AutoCloner

Multiple sequence alignment - TraesCS7D01G208000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G208000	chr7D	100.000	3003	0	0	1	3003	165633715	165636717	0.000000e+00	5546.0
1	TraesCS7D01G208000	chr7D	83.621	116	13	4	1479	1591	262698683	262698571	1.470000e-18	104.0
2	TraesCS7D01G208000	chr7A	90.018	2765	130	49	1	2702	167178703	167181384	0.000000e+00	3443.0
3	TraesCS7D01G208000	chr7A	93.160	307	12	3	2697	3003	167181575	167181872	2.750000e-120	442.0
4	TraesCS7D01G208000	chr7A	83.621	116	13	4	1479	1591	285576335	285576223	1.470000e-18	104.0
5	TraesCS7D01G208000	chr7B	91.065	2272	112	37	493	2723	128821574	128823795	0.000000e+00	2987.0
6	TraesCS7D01G208000	chr7B	87.306	386	22	14	1	364	128821135	128821515	1.670000e-112	416.0
7	TraesCS7D01G208000	chr7B	92.115	279	19	1	2721	2999	128847874	128848149	1.010000e-104	390.0
8	TraesCS7D01G208000	chr6D	79.445	613	86	32	991	1587	383745569	383744981	6.030000e-107	398.0
9	TraesCS7D01G208000	chr6D	84.946	372	33	9	1627	1997	157661399	157661748	3.680000e-94	355.0
10	TraesCS7D01G208000	chr3D	85.938	384	32	12	1620	2000	105197274	105196910	1.010000e-104	390.0
11	TraesCS7D01G208000	chr3D	86.944	360	29	6	1641	2000	105175237	105174896	3.630000e-104	388.0
12	TraesCS7D01G208000	chr3D	85.677	384	34	9	1620	2000	105253039	105252674	4.700000e-103	385.0
13	TraesCS7D01G208000	chr3D	85.027	374	38	6	1627	2000	105280455	105280100	6.120000e-97	364.0
14	TraesCS7D01G208000	chr6B	79.043	606	79	32	999	1589	574021486	574020914	3.660000e-99	372.0
15	TraesCS7D01G208000	chr6A	79.242	607	68	37	991	1589	525992603	525992047	1.310000e-98	370.0
16	TraesCS7D01G208000	chr5D	88.448	277	30	2	1627	1902	377280372	377280097	1.730000e-87	333.0
17	TraesCS7D01G208000	chr5D	91.429	140	11	1	997	1136	319254268	319254406	1.100000e-44	191.0
18	TraesCS7D01G208000	chr5B	91.429	140	11	1	997	1136	369485436	369485574	1.100000e-44	191.0
19	TraesCS7D01G208000	chr5B	89.831	118	12	0	1466	1583	369485858	369485975	5.180000e-33	152.0
20	TraesCS7D01G208000	chr5A	90.714	140	12	1	997	1136	414934857	414934719	5.110000e-43	185.0
21	TraesCS7D01G208000	chr5A	89.655	116	12	0	1468	1583	414934424	414934309	6.710000e-32	148.0
22	TraesCS7D01G208000	chr4A	97.980	99	2	0	996	1094	406202732	406202634	3.980000e-39	172.0
23	TraesCS7D01G208000	chr2A	84.034	119	17	2	1467	1584	696316041	696316158	2.450000e-21	113.0
24	TraesCS7D01G208000	chr2A	82.812	128	18	4	1253	1378	100826055	100825930	8.800000e-21	111.0
