Multiple sequence alignment - TraesCS7D01G205300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G205300 chr7D 100.000 3137 0 0 1 3137 163009435 163012571 0.000000e+00 5794.0
1 TraesCS7D01G205300 chr7B 94.360 1312 56 11 751 2059 125064351 125065647 0.000000e+00 1997.0
2 TraesCS7D01G205300 chr7B 93.137 714 37 4 2432 3137 125065880 125066589 0.000000e+00 1037.0
3 TraesCS7D01G205300 chr7B 89.378 772 50 16 2 744 125063425 125064193 0.000000e+00 942.0
4 TraesCS7D01G205300 chr7A 94.976 617 31 0 2432 3048 163916533 163917149 0.000000e+00 968.0
5 TraesCS7D01G205300 chr7A 81.500 800 145 1 1226 2022 46910996 46911795 0.000000e+00 654.0
6 TraesCS7D01G205300 chr7A 93.434 396 26 0 1664 2059 163915912 163916307 3.490000e-164 588.0
7 TraesCS7D01G205300 chr7A 86.517 89 12 0 643 731 56656801 56656889 7.160000e-17 99.0
8 TraesCS7D01G205300 chr2A 80.671 864 151 14 1189 2041 24002381 24003239 0.000000e+00 656.0
9 TraesCS7D01G205300 chr2A 74.740 867 184 29 1186 2036 131711372 131712219 3.850000e-94 355.0
10 TraesCS7D01G205300 chr2A 86.585 82 10 1 643 724 580026187 580026267 4.310000e-14 89.8
11 TraesCS7D01G205300 chr2A 85.556 90 5 6 463 549 279853798 279853714 1.550000e-13 87.9
12 TraesCS7D01G205300 chr2D 79.817 872 158 15 1189 2048 22161438 22162303 1.240000e-173 619.0
13 TraesCS7D01G205300 chr2D 77.993 877 170 20 1185 2048 619605657 619604791 2.140000e-146 529.0
14 TraesCS7D01G205300 chr2D 74.858 879 180 29 1186 2036 125343881 125344746 8.270000e-96 361.0
15 TraesCS7D01G205300 chr2D 88.889 81 8 1 643 723 412849140 412849219 7.160000e-17 99.0
16 TraesCS7D01G205300 chr2D 81.188 101 17 2 643 743 558797646 558797548 2.590000e-11 80.5
17 TraesCS7D01G205300 chr1D 79.412 884 155 18 1188 2049 476794504 476793626 1.610000e-167 599.0
18 TraesCS7D01G205300 chr2B 77.702 879 176 17 1182 2048 758921776 758922646 1.290000e-143 520.0
19 TraesCS7D01G205300 chr2B 77.563 878 175 18 1185 2048 759176397 759175528 7.760000e-141 510.0
20 TraesCS7D01G205300 chr2B 75.372 873 176 27 1186 2031 178731051 178731911 4.910000e-103 385.0
21 TraesCS7D01G205300 chr6D 85.437 103 13 2 643 744 325421684 325421583 4.280000e-19 106.0
22 TraesCS7D01G205300 chr3D 77.778 189 26 12 350 530 193312094 193312274 5.540000e-18 102.0
23 TraesCS7D01G205300 chr4A 84.375 96 13 1 643 738 684208361 684208454 3.330000e-15 93.5
