
7098 7268 9.250246 GGCCTAACTAGAGATAAGATAATCTGT 57.750 37.037 0.00 0.00 36.33 3.41
7219 7389 1.425448 CAGTCCTGGTCCCCTTTTCTT 59.575 52.381 0.00 0.00 0.00 2.52
7253 7423 2.358615 GCGGTCACAGCATGGTCA 60.359 61.111 0.00 0.00 43.62 4.02
7330 7500 3.260632 TGCATGTTTCTAGGTAGACAGCA 59.739 43.478 0.00 0.00 30.81 4.41
7331 7501 3.619038 GCATGTTTCTAGGTAGACAGCAC 59.381 47.826 0.00 0.00 30.81 4.40
7332 7502 4.820897 CATGTTTCTAGGTAGACAGCACA 58.179 43.478 0.00 0.00 30.81 4.57
7333 7503 4.252971 TGTTTCTAGGTAGACAGCACAC 57.747 45.455 0.00 0.00 30.81 3.82
7341 7511 1.396607 TAGACAGCACACACACGGGT 61.397 55.000 0.00 0.00 0.00 5.28
7438 7608 9.613428 TGACATCCAAAGTGGTTATAAAGATAG 57.387 33.333 0.00 0.00 39.03 2.08
7439 7609 9.614792 GACATCCAAAGTGGTTATAAAGATAGT 57.385 33.333 0.00 0.00 39.03 2.12
7471 7641 5.419239 AAACAATATTGGTGATTGTGGGG 57.581 39.130 19.37 0.00 44.75 4.96
7472 7642 4.329638 ACAATATTGGTGATTGTGGGGA 57.670 40.909 19.37 0.00 44.03 4.81
7473 7643 4.280819 ACAATATTGGTGATTGTGGGGAG 58.719 43.478 19.37 0.00 44.03 4.30
7474 7644 4.017591 ACAATATTGGTGATTGTGGGGAGA 60.018 41.667 19.37 0.00 44.03 3.71
7475 7645 5.142639 CAATATTGGTGATTGTGGGGAGAT 58.857 41.667 7.62 0.00 31.00 2.75
7476 7646 6.126215 ACAATATTGGTGATTGTGGGGAGATA 60.126 38.462 19.37 0.00 44.03 1.98
7477 7647 4.879295 ATTGGTGATTGTGGGGAGATAA 57.121 40.909 0.00 0.00 0.00 1.75
7478 7648 3.931907 TGGTGATTGTGGGGAGATAAG 57.068 47.619 0.00 0.00 0.00 1.73
7479 7649 2.509548 TGGTGATTGTGGGGAGATAAGG 59.490 50.000 0.00 0.00 0.00 2.69
7506 7676 4.702131 GCTAAAGGATTGATGTGAAGGTGT 59.298 41.667 0.00 0.00 0.00 4.16
7556 7739 1.075542 TTATCGAACTTGCAGCCACG 58.924 50.000 0.00 0.00 0.00 4.94
7579 7762 4.792704 GCATGACGTGTTTTCTGTTTCCAT 60.793 41.667 0.00 0.00 0.00 3.41
7585 7768 7.280428 TGACGTGTTTTCTGTTTCCATAAGTTA 59.720 33.333 0.00 0.00 0.00 2.24
7644 7831 4.002982 GTCAACATGGCAACTATCAGTCA 58.997 43.478 0.00 0.00 37.61 3.41
7734 7921 7.958025 GCTTAGCATCTTTAGTATATTTTCCGC 59.042 37.037 0.00 0.00 0.00 5.54
7760 7948 6.658831 TCTGTTTGACAAAATCGATCTGAAC 58.341 36.000 12.95 8.30 0.00 3.18
7831 8019 1.067425 GTTGCTCTTTGGCATGCATGA 60.067 47.619 30.64 7.50 42.09 3.07
7832 8020 1.480789 TGCTCTTTGGCATGCATGAT 58.519 45.000 30.64 0.00 37.29 2.45
7833 8021 1.407618 TGCTCTTTGGCATGCATGATC 59.592 47.619 30.64 20.08 37.29 2.92
7941 8129 1.661463 AGAAAGAGCTGGTGATGGGA 58.339 50.000 0.00 0.00 0.00 4.37
8013 8201 1.521681 GAAGGCGTCGGGGATTCTG 60.522 63.158 0.00 0.00 0.00 3.02
8202 8390 2.893682 ATAGCAACTGGGAAGCGGCC 62.894 60.000 0.00 0.00 0.00 6.13
8262 8452 1.032794 AGTCATCGATCTGCGCCTTA 58.967 50.000 4.18 0.00 40.61 2.69
8469 8659 0.392998 TCGATCCTTTCTTGGCTGGC 60.393 55.000 0.00 0.00 0.00 4.85
8470 8660 0.677731 CGATCCTTTCTTGGCTGGCA 60.678 55.000 0.00 0.00 0.00 4.92
8474 8664 0.538057 CCTTTCTTGGCTGGCACTCA 60.538 55.000 2.29 0.00 0.00 3.41
