Multiple sequence alignment - TraesCS7D01G205500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G205500 chr7D 100.000 2788 0 0 1 2788 163088503 163085716 0.000000e+00 5149.0
1 TraesCS7D01G205500 chr7D 92.192 730 50 4 2012 2738 513815136 513815861 0.000000e+00 1026.0
2 TraesCS7D01G205500 chr7D 82.348 1099 121 42 754 1834 163251502 163250459 0.000000e+00 887.0
3 TraesCS7D01G205500 chr7D 83.044 979 116 29 860 1834 163215737 163214805 0.000000e+00 843.0
4 TraesCS7D01G205500 chr7D 83.628 849 108 18 997 1842 163199879 163199059 0.000000e+00 769.0
5 TraesCS7D01G205500 chr7D 76.407 551 77 28 235 752 163200620 163200090 5.960000e-62 248.0
6 TraesCS7D01G205500 chr7D 87.200 125 16 0 705 829 163119774 163119650 2.890000e-30 143.0
7 TraesCS7D01G205500 chr7D 85.000 140 18 3 2002 2139 99717234 99717096 3.740000e-29 139.0
8 TraesCS7D01G205500 chr7D 82.166 157 10 4 455 605 163127862 163127718 4.880000e-23 119.0
9 TraesCS7D01G205500 chr7D 95.833 48 2 0 2739 2786 163519114 163519161 8.280000e-11 78.7
10 TraesCS7D01G205500 chr7A 89.505 1334 84 7 532 1836 163928921 163927615 0.000000e+00 1637.0
11 TraesCS7D01G205500 chr7A 87.117 1110 56 20 1 1053 163992142 163991063 0.000000e+00 1177.0
12 TraesCS7D01G205500 chr7A 86.691 1082 73 11 21 1053 163949526 163948467 0.000000e+00 1134.0
13 TraesCS7D01G205500 chr7A 81.827 1029 136 34 819 1834 164182304 164181314 0.000000e+00 817.0
14 TraesCS7D01G205500 chr7A 86.116 533 35 6 21 528 163930551 163930033 3.160000e-149 538.0
15 TraesCS7D01G205500 chr7B 88.758 934 78 13 899 1829 125186652 125185743 0.000000e+00 1118.0
16 TraesCS7D01G205500 chr7B 83.593 963 106 26 874 1834 125244356 125243444 0.000000e+00 856.0
17 TraesCS7D01G205500 chr7B 82.783 999 123 29 847 1842 125192037 125191085 0.000000e+00 846.0
18 TraesCS7D01G205500 chr7B 83.204 899 109 28 939 1834 125356063 125355204 0.000000e+00 785.0
19 TraesCS7D01G205500 chr7B 83.808 667 75 19 1170 1834 125313255 125312620 1.100000e-168 603.0
20 TraesCS7D01G205500 chr7B 83.658 667 76 19 1170 1834 125280443 125279808 5.140000e-167 597.0
21 TraesCS7D01G205500 chr7B 88.196 449 51 2 1388 1834 125221103 125220655 4.090000e-148 534.0
22 TraesCS7D01G205500 chr7B 91.940 397 6 2 443 814 125187734 125187339 1.470000e-147 532.0
23 TraesCS7D01G205500 chr7B 82.759 464 49 20 860 1314 125363359 125362918 4.360000e-103 385.0
24 TraesCS7D01G205500 chr7B 83.234 334 33 5 27 360 125188651 125188341 4.540000e-73 285.0
25 TraesCS7D01G205500 chr7B 94.118 102 5 1 1829 1929 145867819 145867718 1.340000e-33 154.0
26 TraesCS7D01G205500 chr7B 94.118 102 5 1 1829 1929 468561766 468561665 1.340000e-33 154.0
27 TraesCS7D01G205500 chr7B 87.200 125 12 4 2018 2139 473647234 473647357 3.740000e-29 139.0
28 TraesCS7D01G205500 chr7B 95.833 48 2 0 2739 2786 192138566 192138613 8.280000e-11 78.7
29 TraesCS7D01G205500 chr7B 95.833 48 2 0 2739 2786 192142929 192142976 8.280000e-11 78.7
30 TraesCS7D01G205500 chr7B 100.000 35 0 0 799 833 125186908 125186874 6.450000e-07 65.8
31 TraesCS7D01G205500 chr7B 92.105 38 3 0 745 782 125192145 125192108 1.000000e-03 54.7
32 TraesCS7D01G205500 chr2B 96.809 94 3 0 1833 1926 662898922 662899015 1.030000e-34 158.0
33 TraesCS7D01G205500 chr2B 92.857 56 2 2 2731 2786 171037844 171037791 2.300000e-11 80.5
34 TraesCS7D01G205500 chr6D 96.774 93 3 0 1833 1925 132853873 132853781 3.720000e-34 156.0
35 TraesCS7D01G205500 chr6D 93.137 102 6 1 1829 1929 457775518 457775417 6.220000e-32 148.0
36 TraesCS7D01G205500 chr5B 94.949 99 4 1 1832 1929 273966021 273965923 1.340000e-33 154.0
37 TraesCS7D01G205500 chr2A 94.898 98 3 2 1833 1929 714302917 714303013 4.810000e-33 152.0
38 TraesCS7D01G205500 chr6B 91.743 109 6 3 1824 1929 353015848 353015956 6.220000e-32 148.0
39 TraesCS7D01G205500 chr3B 91.743 109 6 3 1824 1929 729568752 729568860 6.220000e-32 148.0
40 TraesCS7D01G205500 chr2D 100.000 48 0 0 2739 2786 39014298 39014251 3.820000e-14 89.8
41 TraesCS7D01G205500 chr2D 97.826 46 1 0 2739 2784 569944009 569943964 2.300000e-11 80.5
42 TraesCS7D01G205500 chr4D 97.917 48 1 0 2739 2786 314190776 314190823 1.780000e-12 84.2
43 TraesCS7D01G205500 chr3D 95.833 48 2 0 2739 2786 550744969 550745016 8.280000e-11 78.7