24 TraesCS7D01G205300 chr3A 83.333 102 16 1 643 744 66217950 66218050 3.330000e-15 93.5
25 TraesCS7D01G205300 chr3A 89.062 64 4 3 494 556 269520896 269520835 3.350000e-10 76.8
26 TraesCS7D01G205300 chr3A 84.000 75 4 7 462 533 269544468 269544399 7.260000e-07 65.8
27 TraesCS7D01G205300 chr3B 87.838 74 9 0 645 718 537658990 537659063 1.550000e-13 87.9
28 TraesCS7D01G205300 chr5A 91.071 56 3 2 494 547 276456454 276456509 1.210000e-09 75.0
29 TraesCS7D01G205300 chr5A 91.071 56 3 2 494 547 276494886 276494941 1.210000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G205300 chr7D 163009435 163012571 3136 False 5794.000000 5794 100.000000 1 3137 1 chr7D.!!$F1 3136
1 TraesCS7D01G205300 chr7B 125063425 125066589 3164 False 1325.333333 1997 92.291667 2 3137 3 chr7B.!!$F1 3135
2 TraesCS7D01G205300 chr7A 163915912 163917149 1237 False 778.000000 968 94.205000 1664 3048 2 chr7A.!!$F3 1384
3 TraesCS7D01G205300 chr7A 46910996 46911795 799 False 654.000000 654 81.500000 1226 2022 1 chr7A.!!$F1 796
4 TraesCS7D01G205300 chr2A 24002381 24003239 858 False 656.000000 656 80.671000 1189 2041 1 chr2A.!!$F1 852
5 TraesCS7D01G205300 chr2A 131711372 131712219 847 False 355.000000 355 74.740000 1186 2036 1 chr2A.!!$F2 850
6 TraesCS7D01G205300 chr2D 22161438 22162303 865 False 619.000000 619 79.817000 1189 2048 1 chr2D.!!$F1 859
7 TraesCS7D01G205300 chr2D 619604791 619605657 866 True 529.000000 529 77.993000 1185 2048 1 chr2D.!!$R2 863
8 TraesCS7D01G205300 chr2D 125343881 125344746 865 False 361.000000 361 74.858000 1186 2036 1 chr2D.!!$F2 850
9 TraesCS7D01G205300 chr1D 476793626 476794504 878 True 599.000000 599 79.412000 1188 2049 1 chr1D.!!$R1 861
10 TraesCS7D01G205300 chr2B 758921776 758922646 870 False 520.000000 520 77.702000 1182 2048 1 chr2B.!!$F2 866
11 TraesCS7D01G205300 chr2B 759175528 759176397 869 True 510.000000 510 77.563000 1185 2048 1 chr2B.!!$R1 863
12 TraesCS7D01G205300 chr2B 178731051 178731911 860 False 385.000000 385 75.372000 1186 2031 1 chr2B.!!$F1 845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.038166 AATCTGGGAGGCGCTTTGAA 59.962 50.0 7.64 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2449 0.247185 TCGTGATGATGCTGTGCTGA 59.753 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.828520 TGTTCGAATCTCTCCTCTGCTT 59.171 45.455 0.00 0.00 0.00 3.91
