Multiple sequence alignment - TraesCS7D01G205400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G205400 chr7D 100.000 2601 0 0 1 2601 163013324 163010724 0.000000e+00 4804
1 TraesCS7D01G205400 chr7D 98.000 700 11 2 1 699 611701767 611702464 0.000000e+00 1212
2 TraesCS7D01G205400 chr7B 96.364 770 28 0 1832 2601 125065647 125064878 0.000000e+00 1267
3 TraesCS7D01G205400 chr7B 93.260 727 37 4 741 1459 125066602 125065880 0.000000e+00 1061
4 TraesCS7D01G205400 chr7B 94.444 342 13 3 364 701 708958216 708957877 2.970000e-144 521
5 TraesCS7D01G205400 chr4D 97.714 700 13 2 1 699 28554861 28555558 0.000000e+00 1201
6 TraesCS7D01G205400 chr2D 95.804 715 23 5 1 712 644213843 644213133 0.000000e+00 1147
7 TraesCS7D01G205400 chr2D 96.372 634 18 3 1 631 190596700 190597331 0.000000e+00 1038
8 TraesCS7D01G205400 chr2D 96.215 634 19 3 1 631 190586586 190587217 0.000000e+00 1033
9 TraesCS7D01G205400 chr2D 96.194 578 17 3 1 575 527525681 527526256 0.000000e+00 941
10 TraesCS7D01G205400 chr2D 79.351 770 143 12 1843 2601 22162303 22161539 6.380000e-146 527
11 TraesCS7D01G205400 chr2D 77.691 771 151 18 1843 2601 619604791 619605552 3.950000e-123 451
12 TraesCS7D01G205400 chr2D 74.609 768 156 27 1855 2595 125344746 125343991 4.210000e-78 302
13 TraesCS7D01G205400 chr7A 94.976 617 31 0 843 1459 163917149 163916533 0.000000e+00 968
14 TraesCS7D01G205400 chr7A 93.434 396 26 0 1832 2227 163916307 163915912 2.880000e-164 588
15 TraesCS7D01G205400 chr7A 81.114 736 136 1 1869 2601 46911795 46911060 1.040000e-163 586
16 TraesCS7D01G205400 chr5B 89.388 735 43 13 1 703 505569118 505569849 0.000000e+00 893
17 TraesCS7D01G205400 chr5A 86.950 705 81 7 1 699 491051640 491052339 0.000000e+00 782
18 TraesCS7D01G205400 chr4A 86.901 710 75 12 1 699 26321764 26321062 0.000000e+00 780
19 TraesCS7D01G205400 chr5D 86.319 709 68 14 2 701 44605476 44606164 0.000000e+00 745
20 TraesCS7D01G205400 chr2A 80.315 762 136 12 1850 2601 24003239 24002482 4.860000e-157 564
21 TraesCS7D01G205400 chr2A 84.889 450 58 8 256 699 725593780 725594225 1.840000e-121 446
22 TraesCS7D01G205400 chr2A 74.603 756 159 27 1855 2595 131712219 131711482 4.210000e-78 302
23 TraesCS7D01G205400 chr2B 95.808 334 11 3 364 694 710044242 710044575 1.060000e-148 536
24 TraesCS7D01G205400 chr2B 77.633 769 155 14 1843 2601 758922646 758921885 3.950000e-123 451
25 TraesCS7D01G205400 chr2B 77.415 766 153 16 1843 2595 759175528 759176286 3.070000e-119 438
26 TraesCS7D01G205400 chr2B 75.164 761 154 23 1860 2595 178731911 178731161 2.500000e-85 326
27 TraesCS7D01G205400 chr1D 79.381 776 133 18 1842 2595 476793626 476794396 2.970000e-144 521


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G205400 chr7D 163010724 163013324 2600 True 4804 4804 100.000 1 2601 1 chr7D.!!$R1 2600
1 TraesCS7D01G205400 chr7D 611701767 611702464 697 False 1212 1212 98.000 1 699 1 chr7D.!!$F1 698
2 TraesCS7D01G205400 chr7B 125064878 125066602 1724 True 1164 1267 94.812 741 2601 2 chr7B.!!$R2 1860
3 TraesCS7D01G205400 chr4D 28554861 28555558 697 False 1201 1201 97.714 1 699 1 chr4D.!!$F1 698
4 TraesCS7D01G205400 chr2D 644213133 644213843 710 True 1147 1147 95.804 1 712 1 chr2D.!!$R3 711
5 TraesCS7D01G205400 chr2D 190596700 190597331 631 False 1038 1038 96.372 1 631 1 chr2D.!!$F2 630
6 TraesCS7D01G205400 chr2D 190586586 190587217 631 False 1033 1033 96.215 1 631 1 chr2D.!!$F1 630
7 TraesCS7D01G205400 chr2D 527525681 527526256 575 False 941 941 96.194 1 575 1 chr2D.!!$F3 574
8 TraesCS7D01G205400 chr2D 22161539 22162303 764 True 527 527 79.351 1843 2601 1 chr2D.!!$R1 758
9 TraesCS7D01G205400 chr2D 619604791 619605552 761 False 451 451 77.691 1843 2601 1 chr2D.!!$F4 758
10 TraesCS7D01G205400 chr2D 125343991 125344746 755 True 302 302 74.609 1855 2595 1 chr2D.!!$R2 740
11 TraesCS7D01G205400 chr7A 163915912 163917149 1237 True 778 968 94.205 843 2227 2 chr7A.!!$R2 1384
12 TraesCS7D01G205400 chr7A 46911060 46911795 735 True 586 586 81.114 1869 2601 1 chr7A.!!$R1 732
13 TraesCS7D01G205400 chr5B 505569118 505569849 731 False 893 893 89.388 1 703 1 chr5B.!!$F1 702
14 TraesCS7D01G205400 chr5A 491051640 491052339 699 False 782 782 86.950 1 699 1 chr5A.!!$F1 698
15 TraesCS7D01G205400 chr4A 26321062 26321764 702 True 780 780 86.901 1 699 1 chr4A.!!$R1 698
16 TraesCS7D01G205400 chr5D 44605476 44606164 688 False 745 745 86.319 2 701 1 chr5D.!!$F1 699
17 TraesCS7D01G205400 chr2A 24002482 24003239 757 True 564 564 80.315 1850 2601 1 chr2A.!!$R1 751
18 TraesCS7D01G205400 chr2A 131711482 131712219 737 True 302 302 74.603 1855 2595 1 chr2A.!!$R2 740
19 TraesCS7D01G205400 chr2B 758921885 758922646 761 True 451 451 77.633 1843 2601 1 chr2B.!!$R2 758
20 TraesCS7D01G205400 chr2B 759175528 759176286 758 False 438 438 77.415 1843 2595 1 chr2B.!!$F2 752
21 TraesCS7D01G205400 chr2B 178731161 178731911 750 True 326 326 75.164 1860 2595 1 chr2B.!!$R1 735
22 TraesCS7D01G205400 chr1D 476793626 476794396 770 False 521 521 79.381 1842 2595 1 chr1D.!!$F1 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 891 0.100503 GAGTCGCTCCTTCTCTCTGC 59.899 60.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2469 2566 0.107831 ACCAGTGCGTGCCTTTTCTA 59.892 50.0 0.0 0.0 0.0 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 159 3.091545 CACTGTGGTCCATTTTAGCCAT 58.908 45.455 0.00 0.00 33.20 4.40
281 286 6.319911 TCAAACCAATGACAGTGTATTGTTGA 59.680 34.615 17.03 16.82 32.02 3.18
389 399 3.864686 CCATGCACACCTACGCGC 61.865 66.667 5.73 0.00 0.00 6.86
703 746 7.083858 CACCAGTGTTGTATTTACCTCAATTG 58.916 38.462 0.00 0.00 0.00 2.32
705 748 7.504238 ACCAGTGTTGTATTTACCTCAATTGAA 59.496 33.333 9.88 0.00 0.00 2.69
706 749 8.356657 CCAGTGTTGTATTTACCTCAATTGAAA 58.643 33.333 9.88 1.01 0.00 2.69
