Multiple sequence alignment - TraesCS7D01G207100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G207100 chr7D 100.000 9299 0 0 1 9299 164633045 164642343 0.000000e+00 17173.0
1 TraesCS7D01G207100 chr7D 90.237 676 51 10 8548 9213 475154726 475155396 0.000000e+00 869.0
2 TraesCS7D01G207100 chr7A 96.564 3900 89 32 4678 8540 166327651 166331542 0.000000e+00 6418.0
3 TraesCS7D01G207100 chr7A 92.610 2517 113 35 839 3334 166323840 166326304 0.000000e+00 3550.0
4 TraesCS7D01G207100 chr7A 96.003 1326 37 6 3369 4683 166326303 166327623 0.000000e+00 2141.0
5 TraesCS7D01G207100 chr7A 87.072 526 54 8 1 521 56263771 56264287 4.840000e-162 582.0
6 TraesCS7D01G207100 chr7A 88.571 70 5 2 723 789 166295640 166295709 2.150000e-11 82.4
7 TraesCS7D01G207100 chr7B 95.808 3745 116 16 4678 8388 127018238 127021975 0.000000e+00 6008.0
8 TraesCS7D01G207100 chr7B 93.946 2709 113 23 661 3354 127014313 127016985 0.000000e+00 4047.0
9 TraesCS7D01G207100 chr7B 92.333 1239 49 10 3478 4683 127016985 127018210 0.000000e+00 1720.0
10 TraesCS7D01G207100 chr7B 90.497 684 48 9 8542 9213 380072635 380073313 0.000000e+00 887.0
11 TraesCS7D01G207100 chr7B 93.919 148 8 1 8394 8540 127022028 127022175 1.220000e-53 222.0
12 TraesCS7D01G207100 chr7B 98.246 57 0 1 9241 9296 127022232 127022288 2.140000e-16 99.0
13 TraesCS7D01G207100 chr3D 91.031 669 47 7 8554 9213 24569045 24569709 0.000000e+00 891.0
14 TraesCS7D01G207100 chr3B 90.977 665 46 9 8558 9213 534159004 534159663 0.000000e+00 883.0
15 TraesCS7D01G207100 chr3B 90.308 681 49 9 8545 9213 707027535 707026860 0.000000e+00 876.0
16 TraesCS7D01G207100 chrUn 90.427 679 47 10 8547 9213 136394667 136395339 0.000000e+00 878.0
17 TraesCS7D01G207100 chr6B 90.205 684 50 9 8542 9213 61211511 61212189 0.000000e+00 876.0
18 TraesCS7D01G207100 chr5B 90.308 681 49 8 8545 9213 710236300 710235625 0.000000e+00 876.0
19 TraesCS7D01G207100 chr5B 91.385 325 23 4 3217 3540 394973747 394973427 3.080000e-119 440.0
20 TraesCS7D01G207100 chr5B 91.411 326 21 5 3217 3538 575816152 575815830 3.080000e-119 440.0
21 TraesCS7D01G207100 chr1D 90.583 669 49 8 8554 9213 466406461 466407124 0.000000e+00 874.0
22 TraesCS7D01G207100 chr1D 87.259 675 57 13 1 669 27965035 27965686 0.000000e+00 743.0
23 TraesCS7D01G207100 chr1D 91.641 323 26 1 3218 3540 150941768 150941447 6.620000e-121 446.0
24 TraesCS7D01G207100 chr3A 90.105 667 61 5 1 666 729396860 729396198 0.000000e+00 861.0
25 TraesCS7D01G207100 chr4D 89.614 674 63 5 1 669 19204798 19205469 0.000000e+00 850.0
26 TraesCS7D01G207100 chr2A 86.697 669 68 11 1 666 469198714 469199364 0.000000e+00 723.0
27 TraesCS7D01G207100 chr6D 86.269 670 65 13 1 666 48474754 48474108 0.000000e+00 702.0
28 TraesCS7D01G207100 chr6D 87.237 619 61 14 58 671 126844163 126844768 0.000000e+00 689.0
29 TraesCS7D01G207100 chr5D 88.592 561 61 3 58 616 309674472 309675031 0.000000e+00 678.0
30 TraesCS7D01G207100 chr5D 84.351 524 63 16 1 516 435672034 435672546 6.490000e-136 496.0
31 TraesCS7D01G207100 chr5D 80.254 709 82 41 1 669 435667099 435667789 1.820000e-131 481.0
32 TraesCS7D01G207100 chr4A 85.596 604 76 8 58 657 571253486 571252890 2.850000e-174 623.0
33 TraesCS7D01G207100 chr2D 90.123 405 35 4 237 640 644218486 644218886 1.070000e-143 521.0
34 TraesCS7D01G207100 chr1A 92.260 323 24 1 3218 3540 208893886 208894207 3.060000e-124 457.0
35 TraesCS7D01G207100 chr1A 91.489 329 18 6 3218 3539 292774086 292773761 2.380000e-120 444.0
36 TraesCS7D01G207100 chr2B 92.260 323 22 3 3218 3538 367687796 367688117 1.100000e-123 455.0
37 TraesCS7D01G207100 chr5A 91.641 323 23 3 3218 3538 287614330 287614010 2.380000e-120 444.0
38 TraesCS7D01G207100 chr4B 91.562 320 25 2 3217 3535 607282409 607282727 3.080000e-119 440.0