101 102 5.064707 CCACAAAAGTTCGAAAGAGAAGACA 59.935 40.000 0.00 0.00 43.69 3.41
115 116 1.734465 GAAGACATCCTTGTTGCCTCG 59.266 52.381 0.00 0.00 35.79 4.63
147 148 1.672356 CCCGAGTCAACAAGCAGGG 60.672 63.158 0.00 0.00 0.00 4.45
150 151 1.230635 CGAGTCAACAAGCAGGGGTG 61.231 60.000 0.00 0.00 0.00 4.61
166 167 2.572104 GGGGTGTGTGATAGGATATCCC 59.428 54.545 18.56 3.83 36.42 3.85
167 168 2.572104 GGGTGTGTGATAGGATATCCCC 59.428 54.545 18.56 8.58 36.42 4.81
190 191 2.897780 TAACGCACACACCGTTACC 58.102 52.632 2.67 0.00 45.89 2.85
221 222 4.501559 TCTCGGTAGCGTTTTTAATCATCG 59.498 41.667 14.79 0.00 0.00 3.84
239 240 5.883661 TCATCGTTTTACTAACCTACCTCG 58.116 41.667 0.00 0.00 0.00 4.63
246 247 6.655078 TTTACTAACCTACCTCGAACAAGT 57.345 37.500 0.00 0.00 0.00 3.16
259 260 3.818787 CAAGTGCTGCATCCCGGC 61.819 66.667 5.27 0.00 46.38 6.13
273 274 2.401766 CCGGCAGCGCTTTGAATCT 61.402 57.895 7.50 0.00 0.00 2.40
280 281 1.997928 GCGCTTTGAATCTGGGAGGC 61.998 60.000 0.00 0.00 0.00 4.70
281 282 1.709147 CGCTTTGAATCTGGGAGGCG 61.709 60.000 0.00 0.00 35.75 5.52
283 284 0.393537 CTTTGAATCTGGGAGGCGCT 60.394 55.000 7.64 0.00 0.00 5.92
286 287 0.677731 TGAATCTGGGAGGCGCTTTG 60.678 55.000 7.64 0.00 0.00 2.77
287 288 0.392998 GAATCTGGGAGGCGCTTTGA 60.393 55.000 7.64 0.00 0.00 2.69
288 289 0.038166 AATCTGGGAGGCGCTTTGAA 59.962 50.000 7.64 0.00 0.00 2.69
291 310 1.378514 TGGGAGGCGCTTTGAATCC 60.379 57.895 7.64 5.60 0.00 3.01
293 312 1.378514 GGAGGCGCTTTGAATCCCA 60.379 57.895 7.64 0.00 0.00 4.37
300 319 2.360165 GCGCTTTGAATCCCAGATGAAT 59.640 45.455 0.00 0.00 0.00 2.57
359 385 8.836268 TTTTTGTAGATGTTCGTGTAATACCT 57.164 30.769 0.00 0.00 0.00 3.08
361 387 5.813717 TGTAGATGTTCGTGTAATACCTCG 58.186 41.667 0.00 0.00 0.00 4.63
374 400 7.263496 GTGTAATACCTCGAGTGTAATCCTTT 58.737 38.462 12.31 6.83 0.00 3.11
378 404 3.775316 ACCTCGAGTGTAATCCTTTCCAT 59.225 43.478 12.31 0.00 0.00 3.41
387 413 7.892609 AGTGTAATCCTTTCCATTTTGTAACC 58.107 34.615 0.00 0.00 0.00 2.85
517 544 1.542472 TGCATTGTGCCTCTTGTCATG 59.458 47.619 0.00 0.00 44.23 3.07
548 575 8.810652 TTTCATCATGATCATTATGTGCATTG 57.189 30.769 23.02 4.84 0.00 2.82
592 619 6.283694 ACTTGATATGCGCTTCTATTCTTGA 58.716 36.000 9.73 0.00 0.00 3.02
622 650 4.651503 TCCCCAGACTCATGAGAATAAGAC 59.348 45.833 29.27 10.34 0.00 3.01