8475 8665 0.595095 CTTTCTTGGCTGGCACTCAC 59.405 55.000 2.29 0.00 0.00 3.51
8478 8668 0.535780 TCTTGGCTGGCACTCACAAG 60.536 55.000 2.29 0.00 39.76 3.16
8479 8669 1.521450 CTTGGCTGGCACTCACAAGG 61.521 60.000 2.29 0.00 35.96 3.61
8481 8671 1.228245 GGCTGGCACTCACAAGGAA 60.228 57.895 0.00 0.00 0.00 3.36
8482 8672 1.518903 GGCTGGCACTCACAAGGAAC 61.519 60.000 0.00 0.00 0.00 3.62
8501 8691 7.299246 AGGAACTTGCTTACTAGTTACTTCA 57.701 36.000 0.00 0.00 46.62 3.02
8502 8692 7.732996 AGGAACTTGCTTACTAGTTACTTCAA 58.267 34.615 0.00 0.00 46.62 2.69
8544 8754 5.462398 CGTTACTACTGCCTTCATTCCATAC 59.538 44.000 0.00 0.00 0.00 2.39
8545 8755 4.423625 ACTACTGCCTTCATTCCATACC 57.576 45.455 0.00 0.00 0.00 2.73
8546 8756 4.040755 ACTACTGCCTTCATTCCATACCT 58.959 43.478 0.00 0.00 0.00 3.08
8639 8857 5.291971 TCATTGGATACGTCATGAGACATG 58.708 41.667 0.00 5.51 45.23 3.21
8643 8861 4.122776 GGATACGTCATGAGACATGCTTT 58.877 43.478 0.00 0.00 45.23 3.51
8651 8869 9.325198 ACGTCATGAGACATGCTTTTATATTAA 57.675 29.630 0.00 0.00 45.23 1.40
8719 8937 7.186021 AGGTCAAACTCTACAATGTTTAACG 57.814 36.000 0.00 0.00 35.01 3.18
8721 8939 7.281549 AGGTCAAACTCTACAATGTTTAACGTT 59.718 33.333 5.88 5.88 35.01 3.99
8738 8956 7.995463 TTAACGTTTGAAAAAGAAATGGAGG 57.005 32.000 5.91 0.00 0.00 4.30
8739 8957 5.845391 ACGTTTGAAAAAGAAATGGAGGA 57.155 34.783 0.00 0.00 0.00 3.71
8740 8958 6.215495 ACGTTTGAAAAAGAAATGGAGGAA 57.785 33.333 0.00 0.00 0.00 3.36
8741 8959 6.273071 ACGTTTGAAAAAGAAATGGAGGAAG 58.727 36.000 0.00 0.00 0.00 3.46
8742 8960 6.127451 ACGTTTGAAAAAGAAATGGAGGAAGT 60.127 34.615 0.00 0.00 0.00 3.01
8743 8961 7.067737 ACGTTTGAAAAAGAAATGGAGGAAGTA 59.932 33.333 0.00 0.00 0.00 2.24
8744 8962 7.378728 CGTTTGAAAAAGAAATGGAGGAAGTAC 59.621 37.037 0.00 0.00 0.00 2.73
8745 8963 8.414003 GTTTGAAAAAGAAATGGAGGAAGTACT 58.586 33.333 0.00 0.00 0.00 2.73
8746 8964 9.635404 TTTGAAAAAGAAATGGAGGAAGTACTA 57.365 29.630 0.00 0.00 0.00 1.82
8747 8965 8.617290 TGAAAAAGAAATGGAGGAAGTACTAC 57.383 34.615 0.00 0.00 0.00 2.73
8765 8983 6.841755 AGTACTACCAAGGCTGAATATCTTCT 59.158 38.462 0.00 0.00 32.29 2.85
8766 8984 5.923204 ACTACCAAGGCTGAATATCTTCTG 58.077 41.667 0.00 0.00 34.44 3.02
8767 8985 5.663106 ACTACCAAGGCTGAATATCTTCTGA 59.337 40.000 0.00 0.00 33.45 3.27
8769 8987 6.011122 ACCAAGGCTGAATATCTTCTGATT 57.989 37.500 0.00 0.00 33.45 2.57
8770 8988 6.430007 ACCAAGGCTGAATATCTTCTGATTT 58.570 36.000 0.00 0.00 33.45 2.17
8771 8989 6.320672 ACCAAGGCTGAATATCTTCTGATTTG 59.679 38.462 0.00 5.34 33.45 2.32
8772 8990 6.238953 CCAAGGCTGAATATCTTCTGATTTGG 60.239 42.308 13.58 13.58 38.04 3.28
8773 8991 4.826183 AGGCTGAATATCTTCTGATTTGGC 59.174 41.667 2.45 0.00 33.45 4.52
8774 8992 4.022503 GGCTGAATATCTTCTGATTTGGCC 60.023 45.833 0.00 0.00 33.45 5.36
8775 8993 4.826183 GCTGAATATCTTCTGATTTGGCCT 59.174 41.667 3.32 0.00 33.45 5.19