707 750 9.912634 CAGTGTTGTATTTACCTCAATTGAAAT 57.087 29.630 9.88 8.72 0.00 2.17
708 751 9.912634 AGTGTTGTATTTACCTCAATTGAAATG 57.087 29.630 9.88 3.85 0.00 2.32
709 752 8.647226 GTGTTGTATTTACCTCAATTGAAATGC 58.353 33.333 9.88 10.05 0.00 3.56
710 753 8.363390 TGTTGTATTTACCTCAATTGAAATGCA 58.637 29.630 9.88 12.35 33.77 3.96
711 754 9.369904 GTTGTATTTACCTCAATTGAAATGCAT 57.630 29.630 16.87 0.00 35.02 3.96
712 755 8.929827 TGTATTTACCTCAATTGAAATGCATG 57.070 30.769 9.88 0.00 31.64 4.06
713 756 8.530311 TGTATTTACCTCAATTGAAATGCATGT 58.470 29.630 9.88 0.00 31.64 3.21
714 757 7.837202 ATTTACCTCAATTGAAATGCATGTG 57.163 32.000 9.88 0.00 0.00 3.21
715 758 4.196626 ACCTCAATTGAAATGCATGTGG 57.803 40.909 9.88 6.34 0.00 4.17
716 759 3.579586 ACCTCAATTGAAATGCATGTGGT 59.420 39.130 9.88 6.98 31.74 4.16
717 760 4.040706 ACCTCAATTGAAATGCATGTGGTT 59.959 37.500 9.88 0.00 32.33 3.67
718 761 5.245751 ACCTCAATTGAAATGCATGTGGTTA 59.754 36.000 9.88 0.00 32.33 2.85
719 762 5.808540 CCTCAATTGAAATGCATGTGGTTAG 59.191 40.000 9.88 0.00 0.00 2.34
720 763 6.343716 TCAATTGAAATGCATGTGGTTAGT 57.656 33.333 5.45 0.00 0.00 2.24
721 764 6.157904 TCAATTGAAATGCATGTGGTTAGTG 58.842 36.000 5.45 0.00 0.00 2.74
722 765 5.726980 ATTGAAATGCATGTGGTTAGTGT 57.273 34.783 0.00 0.00 0.00 3.55
723 766 5.528043 TTGAAATGCATGTGGTTAGTGTT 57.472 34.783 0.00 0.00 0.00 3.32
724 767 4.869215 TGAAATGCATGTGGTTAGTGTTG 58.131 39.130 0.00 0.00 0.00 3.33
725 768 3.940209 AATGCATGTGGTTAGTGTTGG 57.060 42.857 0.00 0.00 0.00 3.77
726 769 2.647683 TGCATGTGGTTAGTGTTGGA 57.352 45.000 0.00 0.00 0.00 3.53
727 770 3.153369 TGCATGTGGTTAGTGTTGGAT 57.847 42.857 0.00 0.00 0.00 3.41
728 771 2.819019 TGCATGTGGTTAGTGTTGGATG 59.181 45.455 0.00 0.00 0.00 3.51
729 772 2.819608 GCATGTGGTTAGTGTTGGATGT 59.180 45.455 0.00 0.00 0.00 3.06
730 773 3.119849 GCATGTGGTTAGTGTTGGATGTC 60.120 47.826 0.00 0.00 0.00 3.06
731 774 4.326826 CATGTGGTTAGTGTTGGATGTCT 58.673 43.478 0.00 0.00 0.00 3.41
732 775 5.487433 CATGTGGTTAGTGTTGGATGTCTA 58.513 41.667 0.00 0.00 0.00 2.59
733 776 5.755409 TGTGGTTAGTGTTGGATGTCTAT 57.245 39.130 0.00 0.00 0.00 1.98
734 777 5.730550 TGTGGTTAGTGTTGGATGTCTATC 58.269 41.667 0.00 0.00 0.00 2.08
735 778 5.483937 TGTGGTTAGTGTTGGATGTCTATCT 59.516 40.000 0.00 0.00 33.68 1.98
736 779 6.043411 GTGGTTAGTGTTGGATGTCTATCTC 58.957 44.000 0.00 0.00 33.68 2.75
737 780 5.958380 TGGTTAGTGTTGGATGTCTATCTCT 59.042 40.000 0.00 0.00 33.68 3.10
738 781 6.127338 TGGTTAGTGTTGGATGTCTATCTCTG 60.127 42.308 0.00 0.00 33.68 3.35
739 782 6.096987 GGTTAGTGTTGGATGTCTATCTCTGA 59.903 42.308 0.00 0.00 33.68 3.27
772 815 2.034305 ACTGTTCCACACGAGTACAGAC 59.966 50.000 17.61 2.36 36.06 3.51
809 852 1.558756 ACTCCAGAAGCTTCTCCCATG 59.441 52.381 26.18 15.04 34.74 3.66
846 889 2.775351 CGAGTCGCTCCTTCTCTCT 58.225 57.895 0.00 0.00 0.00 3.10
848 891 0.100503 GAGTCGCTCCTTCTCTCTGC 59.899 60.000 0.00 0.00 0.00 4.26
903 946 3.428862 GCAAACCCGTCCTGATTTATTGG 60.429 47.826 0.00 0.00 0.00 3.16
938 981 1.544724 TCCTTCGCCATTTTTCCCAG 58.455 50.000 0.00 0.00 0.00 4.45
1002 1053 2.031012 TCAACTGCAGTCCCAGCG 59.969 61.111 21.95 4.99 36.29 5.18
1025 1076 0.825425 CCCATCCGAGCTAGCTCTCA 60.825 60.000 35.36 24.38 40.69 3.27
1066 1117 2.204090 TTCTTCGGGGGAAGCCCT 60.204 61.111 2.01 0.00 44.66 5.19
1096 1147 4.222847 CTCTACGCCCGCCCCTTC 62.223 72.222 0.00 0.00 0.00 3.46
1144 1195 2.041819 GAGACCCCGACCTCCCAT 60.042 66.667 0.00 0.00 0.00 4.00
1153 1204 3.083997 ACCTCCCATGTCCTCCGC 61.084 66.667 0.00 0.00 0.00 5.54
1255 1306 0.253394 AGGAGAAGGGAAAGGAGGGG 60.253 60.000 0.00 0.00 0.00 4.79
1450 1501 2.817396 GCGGTCTCCAGCAAGCTC 60.817 66.667 0.00 0.00 0.00 4.09
1454 1505 0.390998 GGTCTCCAGCAAGCTCTGAC 60.391 60.000 4.03 1.22 36.19 3.51
1459 1510 4.749310 AGCAAGCTCTGACGCCGG 62.749 66.667 0.00 0.00 0.00 6.13
1460 1511 4.742201 GCAAGCTCTGACGCCGGA 62.742 66.667 5.05 0.00 0.00 5.14
1461 1512 2.811317 CAAGCTCTGACGCCGGAC 60.811 66.667 5.05 0.00 0.00 4.79
1463 1514 2.995872 AAGCTCTGACGCCGGACTC 61.996 63.158 5.05 0.00 0.00 3.36
1464 1515 3.444805 GCTCTGACGCCGGACTCT 61.445 66.667 5.05 0.00 0.00 3.24
1465 1516 2.487428 CTCTGACGCCGGACTCTG 59.513 66.667 5.05 2.17 0.00 3.35
1466 1517 2.282251 TCTGACGCCGGACTCTGT 60.282 61.111 5.05 0.00 0.00 3.41
1467 1518 1.867919 CTCTGACGCCGGACTCTGTT 61.868 60.000 5.05 0.00 0.00 3.16
1468 1519 1.006102 CTGACGCCGGACTCTGTTT 60.006 57.895 5.05 0.00 0.00 2.83
1470 1521 0.892755 TGACGCCGGACTCTGTTTAT 59.107 50.000 5.05 0.00 0.00 1.40
1472 1523 2.289195 TGACGCCGGACTCTGTTTATTT 60.289 45.455 5.05 0.00 0.00 1.40
1474 1525 1.202031 CGCCGGACTCTGTTTATTTGC 60.202 52.381 5.05 0.00 0.00 3.68
1476 1527 2.096013 GCCGGACTCTGTTTATTTGCTC 59.904 50.000 5.05 0.00 0.00 4.26
1477 1528 3.334691 CCGGACTCTGTTTATTTGCTCA 58.665 45.455 0.00 0.00 0.00 4.26
1479 1530 4.215399 CCGGACTCTGTTTATTTGCTCAAA 59.785 41.667 0.00 0.00 34.46 2.69
1480 1531 5.278266 CCGGACTCTGTTTATTTGCTCAAAA 60.278 40.000 0.00 0.00 33.56 2.44
1508 1559 6.741724 AGAAATCTGGTATGTTTATGGGGTT 58.258 36.000 0.00 0.00 0.00 4.11
1509 1560 6.607198 AGAAATCTGGTATGTTTATGGGGTTG 59.393 38.462 0.00 0.00 0.00 3.77
1510 1561 4.243793 TCTGGTATGTTTATGGGGTTGG 57.756 45.455 0.00 0.00 0.00 3.77
1513 1564 3.333980 TGGTATGTTTATGGGGTTGGTGA 59.666 43.478 0.00 0.00 0.00 4.02
1514 1565 4.017037 TGGTATGTTTATGGGGTTGGTGAT 60.017 41.667 0.00 0.00 0.00 3.06
1515 1566 4.340950 GGTATGTTTATGGGGTTGGTGATG 59.659 45.833 0.00 0.00 0.00 3.07
1516 1567 3.534357 TGTTTATGGGGTTGGTGATGT 57.466 42.857 0.00 0.00 0.00 3.06
1517 1568 3.161067 TGTTTATGGGGTTGGTGATGTG 58.839 45.455 0.00 0.00 0.00 3.21
1519 1570 2.799126 TATGGGGTTGGTGATGTGTC 57.201 50.000 0.00 0.00 0.00 3.67
1520 1571 0.776810 ATGGGGTTGGTGATGTGTCA 59.223 50.000 0.00 0.00 0.00 3.58
1521 1572 0.553333 TGGGGTTGGTGATGTGTCAA 59.447 50.000 0.00 0.00 35.80 3.18