623 651 4.653341 CCCCAGACTCATGAGAATAAGACT 59.347 45.833 29.27 12.16 0.00 3.24
624 652 5.453057 CCCCAGACTCATGAGAATAAGACTG 60.453 48.000 29.27 20.50 0.00 3.51
638 666 3.301794 AAGACTGCATATTGGGCATGA 57.698 42.857 0.00 0.00 41.06 3.07
652 680 2.159627 GGGCATGACAAGTTCGTGTTAG 59.840 50.000 0.00 0.00 42.57 2.34
654 682 3.363970 GGCATGACAAGTTCGTGTTAGTG 60.364 47.826 0.00 0.00 42.57 2.74
657 685 4.112716 TGACAAGTTCGTGTTAGTGTCA 57.887 40.909 0.38 0.38 42.14 3.58
705 733 1.238439 ATGGAGCAACAGTGTTTCGG 58.762 50.000 5.57 0.00 0.00 4.30
706 734 0.817634 TGGAGCAACAGTGTTTCGGG 60.818 55.000 5.57 0.00 0.00 5.14
708 736 0.534203 GAGCAACAGTGTTTCGGGGA 60.534 55.000 5.57 0.00 0.00 4.81
744 772 1.244019 GGCGTGGCATTTGGTCTTCT 61.244 55.000 0.00 0.00 0.00 2.85
745 773 0.169009 GCGTGGCATTTGGTCTTCTC 59.831 55.000 0.00 0.00 0.00 2.87
748 776 3.334691 CGTGGCATTTGGTCTTCTCTTA 58.665 45.455 0.00 0.00 0.00 2.10
749 777 3.125316 CGTGGCATTTGGTCTTCTCTTAC 59.875 47.826 0.00 0.00 0.00 2.34
754 933 5.390991 GGCATTTGGTCTTCTCTTACTTTCG 60.391 44.000 0.00 0.00 0.00 3.46
755 934 5.622378 CATTTGGTCTTCTCTTACTTTCGC 58.378 41.667 0.00 0.00 0.00 4.70
760 939 4.389382 GGTCTTCTCTTACTTTCGCTTTCC 59.611 45.833 0.00 0.00 0.00 3.13
767 946 4.876107 TCTTACTTTCGCTTTCCATCATCC 59.124 41.667 0.00 0.00 0.00 3.51
790 969 6.821665 TCCTTTTACTATTCCTTGGTTCGATG 59.178 38.462 0.00 0.00 0.00 3.84
811 990 1.135333 CGTCAGCTAAGAGGGTCCTTC 59.865 57.143 0.00 0.00 0.00 3.46
817 996 4.898861 CAGCTAAGAGGGTCCTTCTCTTAT 59.101 45.833 14.53 0.00 46.44 1.73
819 998 6.723977 CAGCTAAGAGGGTCCTTCTCTTATAT 59.276 42.308 14.53 6.95 46.44 0.86
820 999 6.951778 AGCTAAGAGGGTCCTTCTCTTATATC 59.048 42.308 14.53 9.27 46.44 1.63
821 1000 6.951778 GCTAAGAGGGTCCTTCTCTTATATCT 59.048 42.308 14.53 0.00 46.44 1.98
822 1001 7.453439 GCTAAGAGGGTCCTTCTCTTATATCTT 59.547 40.741 14.53 0.00 46.44 2.40
870 1049 2.527100 AGAAATCGGTAGCGAAAGACG 58.473 47.619 22.11 0.00 45.66 4.18
881 1060 2.735134 AGCGAAAGACGTACATTTCCAC 59.265 45.455 12.27 7.11 44.60 4.02
932 1111 1.399714 TATACTGCTCGGGTCACCAG 58.600 55.000 0.00 0.00 36.13 4.00
1007 1186 0.668535 GGCAGTCCAACAACTCCAAC 59.331 55.000 0.00 0.00 0.00 3.77
1008 1187 1.680338 GCAGTCCAACAACTCCAACT 58.320 50.000 0.00 0.00 0.00 3.16
1009 1188 2.024414 GCAGTCCAACAACTCCAACTT 58.976 47.619 0.00 0.00 0.00 2.66