39 TraesCS7D01G207100 chr6A 78.763 598 104 18 58 650 336838314 336838893 6.810000e-101 379.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G207100 chr7D 164633045 164642343 9298 False 17173.000000 17173 100.0000 1 9299 1 chr7D.!!$F1 9298
1 TraesCS7D01G207100 chr7D 475154726 475155396 670 False 869.000000 869 90.2370 8548 9213 1 chr7D.!!$F2 665
2 TraesCS7D01G207100 chr7A 166323840 166331542 7702 False 4036.333333 6418 95.0590 839 8540 3 chr7A.!!$F3 7701
3 TraesCS7D01G207100 chr7A 56263771 56264287 516 False 582.000000 582 87.0720 1 521 1 chr7A.!!$F1 520
4 TraesCS7D01G207100 chr7B 127014313 127022288 7975 False 2419.200000 6008 94.8504 661 9296 5 chr7B.!!$F2 8635
5 TraesCS7D01G207100 chr7B 380072635 380073313 678 False 887.000000 887 90.4970 8542 9213 1 chr7B.!!$F1 671
6 TraesCS7D01G207100 chr3D 24569045 24569709 664 False 891.000000 891 91.0310 8554 9213 1 chr3D.!!$F1 659
7 TraesCS7D01G207100 chr3B 534159004 534159663 659 False 883.000000 883 90.9770 8558 9213 1 chr3B.!!$F1 655
8 TraesCS7D01G207100 chr3B 707026860 707027535 675 True 876.000000 876 90.3080 8545 9213 1 chr3B.!!$R1 668
9 TraesCS7D01G207100 chrUn 136394667 136395339 672 False 878.000000 878 90.4270 8547 9213 1 chrUn.!!$F1 666
10 TraesCS7D01G207100 chr6B 61211511 61212189 678 False 876.000000 876 90.2050 8542 9213 1 chr6B.!!$F1 671
11 TraesCS7D01G207100 chr5B 710235625 710236300 675 True 876.000000 876 90.3080 8545 9213 1 chr5B.!!$R3 668
12 TraesCS7D01G207100 chr1D 466406461 466407124 663 False 874.000000 874 90.5830 8554 9213 1 chr1D.!!$F2 659
13 TraesCS7D01G207100 chr1D 27965035 27965686 651 False 743.000000 743 87.2590 1 669 1 chr1D.!!$F1 668
14 TraesCS7D01G207100 chr3A 729396198 729396860 662 True 861.000000 861 90.1050 1 666 1 chr3A.!!$R1 665
15 TraesCS7D01G207100 chr4D 19204798 19205469 671 False 850.000000 850 89.6140 1 669 1 chr4D.!!$F1 668
16 TraesCS7D01G207100 chr2A 469198714 469199364 650 False 723.000000 723 86.6970 1 666 1 chr2A.!!$F1 665
17 TraesCS7D01G207100 chr6D 48474108 48474754 646 True 702.000000 702 86.2690 1 666 1 chr6D.!!$R1 665
18 TraesCS7D01G207100 chr6D 126844163 126844768 605 False 689.000000 689 87.2370 58 671 1 chr6D.!!$F1 613
19 TraesCS7D01G207100 chr5D 309674472 309675031 559 False 678.000000 678 88.5920 58 616 1 chr5D.!!$F1 558
20 TraesCS7D01G207100 chr5D 435672034 435672546 512 False 496.000000 496 84.3510 1 516 1 chr5D.!!$F3 515
21 TraesCS7D01G207100 chr5D 435667099 435667789 690 False 481.000000 481 80.2540 1 669 1 chr5D.!!$F2 668
22 TraesCS7D01G207100 chr4A 571252890 571253486 596 True 623.000000 623 85.5960 58 657 1 chr4A.!!$R1 599
23 TraesCS7D01G207100 chr6A 336838314 336838893 579 False 379.000000 379 78.7630 58 650 1 chr6A.!!$F1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 837 0.611200 TGATCGGTTGTACTGGTGGG 59.389 55.000 0.00 0.00 0.00 4.61 F
845 984 1.521234 GCTGACTGAGCCTAGCAGC 60.521 63.158 13.91 13.91 42.54 5.25 F
1732 1890 0.179073 CCCTGTGATACCTGCTTCCG 60.179 60.000 0.00 0.00 0.00 4.30 F
3275 3440 0.106918 AGTTCGGACTTTGGGTTGCA 60.107 50.000 0.00 0.00 29.87 4.08 F
3695 3860 0.623723 TCCTTAATCCTGGCCACCAC 59.376 55.000 0.00 0.00 0.00 4.16 F
3986 4159 1.003118 CCACAGCTAGGTGTTTAGGCA 59.997 52.381 24.50 0.00 37.06 4.75 F
3994 4167 2.539302 AGGTGTTTAGGCATGCCAAAT 58.461 42.857 37.18 20.37 38.92 2.32 F
5960 6245 2.361104 TGGAAGGCACGGCAATCC 60.361 61.111 8.07 8.07 36.04 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 1890 0.602562 TGTAACCAAAGCTGCATGGC 59.397 50.000 20.27 8.42 40.51 4.40 R
2004 2162 1.269569 ACGAGACAATGCACGAACAGA 60.270 47.619 0.00 0.00 0.00 3.41 R
3622 3787 0.174617 GGACTGAGAGTGCTACTGCC 59.825 60.000 0.00 0.00 38.71 4.85 R
4968 5246 2.214376 TAACCATGACCCTTTGCTGG 57.786 50.000 0.00 0.00 0.00 4.85 R
5537 5822 6.152661 GGTCCTGAAATGGAATAAACATGTCA 59.847 38.462 0.00 0.00 39.58 3.58 R
5960 6245 2.084610 TGAAGCACTTCAGATGGTCG 57.915 50.000 8.99 0.00 43.90 4.79 R