8776 8994 6.000219 GCTGAATATCTTCTGATTTGGCCTA 59.000 40.000 3.32 0.00 33.45 3.93
8777 8995 6.658391 GCTGAATATCTTCTGATTTGGCCTAT 59.342 38.462 3.32 0.00 33.45 2.57
8804 9022 9.868277 TTTCTTTTGAAAATGCTAAAAGTCTGA 57.132 25.926 0.00 0.00 44.51 3.27
8806 9024 9.467258 TCTTTTGAAAATGCTAAAAGTCTGATG 57.533 29.630 0.00 0.00 40.49 3.07
8807 9025 9.252962 CTTTTGAAAATGCTAAAAGTCTGATGT 57.747 29.630 0.00 0.00 36.91 3.06
8808 9026 9.598517 TTTTGAAAATGCTAAAAGTCTGATGTT 57.401 25.926 0.00 0.00 0.00 2.71
8825 9043 9.076596 GTCTGATGTTAAATTTTTAGACATGGC 57.923 33.333 0.00 0.00 31.21 4.40
8834 9052 8.776376 AAATTTTTAGACATGGCAAATCGAAT 57.224 26.923 0.00 0.00 0.00 3.34
8858 9076 7.959689 TGTTTTCCATGACAATTTATGTTGG 57.040 32.000 0.00 0.00 44.12 3.77
8859 9077 7.504403 TGTTTTCCATGACAATTTATGTTGGT 58.496 30.769 0.00 0.00 44.12 3.67
8861 9079 5.070770 TCCATGACAATTTATGTTGGTGC 57.929 39.130 0.00 0.00 44.12 5.01
8869 9087 2.036958 TTATGTTGGTGCGAGGATGG 57.963 50.000 0.00 0.00 0.00 3.51
8870 9088 0.463654 TATGTTGGTGCGAGGATGGC 60.464 55.000 0.00 0.00 41.71 4.40
8902 9120 3.090790 TGCAAGCATAGCAATTTCCTGA 58.909 40.909 0.00 0.00 39.39 3.86
8927 9145 3.855689 AAATGAAGTGAGGCGGATTTG 57.144 42.857 0.00 0.00 0.00 2.32
8936 9154 2.025156 GCGGATTTGCCATGCTCG 59.975 61.111 0.00 0.00 35.94 5.03
8946 9164 2.816958 CATGCTCGCTCGCCAACT 60.817 61.111 0.00 0.00 0.00 3.16
8960 9179 3.751175 TCGCCAACTAAACTTTCATCCTG 59.249 43.478 0.00 0.00 0.00 3.86
8975 9194 9.308000 ACTTTCATCCTGGACAAACATAATTTA 57.692 29.630 0.00 0.00 0.00 1.40
8976 9195 9.573133 CTTTCATCCTGGACAAACATAATTTAC 57.427 33.333 0.00 0.00 0.00 2.01
8977 9196 7.639113 TCATCCTGGACAAACATAATTTACC 57.361 36.000 0.00 0.00 0.00 2.85
8978 9197 7.178573 TCATCCTGGACAAACATAATTTACCA 58.821 34.615 0.00 0.00 0.00 3.25
8979 9198 7.838696 TCATCCTGGACAAACATAATTTACCAT 59.161 33.333 0.00 0.00 0.00 3.55
8980 9199 9.130661 CATCCTGGACAAACATAATTTACCATA 57.869 33.333 0.00 0.00 0.00 2.74
8982 9201 9.535170 TCCTGGACAAACATAATTTACCATAAA 57.465 29.630 0.00 0.00 0.00 1.40
8998 9217 8.882415 TTACCATAAAAACGTTTAATTTGCCA 57.118 26.923 15.03 0.77 32.98 4.92
8999 9218 7.179927 ACCATAAAAACGTTTAATTTGCCAC 57.820 32.000 15.03 0.00 32.98 5.01
9000 9219 6.074249 ACCATAAAAACGTTTAATTTGCCACG 60.074 34.615 15.03 2.78 38.62 4.94
9002 9221 5.378351 AAAAACGTTTAATTTGCCACGTC 57.622 34.783 15.03 0.00 44.81 4.34
9003 9222 3.974871 AACGTTTAATTTGCCACGTCT 57.025 38.095 0.00 0.00 44.81 4.18
9004 9223 5.421212 AAACGTTTAATTTGCCACGTCTA 57.579 34.783 12.83 0.00 44.81 2.59
9019 9238 5.106712 GCCACGTCTAAAAATCTGATGTTCA 60.107 40.000 0.00 0.00 0.00 3.18
9030 9250 8.824159 AAAATCTGATGTTCACTAGATATCCG 57.176 34.615 0.00 0.00 30.19 4.18
9034 9254 5.386060 TGATGTTCACTAGATATCCGGTCT 58.614 41.667 0.00 0.00 0.00 3.85
9042 9262 6.834451 TCACTAGATATCCGGTCTTTCTCTTT 59.166 38.462 0.00 0.00 0.00 2.52