44 TraesCS7D01G205500 chr3D 92.308 52 4 0 2735 2786 587717663 587717612 1.070000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G205500 chr7D 163085716 163088503 2787 True 5149.000000 5149 100.000000 1 2788 1 chr7D.!!$R2 2787
1 TraesCS7D01G205500 chr7D 513815136 513815861 725 False 1026.000000 1026 92.192000 2012 2738 1 chr7D.!!$F2 726
2 TraesCS7D01G205500 chr7D 163250459 163251502 1043 True 887.000000 887 82.348000 754 1834 1 chr7D.!!$R6 1080
3 TraesCS7D01G205500 chr7D 163214805 163215737 932 True 843.000000 843 83.044000 860 1834 1 chr7D.!!$R5 974
4 TraesCS7D01G205500 chr7D 163199059 163200620 1561 True 508.500000 769 80.017500 235 1842 2 chr7D.!!$R7 1607
5 TraesCS7D01G205500 chr7A 163991063 163992142 1079 True 1177.000000 1177 87.117000 1 1053 1 chr7A.!!$R2 1052
6 TraesCS7D01G205500 chr7A 163948467 163949526 1059 True 1134.000000 1134 86.691000 21 1053 1 chr7A.!!$R1 1032
7 TraesCS7D01G205500 chr7A 163927615 163930551 2936 True 1087.500000 1637 87.810500 21 1836 2 chr7A.!!$R4 1815
8 TraesCS7D01G205500 chr7A 164181314 164182304 990 True 817.000000 817 81.827000 819 1834 1 chr7A.!!$R3 1015
9 TraesCS7D01G205500 chr7B 125243444 125244356 912 True 856.000000 856 83.593000 874 1834 1 chr7B.!!$R2 960
10 TraesCS7D01G205500 chr7B 125355204 125356063 859 True 785.000000 785 83.204000 939 1834 1 chr7B.!!$R5 895
11 TraesCS7D01G205500 chr7B 125312620 125313255 635 True 603.000000 603 83.808000 1170 1834 1 chr7B.!!$R4 664
12 TraesCS7D01G205500 chr7B 125279808 125280443 635 True 597.000000 597 83.658000 1170 1834 1 chr7B.!!$R3 664
13 TraesCS7D01G205500 chr7B 125185743 125192145 6402 True 483.583333 1118 89.803333 27 1842 6 chr7B.!!$R9 1815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 3705 1.318576 GGATATTTTGAGGGCCCGTG 58.681 55.0 18.44 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 7939 0.033642 TGGACAAACGTGATGGCGTA 59.966 50.0 6.56 0.0 45.0 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 3576 3.069443 TCCCAGTTTGTTTGCTTCCATTC 59.931 43.478 0.00 0.00 0.00 2.67
113 3581 5.916883 CAGTTTGTTTGCTTCCATTCTACAG 59.083 40.000 0.00 0.00 0.00 2.74
129 3598 2.684001 ACAGGAAAACAGACACGTGA 57.316 45.000 25.01 0.00 0.00 4.35
136 3605 2.288961 AACAGACACGTGAACTCGTT 57.711 45.000 25.01 20.20 42.27 3.85
156 3625 2.647683 TGCGGACAAATATATGCCCA 57.352 45.000 0.00 0.00 0.00 5.36
184 3667 3.114616 CTTGCAGCGTCCGGACAG 61.115 66.667 32.80 24.88 0.00 3.51
185 3668 3.865929 CTTGCAGCGTCCGGACAGT 62.866 63.158 32.80 17.25 0.00 3.55
186 3669 3.454587 TTGCAGCGTCCGGACAGTT 62.455 57.895 32.80 20.31 0.00 3.16
187 3670 3.112709 GCAGCGTCCGGACAGTTC 61.113 66.667 32.80 18.21 0.00 3.01
188 3671 2.338620 CAGCGTCCGGACAGTTCA 59.661 61.111 32.80 0.00 0.00 3.18
189 3672 1.734477 CAGCGTCCGGACAGTTCAG 60.734 63.158 32.80 17.05 0.00 3.02
190 3673 2.201022 AGCGTCCGGACAGTTCAGT 61.201 57.895 32.80 6.91 0.00 3.41
191 3674 1.733399 GCGTCCGGACAGTTCAGTC 60.733 63.158 32.80 9.03 37.80 3.51
222 3705 1.318576 GGATATTTTGAGGGCCCGTG 58.681 55.000 18.44 0.00 0.00 4.94
292 3778 1.822990 AGAGGTCGAAGCGGTATTCAA 59.177 47.619 0.00 0.00 0.00 2.69
379 3869 4.563580 GCTCACACTGTCTCTCCCAATAAA 60.564 45.833 0.00 0.00 0.00 1.40
412 4398 2.383527 GCTGAGGTCGCAAGGAACG 61.384 63.158 0.00 0.00 37.47 3.95
518 4529 7.307514 CCTCACGCTATTTCTACTAGTAGTCTG 60.308 44.444 25.58 14.85 34.84 3.51
658 5783 3.195610 TGTTCACCTAGACATACAGCAGG 59.804 47.826 0.00 0.00 0.00 4.85
784 5951 1.374885 CATGCGTCCAACGTACCCA 60.375 57.895 1.14 0.00 44.73 4.51
858 6671 5.947566 GTGGATTCTCCTATCCTAGTAGACC 59.052 48.000 0.00 0.00 43.75 3.85
897 6718 6.231951 GCCTATATAAACCAGAGGGAACTTC 58.768 44.000 0.00 0.00 44.43 3.01
950 6785 1.404391 CTGCATCCAGAGCACAATTCC 59.596 52.381 0.00 0.00 41.77 3.01
958 6793 3.318839 CCAGAGCACAATTCCAGACAAAA 59.681 43.478 0.00 0.00 0.00 2.44
964 6799 5.105392 AGCACAATTCCAGACAAAACAGAAA 60.105 36.000 0.00 0.00 0.00 2.52
965 6800 5.232838 GCACAATTCCAGACAAAACAGAAAG 59.767 40.000 0.00 0.00 0.00 2.62
967 6802 5.127682 ACAATTCCAGACAAAACAGAAAGCT 59.872 36.000 0.00 0.00 0.00 3.74
968 6803 6.321181 ACAATTCCAGACAAAACAGAAAGCTA 59.679 34.615 0.00 0.00 0.00 3.32
975 6810 5.590259 AGACAAAACAGAAAGCTACACACAT 59.410 36.000 0.00 0.00 0.00 3.21
976 6811 6.765989 AGACAAAACAGAAAGCTACACACATA 59.234 34.615 0.00 0.00 0.00 2.29
977 6812 6.959361 ACAAAACAGAAAGCTACACACATAG 58.041 36.000 0.00 0.00 0.00 2.23