1522 1573 0.958822 GGGGTTGGTGATGTGTCAAC 59.041 55.000 0.00 0.00 42.59 3.18
1524 1575 1.305201 GGTTGGTGATGTGTCAACGT 58.695 50.000 0.00 0.00 45.31 3.99
1525 1576 2.485903 GGTTGGTGATGTGTCAACGTA 58.514 47.619 0.00 0.00 45.31 3.57
1526 1577 2.873472 GGTTGGTGATGTGTCAACGTAA 59.127 45.455 0.00 0.00 45.31 3.18
1527 1578 3.312973 GGTTGGTGATGTGTCAACGTAAA 59.687 43.478 0.00 0.00 45.31 2.01
1530 1581 3.430556 TGGTGATGTGTCAACGTAAATCG 59.569 43.478 0.00 0.00 45.31 3.34
1531 1582 3.676172 GGTGATGTGTCAACGTAAATCGA 59.324 43.478 0.00 0.00 43.23 3.59
1532 1583 4.433805 GGTGATGTGTCAACGTAAATCGAC 60.434 45.833 0.00 0.00 43.23 4.20
1533 1584 3.676172 TGATGTGTCAACGTAAATCGACC 59.324 43.478 0.00 0.00 42.86 4.79
1539 1590 3.182173 GTCAACGTAAATCGACCGTGAAA 59.818 43.478 0.00 0.00 42.86 2.69
1540 1591 3.426191 TCAACGTAAATCGACCGTGAAAG 59.574 43.478 0.00 0.00 42.86 2.62
1542 1593 3.383761 ACGTAAATCGACCGTGAAAGTT 58.616 40.909 0.00 0.00 42.86 2.66
1543 1594 3.182972 ACGTAAATCGACCGTGAAAGTTG 59.817 43.478 0.00 0.00 42.86 3.16
1544 1595 3.182972 CGTAAATCGACCGTGAAAGTTGT 59.817 43.478 0.00 0.00 42.86 3.32
1546 1597 4.720530 AAATCGACCGTGAAAGTTGTAC 57.279 40.909 0.00 0.00 0.00 2.90
1547 1598 3.655276 ATCGACCGTGAAAGTTGTACT 57.345 42.857 0.00 0.00 0.00 2.73
1550 1610 2.217847 CGACCGTGAAAGTTGTACTGTG 59.782 50.000 0.00 0.00 0.00 3.66
1553 1613 3.807622 ACCGTGAAAGTTGTACTGTGATG 59.192 43.478 0.00 0.00 0.00 3.07
1558 1618 6.364976 CGTGAAAGTTGTACTGTGATGTGATA 59.635 38.462 0.00 0.00 0.00 2.15
1565 1625 8.830580 AGTTGTACTGTGATGTGATAAATATGC 58.169 33.333 0.00 0.00 0.00 3.14
1566 1626 7.728847 TGTACTGTGATGTGATAAATATGCC 57.271 36.000 0.00 0.00 0.00 4.40
1567 1627 7.278875 TGTACTGTGATGTGATAAATATGCCA 58.721 34.615 0.00 0.00 0.00 4.92
1568 1628 7.772757 TGTACTGTGATGTGATAAATATGCCAA 59.227 33.333 0.00 0.00 0.00 4.52
1570 1630 6.075762 TGTGATGTGATAAATATGCCAAGC 57.924 37.500 0.00 0.00 0.00 4.01
1571 1631 5.593502 TGTGATGTGATAAATATGCCAAGCA 59.406 36.000 0.00 0.00 44.86 3.91
1574 1634 4.209538 TGTGATAAATATGCCAAGCAGCT 58.790 39.130 0.00 0.00 43.65 4.24
1576 1636 4.037208 GTGATAAATATGCCAAGCAGCTGT 59.963 41.667 16.64 0.00 43.65 4.40
1577 1637 2.953466 AAATATGCCAAGCAGCTGTG 57.047 45.000 16.64 6.46 43.65 3.66
1578 1638 2.133281 AATATGCCAAGCAGCTGTGA 57.867 45.000 16.64 0.00 43.65 3.58
1579 1639 2.133281 ATATGCCAAGCAGCTGTGAA 57.867 45.000 16.64 0.00 43.65 3.18
1580 1640 2.133281 TATGCCAAGCAGCTGTGAAT 57.867 45.000 16.64 6.64 43.65 2.57
1581 1641 2.133281 ATGCCAAGCAGCTGTGAATA 57.867 45.000 16.64 0.00 43.65 1.75
1582 1642 1.908344 TGCCAAGCAGCTGTGAATAA 58.092 45.000 16.64 0.00 33.32 1.40
1583 1643 2.449464 TGCCAAGCAGCTGTGAATAAT 58.551 42.857 16.64 0.00 33.32 1.28
1584 1644 3.619419 TGCCAAGCAGCTGTGAATAATA 58.381 40.909 16.64 0.00 33.32 0.98
1585 1645 4.015764 TGCCAAGCAGCTGTGAATAATAA 58.984 39.130 16.64 0.00 33.32 1.40
1586 1646 4.462132 TGCCAAGCAGCTGTGAATAATAAA 59.538 37.500 16.64 0.00 33.32 1.40
1587 1647 4.800471 GCCAAGCAGCTGTGAATAATAAAC 59.200 41.667 16.64 0.00 0.00 2.01
1588 1648 5.393461 GCCAAGCAGCTGTGAATAATAAACT 60.393 40.000 16.64 0.00 0.00 2.66
1589 1649 6.183360 GCCAAGCAGCTGTGAATAATAAACTA 60.183 38.462 16.64 0.00 0.00 2.24
1590 1650 7.412853 CCAAGCAGCTGTGAATAATAAACTAG 58.587 38.462 16.64 0.00 0.00 2.57
1592 1652 9.098355 CAAGCAGCTGTGAATAATAAACTAGTA 57.902 33.333 16.64 0.00 0.00 1.82
1593 1653 8.879342 AGCAGCTGTGAATAATAAACTAGTAG 57.121 34.615 16.64 0.00 0.00 2.57
1594 1654 7.439655 AGCAGCTGTGAATAATAAACTAGTAGC 59.560 37.037 16.64 0.00 0.00 3.58
1595 1655 7.307455 GCAGCTGTGAATAATAAACTAGTAGCC 60.307 40.741 16.64 0.00 0.00 3.93
1597 1657 6.700520 GCTGTGAATAATAAACTAGTAGCCGT 59.299 38.462 0.00 0.00 0.00 5.68
1598 1658 7.306632 GCTGTGAATAATAAACTAGTAGCCGTG 60.307 40.741 0.00 0.00 0.00 4.94
1599 1659 7.774134 TGTGAATAATAAACTAGTAGCCGTGA 58.226 34.615 0.00 0.00 0.00 4.35
1600 1660 8.252417 TGTGAATAATAAACTAGTAGCCGTGAA 58.748 33.333 0.00 0.00 0.00 3.18
1601 1661 9.257651 GTGAATAATAAACTAGTAGCCGTGAAT 57.742 33.333 0.00 0.00 0.00 2.57
1602 1662 9.256477 TGAATAATAAACTAGTAGCCGTGAATG 57.744 33.333 0.00 0.00 0.00 2.67
1603 1663 9.472361 GAATAATAAACTAGTAGCCGTGAATGA 57.528 33.333 0.00 0.00 0.00 2.57
1604 1664 9.998106 AATAATAAACTAGTAGCCGTGAATGAT 57.002 29.630 0.00 0.00 0.00 2.45
1605 1665 9.998106 ATAATAAACTAGTAGCCGTGAATGATT 57.002 29.630 0.00 0.00 0.00 2.57
1606 1666 8.732746 AATAAACTAGTAGCCGTGAATGATTT 57.267 30.769 0.00 0.00 0.00 2.17
1607 1667 8.732746 ATAAACTAGTAGCCGTGAATGATTTT 57.267 30.769 0.00 0.00 0.00 1.82
1608 1668 9.826574 ATAAACTAGTAGCCGTGAATGATTTTA 57.173 29.630 0.00 0.00 0.00 1.52
1609 1669 7.535489 AACTAGTAGCCGTGAATGATTTTAC 57.465 36.000 0.00 0.00 0.00 2.01
1610 1670 6.875076 ACTAGTAGCCGTGAATGATTTTACT 58.125 36.000 0.00 0.00 0.00 2.24
1611 1671 6.757010 ACTAGTAGCCGTGAATGATTTTACTG 59.243 38.462 0.00 0.00 0.00 2.74
1612 1672 5.488341 AGTAGCCGTGAATGATTTTACTGT 58.512 37.500 0.00 0.00 0.00 3.55
1613 1673 6.636705 AGTAGCCGTGAATGATTTTACTGTA 58.363 36.000 0.00 0.00 0.00 2.74
1614 1674 7.101054 AGTAGCCGTGAATGATTTTACTGTAA 58.899 34.615 0.00 0.00 0.00 2.41
1615 1675 6.811253 AGCCGTGAATGATTTTACTGTAAA 57.189 33.333 8.84 8.84 0.00 2.01
1616 1676 7.209471 AGCCGTGAATGATTTTACTGTAAAA 57.791 32.000 23.43 23.43 41.38 1.52
1618 1678 8.952278 AGCCGTGAATGATTTTACTGTAAAATA 58.048 29.630 28.81 20.05 45.52 1.40
1619 1679 9.006215 GCCGTGAATGATTTTACTGTAAAATAC 57.994 33.333 28.81 22.74 45.52 1.89
1640 1700 8.786937 AATACAAATACAAATCGTGATGATGC 57.213 30.769 0.00 0.00 37.39 3.91
1641 1701 6.441093 ACAAATACAAATCGTGATGATGCT 57.559 33.333 0.00 0.00 37.39 3.79
1642 1702 6.260377 ACAAATACAAATCGTGATGATGCTG 58.740 36.000 0.00 0.00 37.39 4.41
1643 1703 6.127925 ACAAATACAAATCGTGATGATGCTGT 60.128 34.615 7.52 7.52 37.39 4.40
1644 1704 3.752412 ACAAATCGTGATGATGCTGTG 57.248 42.857 2.79 0.00 37.39 3.66