9049 9269 3.135895 TCCGGTCTTTCTCTTTTGACCTT 59.864 43.478 0.00 0.00 44.79 3.50
9053 9273 4.499865 GGTCTTTCTCTTTTGACCTTTGCC 60.500 45.833 0.00 0.00 43.91 4.52
9055 9275 1.604604 TCTCTTTTGACCTTTGCCCG 58.395 50.000 0.00 0.00 0.00 6.13
9056 9276 0.598065 CTCTTTTGACCTTTGCCCGG 59.402 55.000 0.00 0.00 0.00 5.73
9064 9284 1.074951 CCTTTGCCCGGGAAGTTCT 59.925 57.895 29.31 0.00 0.00 3.01
9066 9286 1.866853 CTTTGCCCGGGAAGTTCTGC 61.867 60.000 29.31 6.36 0.00 4.26
9067 9287 4.697756 TGCCCGGGAAGTTCTGCG 62.698 66.667 29.31 0.00 0.00 5.18
9069 9289 2.975536 CCCGGGAAGTTCTGCGTA 59.024 61.111 18.48 0.00 0.00 4.42
9070 9290 1.520666 CCCGGGAAGTTCTGCGTAT 59.479 57.895 18.48 0.00 0.00 3.06
9071 9291 0.107848 CCCGGGAAGTTCTGCGTATT 60.108 55.000 18.48 0.00 0.00 1.89
9072 9292 1.006832 CCGGGAAGTTCTGCGTATTG 58.993 55.000 2.25 0.00 0.00 1.90
9073 9293 1.674817 CCGGGAAGTTCTGCGTATTGT 60.675 52.381 2.25 0.00 0.00 2.71
9074 9294 2.073816 CGGGAAGTTCTGCGTATTGTT 58.926 47.619 2.25 0.00 0.00 2.83
9075 9295 2.482721 CGGGAAGTTCTGCGTATTGTTT 59.517 45.455 2.25 0.00 0.00 2.83
9108 9342 9.167311 GAGAGCCTATTTAGAAAAACAATCTGA 57.833 33.333 0.00 0.00 0.00 3.27
9124 9358 8.523915 AACAATCTGAATAACTATTGGATGCA 57.476 30.769 0.00 0.00 34.38 3.96
9125 9359 8.701908 ACAATCTGAATAACTATTGGATGCAT 57.298 30.769 0.00 0.00 34.38 3.96
9126 9360 9.797642 ACAATCTGAATAACTATTGGATGCATA 57.202 29.630 0.00 0.00 34.38 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.154706 ACCAAACGGAGAATATACTGAAGTCT 59.845 38.462 0.00 0.00 0.00 3.24
63 64 6.037172 CCAAAGACCAAACGGAGAATATACTG 59.963 42.308 0.00 0.00 0.00 2.74
98 99 4.390603 TCGTGATTTTGTCAAATAGGGACG 59.609 41.667 0.00 4.61 38.90 4.79
472 596 4.555906 CGTTTTTCCTGCCTTGTAATTCGT 60.556 41.667 0.00 0.00 0.00 3.85
480 604 4.684242 GGTTTTATCGTTTTTCCTGCCTTG 59.316 41.667 0.00 0.00 0.00 3.61
495 621 3.491639 GTGCCGTTGGTTTTGGTTTTATC 59.508 43.478 0.00 0.00 0.00 1.75
544 670 2.202892 GCGCGGTAGGAGAAAGGG 60.203 66.667 8.83 0.00 0.00 3.95
1182 1308 1.242665 ACCTCGAGGAAGACGGTGTC 61.243 60.000 37.69 0.00 38.94 3.67
1194 1320 2.575993 CACCCAGCAGACCTCGAG 59.424 66.667 5.13 5.13 0.00 4.04
1357 1483 3.982829 CGGTCTCGGTCTGAGTCA 58.017 61.111 8.56 0.00 45.46 3.41
1888 2014 2.480073 CCTGAAATGCCCATGTAAAGCG 60.480 50.000 0.00 0.00 0.00 4.68
2026 2152 1.352622 TGGGATCCATGCTACCACCC 61.353 60.000 15.23 0.00 36.72 4.61
3242 3377 8.206189 AGTTCTGTCACCAATGATTTGAAAATT 58.794 29.630 0.00 0.00 37.14 1.82
3587 3722 4.283722 GGGGTTCTCGTTATGATCAGGTAT 59.716 45.833 0.09 0.00 0.00 2.73
3879 4014 2.854963 TCTTTGCAAGACTCACAGCAT 58.145 42.857 0.00 0.00 36.80 3.79
4937 5090 5.748670 TGTAGCCTACCACATACTTTGAA 57.251 39.130 0.00 0.00 0.00 2.69
5780 5934 5.470098 GGAAGTGACAGCTTATTTGTGAAGA 59.530 40.000 0.00 0.00 0.00 2.87