6695 6981 3.795688 ATGTCAGGGTGTGTGAGAAAT 57.204 42.857 0.00 0.00 0.00 2.17 R
8545 8904 0.107165 GGCAGGAGCGAAGGGTTATT 60.107 55.000 0.00 0.00 43.41 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 2.435059 GCTGTGAAGACGGAGCCC 60.435 66.667 0.00 0.00 0.00 5.19
358 427 1.203013 TCAAGGAGGAGAAGGACGACA 60.203 52.381 0.00 0.00 0.00 4.35
640 775 1.429423 GCGATTTTTCGAGCCCCTG 59.571 57.895 0.00 0.00 34.64 4.45
641 776 1.429423 CGATTTTTCGAGCCCCTGC 59.571 57.895 0.00 0.00 34.64 4.85
691 829 5.009310 AGCATACGTAGATTGATCGGTTGTA 59.991 40.000 0.08 0.00 0.00 2.41
693 831 4.978083 ACGTAGATTGATCGGTTGTACT 57.022 40.909 0.00 0.00 0.00 2.73
694 832 4.669318 ACGTAGATTGATCGGTTGTACTG 58.331 43.478 0.00 0.00 0.00 2.74
695 833 4.042398 CGTAGATTGATCGGTTGTACTGG 58.958 47.826 0.00 0.00 0.00 4.00
696 834 4.439700 CGTAGATTGATCGGTTGTACTGGT 60.440 45.833 0.00 0.00 0.00 4.00
697 835 3.861840 AGATTGATCGGTTGTACTGGTG 58.138 45.455 0.00 0.00 0.00 4.17
698 836 2.465860 TTGATCGGTTGTACTGGTGG 57.534 50.000 0.00 0.00 0.00 4.61
699 837 0.611200 TGATCGGTTGTACTGGTGGG 59.389 55.000 0.00 0.00 0.00 4.61
778 917 3.001736 GTGACACTTGAGAGCAACACTTC 59.998 47.826 0.00 0.00 0.00 3.01
810 949 5.175127 AGCGTTTGTTTTCCACAATTTCTT 58.825 33.333 0.00 0.00 45.17 2.52
811 950 5.290885 AGCGTTTGTTTTCCACAATTTCTTC 59.709 36.000 0.00 0.00 45.17 2.87
813 952 6.183360 GCGTTTGTTTTCCACAATTTCTTCTT 60.183 34.615 0.00 0.00 45.17 2.52
814 953 7.623297 GCGTTTGTTTTCCACAATTTCTTCTTT 60.623 33.333 0.00 0.00 45.17 2.52
818 957 9.500785 TTGTTTTCCACAATTTCTTCTTTTTCT 57.499 25.926 0.00 0.00 40.71 2.52
819 958 9.500785 TGTTTTCCACAATTTCTTCTTTTTCTT 57.499 25.926 0.00 0.00 29.87 2.52
820 959 9.759259 GTTTTCCACAATTTCTTCTTTTTCTTG 57.241 29.630 0.00 0.00 0.00 3.02
832 971 7.920738 TCTTCTTTTTCTTGTTTAGAGCTGAC 58.079 34.615 0.00 0.00 33.51 3.51
835 974 7.047891 TCTTTTTCTTGTTTAGAGCTGACTGA 58.952 34.615 0.00 0.00 33.51 3.41
845 984 1.521234 GCTGACTGAGCCTAGCAGC 60.521 63.158 13.91 13.91 42.54 5.25
913 1052 1.561643 TTCAGCCCACGAGAATCTCT 58.438 50.000 8.77 0.00 0.00 3.10
934 1073 3.399330 TCTTTTTAGAACAGCCCACGAG 58.601 45.455 0.00 0.00 0.00 4.18
955 1094 4.045103 GGATCTCCAGACGGAAAACGGA 62.045 54.545 0.00 0.00 42.21 4.69
988 1136 3.377656 CCACTAGTGGGAGCACGT 58.622 61.111 31.15 0.00 46.81 4.49
997 1145 2.181777 GGAGCACGTCTCGCATCA 59.818 61.111 0.00 0.00 42.82 3.07
1029 1177 2.472909 CGCATTTCGCCTTCCCTCC 61.473 63.158 0.00 0.00 37.30 4.30
1032 1180 1.619669 ATTTCGCCTTCCCTCCCCT 60.620 57.895 0.00 0.00 0.00 4.79
1046 1195 3.452264 CCCTCCCCTCAAATTCAAAATCC 59.548 47.826 0.00 0.00 0.00 3.01
1048 1197 3.449918 TCCCCTCAAATTCAAAATCCCC 58.550 45.455 0.00 0.00 0.00 4.81
1049 1198 3.180507 CCCCTCAAATTCAAAATCCCCA 58.819 45.455 0.00 0.00 0.00 4.96
1257 1412 2.203938 TTCCTCCCGGCCTTCTGT 60.204 61.111 0.00 0.00 0.00 3.41
1572 1730 9.476202 GTTTTGCCTAACTTCAGTTTTCATTAT 57.524 29.630 0.00 0.00 39.31 1.28
1604 1762 3.181506 GGAGCTTGTATAGTTGCTGTTGC 60.182 47.826 0.00 0.00 35.76 4.17
1697 1855 8.124199 TCAATTTAGTTCCAGTGTAAAACGTTC 58.876 33.333 0.00 0.00 0.00 3.95
1732 1890 0.179073 CCCTGTGATACCTGCTTCCG 60.179 60.000 0.00 0.00 0.00 4.30
1758 1916 3.253188 TGCAGCTTTGGTTACAGTGAATC 59.747 43.478 0.00 0.00 0.00 2.52
1796 1954 3.181535 GCGTTTTAATTTGCCGGTGAATG 60.182 43.478 1.90 0.00 0.00 2.67
1807 1965 2.284417 GCCGGTGAATGAGAACGTAATC 59.716 50.000 1.90 0.00 0.00 1.75
1832 1990 6.769512 TGAGCAATTCTTAGTTCAGGTAGTT 58.230 36.000 0.00 0.00 0.00 2.24
1850 2008 3.378339 AGTTTCAAGACTACCACGTTCG 58.622 45.455 0.00 0.00 0.00 3.95
1971 2129 3.280197 TTGATGCCATGAAGATTCGGA 57.720 42.857 0.00 0.00 0.00 4.55
2004 2162 3.140325 TCCCTGCAATTCGAGTTTTCT 57.860 42.857 0.00 0.00 0.00 2.52
2123 2281 4.220821 TGTCAGATCAACTCAGTACCCTTC 59.779 45.833 0.00 0.00 0.00 3.46
2168 2326 6.767902 TGTTATTACATCTGATGGAGGCTTTC 59.232 38.462 20.83 5.99 33.60 2.62
2339 2497 5.385198 TCCAAAGTCTTAGGTGAGCAATTT 58.615 37.500 0.00 0.00 0.00 1.82