1010 1189 2.033424 GCAGTCCAACAACTCCAACTTC 59.967 50.000 0.00 0.00 0.00 3.01
1011 1190 3.278574 CAGTCCAACAACTCCAACTTCA 58.721 45.455 0.00 0.00 0.00 3.02
1012 1191 3.694072 CAGTCCAACAACTCCAACTTCAA 59.306 43.478 0.00 0.00 0.00 2.69
1013 1192 4.339247 CAGTCCAACAACTCCAACTTCAAT 59.661 41.667 0.00 0.00 0.00 2.57
1024 1203 2.086869 CAACTTCAATCCATGGCGACT 58.913 47.619 6.96 0.00 0.00 4.18
1073 1252 3.370103 TATCCCGTTCAAGGATGTTGTCC 60.370 47.826 2.53 0.00 44.07 4.02
1097 1276 4.657824 ACGTCAACCTGGTCGCCG 62.658 66.667 0.00 5.12 0.00 6.46
1102 1281 3.395702 AACCTGGTCGCCGCCATA 61.396 61.111 0.00 0.00 37.96 2.74
1103 1282 3.385749 AACCTGGTCGCCGCCATAG 62.386 63.158 0.00 0.00 37.96 2.23
1131 1310 0.246635 ACATCTTCGGAAGACCACGG 59.753 55.000 21.86 11.74 41.01 4.94
1153 1332 0.826256 ATGTCCTGGTATCGGCGCTA 60.826 55.000 7.64 0.00 0.00 4.26
1170 1349 1.639298 CTACCGAGCAAGCTGTTGGC 61.639 60.000 0.00 0.00 42.19 4.52
1420 1603 0.107831 ACCAGTGCGTGCCTTTTCTA 59.892 50.000 0.00 0.00 0.00 2.10
1612 1813 3.083349 AGCATGCACCCGGAGCTA 61.083 61.111 21.98 6.86 33.06 3.32
1691 1892 1.683418 GGACCACATCCTCGGGTACC 61.683 65.000 2.17 2.17 45.84 3.34
1877 2078 1.752310 CTCGAGAGCCTGAGGAGCA 60.752 63.158 6.58 0.00 0.00 4.26
2059 2266 4.164221 ACTTTCCAGTGAGGTCAGAGAAAA 59.836 41.667 0.00 0.00 39.02 2.29
2060 2267 4.982241 TTCCAGTGAGGTCAGAGAAAAT 57.018 40.909 0.00 0.00 39.02 1.82
2061 2268 4.982241 TCCAGTGAGGTCAGAGAAAATT 57.018 40.909 0.00 0.00 39.02 1.82
2062 2269 4.899502 TCCAGTGAGGTCAGAGAAAATTC 58.100 43.478 0.00 0.00 39.02 2.17
2063 2270 3.681897 CCAGTGAGGTCAGAGAAAATTCG 59.318 47.826 0.00 0.00 0.00 3.34
2064 2271 4.310769 CAGTGAGGTCAGAGAAAATTCGT 58.689 43.478 0.00 0.00 0.00 3.85
2065 2272 5.470368 CAGTGAGGTCAGAGAAAATTCGTA 58.530 41.667 0.00 0.00 0.00 3.43
2066 2273 6.102663 CAGTGAGGTCAGAGAAAATTCGTAT 58.897 40.000 0.00 0.00 0.00 3.06
2067 2274 6.035435 CAGTGAGGTCAGAGAAAATTCGTATG 59.965 42.308 0.00 0.00 0.00 2.39
2068 2275 5.869888 GTGAGGTCAGAGAAAATTCGTATGT 59.130 40.000 0.00 0.00 0.00 2.29
2069 2276 7.033791 GTGAGGTCAGAGAAAATTCGTATGTA 58.966 38.462 0.00 0.00 0.00 2.29
2070 2277 7.221067 GTGAGGTCAGAGAAAATTCGTATGTAG 59.779 40.741 0.00 0.00 0.00 2.74
2071 2278 6.574350 AGGTCAGAGAAAATTCGTATGTAGG 58.426 40.000 0.00 0.00 0.00 3.18
2072 2279 5.234543 GGTCAGAGAAAATTCGTATGTAGGC 59.765 44.000 0.00 0.00 0.00 3.93