5826 5980 4.755123 ACACTTTGTGATAGAAGGAAACGG 59.245 41.667 4.61 0.00 36.96 4.44
6175 6329 5.106317 GGCTCAAAGAACGAATGTAATCCAA 60.106 40.000 0.00 0.00 0.00 3.53
6431 6585 6.464530 AACCTTACAGGACCCTAGAAAAAT 57.535 37.500 0.00 0.00 37.67 1.82
6433 6587 7.391388 TTTAACCTTACAGGACCCTAGAAAA 57.609 36.000 0.00 0.00 37.67 2.29
6470 6625 1.160137 GCACAGATGGGTCACAGTTC 58.840 55.000 0.00 0.00 0.00 3.01
6476 6631 3.573673 TGGTGCACAGATGGGTCA 58.426 55.556 20.43 1.18 0.00 4.02
6492 6647 1.069022 CATGTTCTTGGCAACGACCTG 60.069 52.381 0.00 0.00 42.51 4.00
6775 6930 6.150307 ACAACAGACATACAAAACACAGTGAA 59.850 34.615 7.81 0.00 0.00 3.18
6786 6941 6.875948 AGCATGTAAACAACAGACATACAA 57.124 33.333 0.00 0.00 42.70 2.41
6816 6971 1.202498 GGTCGGTGCACCCTAGAATAC 60.202 57.143 29.95 15.17 0.00 1.89
7017 7172 5.034852 TCCAAGATTCATAGCGATTCCAA 57.965 39.130 0.00 0.00 0.00 3.53
7018 7173 4.635223 CTCCAAGATTCATAGCGATTCCA 58.365 43.478 0.00 0.00 0.00 3.53
7019 7174 3.434984 GCTCCAAGATTCATAGCGATTCC 59.565 47.826 0.00 0.00 0.00 3.01
7020 7175 3.434984 GGCTCCAAGATTCATAGCGATTC 59.565 47.826 0.00 0.00 33.96 2.52
7021 7176 3.072184 AGGCTCCAAGATTCATAGCGATT 59.928 43.478 0.00 0.00 33.96 3.34
7022 7177 2.636893 AGGCTCCAAGATTCATAGCGAT 59.363 45.455 0.00 0.00 33.96 4.58
7023 7178 2.042464 AGGCTCCAAGATTCATAGCGA 58.958 47.619 0.00 0.00 33.96 4.93
7024 7179 2.141517 CAGGCTCCAAGATTCATAGCG 58.858 52.381 0.00 0.00 33.96 4.26
7093 7263 9.784531 CCCATGTCTAATATCAAGTAAACAGAT 57.215 33.333 0.00 0.00 0.00 2.90
7095 7265 8.964476 ACCCATGTCTAATATCAAGTAAACAG 57.036 34.615 0.00 0.00 0.00 3.16
7096 7266 9.747898 AAACCCATGTCTAATATCAAGTAAACA 57.252 29.630 0.00 0.00 0.00 2.83
7100 7270 9.613428 CAAGAAACCCATGTCTAATATCAAGTA 57.387 33.333 0.00 0.00 0.00 2.24
7101 7271 8.328758 TCAAGAAACCCATGTCTAATATCAAGT 58.671 33.333 0.00 0.00 0.00 3.16
7102 7272 8.737168 TCAAGAAACCCATGTCTAATATCAAG 57.263 34.615 0.00 0.00 0.00 3.02
7103 7273 7.775093 CCTCAAGAAACCCATGTCTAATATCAA 59.225 37.037 0.00 0.00 0.00 2.57
7104 7274 7.282585 CCTCAAGAAACCCATGTCTAATATCA 58.717 38.462 0.00 0.00 0.00 2.15
7105 7275 6.712547 CCCTCAAGAAACCCATGTCTAATATC 59.287 42.308 0.00 0.00 0.00 1.63
7106 7276 6.160459 ACCCTCAAGAAACCCATGTCTAATAT 59.840 38.462 0.00 0.00 0.00 1.28
7107 7277 5.491078 ACCCTCAAGAAACCCATGTCTAATA 59.509 40.000 0.00 0.00 0.00 0.98
7108 7278 4.292306 ACCCTCAAGAAACCCATGTCTAAT 59.708 41.667 0.00 0.00 0.00 1.73
7109 7279 3.655777 ACCCTCAAGAAACCCATGTCTAA 59.344 43.478 0.00 0.00 0.00 2.10
7110 7280 3.256704 ACCCTCAAGAAACCCATGTCTA 58.743 45.455 0.00 0.00 0.00 2.59
7111 7281 2.065799 ACCCTCAAGAAACCCATGTCT 58.934 47.619 0.00 0.00 0.00 3.41
7112 7282 2.586648 ACCCTCAAGAAACCCATGTC 57.413 50.000 0.00 0.00 0.00 3.06
7113 7283 4.149598 GTTAACCCTCAAGAAACCCATGT 58.850 43.478 0.00 0.00 0.00 3.21
7114 7284 3.509967 GGTTAACCCTCAAGAAACCCATG 59.490 47.826 14.16 0.00 34.75 3.66