978 6813 6.542370 ACAAAACAGAAAGCTACACACATAGT 59.458 34.615 0.00 0.00 0.00 2.12
979 6814 7.713507 ACAAAACAGAAAGCTACACACATAGTA 59.286 33.333 0.00 0.00 0.00 1.82
980 6815 7.653767 AAACAGAAAGCTACACACATAGTAC 57.346 36.000 0.00 0.00 0.00 2.73
981 6816 6.591750 ACAGAAAGCTACACACATAGTACT 57.408 37.500 0.00 0.00 0.00 2.73
982 6817 7.698506 ACAGAAAGCTACACACATAGTACTA 57.301 36.000 4.77 4.77 0.00 1.82
1042 6893 4.890158 TGGATCAGTGTTTCTCTGCTTA 57.110 40.909 0.00 0.00 33.48 3.09
1176 7027 4.099170 CGCCCGTTCGACGAGTCT 62.099 66.667 8.63 0.00 46.05 3.24
1197 7048 3.486263 GGCGCACGATACAGCTTT 58.514 55.556 10.83 0.00 0.00 3.51
1237 7088 0.666577 GTGGGTGTTCTCTTCCGACG 60.667 60.000 0.00 0.00 0.00 5.12
1298 7149 4.141846 TGAGATCAGGATGGCAGTAAGTTC 60.142 45.833 0.00 0.00 36.16 3.01
1451 7334 0.106318 AGTTCGAGGGCTACGGGTAT 60.106 55.000 0.00 0.00 0.00 2.73
1645 7528 1.292223 CATCGACCCTCACCGTGTT 59.708 57.895 0.00 0.00 0.00 3.32
1674 7557 0.094216 CGAACAGAAGCTGCATGTCG 59.906 55.000 1.02 0.00 34.37 4.35
1718 7601 4.451096 CACTACTTCAAGTTTGGCGTGTAT 59.549 41.667 0.00 0.00 0.00 2.29
1789 7672 7.925483 CGTCAAGATCCTCAAGAAAGATTAGAT 59.075 37.037 0.00 0.00 0.00 1.98
1836 7724 6.631016 TGATGGAGTGACTATGTTTGTACTC 58.369 40.000 0.00 0.00 35.13 2.59
1839 7727 4.466726 GGAGTGACTATGTTTGTACTCCCT 59.533 45.833 9.49 0.00 45.23 4.20
1842 7730 3.446161 TGACTATGTTTGTACTCCCTCGG 59.554 47.826 0.00 0.00 0.00 4.63
1843 7731 3.438183 ACTATGTTTGTACTCCCTCGGT 58.562 45.455 0.00 0.00 0.00 4.69
1844 7732 3.446516 ACTATGTTTGTACTCCCTCGGTC 59.553 47.826 0.00 0.00 0.00 4.79
1845 7733 0.971386 TGTTTGTACTCCCTCGGTCC 59.029 55.000 0.00 0.00 0.00 4.46
1846 7734 0.248565 GTTTGTACTCCCTCGGTCCC 59.751 60.000 0.00 0.00 0.00 4.46
1847 7735 0.178926 TTTGTACTCCCTCGGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
1848 7736 0.042131 TTGTACTCCCTCGGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
1849 7737 0.928505 TGTACTCCCTCGGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
1850 7738 1.288633 TGTACTCCCTCGGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
1851 7739 2.090943 TGTACTCCCTCGGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
1852 7740 3.140707 TGTACTCCCTCGGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
1853 7741 3.562108 ACTCCCTCGGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1854 7742 4.687262 ACTCCCTCGGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1855 7743 5.019657 ACTCCCTCGGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1856 7744 5.024118 ACTCCCTCGGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1857 7745 5.222484 ACTCCCTCGGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1858 7746 5.657446 TCCCTCGGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1859 7747 5.482878 TCCCTCGGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
1860 7748 5.408356 CCTCGGTCCCATAATATAAGAACG 58.592 45.833 3.58 3.58 38.96 3.95
1861 7749 5.047519 CCTCGGTCCCATAATATAAGAACGT 60.048 44.000 8.39 0.00 38.72 3.99
1862 7750 6.409524 TCGGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 38.72 3.99
1863 7751 6.819284 TCGGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 38.72 3.60
1864 7752 7.274447 TCGGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 38.72 2.43
1865 7753 7.769970 TCGGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 38.72 1.94
1866 7754 7.853929 CGGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 33.14 2.44
1867 7755 8.895737 GGTCCCATAATATAAGAACGTTTTTGA 58.104 33.333 13.87 2.81 0.00 2.69
1868 7756 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
1869 7757 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
1879 7767 7.781548 AGAACGTTTTTGACATTAGTGTAGT 57.218 32.000 0.46 0.00 39.09 2.73
1880 7768 7.627340 AGAACGTTTTTGACATTAGTGTAGTG 58.373 34.615 0.46 0.00 39.09 2.74
1881 7769 6.913873 ACGTTTTTGACATTAGTGTAGTGT 57.086 33.333 0.00 0.00 39.09 3.55
1882 7770 6.940714 ACGTTTTTGACATTAGTGTAGTGTC 58.059 36.000 0.00 3.35 43.31 3.67
1890 7778 6.913873 ACATTAGTGTAGTGTCAAAAACGT 57.086 33.333 0.00 0.00 36.63 3.99
1891 7779 7.311364 ACATTAGTGTAGTGTCAAAAACGTT 57.689 32.000 0.00 0.00 36.63 3.99
1892 7780 7.404203 ACATTAGTGTAGTGTCAAAAACGTTC 58.596 34.615 0.00 0.00 36.63 3.95