2073 2280 5.234543 GTCAGAGAAAATTCGTATGTAGGCC 59.765 44.000 0.00 0.00 0.00 5.19
2074 2281 4.209288 CAGAGAAAATTCGTATGTAGGCCG 59.791 45.833 0.00 0.00 0.00 6.13
2075 2282 4.098960 AGAGAAAATTCGTATGTAGGCCGA 59.901 41.667 0.00 0.00 0.00 5.54
2076 2283 4.957296 AGAAAATTCGTATGTAGGCCGAT 58.043 39.130 0.00 0.00 0.00 4.18
2077 2284 5.365619 AGAAAATTCGTATGTAGGCCGATT 58.634 37.500 0.00 0.00 0.00 3.34
2078 2285 5.820947 AGAAAATTCGTATGTAGGCCGATTT 59.179 36.000 0.00 0.00 0.00 2.17
2079 2286 5.418310 AAATTCGTATGTAGGCCGATTTG 57.582 39.130 0.00 0.00 0.00 2.32
2080 2287 3.530265 TTCGTATGTAGGCCGATTTGT 57.470 42.857 0.00 0.00 0.00 2.83
2081 2288 3.088194 TCGTATGTAGGCCGATTTGTC 57.912 47.619 0.00 0.00 0.00 3.18
2082 2289 2.427812 TCGTATGTAGGCCGATTTGTCA 59.572 45.455 0.00 0.00 0.00 3.58
2083 2290 3.119065 TCGTATGTAGGCCGATTTGTCAA 60.119 43.478 0.00 0.00 0.00 3.18
2084 2291 3.245284 CGTATGTAGGCCGATTTGTCAAG 59.755 47.826 0.00 0.00 0.00 3.02
2085 2292 1.448985 TGTAGGCCGATTTGTCAAGC 58.551 50.000 0.00 0.00 0.00 4.01
2086 2293 1.271108 TGTAGGCCGATTTGTCAAGCA 60.271 47.619 0.00 0.00 0.00 3.91
2087 2294 1.810151 GTAGGCCGATTTGTCAAGCAA 59.190 47.619 0.00 0.00 34.87 3.91
2088 2295 0.883833 AGGCCGATTTGTCAAGCAAG 59.116 50.000 0.00 0.00 38.47 4.01
2089 2296 0.598065 GGCCGATTTGTCAAGCAAGT 59.402 50.000 0.00 0.00 38.47 3.16
2090 2297 1.000274 GGCCGATTTGTCAAGCAAGTT 60.000 47.619 0.00 0.00 38.47 2.66
2091 2298 2.227865 GGCCGATTTGTCAAGCAAGTTA 59.772 45.455 0.00 0.00 38.47 2.24
2092 2299 3.119495 GGCCGATTTGTCAAGCAAGTTAT 60.119 43.478 0.00 0.00 38.47 1.89
2093 2300 4.095782 GGCCGATTTGTCAAGCAAGTTATA 59.904 41.667 0.00 0.00 38.47 0.98
2094 2301 5.221048 GGCCGATTTGTCAAGCAAGTTATAT 60.221 40.000 0.00 0.00 38.47 0.86
2095 2302 6.265577 GCCGATTTGTCAAGCAAGTTATATT 58.734 36.000 0.00 0.00 38.47 1.28
2096 2303 6.751888 GCCGATTTGTCAAGCAAGTTATATTT 59.248 34.615 0.00 0.00 38.47 1.40
2097 2304 7.044052 GCCGATTTGTCAAGCAAGTTATATTTC 60.044 37.037 0.00 0.00 38.47 2.17
2098 2305 7.967854 CCGATTTGTCAAGCAAGTTATATTTCA 59.032 33.333 0.00 0.00 38.47 2.69
2099 2306 9.003112 CGATTTGTCAAGCAAGTTATATTTCAG 57.997 33.333 0.00 0.00 38.47 3.02
2100 2307 9.846248 GATTTGTCAAGCAAGTTATATTTCAGT 57.154 29.630 0.00 0.00 38.47 3.41
2101 2308 9.630098 ATTTGTCAAGCAAGTTATATTTCAGTG 57.370 29.630 0.00 0.00 38.47 3.66