7219 7389 4.624364 CAGGCGCACCACAGTGGA 62.624 66.667 27.39 0.00 44.69 4.02
7253 7423 2.324541 GGATCTGGACCAGAGTAGCAT 58.675 52.381 27.62 11.34 44.08 3.79
7330 7500 1.917336 AACAAGGGACCCGTGTGTGT 61.917 55.000 29.78 13.96 44.77 3.72
7331 7501 0.750182 AAACAAGGGACCCGTGTGTG 60.750 55.000 29.78 14.60 44.77 3.82
7332 7502 0.464916 GAAACAAGGGACCCGTGTGT 60.465 55.000 29.78 25.59 44.77 3.72
7333 7503 0.179029 AGAAACAAGGGACCCGTGTG 60.179 55.000 29.78 19.23 44.77 3.82
7389 7559 3.191371 GCAACAGGAAGGTAGGAAACATG 59.809 47.826 0.00 0.00 0.00 3.21
7464 7634 1.564348 GCTTCCCTTATCTCCCCACAA 59.436 52.381 0.00 0.00 0.00 3.33
7465 7635 1.213296 GCTTCCCTTATCTCCCCACA 58.787 55.000 0.00 0.00 0.00 4.17
7466 7636 1.512735 AGCTTCCCTTATCTCCCCAC 58.487 55.000 0.00 0.00 0.00 4.61
7467 7637 3.431411 TTAGCTTCCCTTATCTCCCCA 57.569 47.619 0.00 0.00 0.00 4.96
7468 7638 3.073209 CCTTTAGCTTCCCTTATCTCCCC 59.927 52.174 0.00 0.00 0.00 4.81
7469 7639 3.974642 TCCTTTAGCTTCCCTTATCTCCC 59.025 47.826 0.00 0.00 0.00 4.30
7470 7640 5.834281 ATCCTTTAGCTTCCCTTATCTCC 57.166 43.478 0.00 0.00 0.00 3.71
7471 7641 6.831976 TCAATCCTTTAGCTTCCCTTATCTC 58.168 40.000 0.00 0.00 0.00 2.75
7472 7642 6.831664 TCAATCCTTTAGCTTCCCTTATCT 57.168 37.500 0.00 0.00 0.00 1.98
7473 7643 7.001073 ACATCAATCCTTTAGCTTCCCTTATC 58.999 38.462 0.00 0.00 0.00 1.75
7474 7644 6.774656 CACATCAATCCTTTAGCTTCCCTTAT 59.225 38.462 0.00 0.00 0.00 1.73
7475 7645 6.069673 TCACATCAATCCTTTAGCTTCCCTTA 60.070 38.462 0.00 0.00 0.00 2.69
7476 7646 4.952335 CACATCAATCCTTTAGCTTCCCTT 59.048 41.667 0.00 0.00 0.00 3.95
7477 7647 4.228210 TCACATCAATCCTTTAGCTTCCCT 59.772 41.667 0.00 0.00 0.00 4.20
7478 7648 4.526970 TCACATCAATCCTTTAGCTTCCC 58.473 43.478 0.00 0.00 0.00 3.97
7479 7649 5.067023 CCTTCACATCAATCCTTTAGCTTCC 59.933 44.000 0.00 0.00 0.00 3.46
7506 7676 3.586470 AGAACCACATGTTGGGTTGTA 57.414 42.857 21.76 0.00 46.96 2.41
7556 7739 3.042887 GGAAACAGAAAACACGTCATGC 58.957 45.455 0.00 0.00 0.00 4.06
7644 7831 8.621286 CCGAATAGCCAAATGAACTAATAACTT 58.379 33.333 0.00 0.00 0.00 2.66
7734 7921 6.834876 TCAGATCGATTTTGTCAAACAGATG 58.165 36.000 0.00 3.95 0.00 2.90
7760 7948 6.040247 TGCTACACCTCAACAATACTAATCG 58.960 40.000 0.00 0.00 0.00 3.34
7831 8019 4.760715 GCAGCACCAATGAGAATAGATGAT 59.239 41.667 0.00 0.00 0.00 2.45
7832 8020 4.132336 GCAGCACCAATGAGAATAGATGA 58.868 43.478 0.00 0.00 0.00 2.92
7833 8021 3.252701 GGCAGCACCAATGAGAATAGATG 59.747 47.826 0.00 0.00 38.86 2.90
7941 8129 3.389329 ACTGGCGGAGATAGTCAATGATT 59.611 43.478 0.00 0.00 0.00 2.57
8262 8452 6.794374 TGATGCGAGCAAAAATAACATACAT 58.206 32.000 0.57 0.00 0.00 2.29
8469 8659 4.130118 AGTAAGCAAGTTCCTTGTGAGTG 58.870 43.478 5.92 0.00 42.77 3.51
8470 8660 4.423625 AGTAAGCAAGTTCCTTGTGAGT 57.576 40.909 5.92 0.00 42.77 3.41