25	TraesCS7D01G208000	chr2A	79.245	106	19	3	1253	1358	100971516	100971414	1.490000e-08	71.3
26	TraesCS7D01G208000	chr2D	82.812	128	18	4	1253	1378	101872854	101872729	8.800000e-21	111.0
27	TraesCS7D01G208000	chr2D	90.566	53	5	0	1253	1305	101956591	101956539	1.490000e-08	71.3
28	TraesCS7D01G208000	chr2B	82.031	128	19	4	1253	1378	152844327	152844202	4.090000e-19	106.0
29	TraesCS7D01G208000	chr2B	95.455	44	2	0	1253	1296	153126803	153126760	1.490000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G208000	chr7D	165633715	165636717	3002	False	5546.0	5546	100.0000	1	3003	1	chr7D.!!$F1	3002
1	TraesCS7D01G208000	chr7A	167178703	167181872	3169	False	1942.5	3443	91.5890	1	3003	2	chr7A.!!$F1	3002
2	TraesCS7D01G208000	chr7B	128821135	128823795	2660	False	1701.5	2987	89.1855	1	2723	2	chr7B.!!$F2	2722
3	TraesCS7D01G208000	chr6D	383744981	383745569	588	True	398.0	398	79.4450	991	1587	1	chr6D.!!$R1	596
4	TraesCS7D01G208000	chr6B	574020914	574021486	572	True	372.0	372	79.0430	999	1589	1	chr6B.!!$R1	590
5	TraesCS7D01G208000	chr6A	525992047	525992603	556	True	370.0	370	79.2420	991	1589	1	chr6A.!!$R1	598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
411	455	0.940991	GCTTGCCGGCACAAAAAGAG	60.941	55.0	32.95	23.09	0.0	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2299	2404	0.028505	ACCACGTTCGGATCGATACG	59.971	55.0	24.24	24.24	41.75	3.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
126	132	1.137697	AAGGAGAGGGGTGAAACGTT	58.862	50.000	0.00	0.00	38.12	3.99
127	133	1.137697	AGGAGAGGGGTGAAACGTTT	58.862	50.000	14.57	14.57	38.12	3.60
226	232	8.189709	TCATGTCAACTTCGAATCATTTCTAG	57.810	34.615	0.00	0.00	0.00	2.43
227	233	7.819415	TCATGTCAACTTCGAATCATTTCTAGT	59.181	33.333	0.00	0.00	0.00	2.57
228	234	9.087424	CATGTCAACTTCGAATCATTTCTAGTA	57.913	33.333	0.00	0.00	0.00	1.82
229	235	8.689251	TGTCAACTTCGAATCATTTCTAGTAG	57.311	34.615	0.00	0.00	0.00	2.57
230	236	8.304596	TGTCAACTTCGAATCATTTCTAGTAGT	58.695	33.333	0.00	0.00	0.00	2.73
231	237	9.784680	GTCAACTTCGAATCATTTCTAGTAGTA	57.215	33.333	0.00	0.00	0.00	1.82
316	360	4.811557	CCCTAGAATTCTCGTTGACATTCC	59.188	45.833	12.24	0.00	0.00	3.01
320	364	5.316987	AGAATTCTCGTTGACATTCCCTTT	58.683	37.500	0.88	0.00	0.00	3.11
335	379	3.984193	CTTTGGCGGCTCTCCCTGG	62.984	68.421	11.43	0.00	0.00	4.45
364	408	3.628032	GGGAGCTTAATTAAGAGTGGCAC	59.372	47.826	26.00	10.29	35.33	5.01
366	410	4.095036	GGAGCTTAATTAAGAGTGGCACAC	59.905	45.833	26.00	14.26	45.85	3.82
381	425	2.330041	CACGGTGCGTTTTGACCC	59.670	61.111	0.00	0.00	38.32	4.46