2401 2564 1.917872 ATGCACAACCGGTTACCAAT 58.082 45.000 21.79 9.14 0.00 3.16
2422 2585 6.375174 CCAATACCAAGTGAGTGAATTGATGA 59.625 38.462 0.00 0.00 29.85 2.92
2563 2726 3.613030 CATTGTGGTGGAGATGTCATCA 58.387 45.455 15.20 0.00 0.00 3.07
2565 2728 1.066929 TGTGGTGGAGATGTCATCACG 60.067 52.381 15.20 0.00 46.13 4.35
2793 2956 5.108385 TGAAAACTGAATTTCCGAGAAGC 57.892 39.130 0.00 0.00 38.30 3.86
2883 3046 5.366829 ACCAACGGCTAAACTGTATTTTC 57.633 39.130 0.00 0.00 36.64 2.29
2923 3087 7.262772 ACTTTCTAGTACAGCGTGCATATAAA 58.737 34.615 0.00 0.00 31.21 1.40
2928 3092 9.353999 TCTAGTACAGCGTGCATATAAATTATG 57.646 33.333 0.00 0.00 0.00 1.90
2930 3094 8.601845 AGTACAGCGTGCATATAAATTATGAA 57.398 30.769 0.00 0.00 0.00 2.57
2956 3120 9.308000 AGTTCATAAAGTTTGTCATTTCCCATA 57.692 29.630 0.00 0.00 0.00 2.74
3106 3270 2.182827 AGCTCAGGTAAGCATCAGTCA 58.817 47.619 0.00 0.00 45.00 3.41
3167 3331 0.694771 ATGGCACTCCTGCAAGAAGA 59.305 50.000 0.00 0.00 46.28 2.87
3169 3333 1.093159 GGCACTCCTGCAAGAAGATG 58.907 55.000 0.00 0.00 46.28 2.90
3198 3362 6.972941 TGCATGTTTATTTTCGCGATAAAAC 58.027 32.000 15.79 18.49 32.50 2.43
3261 3426 2.555199 CTAGCCCTTTCCATCAGTTCG 58.445 52.381 0.00 0.00 0.00 3.95
3268 3433 3.189287 CCTTTCCATCAGTTCGGACTTTG 59.811 47.826 0.00 0.00 32.54 2.77
3275 3440 0.106918 AGTTCGGACTTTGGGTTGCA 60.107 50.000 0.00 0.00 29.87 4.08
3314 3479 0.762418 TAACATGGTATCAGGGCCCG 59.238 55.000 18.44 12.05 0.00 6.13
3326 3491 0.971447 AGGGCCCGTAGTCTTGAGTC 60.971 60.000 18.44 0.00 0.00 3.36
3341 3506 1.072331 TGAGTCCAAGTCCTGGCTTTC 59.928 52.381 1.37 0.00 45.98 2.62
3353 3518 2.426738 CCTGGCTTTCGCAATTTATCCA 59.573 45.455 0.00 0.00 38.10 3.41
3354 3519 3.119173 CCTGGCTTTCGCAATTTATCCAA 60.119 43.478 0.00 0.00 38.10 3.53
3355 3520 4.493547 CTGGCTTTCGCAATTTATCCAAA 58.506 39.130 0.00 0.00 38.10 3.28
3356 3521 4.887748 TGGCTTTCGCAATTTATCCAAAA 58.112 34.783 0.00 0.00 38.10 2.44
3357 3522 5.300752 TGGCTTTCGCAATTTATCCAAAAA 58.699 33.333 0.00 0.00 38.10 1.94
3358 3523 5.936956 TGGCTTTCGCAATTTATCCAAAAAT 59.063 32.000 0.00 0.00 38.10 1.82
3359 3524 6.429385 TGGCTTTCGCAATTTATCCAAAAATT 59.571 30.769 0.00 0.00 39.14 1.82
3367 3532 5.806366 ATTTATCCAAAAATTGCTGCTGC 57.194 34.783 8.89 8.89 40.20 5.25
3371 3536 0.956902 CAAAAATTGCTGCTGCCCCC 60.957 55.000 13.47 0.00 38.71 5.40
3434 3599 4.281182 AGTCTATTCACGTGTTGACTTCCT 59.719 41.667 16.51 0.85 32.26 3.36
3436 3601 1.295792 TTCACGTGTTGACTTCCTGC 58.704 50.000 16.51 0.00 32.26 4.85
3444 3609 0.874175 TTGACTTCCTGCGTCACACG 60.874 55.000 0.00 0.00 45.88 4.49
3684 3849 5.344884 CAGAGTCTCGTTTCCTCCTTAATC 58.655 45.833 0.00 0.00 0.00 1.75
3695 3860 0.623723 TCCTTAATCCTGGCCACCAC 59.376 55.000 0.00 0.00 0.00 4.16
3724 3897 2.831526 ACCATTGTGCCATACTTTTCCC 59.168 45.455 0.00 0.00 0.00 3.97
3797 3970 3.780902 CAAAGAGTTCGGCAAAGGTTTT 58.219 40.909 0.00 0.00 0.00 2.43
3816 3989 2.949177 TGTTGCAACCATGTACCTCT 57.051 45.000 26.14 0.00 0.00 3.69
3986 4159 1.003118 CCACAGCTAGGTGTTTAGGCA 59.997 52.381 24.50 0.00 37.06 4.75
3994 4167 2.539302 AGGTGTTTAGGCATGCCAAAT 58.461 42.857 37.18 20.37 38.92 2.32
4002 4175 3.598019 AGGCATGCCAAATTTACTGTG 57.402 42.857 37.18 0.00 38.92 3.66
4024 4197 5.353400 GTGGTGAACTAAATAGCCCTGTTAC 59.647 44.000 0.00 0.00 0.00 2.50
4028 4201 4.813750 ACTAAATAGCCCTGTTACGTGT 57.186 40.909 0.00 0.00 0.00 4.49
4162 4335 5.565592 TCATTGCAAATATCAGTGGTGTC 57.434 39.130 1.71 0.00 0.00 3.67
5536 5821 9.820725 TTTTCTCACATGTGAAAATTGATTTCT 57.179 25.926 27.63 0.00 46.27 2.52
5537 5822 9.820725 TTTCTCACATGTGAAAATTGATTTCTT 57.179 25.926 27.63 0.00 46.27 2.52
5538 5823 8.806177 TCTCACATGTGAAAATTGATTTCTTG 57.194 30.769 27.63 11.93 46.27 3.02
5541 5826 8.196103 TCACATGTGAAAATTGATTTCTTGACA 58.804 29.630 26.02 0.00 46.27 3.58
5960 6245 2.361104 TGGAAGGCACGGCAATCC 60.361 61.111 8.07 8.07 36.04 3.01