8474 8664 7.063934 AGTAACTAGTAAGCAAGTTCCTTGT 57.936 36.000 0.00 0.00 42.77 3.16
8475 8665 7.656137 TGAAGTAACTAGTAAGCAAGTTCCTTG 59.344 37.037 0.00 0.00 43.57 3.61
8478 8668 7.958053 TTGAAGTAACTAGTAAGCAAGTTCC 57.042 36.000 0.00 0.00 37.19 3.62
8519 8729 3.259876 TGGAATGAAGGCAGTAGTAACGT 59.740 43.478 0.00 0.00 0.00 3.99
8544 8754 7.978975 TGATCAAAGTTTACAAAAGTTCCAAGG 59.021 33.333 0.00 0.00 0.00 3.61
8545 8755 8.925161 TGATCAAAGTTTACAAAAGTTCCAAG 57.075 30.769 0.00 0.00 0.00 3.61
8546 8756 9.364989 CTTGATCAAAGTTTACAAAAGTTCCAA 57.635 29.630 9.88 0.00 0.00 3.53
8610 8828 9.809096 GTCTCATGACGTATCCAATGATTATAT 57.191 33.333 0.00 0.00 33.15 0.86
8651 8869 9.911788 ACCAACATCAATAAGATCAGATAAGTT 57.088 29.630 0.00 0.00 33.72 2.66
8719 8937 8.414003 AGTACTTCCTCCATTTCTTTTTCAAAC 58.586 33.333 0.00 0.00 0.00 2.93
8721 8939 9.063615 GTAGTACTTCCTCCATTTCTTTTTCAA 57.936 33.333 0.00 0.00 0.00 2.69
8738 8956 7.056844 AGATATTCAGCCTTGGTAGTACTTC 57.943 40.000 0.00 0.00 0.00 3.01
8739 8957 7.345914 AGAAGATATTCAGCCTTGGTAGTACTT 59.654 37.037 0.00 0.00 0.00 2.24
8740 8958 6.841755 AGAAGATATTCAGCCTTGGTAGTACT 59.158 38.462 0.00 0.00 0.00 2.73
8741 8959 6.926272 CAGAAGATATTCAGCCTTGGTAGTAC 59.074 42.308 2.42 0.00 0.00 2.73
8742 8960 6.839134 TCAGAAGATATTCAGCCTTGGTAGTA 59.161 38.462 2.42 0.00 0.00 1.82
8743 8961 5.663106 TCAGAAGATATTCAGCCTTGGTAGT 59.337 40.000 2.42 0.00 0.00 2.73
8744 8962 6.166984 TCAGAAGATATTCAGCCTTGGTAG 57.833 41.667 2.42 0.00 0.00 3.18
8745 8963 6.753913 ATCAGAAGATATTCAGCCTTGGTA 57.246 37.500 2.42 0.00 31.14 3.25
8746 8964 5.643421 ATCAGAAGATATTCAGCCTTGGT 57.357 39.130 2.42 0.00 31.14 3.67
8747 8965 6.238953 CCAAATCAGAAGATATTCAGCCTTGG 60.239 42.308 2.42 6.87 33.08 3.61
8765 8983 8.970859 TTTTCAAAAGAAAATAGGCCAAATCA 57.029 26.923 5.01 0.00 0.00 2.57
8766 8984 9.830294 CATTTTCAAAAGAAAATAGGCCAAATC 57.170 29.630 5.01 0.00 41.27 2.17
8767 8985 8.298854 GCATTTTCAAAAGAAAATAGGCCAAAT 58.701 29.630 5.01 0.00 41.27 2.32
8769 8987 6.997476 AGCATTTTCAAAAGAAAATAGGCCAA 59.003 30.769 5.01 0.00 41.27 4.52
8770 8988 6.532826 AGCATTTTCAAAAGAAAATAGGCCA 58.467 32.000 5.01 0.00 41.27 5.36
8771 8989 8.546597 TTAGCATTTTCAAAAGAAAATAGGCC 57.453 30.769 13.84 0.00 41.27 5.19
8799 9017 9.076596 GCCATGTCTAAAAATTTAACATCAGAC 57.923 33.333 0.00 0.00 29.93 3.51
8800 9018 8.801299 TGCCATGTCTAAAAATTTAACATCAGA 58.199 29.630 0.00 0.00 29.93 3.27
8801 9019 8.984891 TGCCATGTCTAAAAATTTAACATCAG 57.015 30.769 0.00 0.00 29.93 2.90
8802 9020 9.770097 TTTGCCATGTCTAAAAATTTAACATCA 57.230 25.926 0.00 0.00 29.93 3.07
8805 9023 8.920665 CGATTTGCCATGTCTAAAAATTTAACA 58.079 29.630 0.00 0.00 0.00 2.41
8806 9024 9.134734 TCGATTTGCCATGTCTAAAAATTTAAC 57.865 29.630 0.00 0.00 0.00 2.01
8807 9025 9.698309 TTCGATTTGCCATGTCTAAAAATTTAA 57.302 25.926 0.00 0.00 0.00 1.52