1645 1705 2.159476 ACAAATCGTGATGATGCTGTGC 60.159 45.455 2.79 0.00 37.39 4.57
1646 1706 2.034104 AATCGTGATGATGCTGTGCT 57.966 45.000 0.00 0.00 37.39 4.40
1647 1707 1.296727 ATCGTGATGATGCTGTGCTG 58.703 50.000 0.00 0.00 35.45 4.41
1648 1708 0.247185 TCGTGATGATGCTGTGCTGA 59.753 50.000 0.00 0.00 0.00 4.26
1649 1709 0.651031 CGTGATGATGCTGTGCTGAG 59.349 55.000 0.00 0.00 0.00 3.35
1650 1710 1.015109 GTGATGATGCTGTGCTGAGG 58.985 55.000 0.00 0.00 0.00 3.86
1651 1711 0.906775 TGATGATGCTGTGCTGAGGA 59.093 50.000 0.00 0.00 0.00 3.71
1653 1713 0.461516 ATGATGCTGTGCTGAGGACG 60.462 55.000 0.00 0.00 0.00 4.79
1659 1719 1.914634 CTGTGCTGAGGACGTATGAC 58.085 55.000 0.00 0.00 0.00 3.06
1662 1722 2.263077 GTGCTGAGGACGTATGACAAG 58.737 52.381 0.00 0.00 0.00 3.16
1667 1727 2.164422 TGAGGACGTATGACAAGCTGAG 59.836 50.000 0.00 0.00 0.00 3.35
1668 1728 1.478510 AGGACGTATGACAAGCTGAGG 59.521 52.381 0.00 0.00 0.00 3.86
1669 1729 1.476891 GGACGTATGACAAGCTGAGGA 59.523 52.381 0.00 0.00 0.00 3.71
1676 1736 3.228188 TGACAAGCTGAGGAATTTGGT 57.772 42.857 0.00 0.00 0.00 3.67
1679 1739 5.136828 TGACAAGCTGAGGAATTTGGTTAA 58.863 37.500 0.00 0.00 0.00 2.01
1682 1742 7.094377 TGACAAGCTGAGGAATTTGGTTAATAC 60.094 37.037 0.00 0.00 0.00 1.89
1684 1744 7.451566 ACAAGCTGAGGAATTTGGTTAATACTT 59.548 33.333 0.00 0.00 0.00 2.24
1686 1746 8.738645 AGCTGAGGAATTTGGTTAATACTTAG 57.261 34.615 0.00 0.00 0.00 2.18
1687 1747 8.329502 AGCTGAGGAATTTGGTTAATACTTAGT 58.670 33.333 0.00 0.00 0.00 2.24
1688 1748 8.398665 GCTGAGGAATTTGGTTAATACTTAGTG 58.601 37.037 0.00 0.00 0.00 2.74
1689 1749 9.667107 CTGAGGAATTTGGTTAATACTTAGTGA 57.333 33.333 0.00 0.00 0.00 3.41
1707 1768 9.950496 ACTTAGTGATGAGTATGACAAAAGAAT 57.050 29.630 0.00 0.00 0.00 2.40
1710 1771 8.853077 AGTGATGAGTATGACAAAAGAATTGA 57.147 30.769 0.00 0.00 0.00 2.57
1711 1772 9.458727 AGTGATGAGTATGACAAAAGAATTGAT 57.541 29.630 0.00 0.00 0.00 2.57
1712 1773 9.713740 GTGATGAGTATGACAAAAGAATTGATC 57.286 33.333 0.00 0.00 0.00 2.92
1733 1794 2.476126 TGGGGCAATGCAGAAATTTG 57.524 45.000 7.79 0.00 0.00 2.32
1734 1795 1.976404 TGGGGCAATGCAGAAATTTGA 59.024 42.857 7.79 0.00 0.00 2.69
1736 1797 3.181447 TGGGGCAATGCAGAAATTTGAAA 60.181 39.130 7.79 0.00 0.00 2.69
1737 1798 3.437741 GGGGCAATGCAGAAATTTGAAAG 59.562 43.478 7.79 0.00 0.00 2.62
1738 1799 4.317488 GGGCAATGCAGAAATTTGAAAGA 58.683 39.130 7.79 0.00 0.00 2.52
1739 1800 4.152938 GGGCAATGCAGAAATTTGAAAGAC 59.847 41.667 7.79 0.00 0.00 3.01
1740 1801 4.152938 GGCAATGCAGAAATTTGAAAGACC 59.847 41.667 7.79 0.00 0.00 3.85
1741 1802 4.751098 GCAATGCAGAAATTTGAAAGACCA 59.249 37.500 0.00 0.00 0.00 4.02
1742 1803 5.410439 GCAATGCAGAAATTTGAAAGACCAT 59.590 36.000 0.00 0.00 0.00 3.55
1743 1804 6.072893 GCAATGCAGAAATTTGAAAGACCATT 60.073 34.615 0.00 0.00 0.00 3.16
1744 1805 7.520937 GCAATGCAGAAATTTGAAAGACCATTT 60.521 33.333 0.00 0.00 0.00 2.32
1745 1806 8.347035 CAATGCAGAAATTTGAAAGACCATTTT 58.653 29.630 0.00 0.00 0.00 1.82
1746 1807 7.249186 TGCAGAAATTTGAAAGACCATTTTG 57.751 32.000 0.00 0.00 0.00 2.44
1747 1808 7.046652 TGCAGAAATTTGAAAGACCATTTTGA 58.953 30.769 0.00 0.00 0.00 2.69
1748 1809 7.225145 TGCAGAAATTTGAAAGACCATTTTGAG 59.775 33.333 0.00 0.00 0.00 3.02
1749 1810 7.570161 CAGAAATTTGAAAGACCATTTTGAGC 58.430 34.615 0.00 0.00 0.00 4.26
1750 1811 7.440255 CAGAAATTTGAAAGACCATTTTGAGCT 59.560 33.333 0.00 0.00 0.00 4.09
1751 1812 7.989170 AGAAATTTGAAAGACCATTTTGAGCTT 59.011 29.630 0.00 0.00 0.00 3.74
1752 1813 7.486802 AATTTGAAAGACCATTTTGAGCTTG 57.513 32.000 0.00 0.00 0.00 4.01
1753 1814 3.981211 TGAAAGACCATTTTGAGCTTGC 58.019 40.909 0.00 0.00 0.00 4.01
1754 1815 3.638160 TGAAAGACCATTTTGAGCTTGCT 59.362 39.130 0.00 0.00 0.00 3.91
1755 1816 4.099881 TGAAAGACCATTTTGAGCTTGCTT 59.900 37.500 0.00 0.00 0.00 3.91
1756 1817 5.301551 TGAAAGACCATTTTGAGCTTGCTTA 59.698 36.000 0.00 0.00 0.00 3.09
1757 1818 5.990120 AAGACCATTTTGAGCTTGCTTAT 57.010 34.783 0.00 0.00 0.00 1.73
1758 1819 5.990120 AGACCATTTTGAGCTTGCTTATT 57.010 34.783 0.00 0.00 0.00 1.40
1759 1820 5.958955 AGACCATTTTGAGCTTGCTTATTC 58.041 37.500 0.00 0.00 0.00 1.75
1760 1821 5.713861 AGACCATTTTGAGCTTGCTTATTCT 59.286 36.000 0.00 0.00 0.00 2.40
1761 1822 5.717119 ACCATTTTGAGCTTGCTTATTCTG 58.283 37.500 0.00 0.00 0.00 3.02
1762 1823 5.477984 ACCATTTTGAGCTTGCTTATTCTGA 59.522 36.000 0.00 0.00 0.00 3.27
1763 1824 5.803967 CCATTTTGAGCTTGCTTATTCTGAC 59.196 40.000 0.00 0.00 0.00 3.51
1764 1825 6.384224 CATTTTGAGCTTGCTTATTCTGACA 58.616 36.000 0.00 0.00 0.00 3.58
1765 1826 6.389830 TTTTGAGCTTGCTTATTCTGACAA 57.610 33.333 0.00 0.00 0.00 3.18
1766 1827 6.389830 TTTGAGCTTGCTTATTCTGACAAA 57.610 33.333 0.00 0.00 0.00 2.83
1767 1828 6.579666 TTGAGCTTGCTTATTCTGACAAAT 57.420 33.333 0.00 0.00 0.00 2.32
1768 1829 6.579666 TGAGCTTGCTTATTCTGACAAATT 57.420 33.333 0.00 0.00 0.00 1.82
1769 1830 6.985117 TGAGCTTGCTTATTCTGACAAATTT 58.015 32.000 0.00 0.00 0.00 1.82
1770 1831 6.864685 TGAGCTTGCTTATTCTGACAAATTTG 59.135 34.615 16.67 16.67 0.00 2.32
1771 1832 6.752168 AGCTTGCTTATTCTGACAAATTTGT 58.248 32.000 23.49 23.49 45.65 2.83
1772 1833 7.212274 AGCTTGCTTATTCTGACAAATTTGTT 58.788 30.769 24.02 11.02 42.43 2.83
1773 1834 8.359642 AGCTTGCTTATTCTGACAAATTTGTTA 58.640 29.630 24.02 18.99 42.43 2.41
1774 1835 8.977505 GCTTGCTTATTCTGACAAATTTGTTAA 58.022 29.630 24.02 17.95 42.43 2.01
1776 1837 9.474920 TTGCTTATTCTGACAAATTTGTTAAGG 57.525 29.630 26.15 17.45 42.43 2.69
1777 1838 8.637986 TGCTTATTCTGACAAATTTGTTAAGGT 58.362 29.630 26.15 19.51 42.43 3.50
1778 1839 8.915654 GCTTATTCTGACAAATTTGTTAAGGTG 58.084 33.333 26.15 13.96 42.43 4.00
1779 1840 9.965824 CTTATTCTGACAAATTTGTTAAGGTGT 57.034 29.630 24.02 14.97 42.43 4.16
1782 1843 8.514330 TTCTGACAAATTTGTTAAGGTGTACT 57.486 30.769 24.02 0.00 42.43 2.73
1783 1844 8.514330 TCTGACAAATTTGTTAAGGTGTACTT 57.486 30.769 24.02 0.00 42.43 2.24