388	432	1.962306	GCGTTTTGACCCTGCCGTA	60.962	57.895	0.00	0.00	0.00	4.02
408	452	2.107953	GGCTTGCCGGCACAAAAA	59.892	55.556	32.95	14.05	38.25	1.94
409	453	1.955663	GGCTTGCCGGCACAAAAAG	60.956	57.895	32.95	24.69	38.25	2.27
411	455	0.940991	GCTTGCCGGCACAAAAAGAG	60.941	55.000	32.95	23.09	0.00	2.85
412	456	0.940991	CTTGCCGGCACAAAAAGAGC	60.941	55.000	32.95	0.00	0.00	4.09
414	458	2.903547	GCCGGCACAAAAAGAGCGA	61.904	57.895	24.80	0.00	34.34	4.93
415	459	1.207593	CCGGCACAAAAAGAGCGAG	59.792	57.895	0.00	0.00	34.34	5.03
463	512	3.069289	GCATGGGGCAAAAAGAAAAGAG	58.931	45.455	0.00	0.00	43.97	2.85
464	513	3.244181	GCATGGGGCAAAAAGAAAAGAGA	60.244	43.478	0.00	0.00	43.97	3.10
486	535	7.001099	AGAAATGCAGGATGAAGTTTTGATT	57.999	32.000	0.00	0.00	27.90	2.57
488	537	8.755977	AGAAATGCAGGATGAAGTTTTGATTAT	58.244	29.630	0.00	0.00	27.90	1.28
489	538	9.374838	GAAATGCAGGATGAAGTTTTGATTATT	57.625	29.630	0.00	0.00	27.90	1.40
601	660	3.004106	GGAGCGACGTACATACATACCTT	59.996	47.826	0.00	0.00	0.00	3.50
604	663	4.214971	AGCGACGTACATACATACCTTAGG	59.785	45.833	0.00	0.00	0.00	2.69
651	718	4.833478	AAGGATGAGCAGTGAACATAGT	57.167	40.909	0.00	0.00	0.00	2.12
652	719	4.399004	AGGATGAGCAGTGAACATAGTC	57.601	45.455	0.00	0.00	0.00	2.59
653	720	4.029520	AGGATGAGCAGTGAACATAGTCT	58.970	43.478	0.00	0.00	0.00	3.24
654	721	4.118410	GGATGAGCAGTGAACATAGTCTG	58.882	47.826	0.00	0.00	0.00	3.51
655	722	4.142071	GGATGAGCAGTGAACATAGTCTGA	60.142	45.833	0.00	0.00	0.00	3.27
656	723	4.446994	TGAGCAGTGAACATAGTCTGAG	57.553	45.455	0.00	0.00	0.00	3.35
657	724	4.082125	TGAGCAGTGAACATAGTCTGAGA	58.918	43.478	0.00	0.00	0.00	3.27
658	725	4.082517	TGAGCAGTGAACATAGTCTGAGAC	60.083	45.833	3.98	3.98	0.00	3.36
671	738	1.987704	CTGAGACTCGAGGAGGTGCG	61.988	65.000	18.41	0.00	33.35	5.34
763	830	1.975407	CACACGTACGACCCTCCCT	60.975	63.158	24.41	0.00	0.00	4.20
776	843	1.002792	CTCCCTGCCCTCTCTTCCT	59.997	63.158	0.00	0.00	0.00	3.36
848	919	2.680352	TGACTGACCCTCCTCCGC	60.680	66.667	0.00	0.00	0.00	5.54
866	939	2.072298	CGCCTATAAATGGAGCTCTGC	58.928	52.381	14.64	0.00	0.00	4.26
968	1045	4.101448	CCGGGTCAGAAGGGCAGG	62.101	72.222	0.00	0.00	0.00	4.85
976	1053	4.918201	GAAGGGCAGGGCGATCGG	62.918	72.222	18.30	0.43	0.00	4.18
1214	1295	1.300620	CCGGCTTGACGTTCTCACA	60.301	57.895	0.00	0.00	0.00	3.58
1402	1489	4.382160	GTGTGTAGTGTAGCTCGAGTTTTC	59.618	45.833	15.13	5.81	0.00	2.29
1696	1801	3.672295	CTCCCAGCAAGCGGAGGAC	62.672	68.421	7.79	0.00	41.79	3.85
2051	2156	2.088423	AGACCGATCATAGATCCGCTC	58.912	52.381	1.72	0.00	0.00	5.03