1893 7781 7.279313 ACATTAGTGTAGTGTCAAAAACGTTCT 59.721 33.333 0.00 0.00 36.63 3.01
1894 7782 7.599630 TTAGTGTAGTGTCAAAAACGTTCTT 57.400 32.000 0.00 0.00 0.00 2.52
1895 7783 8.700722 TTAGTGTAGTGTCAAAAACGTTCTTA 57.299 30.769 0.00 0.00 0.00 2.10
1896 7784 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
1897 7785 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
1898 7786 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
1911 7799 9.751542 AAACGTTCTTATATTATGAGACAGAGG 57.248 33.333 0.00 0.00 0.00 3.69
1912 7800 7.887381 ACGTTCTTATATTATGAGACAGAGGG 58.113 38.462 0.00 0.00 0.00 4.30
1913 7801 7.724506 ACGTTCTTATATTATGAGACAGAGGGA 59.275 37.037 0.00 0.00 0.00 4.20
1914 7802 8.240682 CGTTCTTATATTATGAGACAGAGGGAG 58.759 40.741 0.00 0.00 0.00 4.30
1915 7803 9.084533 GTTCTTATATTATGAGACAGAGGGAGT 57.915 37.037 0.00 0.00 0.00 3.85
1926 7814 7.671302 TGAGACAGAGGGAGTATTATTTATGC 58.329 38.462 0.00 0.00 0.00 3.14
1927 7815 7.290014 TGAGACAGAGGGAGTATTATTTATGCA 59.710 37.037 0.00 0.00 0.00 3.96
1928 7816 8.212259 AGACAGAGGGAGTATTATTTATGCAT 57.788 34.615 3.79 3.79 0.00 3.96
1929 7817 8.099537 AGACAGAGGGAGTATTATTTATGCATG 58.900 37.037 10.16 0.00 0.00 4.06
1930 7818 7.170965 ACAGAGGGAGTATTATTTATGCATGG 58.829 38.462 10.16 0.00 0.00 3.66
1931 7819 7.017551 ACAGAGGGAGTATTATTTATGCATGGA 59.982 37.037 10.16 0.00 0.00 3.41
1932 7820 7.551974 CAGAGGGAGTATTATTTATGCATGGAG 59.448 40.741 10.16 0.00 0.00 3.86
1933 7821 7.238514 AGAGGGAGTATTATTTATGCATGGAGT 59.761 37.037 10.16 0.00 0.00 3.85
1934 7822 7.759607 AGGGAGTATTATTTATGCATGGAGTT 58.240 34.615 10.16 0.00 0.00 3.01
1935 7823 8.227507 AGGGAGTATTATTTATGCATGGAGTTT 58.772 33.333 10.16 0.00 0.00 2.66
1936 7824 9.515226 GGGAGTATTATTTATGCATGGAGTTTA 57.485 33.333 10.16 0.00 0.00 2.01
1946 7834 8.887036 TTATGCATGGAGTTTAGTAGTATGTG 57.113 34.615 10.16 0.00 0.00 3.21
1947 7835 6.294361 TGCATGGAGTTTAGTAGTATGTGT 57.706 37.500 0.00 0.00 0.00 3.72
1948 7836 6.707290 TGCATGGAGTTTAGTAGTATGTGTT 58.293 36.000 0.00 0.00 0.00 3.32
1949 7837 7.165485 TGCATGGAGTTTAGTAGTATGTGTTT 58.835 34.615 0.00 0.00 0.00 2.83
1950 7838 8.315482 TGCATGGAGTTTAGTAGTATGTGTTTA 58.685 33.333 0.00 0.00 0.00 2.01
1951 7839 9.326413 GCATGGAGTTTAGTAGTATGTGTTTAT 57.674 33.333 0.00 0.00 0.00 1.40
1978 7866 9.855021 TTGTTATGATGTATATACGAGGATGTG 57.145 33.333 8.33 0.00 0.00 3.21
1979 7867 9.020731 TGTTATGATGTATATACGAGGATGTGT 57.979 33.333 8.33 0.00 0.00 3.72
1998 7886 9.825972 GGATGTGTATTTTATATGTATGTGTGC 57.174 33.333 0.00 0.00 0.00 4.57
2059 7949 3.188460 ACAAAAGTCATGTACGCCATCAC 59.812 43.478 0.00 0.00 0.00 3.06
2103 7993 9.944663 GATATTATTTGCACCGTTTGATTAGAA 57.055 29.630 0.00 0.00 0.00 2.10
2105 7995 7.861176 TTATTTGCACCGTTTGATTAGAAAC 57.139 32.000 0.00 0.00 33.27 2.78
2173 8063 9.642327 ACATACAATATAGTCACGTACAAACAA 57.358 29.630 0.00 0.00 0.00 2.83
2176 8066 8.014322 ACAATATAGTCACGTACAAACAAGTG 57.986 34.615 0.00 0.00 36.06 3.16
2183 8073 2.289547 ACGTACAAACAAGTGCACCATC 59.710 45.455 14.63 0.00 0.00 3.51
2198 8088 3.120477 GCACCATCGACACGTGAAATAAA 60.120 43.478 25.01 1.35 0.00 1.40
2202 8092 6.254804 CACCATCGACACGTGAAATAAATCTA 59.745 38.462 25.01 0.00 0.00 1.98
2232 8122 5.253330 ACACATATAAAACCAGGTCAGGTG 58.747 41.667 0.00 0.00 42.25 4.00
2243 8133 1.414919 AGGTCAGGTGCACGTTAGAAA 59.585 47.619 9.81 0.00 0.00 2.52
2244 8134 1.798813 GGTCAGGTGCACGTTAGAAAG 59.201 52.381 9.81 0.00 0.00 2.62
2245 8135 2.547218 GGTCAGGTGCACGTTAGAAAGA 60.547 50.000 9.81 0.00 0.00 2.52
2246 8136 3.128349 GTCAGGTGCACGTTAGAAAGAA 58.872 45.455 9.81 0.00 0.00 2.52
2278 8168 6.795098 ACTTACGTGACATGCTTTTTATGA 57.205 33.333 0.00 0.00 0.00 2.15
2349 8239 5.014123 AGGAAACTCACACCTGGAATATGAA 59.986 40.000 0.00 0.00 32.90 2.57
2362 8252 7.177184 CCTGGAATATGAATGGAATATGGACA 58.823 38.462 0.00 0.00 0.00 4.02
2363 8253 7.338703 CCTGGAATATGAATGGAATATGGACAG 59.661 40.741 0.00 0.00 0.00 3.51
2376 8266 7.339212 TGGAATATGGACAGTTAACAAATCAGG 59.661 37.037 8.61 0.00 0.00 3.86
2397 8287 4.040706 AGGTCACGTACACATAGGGAAAAA 59.959 41.667 0.00 0.00 0.00 1.94
2444 8334 8.184848 GGTCTTTCAGCTGGAAAAGAATTATAC 58.815 37.037 24.42 15.05 44.52 1.47
2519 8409 5.638234 AGAAACGTAATCCAAGCTAACTCAC 59.362 40.000 0.00 0.00 0.00 3.51
2527 8417 1.192146 AAGCTAACTCACGGGAGGCA 61.192 55.000 20.91 4.87 45.81 4.75