1784 1845 9.616156 TCTGACAAATTTGTTAAGGTGTACTTA 57.384 29.630 24.02 5.30 42.43 2.24
1785 1846 9.659830 CTGACAAATTTGTTAAGGTGTACTTAC 57.340 33.333 24.02 7.47 41.24 2.34
1786 1847 9.398538 TGACAAATTTGTTAAGGTGTACTTACT 57.601 29.630 24.02 0.00 41.24 2.24
1810 1871 8.936864 ACTACACTGAAATATAACTTGCTTGAC 58.063 33.333 0.00 0.00 0.00 3.18
1811 1872 7.744087 ACACTGAAATATAACTTGCTTGACA 57.256 32.000 0.00 0.00 0.00 3.58
1812 1873 8.165239 ACACTGAAATATAACTTGCTTGACAA 57.835 30.769 0.00 0.00 36.62 3.18
1813 1874 8.629158 ACACTGAAATATAACTTGCTTGACAAA 58.371 29.630 0.00 0.00 37.96 2.83
1814 1875 9.630098 CACTGAAATATAACTTGCTTGACAAAT 57.370 29.630 0.00 0.00 37.96 2.32
1815 1876 9.846248 ACTGAAATATAACTTGCTTGACAAATC 57.154 29.630 0.00 0.00 37.96 2.17
1816 1877 8.894409 TGAAATATAACTTGCTTGACAAATCG 57.106 30.769 0.00 0.00 37.96 3.34
1817 1878 7.967854 TGAAATATAACTTGCTTGACAAATCGG 59.032 33.333 0.00 0.00 37.96 4.18
1818 1879 2.422276 AACTTGCTTGACAAATCGGC 57.578 45.000 0.00 0.00 37.96 5.54
1819 1880 0.598065 ACTTGCTTGACAAATCGGCC 59.402 50.000 0.00 0.00 37.96 6.13
1820 1881 0.883833 CTTGCTTGACAAATCGGCCT 59.116 50.000 0.00 0.00 37.96 5.19
1821 1882 2.083774 CTTGCTTGACAAATCGGCCTA 58.916 47.619 0.00 0.00 37.96 3.93
1822 1883 1.448985 TGCTTGACAAATCGGCCTAC 58.551 50.000 0.00 0.00 0.00 3.18
1823 1884 1.271108 TGCTTGACAAATCGGCCTACA 60.271 47.619 0.00 0.00 0.00 2.74
1824 1885 2.017049 GCTTGACAAATCGGCCTACAT 58.983 47.619 0.00 0.00 0.00 2.29
1825 1886 3.202906 GCTTGACAAATCGGCCTACATA 58.797 45.455 0.00 0.00 0.00 2.29
1826 1887 3.002348 GCTTGACAAATCGGCCTACATAC 59.998 47.826 0.00 0.00 0.00 2.39
1827 1888 2.816689 TGACAAATCGGCCTACATACG 58.183 47.619 0.00 0.00 0.00 3.06
1828 1889 2.427812 TGACAAATCGGCCTACATACGA 59.572 45.455 0.00 0.00 41.20 3.43
1829 1890 3.119065 TGACAAATCGGCCTACATACGAA 60.119 43.478 0.00 0.00 40.27 3.85
1830 1891 4.056050 GACAAATCGGCCTACATACGAAT 58.944 43.478 0.00 0.00 40.27 3.34
1840 1901 5.234543 GGCCTACATACGAATTTTCTCTGAC 59.765 44.000 0.00 0.00 0.00 3.51
2012 2076 1.553690 CCCGTCCTGTTCACCTCCAT 61.554 60.000 0.00 0.00 0.00 3.41
2167 2231 1.202200 CCTCGTACCTCAAGAAGAGCG 60.202 57.143 0.00 0.00 43.31 5.03
2277 2341 3.509388 GAAGGTGTCGATGAACGGT 57.491 52.632 0.00 0.00 42.82 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 193 2.417239 TGGCGACATCGAATGGTAAAAC 59.583 45.455 5.26 0.00 43.02 2.43
703 746 4.022416 TCCAACACTAACCACATGCATTTC 60.022 41.667 0.00 0.00 0.00 2.17
705 748 3.495331 TCCAACACTAACCACATGCATT 58.505 40.909 0.00 0.00 0.00 3.56
706 749 3.153369 TCCAACACTAACCACATGCAT 57.847 42.857 0.00 0.00 0.00 3.96
707 750 2.647683 TCCAACACTAACCACATGCA 57.352 45.000 0.00 0.00 0.00 3.96
708 751 2.819608 ACATCCAACACTAACCACATGC 59.180 45.455 0.00 0.00 0.00 4.06
709 752 4.326826 AGACATCCAACACTAACCACATG 58.673 43.478 0.00 0.00 0.00 3.21
710 753 4.640771 AGACATCCAACACTAACCACAT 57.359 40.909 0.00 0.00 0.00 3.21
711 754 5.483937 AGATAGACATCCAACACTAACCACA 59.516 40.000 0.00 0.00 0.00 4.17
712 755 5.978814 AGATAGACATCCAACACTAACCAC 58.021 41.667 0.00 0.00 0.00 4.16
713 756 5.958380 AGAGATAGACATCCAACACTAACCA 59.042 40.000 0.00 0.00 0.00 3.67
714 757 6.096987 TCAGAGATAGACATCCAACACTAACC 59.903 42.308 0.00 0.00 0.00 2.85
715 758 6.975772 GTCAGAGATAGACATCCAACACTAAC 59.024 42.308 0.00 0.00 36.06 2.34
716 759 6.663523 TGTCAGAGATAGACATCCAACACTAA 59.336 38.462 0.00 0.00 40.80 2.24
717 760 6.187682 TGTCAGAGATAGACATCCAACACTA 58.812 40.000 0.00 0.00 40.80 2.74
718 761 5.019470 TGTCAGAGATAGACATCCAACACT 58.981 41.667 0.00 0.00 40.80 3.55
719 762 5.330455 TGTCAGAGATAGACATCCAACAC 57.670 43.478 0.00 0.00 40.80 3.32
720 763 4.142071 GCTGTCAGAGATAGACATCCAACA 60.142 45.833 3.32 0.00 44.27 3.33
721 764 4.099266 AGCTGTCAGAGATAGACATCCAAC 59.901 45.833 3.32 0.00 44.27 3.77
722 765 4.099113 CAGCTGTCAGAGATAGACATCCAA 59.901 45.833 5.25 0.00 44.27 3.53
723 766 3.635836 CAGCTGTCAGAGATAGACATCCA 59.364 47.826 5.25 0.00 44.27 3.41
724 767 3.888323 TCAGCTGTCAGAGATAGACATCC 59.112 47.826 14.67 0.00 44.27 3.51
725 768 5.507817 CCTTCAGCTGTCAGAGATAGACATC 60.508 48.000 14.67 0.00 44.27 3.06
726 769 4.341806 CCTTCAGCTGTCAGAGATAGACAT 59.658 45.833 14.67 0.00 44.27 3.06
727 770 3.698539 CCTTCAGCTGTCAGAGATAGACA 59.301 47.826 14.67 0.00 43.23 3.41
728 771 3.951037 TCCTTCAGCTGTCAGAGATAGAC 59.049 47.826 14.67 0.00 36.55 2.59
729 772 4.242336 TCCTTCAGCTGTCAGAGATAGA 57.758 45.455 14.67 1.19 0.00 1.98
730 773 4.402155 AGTTCCTTCAGCTGTCAGAGATAG 59.598 45.833 14.67 0.00 0.00 2.08
731 774 4.159321 CAGTTCCTTCAGCTGTCAGAGATA 59.841 45.833 14.67 0.00 0.00 1.98
732 775 3.055963 CAGTTCCTTCAGCTGTCAGAGAT 60.056 47.826 14.67 0.00 0.00 2.75
733 776 2.298446 CAGTTCCTTCAGCTGTCAGAGA 59.702 50.000 14.67 7.91 0.00 3.10
734 777 2.036992 ACAGTTCCTTCAGCTGTCAGAG 59.963 50.000 14.67 7.76 38.96 3.35
735 778 2.042464 ACAGTTCCTTCAGCTGTCAGA 58.958 47.619 14.67 5.93 38.96 3.27
736 779 2.540265 ACAGTTCCTTCAGCTGTCAG 57.460 50.000 14.67 10.91 38.96 3.51
737 780 2.485479 GGAACAGTTCCTTCAGCTGTCA 60.485 50.000 23.40 0.52 46.57 3.58
738 781 2.147150 GGAACAGTTCCTTCAGCTGTC 58.853 52.381 23.40 0.00 46.57 3.51
739 782 2.262423 GGAACAGTTCCTTCAGCTGT 57.738 50.000 23.40 0.00 46.57 4.40
762 805 6.918022 TGTATGCTTTGATATGTCTGTACTCG 59.082 38.462 0.00 0.00 0.00 4.18
772 815 8.837788 TTCTGGAGTATGTATGCTTTGATATG 57.162 34.615 0.00 0.00 0.00 1.78
809 852 2.325761 CGCTGGATAATGGCGTAGTAC 58.674 52.381 0.00 0.00 43.28 2.73
838 881 1.063972 CGAGAGGCGCAGAGAGAAG 59.936 63.158 10.83 0.00 0.00 2.85
839 882 0.960861 TTCGAGAGGCGCAGAGAGAA 60.961 55.000 10.83 6.23 40.61 2.87
846 889 2.184322 GATGGTTCGAGAGGCGCA 59.816 61.111 10.83 0.00 40.61 6.09
889 932 2.452600 TGGGGCCAATAAATCAGGAC 57.547 50.000 4.39 0.00 0.00 3.85
903 946 1.749258 GGAACTGGAACGATGGGGC 60.749 63.158 0.00 0.00 0.00 5.80