2063	2168	2.579684	ATCCGCTCCTTTCGCCAGTC	62.580	60.000	0.00	0.00	0.00	3.51
2130	2235	3.438781	GCTTCCATGTCGAAATGTTACCA	59.561	43.478	14.47	0.00	0.00	3.25
2145	2250	2.306512	GTTACCACCATACCCACCTGAA	59.693	50.000	0.00	0.00	0.00	3.02
2175	2280	2.478539	GGAACTCGGAAGAAATGCATGC	60.479	50.000	11.82	11.82	41.32	4.06
2176	2281	1.825090	ACTCGGAAGAAATGCATGCA	58.175	45.000	25.04	25.04	41.32	3.96
2177	2282	2.372264	ACTCGGAAGAAATGCATGCAT	58.628	42.857	27.46	27.46	41.32	3.96
2178	2283	2.357009	ACTCGGAAGAAATGCATGCATC	59.643	45.455	32.25	22.06	41.32	3.91
2179	2284	1.331447	TCGGAAGAAATGCATGCATCG	59.669	47.619	32.25	27.30	37.03	3.84
2180	2285	1.484356	GGAAGAAATGCATGCATCGC	58.516	50.000	32.25	25.00	35.31	4.58
2181	2286	1.484356	GAAGAAATGCATGCATCGCC	58.516	50.000	32.25	22.35	35.31	5.54
2182	2287	0.103572	AAGAAATGCATGCATCGCCC	59.896	50.000	32.25	20.10	35.31	6.13
2183	2288	0.754217	AGAAATGCATGCATCGCCCT	60.754	50.000	32.25	21.77	35.31	5.19
2184	2289	0.103572	GAAATGCATGCATCGCCCTT	59.896	50.000	32.25	22.12	35.31	3.95
2185	2290	0.538118	AAATGCATGCATCGCCCTTT	59.462	45.000	32.25	19.67	35.31	3.11
2186	2291	0.179094	AATGCATGCATCGCCCTTTG	60.179	50.000	32.25	0.00	35.31	2.77
2256	2361	7.590279	TCGATAAAGAAAGTGGAAATGGAAAC	58.410	34.615	0.00	0.00	0.00	2.78
2270	2375	4.974989	AAACCCCGACGACCGTGC	62.975	66.667	0.00	0.00	36.31	5.34
2275	2380	4.337060	CCGACGACCGTGCTGTGA	62.337	66.667	0.00	0.00	36.31	3.58
2299	2404	3.984193	ATGCGAGCAAGGCTGGTCC	62.984	63.158	0.57	0.00	45.50	4.46
2583	2716	8.699749	GTTTGTTATGCTCAACCATAAAAAGTC	58.300	33.333	0.00	0.00	38.86	3.01
2631	2771	3.254654	CGGCCGTGCATACAGACG	61.255	66.667	19.50	0.00	35.31	4.18
2653	2793	1.529865	GAACAGTAGCGAAACCACACC	59.470	52.381	0.00	0.00	0.00	4.16
2726	3065	0.106419	AACGGCAAAGGTTCCCTTGA	60.106	50.000	4.57	0.00	43.92	3.02
2727	3066	0.106419	ACGGCAAAGGTTCCCTTGAA	60.106	50.000	4.57	0.00	43.92	2.69
2728	3067	0.313987	CGGCAAAGGTTCCCTTGAAC	59.686	55.000	4.57	0.00	43.92	3.18
2807	3146	1.068588	CACGATATTCTTCGCAGGGGA	59.931	52.381	0.00	0.00	42.82	4.81
2840	3179	2.040544	GTGATCCGTGGCAAGGTGG	61.041	63.158	19.02	4.73	0.00	4.61
2858	3197	1.057275	GGAGGGATTGAGGGGTCTCC	61.057	65.000	0.00	0.00	39.23	3.71
2897	3236	1.889105	GATGGCGACCATGATGCGT	60.889	57.895	14.84	0.00	45.26	5.24
2993	3332	1.539496	GGCTCCAAATCACCGCGTATA	60.539	52.381	4.92	0.00	0.00	1.47

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
126	132	2.311701	CGTCGCCCTTTACGTGCAA	61.312	57.895	0.00	0.00	34.48	4.08
127	133	2.735478	CGTCGCCCTTTACGTGCA	60.735	61.111	0.00	0.00	34.48	4.57