6714 7000 4.102524 AGTTATTTCTCACACACCCTGACA 59.897 41.667 0.00 0.00 0.00 3.58
6837 7123 8.522830 TGTTCATGTTTTCCAGGATATTCTTTC 58.477 33.333 0.00 0.00 33.16 2.62
6838 7124 8.522830 GTTCATGTTTTCCAGGATATTCTTTCA 58.477 33.333 0.00 0.00 33.16 2.69
7139 7427 1.130054 TCAGTGAGGAAGGGCTTGCT 61.130 55.000 0.00 0.00 44.06 3.91
7431 7720 2.221981 GCTTCTAAGATTCCGGCAATCG 59.778 50.000 16.12 7.08 45.20 3.34
7608 7897 2.598637 CGATGCCATATTCGGTATGTCG 59.401 50.000 7.60 6.81 38.83 4.35
8053 8344 0.747255 CTGATGATTCCGACGACCCT 59.253 55.000 0.00 0.00 0.00 4.34
8063 8354 2.361357 ACGACCCTGACGAGGAGG 60.361 66.667 0.00 0.00 42.93 4.30
8064 8355 2.045242 CGACCCTGACGAGGAGGA 60.045 66.667 0.00 0.00 42.93 3.71
8198 8490 9.685276 TTTTGAACCAGTAGATCATGTATTCAT 57.315 29.630 0.00 0.00 34.21 2.57
8242 8534 7.553334 AGCTGCAAAGATTATGATTTGATTGT 58.447 30.769 1.02 0.00 38.42 2.71
8245 8538 8.468720 TGCAAAGATTATGATTTGATTGTGTG 57.531 30.769 2.04 0.00 38.42 3.82
8329 8623 6.255453 GCTCTTTTGCACTATTGTTTGTCAAA 59.745 34.615 0.00 0.00 39.62 2.69
8401 8759 3.408634 ACAAGAACACCTTATCCAACCG 58.591 45.455 0.00 0.00 32.86 4.44
8428 8786 2.648059 AGGCCATAAACATGTCAGCTC 58.352 47.619 5.01 0.00 0.00 4.09
8434 8792 4.271049 CCATAAACATGTCAGCTCTTACCG 59.729 45.833 0.00 0.00 0.00 4.02
8460 8819 1.600916 GCTTCCAAACAGCTCCGGT 60.601 57.895 0.00 0.00 34.15 5.28
8542 8901 2.144362 GCAAAATGTGCGTCAAGCC 58.856 52.632 0.00 0.00 45.10 4.35
8543 8902 0.318955 GCAAAATGTGCGTCAAGCCT 60.319 50.000 0.00 0.00 45.10 4.58
8544 8903 2.516700 GCAAAATGTGCGTCAAGCCTG 61.517 52.381 0.00 0.00 45.10 4.85
8545 8904 4.772492 GCAAAATGTGCGTCAAGCCTGA 62.772 50.000 0.00 0.00 45.10 3.86
8552 8911 0.733150 GCGTCAAGCCTGAATAACCC 59.267 55.000 0.00 0.00 40.81 4.11
8604 8969 3.292159 GGTTTCTTTGCCGCCGGT 61.292 61.111 4.45 0.00 0.00 5.28
8666 9031 3.492353 CATGGTGGATCCCGGCCT 61.492 66.667 9.90 0.00 34.77 5.19
8671 9036 3.338250 TGGATCCCGGCCTTTGCT 61.338 61.111 9.90 0.00 37.74 3.91
8696 9061 3.832615 GGAGGGCTCCGTTTTTAGATA 57.167 47.619 0.00 0.00 40.36 1.98
8702 9067 6.008331 AGGGCTCCGTTTTTAGATACTTTTT 58.992 36.000 0.00 0.00 0.00 1.94
8876 9244 1.757682 TCCAGTTGGCGTTTGTCTTT 58.242 45.000 0.00 0.00 34.44 2.52
8915 9283 1.398960 CGGTCTTCGTTCGTCTACGTT 60.399 52.381 0.00 0.00 42.01 3.99
8945 9313 0.328258 CAGGTTGGATCCTTCCGGTT 59.672 55.000 14.23 0.00 45.89 4.44
8947 9315 1.173913 GGTTGGATCCTTCCGGTTTG 58.826 55.000 14.23 0.00 45.89 2.93
8968 9336 1.153568 CTTCTCTTCATCGGCGGCA 60.154 57.895 10.53 0.00 0.00 5.69
8973 9341 2.031919 TTCATCGGCGGCAGTTGT 59.968 55.556 10.53 0.00 0.00 3.32
8997 9365 1.960040 CTGGTGCGCTGGTCCTATGA 61.960 60.000 9.73 0.00 0.00 2.15
8998 9366 1.337384 TGGTGCGCTGGTCCTATGAT 61.337 55.000 9.73 0.00 0.00 2.45
9000 9368 0.882042 GTGCGCTGGTCCTATGATGG 60.882 60.000 9.73 0.00 0.00 3.51
9001 9369 1.302033 GCGCTGGTCCTATGATGGG 60.302 63.158 0.00 0.00 0.00 4.00
9002 9370 1.372683 CGCTGGTCCTATGATGGGG 59.627 63.158 0.00 0.00 0.00 4.96
9004 9372 0.398318 GCTGGTCCTATGATGGGGTC 59.602 60.000 0.00 0.00 0.00 4.46
9005 9373 2.042301 GCTGGTCCTATGATGGGGTCT 61.042 57.143 0.00 0.00 0.00 3.85
9006 9374 2.412591 CTGGTCCTATGATGGGGTCTT 58.587 52.381 0.00 0.00 0.00 3.01
9007 9375 3.587498 CTGGTCCTATGATGGGGTCTTA 58.413 50.000 0.00 0.00 0.00 2.10
9008 9376 3.580458 CTGGTCCTATGATGGGGTCTTAG 59.420 52.174 0.00 0.00 35.43 2.18
9033 9401 1.130749 CGACTTCCCGACTGTCTACTG 59.869 57.143 6.21 0.00 0.00 2.74
9055 9423 2.117206 AATGTTTGCCCGGCTCCA 59.883 55.556 11.61 4.86 0.00 3.86
9108 9476 0.801251 GGCTTGCTCTAGTGCTTGTG 59.199 55.000 17.08 6.48 0.00 3.33
9116 9484 0.039437 CTAGTGCTTGTGGTCGTCGT 60.039 55.000 0.00 0.00 0.00 4.34
9206 9574 6.203808 TGAATAGATCGGAAGTTTTCTCGA 57.796 37.500 0.00 0.00 37.00 4.04
9233 9601 8.452989 AAAAAGTTGATCTATGCAATTTCGTC 57.547 30.769 0.00 0.00 0.00 4.20
9296 9693 5.009610 CGCCAATACCTACTGCCAATAATTT 59.990 40.000 0.00 0.00 0.00 1.82