2529 8419 0.107654 GCTAACTCACGGGAGGCAAT 60.108 55.000 20.91 4.70 45.81 3.56
2534 8424 0.321564 CTCACGGGAGGCAATCACAA 60.322 55.000 6.84 0.00 37.51 3.33
2544 8435 2.362077 AGGCAATCACAAAACACTCACC 59.638 45.455 0.00 0.00 0.00 4.02
2548 8439 4.772434 CAATCACAAAACACTCACCTACG 58.228 43.478 0.00 0.00 0.00 3.51
2598 8489 1.871039 GCAAGGTCGCTGTTTTGTCTA 59.129 47.619 0.00 0.00 0.00 2.59
2626 8517 1.491563 CGAGCGGAAGTTTTGGTCG 59.508 57.895 13.11 13.11 45.34 4.79
2677 8568 1.954651 GGCTATGGCGCCGTAACTC 60.955 63.158 27.63 18.69 40.79 3.01
2682 8573 2.047560 GGCGCCGTAACTCTTGGT 60.048 61.111 12.58 0.00 0.00 3.67
2686 8577 1.347320 CGCCGTAACTCTTGGTTCTC 58.653 55.000 0.00 0.00 39.17 2.87
2722 8613 2.158475 AGCCTGAAGAAAACATGGACCA 60.158 45.455 0.00 0.00 0.00 4.02
2725 8616 2.886523 CTGAAGAAAACATGGACCAGCA 59.113 45.455 0.00 0.00 0.00 4.41
2741 8632 3.289834 CAGGCTGGCAACGCTGTT 61.290 61.111 6.61 0.00 42.51 3.16
2742 8633 3.289834 AGGCTGGCAACGCTGTTG 61.290 61.111 14.44 14.44 42.51 3.33
2743 8634 3.286751 GGCTGGCAACGCTGTTGA 61.287 61.111 20.50 4.74 42.51 3.18
2744 8635 2.050985 GCTGGCAACGCTGTTGAC 60.051 61.111 20.50 18.78 42.51 3.18
2745 8636 2.833533 GCTGGCAACGCTGTTGACA 61.834 57.895 22.57 22.57 42.51 3.58
2746 8637 1.951510 CTGGCAACGCTGTTGACAT 59.048 52.632 23.67 0.00 36.75 3.06
2747 8638 0.110056 CTGGCAACGCTGTTGACATC 60.110 55.000 23.67 11.37 36.75 3.06
2748 8639 0.817229 TGGCAACGCTGTTGACATCA 60.817 50.000 20.95 11.75 42.51 3.07
2749 8640 0.110056 GGCAACGCTGTTGACATCAG 60.110 55.000 20.50 8.86 36.18 2.90
2750 8641 0.867746 GCAACGCTGTTGACATCAGA 59.132 50.000 20.50 0.00 35.20 3.27
2751 8642 1.466167 GCAACGCTGTTGACATCAGAT 59.534 47.619 20.50 2.08 35.20 2.90
2752 8643 2.095567 GCAACGCTGTTGACATCAGATT 60.096 45.455 20.50 7.45 35.20 2.40
2753 8644 3.610114 GCAACGCTGTTGACATCAGATTT 60.610 43.478 20.50 6.10 35.20 2.17
2754 8645 4.539870 CAACGCTGTTGACATCAGATTTT 58.460 39.130 16.15 4.00 35.20 1.82
2755 8646 4.151258 ACGCTGTTGACATCAGATTTTG 57.849 40.909 16.15 4.00 35.20 2.44
2756 8647 3.058016 ACGCTGTTGACATCAGATTTTGG 60.058 43.478 16.15 2.13 35.20 3.28
2757 8648 3.248266 GCTGTTGACATCAGATTTTGGC 58.752 45.455 16.15 0.00 35.20 4.52
2758 8649 3.305539 GCTGTTGACATCAGATTTTGGCA 60.306 43.478 16.15 0.00 35.20 4.92
2759 8650 4.619863 GCTGTTGACATCAGATTTTGGCAT 60.620 41.667 16.15 0.00 35.20 4.40
2760 8651 4.811908 TGTTGACATCAGATTTTGGCATG 58.188 39.130 0.00 0.00 29.20 4.06
2761 8652 4.178540 GTTGACATCAGATTTTGGCATGG 58.821 43.478 0.00 0.00 29.20 3.66
2762 8653 3.433343 TGACATCAGATTTTGGCATGGT 58.567 40.909 0.00 0.00 0.00 3.55
2763 8654 3.444742 TGACATCAGATTTTGGCATGGTC 59.555 43.478 0.00 0.00 0.00 4.02
2764 8655 3.433343 ACATCAGATTTTGGCATGGTCA 58.567 40.909 0.00 0.00 0.00 4.02
2765 8656 3.833650 ACATCAGATTTTGGCATGGTCAA 59.166 39.130 0.00 0.00 0.00 3.18
2766 8657 4.283978 ACATCAGATTTTGGCATGGTCAAA 59.716 37.500 0.00 0.00 35.24 2.69
2771 8662 1.576356 TTTGGCATGGTCAAAAACGC 58.424 45.000 0.00 0.00 34.07 4.84
2772 8663 0.461548 TTGGCATGGTCAAAAACGCA 59.538 45.000 0.00 0.00 0.00 5.24
2773 8664 0.461548 TGGCATGGTCAAAAACGCAA 59.538 45.000 0.00 0.00 0.00 4.85
2774 8665 1.069823 TGGCATGGTCAAAAACGCAAT 59.930 42.857 0.00 0.00 0.00 3.56
2775 8666 2.142319 GGCATGGTCAAAAACGCAATT 58.858 42.857 0.00 0.00 0.00 2.32
2776 8667 3.243873 TGGCATGGTCAAAAACGCAATTA 60.244 39.130 0.00 0.00 0.00 1.40
2777 8668 3.743396 GGCATGGTCAAAAACGCAATTAA 59.257 39.130 0.00 0.00 0.00 1.40
2778 8669 4.143137 GGCATGGTCAAAAACGCAATTAAG 60.143 41.667 0.00 0.00 0.00 1.85
2779 8670 4.683781 GCATGGTCAAAAACGCAATTAAGA 59.316 37.500 0.00 0.00 0.00 2.10
2780 8671 5.348451 GCATGGTCAAAAACGCAATTAAGAT 59.652 36.000 0.00 0.00 0.00 2.40
2781 8672 6.670452 GCATGGTCAAAAACGCAATTAAGATG 60.670 38.462 0.00 0.00 0.00 2.90
2782 8673 5.226396 TGGTCAAAAACGCAATTAAGATGG 58.774 37.500 0.00 0.00 0.00 3.51
2783 8674 4.091365 GGTCAAAAACGCAATTAAGATGGC 59.909 41.667 0.00 0.00 0.00 4.40
2784 8675 4.091365 GTCAAAAACGCAATTAAGATGGCC 59.909 41.667 0.00 0.00 0.00 5.36
2785 8676 4.021544 TCAAAAACGCAATTAAGATGGCCT 60.022 37.500 3.32 0.00 0.00 5.19
2786 8677 4.535526 AAAACGCAATTAAGATGGCCTT 57.464 36.364 3.32 0.00 38.87 4.35
2787 8678 5.652994 AAAACGCAATTAAGATGGCCTTA 57.347 34.783 3.32 0.00 36.34 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.989787 CGCACCCAAACCCAAGGC 61.990 66.667 0.00 0.00 0.00 4.35