316	360	3.721706	AGGGAGAGCCGCCAAAGG	61.722	66.667	0.00	0.00	33.83	3.11
335	379	6.540551	CACTCTTAATTAAGCTCCCCTCTTTC	59.459	42.308	18.68	0.00	33.40	2.62
364	408	2.184167	AGGGTCAAAACGCACCGTG	61.184	57.895	0.00	0.00	39.99	4.94
366	410	2.637025	CAGGGTCAAAACGCACCG	59.363	61.111	0.00	0.00	40.65	4.94
367	411	2.335011	GCAGGGTCAAAACGCACC	59.665	61.111	0.00	0.00	40.65	5.01
369	413	2.661840	TACGGCAGGGTCAAAACGCA	62.662	55.000	0.00	0.00	40.65	5.24
370	414	1.508808	TTACGGCAGGGTCAAAACGC	61.509	55.000	0.00	0.00	38.57	4.84
432	481	3.129502	CCCCATGCACTGTCGCAG	61.130	66.667	9.92	5.47	46.99	5.18
443	492	4.605640	TCTCTTTTCTTTTTGCCCCATG	57.394	40.909	0.00	0.00	0.00	3.66
455	504	6.008960	ACTTCATCCTGCATTTCTCTTTTCT	58.991	36.000	0.00	0.00	0.00	2.52
458	507	6.661304	AAACTTCATCCTGCATTTCTCTTT	57.339	33.333	0.00	0.00	0.00	2.52
461	510	6.017400	TCAAAACTTCATCCTGCATTTCTC	57.983	37.500	0.00	0.00	0.00	2.87
463	512	8.937634	ATAATCAAAACTTCATCCTGCATTTC	57.062	30.769	0.00	0.00	0.00	2.17
464	513	9.729281	AAATAATCAAAACTTCATCCTGCATTT	57.271	25.926	0.00	0.00	0.00	2.32
499	548	8.946797	AATTCCATATAAGGAGCTAAAAGCAT	57.053	30.769	1.22	0.00	45.56	3.79
601	660	3.839323	TCTCCCAGTAACTGAACCCTA	57.161	47.619	0.00	0.00	32.44	3.53
604	663	4.202326	TGACTTTCTCCCAGTAACTGAACC	60.202	45.833	0.00	0.00	32.44	3.62
651	718	0.678366	GCACCTCCTCGAGTCTCAGA	60.678	60.000	12.31	0.00	0.00	3.27
652	719	1.806568	GCACCTCCTCGAGTCTCAG	59.193	63.158	12.31	1.50	0.00	3.35
653	720	2.041115	CGCACCTCCTCGAGTCTCA	61.041	63.158	12.31	0.00	0.00	3.27
654	721	2.041686	ACGCACCTCCTCGAGTCTC	61.042	63.158	12.31	0.00	0.00	3.36
655	722	2.034376	ACGCACCTCCTCGAGTCT	59.966	61.111	12.31	0.00	0.00	3.24
656	723	2.179517	CACGCACCTCCTCGAGTC	59.820	66.667	12.31	0.00	0.00	3.36
657	724	3.374402	CCACGCACCTCCTCGAGT	61.374	66.667	12.31	0.00	0.00	4.18
658	725	3.374402	ACCACGCACCTCCTCGAG	61.374	66.667	5.13	5.13	0.00	4.04
671	738	2.033194	GCTCCAGTAACGCCACCAC	61.033	63.158	0.00	0.00	0.00	4.16
763	830	2.203983	TGGCAGGAAGAGAGGGCA	60.204	61.111	0.00	0.00	0.00	5.36
848	919	3.072944	GCAGCAGAGCTCCATTTATAGG	58.927	50.000	10.93	0.00	36.40	2.57
866	939	2.672961	TCCAAGTAAGATCGGTGCAG	57.327	50.000	0.00	0.00	0.00	4.41
957	1034	2.203126	GATCGCCCTGCCCTTCTG	60.203	66.667	0.00	0.00	0.00	3.02
983	1060	4.742201	TCTGCTTGCCGACGGAGC	62.742	66.667	20.50	19.11	36.95	4.70
993	1070	1.453379	CTGCCTCCCCATCTGCTTG	60.453	63.158	0.00	0.00	0.00	4.01
994	1071	3.004951	CTGCCTCCCCATCTGCTT	58.995	61.111	0.00	0.00	0.00	3.91
1175	1252	1.979155	CGGGAGCAGAGGACTGACA	60.979	63.158	0.00	0.00	46.03	3.58