9297 9694 6.447162 GCCAATACCTACTGCCAATAATTTC 58.553 40.000 0.00 0.00 0.00 2.17
9298 9695 6.265422 GCCAATACCTACTGCCAATAATTTCT 59.735 38.462 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.175240 CGTCTTCACAGCGGCGAG 61.175 66.667 12.98 4.29 0.00 5.03
47 48 4.717629 CCGTCTTCACAGCGGCGA 62.718 66.667 12.98 0.00 38.99 5.54
48 49 4.717629 TCCGTCTTCACAGCGGCG 62.718 66.667 0.51 0.51 44.58 6.46
49 50 2.811317 CTCCGTCTTCACAGCGGC 60.811 66.667 0.00 0.00 44.58 6.53
50 51 2.811317 GCTCCGTCTTCACAGCGG 60.811 66.667 0.00 0.00 46.12 5.52
51 52 2.811317 GGCTCCGTCTTCACAGCG 60.811 66.667 0.00 0.00 32.26 5.18
52 53 2.435059 GGGCTCCGTCTTCACAGC 60.435 66.667 0.00 0.00 0.00 4.40
53 54 2.125912 CGGGCTCCGTCTTCACAG 60.126 66.667 5.56 0.00 42.73 3.66
54 55 3.691342 CCGGGCTCCGTCTTCACA 61.691 66.667 11.85 0.00 46.80 3.58
55 56 4.452733 CCCGGGCTCCGTCTTCAC 62.453 72.222 8.08 0.00 46.80 3.18
80 114 4.069232 CTGGCTCCGGCTTCACGA 62.069 66.667 0.00 0.00 38.73 4.35
250 313 1.750351 CTGTCGTCGTCGAGAACAAA 58.250 50.000 4.68 0.00 46.96 2.83
358 427 2.746277 GCCATCGCCGTTGTCCTT 60.746 61.111 0.00 0.00 0.00 3.36
377 451 3.932289 CGAAGTCGCCGAACTTGT 58.068 55.556 6.66 0.00 39.55 3.16
408 487 3.637769 AGCCCTAGACTACAGGAAGAAG 58.362 50.000 0.00 0.00 34.91 2.85
618 753 2.478746 GCTCGAAAAATCGCCGCA 59.521 55.556 7.22 0.00 32.51 5.69
691 829 2.777960 ATTGCCACCACCCACCAGT 61.778 57.895 0.00 0.00 0.00 4.00
693 831 2.203611 CATTGCCACCACCCACCA 60.204 61.111 0.00 0.00 0.00 4.17
694 832 2.996734 CCATTGCCACCACCCACC 60.997 66.667 0.00 0.00 0.00 4.61
695 833 3.694538 GCCATTGCCACCACCCAC 61.695 66.667 0.00 0.00 0.00 4.61
696 834 2.160406 TATGCCATTGCCACCACCCA 62.160 55.000 0.00 0.00 36.33 4.51
697 835 1.381056 TATGCCATTGCCACCACCC 60.381 57.895 0.00 0.00 36.33 4.61
698 836 2.019897 GCTATGCCATTGCCACCACC 62.020 60.000 0.00 0.00 36.33 4.61
699 837 1.438814 GCTATGCCATTGCCACCAC 59.561 57.895 0.00 0.00 36.33 4.16
719 857 2.432444 CGGCAGTACTTTCATTCCCAA 58.568 47.619 0.00 0.00 0.00 4.12
721 859 1.065709 TCCGGCAGTACTTTCATTCCC 60.066 52.381 0.00 0.00 0.00 3.97
723 861 1.666189 GCTCCGGCAGTACTTTCATTC 59.334 52.381 0.00 0.00 38.54 2.67
724 862 1.003118 TGCTCCGGCAGTACTTTCATT 59.997 47.619 0.00 0.00 44.28 2.57
790 929 9.891828 AAAAAGAAGAAATTGTGGAAAACAAAC 57.108 25.926 0.00 0.00 44.97 2.93
810 949 7.047891 TCAGTCAGCTCTAAACAAGAAAAAGA 58.952 34.615 0.00 0.00 32.46 2.52
811 950 7.251704 TCAGTCAGCTCTAAACAAGAAAAAG 57.748 36.000 0.00 0.00 32.46 2.27
813 952 5.237344 GCTCAGTCAGCTCTAAACAAGAAAA 59.763 40.000 0.00 0.00 45.83 2.29
814 953 4.752101 GCTCAGTCAGCTCTAAACAAGAAA 59.248 41.667 0.00 0.00 45.83 2.52
869 1008 4.809496 AAGGCTGGCGGATGGCTG 62.809 66.667 0.00 0.00 42.94 4.85
913 1052 3.399330 CTCGTGGGCTGTTCTAAAAAGA 58.601 45.455 0.00 0.00 0.00 2.52
988 1136 2.498941 GGATCCGGGTGATGCGAGA 61.499 63.158 0.00 0.00 31.74 4.04
1029 1177 3.055167 GGTGGGGATTTTGAATTTGAGGG 60.055 47.826 0.00 0.00 0.00 4.30
1032 1180 2.909662 GGGGTGGGGATTTTGAATTTGA 59.090 45.455 0.00 0.00 0.00 2.69
1332 1487 4.516195 GCGGAGGAGGAGGCGAAC 62.516 72.222 0.00 0.00 0.00 3.95
1521 1679 5.998454 AATCACGCATCTAGAGGAAAATG 57.002 39.130 8.95 0.00 0.00 2.32
1572 1730 7.926555 GCAACTATACAAGCTCCTCAAATACTA 59.073 37.037 0.00 0.00 0.00 1.82
1604 1762 4.915085 GGAACACATCATTAACCACGTTTG 59.085 41.667 0.00 0.00 0.00 2.93
1697 1855 9.172820 GTATCACAGGGTTTTTAACTTTTAACG 57.827 33.333 0.00 0.00 0.00 3.18
1732 1890 0.602562 TGTAACCAAAGCTGCATGGC 59.397 50.000 20.27 8.42 40.51 4.40
1758 1916 3.747099 AACGCAGAAAGAAATGGATCG 57.253 42.857 0.00 0.00 0.00 3.69
1796 1954 6.654793 AAGAATTGCTCAGATTACGTTCTC 57.345 37.500 0.00 0.00 0.00 2.87
1807 1965 6.402222 ACTACCTGAACTAAGAATTGCTCAG 58.598 40.000 0.00 0.00 32.51 3.35
1832 1990 1.603678 GGCGAACGTGGTAGTCTTGAA 60.604 52.381 0.00 0.00 0.00 2.69
1850 2008 9.774742 CAATGTCAGAAAGTAAGTAATTTAGGC 57.225 33.333 0.00 0.00 0.00 3.93