108 3576 3.713288 TCACGTGTCTGTTTTCCTGTAG 58.287 45.455 16.51 0.00 0.00 2.74
113 3581 2.034001 CGAGTTCACGTGTCTGTTTTCC 60.034 50.000 16.51 2.30 0.00 3.13
129 3598 5.729454 GCATATATTTGTCCGCAAACGAGTT 60.729 40.000 0.00 0.00 45.99 3.01
136 3605 2.937519 TGGGCATATATTTGTCCGCAA 58.062 42.857 11.54 0.00 44.66 4.85
156 3625 3.672293 CTGCAAGCCATCCAACGT 58.328 55.556 0.00 0.00 0.00 3.99
182 3665 3.883744 AAGCGGCCGGACTGAACTG 62.884 63.158 29.38 0.00 0.00 3.16
183 3666 3.626924 AAGCGGCCGGACTGAACT 61.627 61.111 29.38 10.66 0.00 3.01
184 3667 3.423154 CAAGCGGCCGGACTGAAC 61.423 66.667 29.38 8.07 0.00 3.18
206 3689 1.304952 CCCACGGGCCCTCAAAATA 59.695 57.895 22.43 0.00 0.00 1.40
207 3690 2.037208 CCCACGGGCCCTCAAAAT 59.963 61.111 22.43 0.00 0.00 1.82
222 3705 2.436646 CAGACATCACACGGGCCC 60.437 66.667 13.57 13.57 0.00 5.80
229 3712 3.007182 TCTCAGATGCAACAGACATCACA 59.993 43.478 6.53 0.00 45.19 3.58
292 3778 6.299141 TCTCAAAGCACTCTGTTAAAATCCT 58.701 36.000 0.00 0.00 0.00 3.24
379 3869 1.210204 TCAGCTGCCCTTGGGAGAAT 61.210 55.000 9.47 0.00 44.17 2.40
518 4529 0.022853 GACGTACGTGCATGCGTTAC 59.977 55.000 28.16 12.41 43.04 2.50
612 5737 4.306600 GGTGGTTCAATTTTGGATGACAC 58.693 43.478 0.00 0.00 0.00 3.67
658 5783 4.743057 ACCCTCCTACGTGGTAATAAAC 57.257 45.455 0.00 0.00 37.07 2.01
897 6718 3.392285 TGATGAGATGGGTGGGACTAATG 59.608 47.826 0.00 0.00 0.00 1.90
950 6785 5.163764 TGTGTGTAGCTTTCTGTTTTGTCTG 60.164 40.000 0.00 0.00 0.00 3.51
958 6793 6.591750 AGTACTATGTGTGTAGCTTTCTGT 57.408 37.500 0.00 0.00 0.00 3.41
976 6811 9.443323 CATGTGTGCTCTATACTCTATAGTACT 57.557 37.037 0.00 0.00 40.98 2.73
977 6812 8.670135 CCATGTGTGCTCTATACTCTATAGTAC 58.330 40.741 0.00 0.00 40.98 2.73
978 6813 7.337184 GCCATGTGTGCTCTATACTCTATAGTA 59.663 40.741 0.00 0.00 42.35 1.82
979 6814 6.151985 GCCATGTGTGCTCTATACTCTATAGT 59.848 42.308 0.00 0.00 39.30 2.12
980 6815 6.376864 AGCCATGTGTGCTCTATACTCTATAG 59.623 42.308 0.00 0.00 39.57 1.31
981 6816 6.249192 AGCCATGTGTGCTCTATACTCTATA 58.751 40.000 0.00 0.00 32.41 1.31
982 6817 5.083122 AGCCATGTGTGCTCTATACTCTAT 58.917 41.667 0.00 0.00 32.41 1.98
995 6846 3.190849 CGCGAGGAGCCATGTGTG 61.191 66.667 0.00 0.00 44.76 3.82
1042 6893 0.389948 GACCACGACGCCAAGAAGAT 60.390 55.000 0.00 0.00 0.00 2.40
1081 6932 3.948719 GGTTCTGGGTGCCCGTGA 61.949 66.667 2.44 0.98 39.42 4.35
1176 7027 2.025584 CTGTATCGTGCGCCGCTA 59.974 61.111 11.67 0.93 36.19 4.26
1197 7048 4.321966 TTCCGCACGGTGCCATCA 62.322 61.111 26.00 6.21 41.12 3.07
1218 7069 0.666577 CGTCGGAAGAGAACACCCAC 60.667 60.000 0.00 0.00 43.49 4.61
1225 7076 1.176619 TGTGGCTCGTCGGAAGAGAA 61.177 55.000 22.45 8.54 43.49 2.87
1298 7149 7.200455 TGACTAGTAATAATGACGTGGTGATG 58.800 38.462 0.00 0.00 0.00 3.07
1372 7237 7.390718 GGTAGAAGAAGAGAGCACCAAATAAAA 59.609 37.037 0.00 0.00 0.00 1.52
1373 7238 6.879458 GGTAGAAGAAGAGAGCACCAAATAAA 59.121 38.462 0.00 0.00 0.00 1.40
1374 7239 6.213600 AGGTAGAAGAAGAGAGCACCAAATAA 59.786 38.462 0.00 0.00 0.00 1.40
1375 7240 5.721960 AGGTAGAAGAAGAGAGCACCAAATA 59.278 40.000 0.00 0.00 0.00 1.40
1376 7241 4.534103 AGGTAGAAGAAGAGAGCACCAAAT 59.466 41.667 0.00 0.00 0.00 2.32
1377 7242 3.904339 AGGTAGAAGAAGAGAGCACCAAA 59.096 43.478 0.00 0.00 0.00 3.28
1378 7243 3.259374 CAGGTAGAAGAAGAGAGCACCAA 59.741 47.826 0.00 0.00 0.00 3.67
1379 7244 2.828520 CAGGTAGAAGAAGAGAGCACCA 59.171 50.000 0.00 0.00 0.00 4.17
1380 7245 2.418060 GCAGGTAGAAGAAGAGAGCACC 60.418 54.545 0.00 0.00 0.00 5.01
1381 7246 2.232452 TGCAGGTAGAAGAAGAGAGCAC 59.768 50.000 0.00 0.00 0.00 4.40
1382 7247 2.495270 CTGCAGGTAGAAGAAGAGAGCA 59.505 50.000 5.57 0.00 0.00 4.26
1383 7248 2.159114 CCTGCAGGTAGAAGAAGAGAGC 60.159 54.545 25.53 0.00 0.00 4.09
1384 7249 2.430332 CCCTGCAGGTAGAAGAAGAGAG 59.570 54.545 30.63 7.20 0.00 3.20
1385 7250 2.461695 CCCTGCAGGTAGAAGAAGAGA 58.538 52.381 30.63 0.00 0.00 3.10
1386 7251 1.134551 GCCCTGCAGGTAGAAGAAGAG 60.135 57.143 30.63 12.57 38.26 2.85
1520 7403 1.280982 CATCGTAGACGTGCAGCATT 58.719 50.000 0.00 0.00 42.51 3.56
1634 7517 1.071019 CGTCGATGAACACGGTGAGG 61.071 60.000 16.29 0.00 32.19 3.86
1645 7528 0.456142 CTTCTGTTCGCCGTCGATGA 60.456 55.000 6.11 0.00 45.04 2.92
1658 7541 1.010935 CGTCGACATGCAGCTTCTGT 61.011 55.000 17.16 0.00 33.43 3.41