960 1003 1.288752 CACGGTTGGGAATTGGTGC 59.711 57.895 0.00 0.00 0.00 5.01
1002 1053 2.873525 GCTAGCTCGGATGGGGTCC 61.874 68.421 7.70 0.00 44.10 4.46
1005 1056 1.531739 GAGAGCTAGCTCGGATGGGG 61.532 65.000 33.31 0.00 46.90 4.96
1066 1117 1.811860 GTAGAGTAGCCGCCGGAAA 59.188 57.895 7.68 0.00 0.00 3.13
1144 1195 1.080093 GACGTTGATGCGGAGGACA 60.080 57.895 0.00 0.00 35.98 4.02
1168 1219 3.934391 GACGTCGTCCTTGCCCAGG 62.934 68.421 14.60 0.00 45.64 4.45
1255 1306 3.069318 ACCGCCTCCTCCTCGTTC 61.069 66.667 0.00 0.00 0.00 3.95
1450 1501 0.242825 TAAACAGAGTCCGGCGTCAG 59.757 55.000 6.01 0.00 0.00 3.51
1454 1505 1.202031 GCAAATAAACAGAGTCCGGCG 60.202 52.381 0.00 0.00 0.00 6.46
1480 1531 9.367160 CCCCATAAACATACCAGATTTCTATTT 57.633 33.333 0.00 0.00 0.00 1.40
1485 1536 6.183360 CCAACCCCATAAACATACCAGATTTC 60.183 42.308 0.00 0.00 0.00 2.17
1486 1537 5.660864 CCAACCCCATAAACATACCAGATTT 59.339 40.000 0.00 0.00 0.00 2.17
1487 1538 5.208121 CCAACCCCATAAACATACCAGATT 58.792 41.667 0.00 0.00 0.00 2.40
1488 1539 4.231890 ACCAACCCCATAAACATACCAGAT 59.768 41.667 0.00 0.00 0.00 2.90
1490 1541 3.699038 CACCAACCCCATAAACATACCAG 59.301 47.826 0.00 0.00 0.00 4.00
1491 1542 3.333980 TCACCAACCCCATAAACATACCA 59.666 43.478 0.00 0.00 0.00 3.25
1492 1543 3.970842 TCACCAACCCCATAAACATACC 58.029 45.455 0.00 0.00 0.00 2.73
1494 1545 4.952957 CACATCACCAACCCCATAAACATA 59.047 41.667 0.00 0.00 0.00 2.29
1495 1546 3.768757 CACATCACCAACCCCATAAACAT 59.231 43.478 0.00 0.00 0.00 2.71
1496 1547 3.161067 CACATCACCAACCCCATAAACA 58.839 45.455 0.00 0.00 0.00 2.83
1497 1548 3.161866 ACACATCACCAACCCCATAAAC 58.838 45.455 0.00 0.00 0.00 2.01
1498 1549 3.181428 TGACACATCACCAACCCCATAAA 60.181 43.478 0.00 0.00 0.00 1.40
1500 1551 1.988846 TGACACATCACCAACCCCATA 59.011 47.619 0.00 0.00 0.00 2.74
1501 1552 0.776810 TGACACATCACCAACCCCAT 59.223 50.000 0.00 0.00 0.00 4.00
1502 1553 0.553333 TTGACACATCACCAACCCCA 59.447 50.000 0.00 0.00 33.38 4.96
1503 1554 0.958822 GTTGACACATCACCAACCCC 59.041 55.000 0.00 0.00 35.43 4.95
1505 1556 1.305201 ACGTTGACACATCACCAACC 58.695 50.000 0.00 0.00 37.47 3.77
1508 1559 3.430556 CGATTTACGTTGACACATCACCA 59.569 43.478 0.00 0.00 33.38 4.17
1509 1560 3.676172 TCGATTTACGTTGACACATCACC 59.324 43.478 0.00 0.00 43.13 4.02
1510 1561 4.433805 GGTCGATTTACGTTGACACATCAC 60.434 45.833 0.00 0.00 43.13 3.06
1513 1564 2.664568 CGGTCGATTTACGTTGACACAT 59.335 45.455 0.00 0.00 43.13 3.21
1514 1565 2.052891 CGGTCGATTTACGTTGACACA 58.947 47.619 0.00 0.00 43.13 3.72
1515 1566 2.053627 ACGGTCGATTTACGTTGACAC 58.946 47.619 0.00 0.00 43.13 3.67
1516 1567 2.052891 CACGGTCGATTTACGTTGACA 58.947 47.619 0.00 0.00 43.13 3.58
1517 1568 2.318578 TCACGGTCGATTTACGTTGAC 58.681 47.619 0.00 0.00 43.13 3.18
1519 1570 3.182972 ACTTTCACGGTCGATTTACGTTG 59.817 43.478 0.00 2.88 43.13 4.10
1520 1571 3.383761 ACTTTCACGGTCGATTTACGTT 58.616 40.909 0.00 0.00 43.13 3.99
1521 1572 3.017265 ACTTTCACGGTCGATTTACGT 57.983 42.857 0.00 0.00 43.13 3.57
1522 1573 3.182972 ACAACTTTCACGGTCGATTTACG 59.817 43.478 0.00 0.00 44.09 3.18
1524 1575 5.403166 CAGTACAACTTTCACGGTCGATTTA 59.597 40.000 0.00 0.00 0.00 1.40
1525 1576 4.210537 CAGTACAACTTTCACGGTCGATTT 59.789 41.667 0.00 0.00 0.00 2.17
1526 1577 3.739300 CAGTACAACTTTCACGGTCGATT 59.261 43.478 0.00 0.00 0.00 3.34
1527 1578 3.243636 ACAGTACAACTTTCACGGTCGAT 60.244 43.478 0.00 0.00 0.00 3.59
1530 1581 3.450578 TCACAGTACAACTTTCACGGTC 58.549 45.455 0.00 0.00 0.00 4.79
1531 1582 3.530265 TCACAGTACAACTTTCACGGT 57.470 42.857 0.00 0.00 0.00 4.83
1532 1583 3.807622 ACATCACAGTACAACTTTCACGG 59.192 43.478 0.00 0.00 0.00 4.94
1533 1584 4.506288 TCACATCACAGTACAACTTTCACG 59.494 41.667 0.00 0.00 0.00 4.35
1539 1590 8.830580 GCATATTTATCACATCACAGTACAACT 58.169 33.333 0.00 0.00 0.00 3.16
1540 1591 8.070171 GGCATATTTATCACATCACAGTACAAC 58.930 37.037 0.00 0.00 0.00 3.32
1542 1593 7.278875 TGGCATATTTATCACATCACAGTACA 58.721 34.615 0.00 0.00 0.00 2.90
1543 1594 7.728847 TGGCATATTTATCACATCACAGTAC 57.271 36.000 0.00 0.00 0.00 2.73
1544 1595 7.041167 GCTTGGCATATTTATCACATCACAGTA 60.041 37.037 0.00 0.00 0.00 2.74
1546 1597 6.147581 GCTTGGCATATTTATCACATCACAG 58.852 40.000 0.00 0.00 0.00 3.66
1547 1598 5.593502 TGCTTGGCATATTTATCACATCACA 59.406 36.000 0.00 0.00 31.71 3.58
1550 1610 5.048224 AGCTGCTTGGCATATTTATCACATC 60.048 40.000 0.00 0.00 38.13 3.06
1553 1613 4.037208 ACAGCTGCTTGGCATATTTATCAC 59.963 41.667 15.27 0.00 38.13 3.06
1558 1618 2.449464 TCACAGCTGCTTGGCATATTT 58.551 42.857 15.27 0.00 38.13 1.40
1564 1624 4.637483 TTATTATTCACAGCTGCTTGGC 57.363 40.909 15.27 0.00 0.00 4.52
1565 1625 6.199937 AGTTTATTATTCACAGCTGCTTGG 57.800 37.500 15.27 0.85 0.00 3.61
1566 1626 7.978982 ACTAGTTTATTATTCACAGCTGCTTG 58.021 34.615 15.27 5.72 0.00 4.01
1567 1627 9.319143 CTACTAGTTTATTATTCACAGCTGCTT 57.681 33.333 15.27 0.00 0.00 3.91
1568 1628 7.439655 GCTACTAGTTTATTATTCACAGCTGCT 59.560 37.037 15.27 0.00 0.00 4.24
1570 1630 7.096023 CGGCTACTAGTTTATTATTCACAGCTG 60.096 40.741 13.48 13.48 0.00 4.24
1571 1631 6.924060 CGGCTACTAGTTTATTATTCACAGCT 59.076 38.462 0.00 0.00 0.00 4.24
1574 1634 7.774134 TCACGGCTACTAGTTTATTATTCACA 58.226 34.615 0.00 0.00 0.00 3.58
1576 1636 9.256477 CATTCACGGCTACTAGTTTATTATTCA 57.744 33.333 0.00 0.00 0.00 2.57
1577 1637 9.472361 TCATTCACGGCTACTAGTTTATTATTC 57.528 33.333 0.00 0.00 0.00 1.75
1578 1638 9.998106 ATCATTCACGGCTACTAGTTTATTATT 57.002 29.630 0.00 0.00 0.00 1.40
1579 1639 9.998106 AATCATTCACGGCTACTAGTTTATTAT 57.002 29.630 0.00 0.00 0.00 1.28
1580 1640 9.826574 AAATCATTCACGGCTACTAGTTTATTA 57.173 29.630 0.00 0.00 0.00 0.98
1581 1641 8.732746 AAATCATTCACGGCTACTAGTTTATT 57.267 30.769 0.00 0.00 0.00 1.40
1582 1642 8.732746 AAAATCATTCACGGCTACTAGTTTAT 57.267 30.769 0.00 0.00 0.00 1.40
1583 1643 9.090692 GTAAAATCATTCACGGCTACTAGTTTA 57.909 33.333 0.00 0.00 0.00 2.01