1342	1425	2.432456	GCGTGCAGGTCGATGACA	60.432	61.111	8.40	0.00	33.68	3.58
1696	1801	3.966026	GACCGCCTTCACGTCCTCG	62.966	68.421	0.00	0.00	43.34	4.63
1802	1907	3.844090	GGACGAGGAGGAGCAGGC	61.844	72.222	0.00	0.00	0.00	4.85
2051	2156	0.528684	GAGATCGGACTGGCGAAAGG	60.529	60.000	0.00	0.00	0.00	3.11
2063	2168	2.203714	GAGGGGAGGGGAGATCGG	60.204	72.222	0.00	0.00	0.00	4.18
2130	2235	3.397955	AGAAAAGTTCAGGTGGGTATGGT	59.602	43.478	0.00	0.00	0.00	3.55
2145	2250	4.417426	TCTTCCGAGTTCCAAGAAAAGT	57.583	40.909	0.00	0.00	0.00	2.66
2175	2280	2.028130	GCCTGATCAAAGGGCGATG	58.972	57.895	8.56	0.00	37.84	3.84
2176	2281	4.567318	GCCTGATCAAAGGGCGAT	57.433	55.556	8.56	0.00	37.84	4.58
2180	2285	1.397390	GGCATGGCCTGATCAAAGGG	61.397	60.000	8.35	0.00	46.69	3.95
2181	2286	2.121645	GGCATGGCCTGATCAAAGG	58.878	57.895	8.35	0.00	46.69	3.11
2270	2375	0.668401	TGCTCGCATCACAGTCACAG	60.668	55.000	0.00	0.00	0.00	3.66
2271	2376	0.249826	TTGCTCGCATCACAGTCACA	60.250	50.000	0.00	0.00	0.00	3.58
2272	2377	0.441533	CTTGCTCGCATCACAGTCAC	59.558	55.000	0.00	0.00	0.00	3.67
2273	2378	0.671472	CCTTGCTCGCATCACAGTCA	60.671	55.000	0.00	0.00	0.00	3.41
2274	2379	1.975363	GCCTTGCTCGCATCACAGTC	61.975	60.000	0.00	0.00	0.00	3.51
2275	2380	2.037136	GCCTTGCTCGCATCACAGT	61.037	57.895	0.00	0.00	0.00	3.55
2299	2404	0.028505	ACCACGTTCGGATCGATACG	59.971	55.000	24.24	24.24	41.75	3.06
2583	2716	6.842163	AGCAAGGATGTTGTAAAATTAGTCG	58.158	36.000	0.00	0.00	0.00	4.18
2618	2758	1.340465	GTTCGCGTCTGTATGCACG	59.660	57.895	5.77	0.00	37.49	5.34
2631	2771	0.163146	GTGGTTTCGCTACTGTTCGC	59.837	55.000	0.00	0.00	0.00	4.70
2688	2831	0.486879	TTGGACCATTTCCCCTGCTT	59.513	50.000	0.00	0.00	45.17	3.91
2693	2836	1.884075	GCCGTTTGGACCATTTCCCC	61.884	60.000	0.00	0.00	45.17	4.81
2746	3085	0.318699	TCACGAGAGGAACAGCAACG	60.319	55.000	0.00	0.00	0.00	4.10
2790	3129	1.971357	TCCTCCCCTGCGAAGAATATC	59.029	52.381	0.00	0.00	0.00	1.63
2807	3146	2.037772	GGATCACACACTTGTCACTCCT	59.962	50.000	0.00	0.00	31.66	3.69
2840	3179	0.030603	AGGAGACCCCTCAATCCCTC	60.031	60.000	0.00	0.00	43.31	4.30
2858	3197	3.672295	GAGAAGCACCTGGCCCGAG	62.672	68.421	0.00	0.00	46.50	4.63
2859	3198	3.706373	GAGAAGCACCTGGCCCGA	61.706	66.667	0.00	0.00	46.50	5.14
2860	3199	4.785453	GGAGAAGCACCTGGCCCG	62.785	72.222	0.00	0.00	46.50	6.13
2861	3200	3.334054	AGGAGAAGCACCTGGCCC	61.334	66.667	0.00	0.00	46.50	5.80
2897	3236	1.340017	GGCACCAGCTATCCACTGAAA	60.340	52.381	0.00	0.00	41.70	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.