2004 2162 1.269569 ACGAGACAATGCACGAACAGA 60.270 47.619 0.00 0.00 0.00 3.41
2137 2295 7.227512 CCTCCATCAGATGTAATAACAAGGAAC 59.772 40.741 9.64 0.00 39.58 3.62
2168 2326 3.189287 CGGACCTCCTTCACAAATCAAAG 59.811 47.826 0.00 0.00 0.00 2.77
2339 2497 3.547746 ACTGGCTTTTCTACGTGGAAAA 58.452 40.909 30.12 30.12 41.17 2.29
2401 2564 8.408043 AAAATCATCAATTCACTCACTTGGTA 57.592 30.769 0.00 0.00 0.00 3.25
2422 2585 5.467735 GCTTGATGCTGAACCAAAAGAAAAT 59.532 36.000 0.00 0.00 38.95 1.82
2563 2726 2.910688 TCAAGAAACCTGAGAAGCGT 57.089 45.000 0.00 0.00 0.00 5.07
2565 2728 3.124297 CGACATCAAGAAACCTGAGAAGC 59.876 47.826 0.00 0.00 0.00 3.86
2793 2956 2.063266 GCAACTGCAACCACATGATTG 58.937 47.619 0.00 2.14 41.59 2.67
2896 3059 1.912110 GCACGCTGTACTAGAAAGTCG 59.088 52.381 0.00 2.28 37.15 4.18
2928 3092 8.141268 TGGGAAATGACAAACTTTATGAACTTC 58.859 33.333 0.00 0.00 0.00 3.01
2930 3094 7.595819 TGGGAAATGACAAACTTTATGAACT 57.404 32.000 0.00 0.00 0.00 3.01
3106 3270 4.220382 TGTGGTGCATAGCAAAGCTAAAAT 59.780 37.500 2.52 0.00 44.62 1.82
3167 3331 4.175516 CGAAAATAAACATGCAGCACCAT 58.824 39.130 0.00 0.00 0.00 3.55
3169 3333 2.345341 GCGAAAATAAACATGCAGCACC 59.655 45.455 0.00 0.00 0.00 5.01
3261 3426 0.320683 GCCAATGCAACCCAAAGTCC 60.321 55.000 0.00 0.00 37.47 3.85
3268 3433 1.512694 GCACTAGCCAATGCAACCC 59.487 57.895 0.00 0.00 41.65 4.11
3275 3440 2.431954 AGCTTCATGCACTAGCCAAT 57.568 45.000 11.63 0.00 45.94 3.16
3353 3518 1.376086 GGGGGCAGCAGCAATTTTT 59.624 52.632 2.65 0.00 44.61 1.94
3354 3519 3.071575 GGGGGCAGCAGCAATTTT 58.928 55.556 2.65 0.00 44.61 1.82
3371 3536 2.103263 GGCCTATACTTGGACACAGAGG 59.897 54.545 0.00 0.00 31.53 3.69
3376 3541 3.451178 TCAAGAGGCCTATACTTGGACAC 59.549 47.826 24.88 2.66 40.60 3.67
3444 3609 2.039084 ACACTTCAACATCCCCTCTCAC 59.961 50.000 0.00 0.00 0.00 3.51
3622 3787 0.174617 GGACTGAGAGTGCTACTGCC 59.825 60.000 0.00 0.00 38.71 4.85
3669 3834 2.289565 GCCAGGATTAAGGAGGAAACG 58.710 52.381 0.00 0.00 0.00 3.60
3684 3849 0.179004 TTGTGTAAGTGGTGGCCAGG 60.179 55.000 5.11 0.00 32.34 4.45
3797 3970 2.552155 GGAGAGGTACATGGTTGCAACA 60.552 50.000 29.55 16.61 0.00 3.33
3986 4159 4.588528 AGTTCACCACAGTAAATTTGGCAT 59.411 37.500 0.00 0.00 33.25 4.40
3994 4167 5.941647 GGGCTATTTAGTTCACCACAGTAAA 59.058 40.000 0.00 0.00 0.00 2.01
4002 4175 4.569564 CGTAACAGGGCTATTTAGTTCACC 59.430 45.833 0.00 0.00 0.00 4.02
4024 4197 9.262472 GATAGTTCTTTAATGTGCTAAAACACG 57.738 33.333 0.00 0.00 43.74 4.49
4162 4335 2.752354 TGGCACTTGATGGTATTTTCCG 59.248 45.455 0.00 0.00 0.00 4.30
4322 4511 4.322080 TCACCAAGCTGGAATACTATCG 57.678 45.455 8.91 0.00 40.96 2.92
4674 4872 9.731001 AGGAATCCTTAGAAGTTTTCCTATAGA 57.269 33.333 15.93 0.00 40.65 1.98
4760 5025 3.643199 TCTGTAACCAAGCCATATGCA 57.357 42.857 0.00 0.00 44.83 3.96
4968 5246 2.214376 TAACCATGACCCTTTGCTGG 57.786 50.000 0.00 0.00 0.00 4.85
5269 5549 9.220767 GGTTCTGAAAAGTACAATCAGTATTCT 57.779 33.333 17.01 0.00 41.04 2.40
5535 5820 7.756722 GTCCTGAAATGGAATAAACATGTCAAG 59.243 37.037 0.00 0.00 40.88 3.02
5536 5821 7.309744 GGTCCTGAAATGGAATAAACATGTCAA 60.310 37.037 0.00 0.00 40.88 3.18
5537 5822 6.152661 GGTCCTGAAATGGAATAAACATGTCA 59.847 38.462 0.00 0.00 39.58 3.58
5538 5823 6.152661 TGGTCCTGAAATGGAATAAACATGTC 59.847 38.462 0.00 0.00 37.93 3.06
5541 5826 7.552050 TTTGGTCCTGAAATGGAATAAACAT 57.448 32.000 0.00 0.00 37.93 2.71
5960 6245 2.084610 TGAAGCACTTCAGATGGTCG 57.915 50.000 8.99 0.00 43.90 4.79
6695 6981 3.795688 ATGTCAGGGTGTGTGAGAAAT 57.204 42.857 0.00 0.00 0.00 2.17
6971 7259 2.550606 TGCCTGTTTACGCTTTTTCGAT 59.449 40.909 0.00 0.00 0.00 3.59
7139 7427 2.394632 ACCTCCACTGCAATACGGATA 58.605 47.619 0.00 0.00 0.00 2.59
7294 7582 3.056179 TGTCAGTTCTCACACACAACTCA 60.056 43.478 0.00 0.00 0.00 3.41
7431 7720 1.815003 CACTTGATGGCCTTCTGTTCC 59.185 52.381 18.67 0.00 0.00 3.62