1584 1644 7.822822 AGTAAAATCATTCACGGCTACTAGTTT 59.177 33.333 0.00 0.00 0.00 2.66
1585 1645 7.277981 CAGTAAAATCATTCACGGCTACTAGTT 59.722 37.037 0.00 0.00 0.00 2.24
1586 1646 6.757010 CAGTAAAATCATTCACGGCTACTAGT 59.243 38.462 0.00 0.00 0.00 2.57
1587 1647 6.757010 ACAGTAAAATCATTCACGGCTACTAG 59.243 38.462 0.00 0.00 0.00 2.57
1588 1648 6.636705 ACAGTAAAATCATTCACGGCTACTA 58.363 36.000 0.00 0.00 0.00 1.82
1589 1649 5.488341 ACAGTAAAATCATTCACGGCTACT 58.512 37.500 0.00 0.00 0.00 2.57
1590 1650 5.796350 ACAGTAAAATCATTCACGGCTAC 57.204 39.130 0.00 0.00 0.00 3.58
1592 1652 6.811253 TTTACAGTAAAATCATTCACGGCT 57.189 33.333 3.05 0.00 0.00 5.52
1593 1653 9.006215 GTATTTTACAGTAAAATCATTCACGGC 57.994 33.333 27.44 9.78 44.67 5.68
1614 1674 9.236691 GCATCATCACGATTTGTATTTGTATTT 57.763 29.630 0.00 0.00 29.21 1.40
1615 1675 8.623903 AGCATCATCACGATTTGTATTTGTATT 58.376 29.630 0.00 0.00 29.21 1.89
1616 1676 8.071967 CAGCATCATCACGATTTGTATTTGTAT 58.928 33.333 0.00 0.00 29.21 2.29
1617 1677 7.065683 ACAGCATCATCACGATTTGTATTTGTA 59.934 33.333 0.00 0.00 30.98 2.41
1618 1678 6.127925 ACAGCATCATCACGATTTGTATTTGT 60.128 34.615 0.00 0.00 30.98 2.83
1619 1679 6.195798 CACAGCATCATCACGATTTGTATTTG 59.804 38.462 0.00 0.00 31.36 2.32
1620 1680 6.260377 CACAGCATCATCACGATTTGTATTT 58.740 36.000 0.00 0.00 31.36 1.40
1621 1681 5.731406 GCACAGCATCATCACGATTTGTATT 60.731 40.000 0.00 0.00 31.36 1.89
1622 1682 4.260907 GCACAGCATCATCACGATTTGTAT 60.261 41.667 0.00 0.00 31.36 2.29
1623 1683 3.063861 GCACAGCATCATCACGATTTGTA 59.936 43.478 0.00 0.00 31.36 2.41
1624 1684 2.159476 GCACAGCATCATCACGATTTGT 60.159 45.455 0.00 0.00 32.25 2.83
1625 1685 2.096980 AGCACAGCATCATCACGATTTG 59.903 45.455 0.00 0.00 29.21 2.32
1626 1686 2.096980 CAGCACAGCATCATCACGATTT 59.903 45.455 0.00 0.00 29.21 2.17
1627 1687 1.669265 CAGCACAGCATCATCACGATT 59.331 47.619 0.00 0.00 29.21 3.34
1628 1688 1.134610 TCAGCACAGCATCATCACGAT 60.135 47.619 0.00 0.00 33.27 3.73
1629 1689 0.247185 TCAGCACAGCATCATCACGA 59.753 50.000 0.00 0.00 0.00 4.35
1630 1690 0.651031 CTCAGCACAGCATCATCACG 59.349 55.000 0.00 0.00 0.00 4.35
1631 1691 1.015109 CCTCAGCACAGCATCATCAC 58.985 55.000 0.00 0.00 0.00 3.06
1632 1692 0.906775 TCCTCAGCACAGCATCATCA 59.093 50.000 0.00 0.00 0.00 3.07
1633 1693 1.297664 GTCCTCAGCACAGCATCATC 58.702 55.000 0.00 0.00 0.00 2.92
1634 1694 0.461516 CGTCCTCAGCACAGCATCAT 60.462 55.000 0.00 0.00 0.00 2.45
1635 1695 1.079612 CGTCCTCAGCACAGCATCA 60.080 57.895 0.00 0.00 0.00 3.07
1636 1696 0.173481 TACGTCCTCAGCACAGCATC 59.827 55.000 0.00 0.00 0.00 3.91
1637 1697 0.826715 ATACGTCCTCAGCACAGCAT 59.173 50.000 0.00 0.00 0.00 3.79
1638 1698 0.108662 CATACGTCCTCAGCACAGCA 60.109 55.000 0.00 0.00 0.00 4.41
1639 1699 0.173481 TCATACGTCCTCAGCACAGC 59.827 55.000 0.00 0.00 0.00 4.40
1640 1700 1.202348 TGTCATACGTCCTCAGCACAG 59.798 52.381 0.00 0.00 0.00 3.66
1641 1701 1.253100 TGTCATACGTCCTCAGCACA 58.747 50.000 0.00 0.00 0.00 4.57
1642 1702 2.263077 CTTGTCATACGTCCTCAGCAC 58.737 52.381 0.00 0.00 0.00 4.40
1643 1703 1.404181 GCTTGTCATACGTCCTCAGCA 60.404 52.381 0.00 0.00 0.00 4.41
1644 1704 1.134965 AGCTTGTCATACGTCCTCAGC 60.135 52.381 0.00 0.00 0.00 4.26
1645 1705 2.164422 TCAGCTTGTCATACGTCCTCAG 59.836 50.000 0.00 0.00 0.00 3.35
1646 1706 2.164422 CTCAGCTTGTCATACGTCCTCA 59.836 50.000 0.00 0.00 0.00 3.86
1647 1707 2.480416 CCTCAGCTTGTCATACGTCCTC 60.480 54.545 0.00 0.00 0.00 3.71
1648 1708 1.478510 CCTCAGCTTGTCATACGTCCT 59.521 52.381 0.00 0.00 0.00 3.85
1649 1709 1.476891 TCCTCAGCTTGTCATACGTCC 59.523 52.381 0.00 0.00 0.00 4.79
1650 1710 2.941453 TCCTCAGCTTGTCATACGTC 57.059 50.000 0.00 0.00 0.00 4.34
1651 1711 3.895232 ATTCCTCAGCTTGTCATACGT 57.105 42.857 0.00 0.00 0.00 3.57
1653 1713 4.702131 ACCAAATTCCTCAGCTTGTCATAC 59.298 41.667 0.00 0.00 0.00 2.39
1659 1719 7.396540 AGTATTAACCAAATTCCTCAGCTTG 57.603 36.000 0.00 0.00 0.00 4.01
1662 1722 8.398665 CACTAAGTATTAACCAAATTCCTCAGC 58.601 37.037 0.00 0.00 0.00 4.26
1684 1744 9.942850 TCAATTCTTTTGTCATACTCATCACTA 57.057 29.630 0.00 0.00 0.00 2.74
1686 1746 9.713740 GATCAATTCTTTTGTCATACTCATCAC 57.286 33.333 0.00 0.00 0.00 3.06
1687 1747 9.676861 AGATCAATTCTTTTGTCATACTCATCA 57.323 29.630 0.00 0.00 0.00 3.07
1690 1750 8.733458 CCAAGATCAATTCTTTTGTCATACTCA 58.267 33.333 0.00 0.00 42.15 3.41
1691 1751 8.186821 CCCAAGATCAATTCTTTTGTCATACTC 58.813 37.037 0.00 0.00 42.15 2.59
1692 1752 7.123247 CCCCAAGATCAATTCTTTTGTCATACT 59.877 37.037 0.00 0.00 42.15 2.12
1694 1754 6.127366 GCCCCAAGATCAATTCTTTTGTCATA 60.127 38.462 0.00 0.00 42.15 2.15
1699 1760 4.540359 TGCCCCAAGATCAATTCTTTTG 57.460 40.909 0.00 0.00 42.15 2.44
1704 1765 2.168936 TGCATTGCCCCAAGATCAATTC 59.831 45.455 6.12 0.00 0.00 2.17
1705 1766 2.169769 CTGCATTGCCCCAAGATCAATT 59.830 45.455 6.12 0.00 0.00 2.32
1706 1767 1.760613 CTGCATTGCCCCAAGATCAAT 59.239 47.619 6.12 0.00 0.00 2.57
1707 1768 1.187974 CTGCATTGCCCCAAGATCAA 58.812 50.000 6.12 0.00 0.00 2.57
1709 1770 1.477553 TTCTGCATTGCCCCAAGATC 58.522 50.000 6.12 0.00 0.00 2.75
1710 1771 1.941377 TTTCTGCATTGCCCCAAGAT 58.059 45.000 6.12 0.00 0.00 2.40
1711 1772 1.941377 ATTTCTGCATTGCCCCAAGA 58.059 45.000 6.12 0.00 0.00 3.02
1712 1773 2.745281 CAAATTTCTGCATTGCCCCAAG 59.255 45.455 6.12 0.00 0.00 3.61
1714 1775 1.976404 TCAAATTTCTGCATTGCCCCA 59.024 42.857 6.12 0.00 0.00 4.96
1716 1777 4.152938 GTCTTTCAAATTTCTGCATTGCCC 59.847 41.667 6.12 0.00 0.00 5.36
1718 1779 4.751098 TGGTCTTTCAAATTTCTGCATTGC 59.249 37.500 0.46 0.46 0.00 3.56
1721 1782 7.716123 TCAAAATGGTCTTTCAAATTTCTGCAT 59.284 29.630 0.00 0.00 0.00 3.96
1733 1794 4.248691 AGCAAGCTCAAAATGGTCTTTC 57.751 40.909 0.00 0.00 0.00 2.62
1734 1795 4.677673 AAGCAAGCTCAAAATGGTCTTT 57.322 36.364 0.00 0.00 0.00 2.52
1736 1797 5.713861 AGAATAAGCAAGCTCAAAATGGTCT 59.286 36.000 0.00 0.00 0.00 3.85
1737 1798 5.803967 CAGAATAAGCAAGCTCAAAATGGTC 59.196 40.000 0.00 0.00 0.00 4.02