8808 9026 9.868277 ATTCGATTTGCCATGTCTAAAAATTTA 57.132 25.926 0.00 0.00 0.00 1.40
8809 9027 8.658609 CATTCGATTTGCCATGTCTAAAAATTT 58.341 29.630 0.00 0.00 0.00 1.82
8810 9028 7.818930 ACATTCGATTTGCCATGTCTAAAAATT 59.181 29.630 0.00 0.00 0.00 1.82
8811 9029 7.322664 ACATTCGATTTGCCATGTCTAAAAAT 58.677 30.769 0.00 0.00 0.00 1.82
8812 9030 6.686630 ACATTCGATTTGCCATGTCTAAAAA 58.313 32.000 0.00 0.00 0.00 1.94
8813 9031 6.266168 ACATTCGATTTGCCATGTCTAAAA 57.734 33.333 0.00 0.00 0.00 1.52
8825 9043 7.585286 ATTGTCATGGAAAACATTCGATTTG 57.415 32.000 0.00 0.00 37.84 2.32
8834 9052 7.440556 CACCAACATAAATTGTCATGGAAAACA 59.559 33.333 4.01 0.00 38.14 2.83
8858 9076 3.502191 TTAAATTTGCCATCCTCGCAC 57.498 42.857 0.00 0.00 35.56 5.34
8859 9077 4.734398 AATTAAATTTGCCATCCTCGCA 57.266 36.364 0.00 0.00 0.00 5.10
8936 9154 3.426292 GGATGAAAGTTTAGTTGGCGAGC 60.426 47.826 0.00 0.00 0.00 5.03
8946 9164 8.698973 TTATGTTTGTCCAGGATGAAAGTTTA 57.301 30.769 0.00 0.00 39.69 2.01
8975 9194 6.074249 CGTGGCAAATTAAACGTTTTTATGGT 60.074 34.615 20.19 3.23 0.00 3.55
8976 9195 6.074249 ACGTGGCAAATTAAACGTTTTTATGG 60.074 34.615 20.19 7.96 46.27 2.74
8977 9196 6.868430 ACGTGGCAAATTAAACGTTTTTATG 58.132 32.000 20.19 13.79 46.27 1.90
8985 9204 6.735263 TTTTTAGACGTGGCAAATTAAACG 57.265 33.333 0.00 0.00 41.64 3.60
8986 9205 8.424731 CAGATTTTTAGACGTGGCAAATTAAAC 58.575 33.333 0.00 0.00 0.00 2.01
8988 9207 7.877003 TCAGATTTTTAGACGTGGCAAATTAA 58.123 30.769 0.00 0.00 0.00 1.40
8989 9208 7.441890 TCAGATTTTTAGACGTGGCAAATTA 57.558 32.000 0.00 0.00 0.00 1.40
8990 9209 6.325919 TCAGATTTTTAGACGTGGCAAATT 57.674 33.333 0.00 0.00 0.00 1.82
8991 9210 5.957842 TCAGATTTTTAGACGTGGCAAAT 57.042 34.783 0.00 0.00 0.00 2.32
8993 9212 4.759693 ACATCAGATTTTTAGACGTGGCAA 59.240 37.500 0.00 0.00 0.00 4.52
8995 9214 4.946784 ACATCAGATTTTTAGACGTGGC 57.053 40.909 0.00 0.00 0.00 5.01
8997 9216 7.121974 AGTGAACATCAGATTTTTAGACGTG 57.878 36.000 0.00 0.00 0.00 4.49
8998 9217 8.304596 TCTAGTGAACATCAGATTTTTAGACGT 58.695 33.333 0.00 0.00 0.00 4.34
8999 9218 8.689251 TCTAGTGAACATCAGATTTTTAGACG 57.311 34.615 0.00 0.00 0.00 4.18
9004 9223 9.265901 CGGATATCTAGTGAACATCAGATTTTT 57.734 33.333 2.05 0.00 0.00 1.94
9019 9238 7.342284 TCAAAAGAGAAAGACCGGATATCTAGT 59.658 37.037 9.46 0.18 0.00 2.57
9034 9254 2.360801 CGGGCAAAGGTCAAAAGAGAAA 59.639 45.455 0.00 0.00 0.00 2.52
9042 9262 1.228429 CTTCCCGGGCAAAGGTCAA 60.228 57.895 18.49 0.27 0.00 3.18
9049 9269 2.282180 GCAGAACTTCCCGGGCAA 60.282 61.111 18.49 10.50 0.00 4.52
9053 9273 1.006832 CAATACGCAGAACTTCCCGG 58.993 55.000 0.00 0.00 0.00 5.73
9055 9275 4.499037 AAAACAATACGCAGAACTTCCC 57.501 40.909 0.00 0.00 0.00 3.97
9081 9301 9.171877 CAGATTGTTTTTCTAAATAGGCTCTCT 57.828 33.333 0.00 0.00 0.00 3.10
9083 9303 9.520515 TTCAGATTGTTTTTCTAAATAGGCTCT 57.479 29.630 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.