7575 7864 1.358046 GGCATCGGCTTGATCTTGC 59.642 57.895 0.00 0.00 40.87 4.01
7608 7897 0.451135 GCGTGTGATGCGAGTTGTTC 60.451 55.000 0.00 0.00 0.00 3.18
7663 7954 6.548321 TGAAACAATAAGACACCCAGGTTAT 58.452 36.000 0.00 0.00 0.00 1.89
7845 8136 4.047822 CGATGTTACATCCAAGCTCTCTC 58.952 47.826 18.33 0.00 0.00 3.20
8053 8344 3.436577 ACTTAAGACTCCTCCTCGTCA 57.563 47.619 10.09 0.00 32.68 4.35
8063 8354 4.021016 TCAGCTCCCAAGAACTTAAGACTC 60.021 45.833 10.09 5.40 0.00 3.36
8064 8355 3.904339 TCAGCTCCCAAGAACTTAAGACT 59.096 43.478 10.09 5.35 0.00 3.24
8222 8514 7.274033 ACGCACACAATCAAATCATAATCTTTG 59.726 33.333 0.00 0.00 34.41 2.77
8233 8525 4.629634 TCGAATCTACGCACACAATCAAAT 59.370 37.500 0.00 0.00 0.00 2.32
8242 8534 3.119280 TCCTTGAATCGAATCTACGCACA 60.119 43.478 1.55 0.00 0.00 4.57
8245 8538 4.299155 TGATCCTTGAATCGAATCTACGC 58.701 43.478 1.55 0.00 0.00 4.42
8388 8699 3.510360 CCTATCGATCGGTTGGATAAGGT 59.490 47.826 22.32 0.00 34.82 3.50
8389 8700 3.676324 GCCTATCGATCGGTTGGATAAGG 60.676 52.174 29.35 18.78 34.82 2.69
8392 8703 1.822990 GGCCTATCGATCGGTTGGATA 59.177 52.381 29.35 12.28 34.82 2.59
8401 8759 5.237815 TGACATGTTTATGGCCTATCGATC 58.762 41.667 0.00 0.00 41.94 3.69
8460 8819 5.500234 CAAAAGTTCATATGGACAGGAGGA 58.500 41.667 16.62 0.00 0.00 3.71
8540 8899 1.300481 GAGCGAAGGGTTATTCAGGC 58.700 55.000 0.00 0.00 0.00 4.85
8541 8900 1.486726 AGGAGCGAAGGGTTATTCAGG 59.513 52.381 0.00 0.00 0.00 3.86
8542 8901 2.555199 CAGGAGCGAAGGGTTATTCAG 58.445 52.381 0.00 0.00 0.00 3.02
8543 8902 1.406887 GCAGGAGCGAAGGGTTATTCA 60.407 52.381 0.00 0.00 0.00 2.57
8544 8903 1.300481 GCAGGAGCGAAGGGTTATTC 58.700 55.000 0.00 0.00 0.00 1.75
8545 8904 0.107165 GGCAGGAGCGAAGGGTTATT 60.107 55.000 0.00 0.00 43.41 1.40
8546 8905 1.527370 GGCAGGAGCGAAGGGTTAT 59.473 57.895 0.00 0.00 43.41 1.89
8552 8911 4.379243 ACGTGGGCAGGAGCGAAG 62.379 66.667 0.00 0.00 43.41 3.79
8611 8976 1.626686 CATAGGAGATGAGGCGGACT 58.373 55.000 0.00 0.00 0.00 3.85
8702 9067 6.576662 TGACACAAACCTAACAAAACTCAA 57.423 33.333 0.00 0.00 0.00 3.02
8723 9089 1.404717 GCCTCGTCTTCTTGAGCATGA 60.405 52.381 0.00 0.00 0.00 3.07
8860 9228 1.134175 CACCAAAGACAAACGCCAACT 59.866 47.619 0.00 0.00 0.00 3.16
8863 9231 0.394488 TCCACCAAAGACAAACGCCA 60.394 50.000 0.00 0.00 0.00 5.69
8915 9283 0.254462 TCCAACCTGCAGACACACAA 59.746 50.000 17.39 0.00 0.00 3.33
8945 9313 1.442769 GCCGATGAAGAGAAGCACAA 58.557 50.000 0.00 0.00 0.00 3.33
8947 9315 1.424493 CCGCCGATGAAGAGAAGCAC 61.424 60.000 0.00 0.00 0.00 4.40
8968 9336 0.748005 AGCGCACCAGAACAACAACT 60.748 50.000 11.47 0.00 0.00 3.16
8973 9341 1.891919 GACCAGCGCACCAGAACAA 60.892 57.895 11.47 0.00 0.00 2.83
8997 9365 1.101331 GTCGTCGTCTAAGACCCCAT 58.899 55.000 0.00 0.00 37.85 4.00
8998 9366 0.037303 AGTCGTCGTCTAAGACCCCA 59.963 55.000 0.00 0.00 37.30 4.96
9000 9368 1.132073 GGAAGTCGTCGTCTAAGACCC 59.868 57.143 0.00 0.00 37.30 4.46
9001 9369 1.132073 GGGAAGTCGTCGTCTAAGACC 59.868 57.143 0.00 0.00 37.30 3.85
9002 9370 1.202009 CGGGAAGTCGTCGTCTAAGAC 60.202 57.143 0.00 0.00 36.91 3.01
9004 9372 1.081892 TCGGGAAGTCGTCGTCTAAG 58.918 55.000 0.00 0.00 0.00 2.18
9005 9373 0.798776 GTCGGGAAGTCGTCGTCTAA 59.201 55.000 0.00 0.00 0.00 2.10
9006 9374 0.036952 AGTCGGGAAGTCGTCGTCTA 60.037 55.000 0.00 0.00 0.00 2.59
9007 9375 1.302351 AGTCGGGAAGTCGTCGTCT 60.302 57.895 0.00 0.00 0.00 4.18
9008 9376 1.154263 CAGTCGGGAAGTCGTCGTC 60.154 63.158 0.00 0.00 0.00 4.20
9055 9423 3.470888 CATCGCCCCTCCCTCGTT 61.471 66.667 0.00 0.00 0.00 3.85
9093 9461 0.038251 CGACCACAAGCACTAGAGCA 60.038 55.000 14.80 0.00 36.85 4.26
9098 9466 0.386476 AACGACGACCACAAGCACTA 59.614 50.000 0.00 0.00 0.00 2.74
9108 9476 1.453155 TAGACCACCTAACGACGACC 58.547 55.000 0.00 0.00 0.00 4.79
9232 9600 2.283529 GCCACCCAGAGTTCGGAGA 61.284 63.158 0.00 0.00 0.00 3.71
9233 9601 1.903877 ATGCCACCCAGAGTTCGGAG 61.904 60.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.