1738 1799 5.477984 TCAGAATAAGCAAGCTCAAAATGGT 59.522 36.000 0.00 0.00 0.00 3.55
1739 1800 5.803967 GTCAGAATAAGCAAGCTCAAAATGG 59.196 40.000 0.00 0.00 0.00 3.16
1740 1801 6.384224 TGTCAGAATAAGCAAGCTCAAAATG 58.616 36.000 0.00 0.00 0.00 2.32
1741 1802 6.579666 TGTCAGAATAAGCAAGCTCAAAAT 57.420 33.333 0.00 0.00 0.00 1.82
1742 1803 6.389830 TTGTCAGAATAAGCAAGCTCAAAA 57.610 33.333 0.00 0.00 0.00 2.44
1743 1804 6.389830 TTTGTCAGAATAAGCAAGCTCAAA 57.610 33.333 0.00 0.00 0.00 2.69
1744 1805 6.579666 ATTTGTCAGAATAAGCAAGCTCAA 57.420 33.333 0.00 0.00 0.00 3.02
1745 1806 6.579666 AATTTGTCAGAATAAGCAAGCTCA 57.420 33.333 0.00 0.00 0.00 4.26
1746 1807 6.865205 ACAAATTTGTCAGAATAAGCAAGCTC 59.135 34.615 18.13 0.00 36.50 4.09
1747 1808 6.752168 ACAAATTTGTCAGAATAAGCAAGCT 58.248 32.000 18.13 0.00 36.50 3.74
1748 1809 7.412137 AACAAATTTGTCAGAATAAGCAAGC 57.588 32.000 23.47 0.00 41.31 4.01
1750 1811 9.474920 CCTTAACAAATTTGTCAGAATAAGCAA 57.525 29.630 23.47 0.00 41.31 3.91
1751 1812 8.637986 ACCTTAACAAATTTGTCAGAATAAGCA 58.362 29.630 23.47 0.00 41.31 3.91
1752 1813 8.915654 CACCTTAACAAATTTGTCAGAATAAGC 58.084 33.333 23.47 0.00 41.31 3.09
1753 1814 9.965824 ACACCTTAACAAATTTGTCAGAATAAG 57.034 29.630 23.47 22.57 41.31 1.73
1756 1817 9.131791 AGTACACCTTAACAAATTTGTCAGAAT 57.868 29.630 23.47 10.62 41.31 2.40
1757 1818 8.514330 AGTACACCTTAACAAATTTGTCAGAA 57.486 30.769 23.47 16.04 41.31 3.02
1758 1819 8.514330 AAGTACACCTTAACAAATTTGTCAGA 57.486 30.769 23.47 9.93 41.31 3.27
1759 1820 9.659830 GTAAGTACACCTTAACAAATTTGTCAG 57.340 33.333 23.47 20.13 37.39 3.51
1760 1821 9.398538 AGTAAGTACACCTTAACAAATTTGTCA 57.601 29.630 23.47 7.24 37.39 3.58
1784 1845 8.936864 GTCAAGCAAGTTATATTTCAGTGTAGT 58.063 33.333 0.00 0.00 0.00 2.73
1785 1846 8.935844 TGTCAAGCAAGTTATATTTCAGTGTAG 58.064 33.333 0.00 0.00 0.00 2.74
1786 1847 8.840833 TGTCAAGCAAGTTATATTTCAGTGTA 57.159 30.769 0.00 0.00 0.00 2.90
1787 1848 7.744087 TGTCAAGCAAGTTATATTTCAGTGT 57.256 32.000 0.00 0.00 0.00 3.55
1788 1849 9.630098 ATTTGTCAAGCAAGTTATATTTCAGTG 57.370 29.630 0.00 0.00 38.47 3.66
1789 1850 9.846248 GATTTGTCAAGCAAGTTATATTTCAGT 57.154 29.630 0.00 0.00 38.47 3.41
1790 1851 9.003112 CGATTTGTCAAGCAAGTTATATTTCAG 57.997 33.333 0.00 0.00 38.47 3.02
1791 1852 7.967854 CCGATTTGTCAAGCAAGTTATATTTCA 59.032 33.333 0.00 0.00 38.47 2.69
1792 1853 7.044052 GCCGATTTGTCAAGCAAGTTATATTTC 60.044 37.037 0.00 0.00 38.47 2.17
1793 1854 6.751888 GCCGATTTGTCAAGCAAGTTATATTT 59.248 34.615 0.00 0.00 38.47 1.40
1794 1855 6.265577 GCCGATTTGTCAAGCAAGTTATATT 58.734 36.000 0.00 0.00 38.47 1.28
1795 1856 5.221048 GGCCGATTTGTCAAGCAAGTTATAT 60.221 40.000 0.00 0.00 38.47 0.86
1796 1857 4.095782 GGCCGATTTGTCAAGCAAGTTATA 59.904 41.667 0.00 0.00 38.47 0.98
1797 1858 3.119495 GGCCGATTTGTCAAGCAAGTTAT 60.119 43.478 0.00 0.00 38.47 1.89
1798 1859 2.227865 GGCCGATTTGTCAAGCAAGTTA 59.772 45.455 0.00 0.00 38.47 2.24
1799 1860 1.000274 GGCCGATTTGTCAAGCAAGTT 60.000 47.619 0.00 0.00 38.47 2.66
1800 1861 0.598065 GGCCGATTTGTCAAGCAAGT 59.402 50.000 0.00 0.00 38.47 3.16
1801 1862 0.883833 AGGCCGATTTGTCAAGCAAG 59.116 50.000 0.00 0.00 38.47 4.01
1802 1863 1.810151 GTAGGCCGATTTGTCAAGCAA 59.190 47.619 0.00 0.00 34.87 3.91
1803 1864 1.271108 TGTAGGCCGATTTGTCAAGCA 60.271 47.619 0.00 0.00 0.00 3.91
1804 1865 1.448985 TGTAGGCCGATTTGTCAAGC 58.551 50.000 0.00 0.00 0.00 4.01
1805 1866 3.245284 CGTATGTAGGCCGATTTGTCAAG 59.755 47.826 0.00 0.00 0.00 3.02
1806 1867 3.119065 TCGTATGTAGGCCGATTTGTCAA 60.119 43.478 0.00 0.00 0.00 3.18
1807 1868 2.427812 TCGTATGTAGGCCGATTTGTCA 59.572 45.455 0.00 0.00 0.00 3.58
1808 1869 3.088194 TCGTATGTAGGCCGATTTGTC 57.912 47.619 0.00 0.00 0.00 3.18
1809 1870 3.530265 TTCGTATGTAGGCCGATTTGT 57.470 42.857 0.00 0.00 0.00 2.83
1810 1871 5.418310 AAATTCGTATGTAGGCCGATTTG 57.582 39.130 0.00 0.00 0.00 2.32
1811 1872 5.820947 AGAAAATTCGTATGTAGGCCGATTT 59.179 36.000 0.00 0.00 0.00 2.17
1812 1873 5.365619 AGAAAATTCGTATGTAGGCCGATT 58.634 37.500 0.00 0.00 0.00 3.34
1813 1874 4.957296 AGAAAATTCGTATGTAGGCCGAT 58.043 39.130 0.00 0.00 0.00 4.18
1814 1875 4.098960 AGAGAAAATTCGTATGTAGGCCGA 59.901 41.667 0.00 0.00 0.00 5.54
1815 1876 4.209288 CAGAGAAAATTCGTATGTAGGCCG 59.791 45.833 0.00 0.00 0.00 6.13
1816 1877 5.234543 GTCAGAGAAAATTCGTATGTAGGCC 59.765 44.000 0.00 0.00 0.00 5.19
1817 1878 5.234543 GGTCAGAGAAAATTCGTATGTAGGC 59.765 44.000 0.00 0.00 0.00 3.93
1818 1879 6.574350 AGGTCAGAGAAAATTCGTATGTAGG 58.426 40.000 0.00 0.00 0.00 3.18
1819 1880 7.221067 GTGAGGTCAGAGAAAATTCGTATGTAG 59.779 40.741 0.00 0.00 0.00 2.74
1820 1881 7.033791 GTGAGGTCAGAGAAAATTCGTATGTA 58.966 38.462 0.00 0.00 0.00 2.29
1821 1882 5.869888 GTGAGGTCAGAGAAAATTCGTATGT 59.130 40.000 0.00 0.00 0.00 2.29
1822 1883 6.035435 CAGTGAGGTCAGAGAAAATTCGTATG 59.965 42.308 0.00 0.00 0.00 2.39
1823 1884 6.102663 CAGTGAGGTCAGAGAAAATTCGTAT 58.897 40.000 0.00 0.00 0.00 3.06
1824 1885 5.470368 CAGTGAGGTCAGAGAAAATTCGTA 58.530 41.667 0.00 0.00 0.00 3.43
1825 1886 4.310769 CAGTGAGGTCAGAGAAAATTCGT 58.689 43.478 0.00 0.00 0.00 3.85
1826 1887 3.681897 CCAGTGAGGTCAGAGAAAATTCG 59.318 47.826 0.00 0.00 0.00 3.34
1827 1888 4.899502 TCCAGTGAGGTCAGAGAAAATTC 58.100 43.478 0.00 0.00 39.02 2.17
1828 1889 4.982241 TCCAGTGAGGTCAGAGAAAATT 57.018 40.909 0.00 0.00 39.02 1.82
1829 1890 4.982241 TTCCAGTGAGGTCAGAGAAAAT 57.018 40.909 0.00 0.00 39.02 1.82
1830 1891 4.164221 ACTTTCCAGTGAGGTCAGAGAAAA 59.836 41.667 0.00 0.00 39.02 2.29
2012 2076 1.752310 CTCGAGAGCCTGAGGAGCA 60.752 63.158 6.58 0.00 0.00 4.26
2198 2262 1.683418 GGACCACATCCTCGGGTACC 61.683 65.000 2.17 2.17 45.84 3.34
2277 2341 3.083349 AGCATGCACCCGGAGCTA 61.083 61.111 21.98 6.86 33.06 3.32
2469 2566 0.107831 ACCAGTGCGTGCCTTTTCTA 59.892 50.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.