1836 7724 5.623824 CGTTCTTATATTATGGGACCGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
1839 7727 6.409524 AACGTTCTTATATTATGGGACCGA 57.590 37.500 0.00 0.00 0.00 4.69
1842 7730 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
1843 7731 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
1853 7741 9.316730 ACTACACTAATGTCAAAAACGTTCTTA 57.683 29.630 0.00 0.00 40.48 2.10
1854 7742 8.120465 CACTACACTAATGTCAAAAACGTTCTT 58.880 33.333 0.00 0.00 40.48 2.52
1855 7743 7.279313 ACACTACACTAATGTCAAAAACGTTCT 59.721 33.333 0.00 0.00 40.48 3.01
1856 7744 7.404203 ACACTACACTAATGTCAAAAACGTTC 58.596 34.615 0.00 0.00 40.48 3.95
1857 7745 7.311364 ACACTACACTAATGTCAAAAACGTT 57.689 32.000 0.00 0.00 40.48 3.99
1858 7746 6.913873 ACACTACACTAATGTCAAAAACGT 57.086 33.333 0.00 0.00 40.48 3.99
1866 7754 6.940714 ACGTTTTTGACACTACACTAATGTC 58.059 36.000 0.00 0.00 42.54 3.06
1867 7755 6.913873 ACGTTTTTGACACTACACTAATGT 57.086 33.333 0.00 0.00 43.30 2.71
1868 7756 7.627340 AGAACGTTTTTGACACTACACTAATG 58.373 34.615 0.46 0.00 0.00 1.90
1869 7757 7.781548 AGAACGTTTTTGACACTACACTAAT 57.218 32.000 0.46 0.00 0.00 1.73
1870 7758 7.599630 AAGAACGTTTTTGACACTACACTAA 57.400 32.000 0.46 0.00 0.00 2.24
1871 7759 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
1872 7760 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
1885 7773 9.751542 CCTCTGTCTCATAATATAAGAACGTTT 57.248 33.333 0.46 0.00 0.00 3.60
1886 7774 8.361139 CCCTCTGTCTCATAATATAAGAACGTT 58.639 37.037 0.00 0.00 0.00 3.99
1887 7775 7.724506 TCCCTCTGTCTCATAATATAAGAACGT 59.275 37.037 0.00 0.00 0.00 3.99
1888 7776 8.112016 TCCCTCTGTCTCATAATATAAGAACG 57.888 38.462 0.00 0.00 0.00 3.95
1889 7777 9.084533 ACTCCCTCTGTCTCATAATATAAGAAC 57.915 37.037 0.00 0.00 0.00 3.01
1900 7788 8.317679 GCATAAATAATACTCCCTCTGTCTCAT 58.682 37.037 0.00 0.00 0.00 2.90
1901 7789 7.290014 TGCATAAATAATACTCCCTCTGTCTCA 59.710 37.037 0.00 0.00 0.00 3.27
1902 7790 7.671302 TGCATAAATAATACTCCCTCTGTCTC 58.329 38.462 0.00 0.00 0.00 3.36
1903 7791 7.618019 TGCATAAATAATACTCCCTCTGTCT 57.382 36.000 0.00 0.00 0.00 3.41
1904 7792 7.335422 CCATGCATAAATAATACTCCCTCTGTC 59.665 40.741 0.00 0.00 0.00 3.51
1905 7793 7.017551 TCCATGCATAAATAATACTCCCTCTGT 59.982 37.037 0.00 0.00 0.00 3.41
1906 7794 7.397221 TCCATGCATAAATAATACTCCCTCTG 58.603 38.462 0.00 0.00 0.00 3.35
1907 7795 7.238514 ACTCCATGCATAAATAATACTCCCTCT 59.761 37.037 0.00 0.00 0.00 3.69
1908 7796 7.398024 ACTCCATGCATAAATAATACTCCCTC 58.602 38.462 0.00 0.00 0.00 4.30
1909 7797 7.335127 ACTCCATGCATAAATAATACTCCCT 57.665 36.000 0.00 0.00 0.00 4.20
1910 7798 8.409358 AAACTCCATGCATAAATAATACTCCC 57.591 34.615 0.00 0.00 0.00 4.30
1920 7808 9.325198 CACATACTACTAAACTCCATGCATAAA 57.675 33.333 0.00 0.00 0.00 1.40
1921 7809 8.482943 ACACATACTACTAAACTCCATGCATAA 58.517 33.333 0.00 0.00 0.00 1.90
1922 7810 8.018537 ACACATACTACTAAACTCCATGCATA 57.981 34.615 0.00 0.00 0.00 3.14
1923 7811 6.889198 ACACATACTACTAAACTCCATGCAT 58.111 36.000 0.00 0.00 0.00 3.96
1924 7812 6.294361 ACACATACTACTAAACTCCATGCA 57.706 37.500 0.00 0.00 0.00 3.96
1925 7813 7.611213 AAACACATACTACTAAACTCCATGC 57.389 36.000 0.00 0.00 0.00 4.06
1952 7840 9.855021 CACATCCTCGTATATACATCATAACAA 57.145 33.333 13.22 0.00 0.00 2.83
1953 7841 9.020731 ACACATCCTCGTATATACATCATAACA 57.979 33.333 13.22 0.00 0.00 2.41
1972 7860 9.825972 GCACACATACATATAAAATACACATCC 57.174 33.333 0.00 0.00 0.00 3.51
1991 7879 9.259832 TGGTAGATAGATAGATATTGCACACAT 57.740 33.333 0.00 0.00 0.00 3.21
1992 7880 8.650143 TGGTAGATAGATAGATATTGCACACA 57.350 34.615 0.00 0.00 0.00 3.72
1993 7881 9.743057 GATGGTAGATAGATAGATATTGCACAC 57.257 37.037 0.00 0.00 0.00 3.82
1994 7882 9.706529 AGATGGTAGATAGATAGATATTGCACA 57.293 33.333 0.00 0.00 0.00 4.57
2040 7930 1.999735 CGTGATGGCGTACATGACTTT 59.000 47.619 0.00 0.00 40.94 2.66
2047 7937 1.141645 GACAAACGTGATGGCGTACA 58.858 50.000 6.56 0.00 45.00 2.90
2048 7938 0.441145 GGACAAACGTGATGGCGTAC 59.559 55.000 6.56 0.00 45.00 3.67
2049 7939 0.033642 TGGACAAACGTGATGGCGTA 59.966 50.000 6.56 0.00 45.00 4.42
2051 7941 1.206578 GTGGACAAACGTGATGGCG 59.793 57.895 6.56 0.00 37.94 5.69
2077 7967 9.944663 TTCTAATCAAACGGTGCAAATAATATC 57.055 29.630 0.00 0.00 0.00 1.63
2103 7993 9.830975 AAAACTTTAAATCTTAGCCATTGTGTT 57.169 25.926 0.00 0.00 0.00 3.32
2147 8037 9.642327 TTGTTTGTACGTGACTATATTGTATGT 57.358 29.630 0.00 0.00 0.00 2.29
2173 8063 1.664649 CACGTGTCGATGGTGCACT 60.665 57.895 17.98 0.00 0.00 4.40
2176 8066 0.796312 ATTTCACGTGTCGATGGTGC 59.204 50.000 16.51 0.00 0.00 5.01
2183 8073 7.650504 TCCCTATTAGATTTATTTCACGTGTCG 59.349 37.037 16.51 0.00 0.00 4.35
2202 8092 7.092174 TGACCTGGTTTTATATGTGTCCCTATT 60.092 37.037 0.00 0.00 0.00 1.73
2261 8151 9.766277 TTTTTGTTTTCATAAAAAGCATGTCAC 57.234 25.926 0.00 0.00 35.10 3.67
2313 8203 9.975218 AGGTGTGAGTTTCCTTATTATATGTTT 57.025 29.630 0.00 0.00 0.00 2.83
2331 8221 5.039920 TCCATTCATATTCCAGGTGTGAG 57.960 43.478 0.00 0.00 0.00 3.51
2333 8223 7.094075 CCATATTCCATTCATATTCCAGGTGTG 60.094 40.741 0.00 0.00 0.00 3.82
2349 8239 8.821686 TGATTTGTTAACTGTCCATATTCCAT 57.178 30.769 7.22 0.00 0.00 3.41
2362 8252 5.464389 GTGTACGTGACCTGATTTGTTAACT 59.536 40.000 7.22 0.00 0.00 2.24
2363 8253 5.234757 TGTGTACGTGACCTGATTTGTTAAC 59.765 40.000 0.00 0.00 0.00 2.01
2367 8257 3.462483 TGTGTACGTGACCTGATTTGT 57.538 42.857 0.00 0.00 0.00 2.83
2376 8266 4.390909 CCTTTTTCCCTATGTGTACGTGAC 59.609 45.833 0.00 0.00 0.00 3.67
2397 8287 1.972660 GACCTGCCCGTATGCTTCCT 61.973 60.000 0.00 0.00 0.00 3.36
2457 8347 6.551736 ACGCGCTATGATTTTTATGTTTTCT 58.448 32.000 5.73 0.00 0.00 2.52
2459 8349 6.034470 CCAACGCGCTATGATTTTTATGTTTT 59.966 34.615 5.73 0.00 0.00 2.43
2472 8362 1.083489 TCCTTTTCCAACGCGCTATG 58.917 50.000 5.73 2.56 0.00 2.23
2519 8409 0.958091 TGTTTTGTGATTGCCTCCCG 59.042 50.000 0.00 0.00 0.00 5.14
2527 8417 3.250040 GCGTAGGTGAGTGTTTTGTGATT 59.750 43.478 0.00 0.00 0.00 2.57
2529 8419 2.206750 GCGTAGGTGAGTGTTTTGTGA 58.793 47.619 0.00 0.00 0.00 3.58
2534 8424 1.666872 GCGGCGTAGGTGAGTGTTT 60.667 57.895 9.37 0.00 0.00 2.83
2598 8489 2.699954 ACTTCCGCTCGTGAATTTGAT 58.300 42.857 0.00 0.00 0.00 2.57
2626 8517 1.310933 TGCCGTCGAGGAGGTACTTC 61.311 60.000 6.70 0.00 41.55 3.01
2677 8568 2.026449 AGGATTGCCTCTGAGAACCAAG 60.026 50.000 6.17 0.00 42.19 3.61
2725 8616 3.289834 CAACAGCGTTGCCAGCCT 61.290 61.111 0.00 0.00 34.64 4.58
2738 8629 4.322123 CCATGCCAAAATCTGATGTCAACA 60.322 41.667 0.00 0.00 0.00 3.33
2739 8630 4.178540 CCATGCCAAAATCTGATGTCAAC 58.821 43.478 0.00 0.00 0.00 3.18
2740 8631 3.833650 ACCATGCCAAAATCTGATGTCAA 59.166 39.130 0.00 0.00 0.00 3.18
2741 8632 3.433343 ACCATGCCAAAATCTGATGTCA 58.567 40.909 0.00 0.00 0.00 3.58
2742 8633 3.444742 TGACCATGCCAAAATCTGATGTC 59.555 43.478 0.00 0.00 0.00 3.06
2743 8634 3.433343 TGACCATGCCAAAATCTGATGT 58.567 40.909 0.00 0.00 0.00 3.06
2744 8635 4.459390 TTGACCATGCCAAAATCTGATG 57.541 40.909 0.00 0.00 0.00 3.07
2745 8636 5.486735 TTTTGACCATGCCAAAATCTGAT 57.513 34.783 15.67 0.00 38.23 2.90
2746 8637 4.952071 TTTTGACCATGCCAAAATCTGA 57.048 36.364 15.67 0.46 38.23 3.27
2747 8638 4.084433 CGTTTTTGACCATGCCAAAATCTG 60.084 41.667 18.53 12.67 41.39 2.90
2748 8639 4.057432 CGTTTTTGACCATGCCAAAATCT 58.943 39.130 18.53 0.00 41.39 2.40
2749 8640 3.363871 GCGTTTTTGACCATGCCAAAATC 60.364 43.478 18.53 16.81 41.39 2.17
2750 8641 2.547634 GCGTTTTTGACCATGCCAAAAT 59.452 40.909 18.53 0.00 41.39 1.82
2751 8642 1.936547 GCGTTTTTGACCATGCCAAAA 59.063 42.857 15.67 15.67 40.47 2.44
2752 8643 1.134699 TGCGTTTTTGACCATGCCAAA 60.135 42.857 7.22 7.22 0.00 3.28
2753 8644 0.461548 TGCGTTTTTGACCATGCCAA 59.538 45.000 0.00 0.00 0.00 4.52
2754 8645 0.461548 TTGCGTTTTTGACCATGCCA 59.538 45.000 0.00 0.00 0.00 4.92
2755 8646 1.794512 ATTGCGTTTTTGACCATGCC 58.205 45.000 0.00 0.00 0.00 4.40
2756 8647 4.683781 TCTTAATTGCGTTTTTGACCATGC 59.316 37.500 0.00 0.00 0.00 4.06
2757 8648 6.183360 CCATCTTAATTGCGTTTTTGACCATG 60.183 38.462 0.00 0.00 0.00 3.66
2758 8649 5.868801 CCATCTTAATTGCGTTTTTGACCAT 59.131 36.000 0.00 0.00 0.00 3.55
2759 8650 5.226396 CCATCTTAATTGCGTTTTTGACCA 58.774 37.500 0.00 0.00 0.00 4.02
2760 8651 4.091365 GCCATCTTAATTGCGTTTTTGACC 59.909 41.667 0.00 0.00 0.00 4.02
2761 8652 4.091365 GGCCATCTTAATTGCGTTTTTGAC 59.909 41.667 0.00 0.00 0.00 3.18
2762 8653 4.021544 AGGCCATCTTAATTGCGTTTTTGA 60.022 37.500 5.01 0.00 0.00 2.69
2763 8654 4.244862 AGGCCATCTTAATTGCGTTTTTG 58.755 39.130 5.01 0.00 0.00 2.44
2764 8655 4.535526 AGGCCATCTTAATTGCGTTTTT 57.464 36.364 5.01 0.00 0.00 1.94
2765 8656 4.535526 AAGGCCATCTTAATTGCGTTTT 57.464 36.364 5.01 0.00 30.13 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.