2102 2309 7.744087 TGTCAAGCAAGTTATATTTCAGTGT 57.256 32.000 0.00 0.00 0.00 3.55
2103 2310 8.840833 TGTCAAGCAAGTTATATTTCAGTGTA 57.159 30.769 0.00 0.00 0.00 2.90
2104 2311 8.935844 TGTCAAGCAAGTTATATTTCAGTGTAG 58.064 33.333 0.00 0.00 0.00 2.74
2105 2312 8.936864 GTCAAGCAAGTTATATTTCAGTGTAGT 58.063 33.333 0.00 0.00 0.00 2.73
2129 2336 9.398538 AGTAAGTACACCTTAACAAATTTGTCA 57.601 29.630 23.47 7.24 37.39 3.58
2130 2337 9.659830 GTAAGTACACCTTAACAAATTTGTCAG 57.340 33.333 23.47 20.13 37.39 3.51
2131 2338 8.514330 AAGTACACCTTAACAAATTTGTCAGA 57.486 30.769 23.47 9.93 41.31 3.27
2132 2339 8.514330 AGTACACCTTAACAAATTTGTCAGAA 57.486 30.769 23.47 16.04 41.31 3.02
2133 2340 9.131791 AGTACACCTTAACAAATTTGTCAGAAT 57.868 29.630 23.47 10.62 41.31 2.40
2136 2343 9.965824 ACACCTTAACAAATTTGTCAGAATAAG 57.034 29.630 23.47 22.57 41.31 1.73
2137 2344 8.915654 CACCTTAACAAATTTGTCAGAATAAGC 58.084 33.333 23.47 0.00 41.31 3.09
2138 2345 8.637986 ACCTTAACAAATTTGTCAGAATAAGCA 58.362 29.630 23.47 0.00 41.31 3.91
2139 2346 9.474920 CCTTAACAAATTTGTCAGAATAAGCAA 57.525 29.630 23.47 0.00 41.31 3.91
2141 2348 7.412137 AACAAATTTGTCAGAATAAGCAAGC 57.588 32.000 23.47 0.00 41.31 4.01
2142 2349 6.752168 ACAAATTTGTCAGAATAAGCAAGCT 58.248 32.000 18.13 0.00 36.50 3.74
2143 2350 6.865205 ACAAATTTGTCAGAATAAGCAAGCTC 59.135 34.615 18.13 0.00 36.50 4.09
2144 2351 6.579666 AATTTGTCAGAATAAGCAAGCTCA 57.420 33.333 0.00 0.00 0.00 4.26
2145 2352 6.579666 ATTTGTCAGAATAAGCAAGCTCAA 57.420 33.333 0.00 0.00 0.00 3.02
2146 2353 6.389830 TTTGTCAGAATAAGCAAGCTCAAA 57.610 33.333 0.00 0.00 0.00 2.69
2147 2354 6.389830 TTGTCAGAATAAGCAAGCTCAAAA 57.610 33.333 0.00 0.00 0.00 2.44
2148 2355 6.579666 TGTCAGAATAAGCAAGCTCAAAAT 57.420 33.333 0.00 0.00 0.00 1.82
2149 2356 6.384224 TGTCAGAATAAGCAAGCTCAAAATG 58.616 36.000 0.00 0.00 0.00 2.32
2150 2357 5.803967 GTCAGAATAAGCAAGCTCAAAATGG 59.196 40.000 0.00 0.00 0.00 3.16
2151 2358 5.477984 TCAGAATAAGCAAGCTCAAAATGGT 59.522 36.000 0.00 0.00 0.00 3.55
2152 2359 5.803967 CAGAATAAGCAAGCTCAAAATGGTC 59.196 40.000 0.00 0.00 0.00 4.02
2153 2360 5.713861 AGAATAAGCAAGCTCAAAATGGTCT 59.286 36.000 0.00 0.00 0.00 3.85
2154 2361 5.990120 ATAAGCAAGCTCAAAATGGTCTT 57.010 34.783 0.00 0.00 0.00 3.01
2155 2362 4.677673 AAGCAAGCTCAAAATGGTCTTT 57.322 36.364 0.00 0.00 0.00 2.52
2156 2363 4.248691 AGCAAGCTCAAAATGGTCTTTC 57.751 40.909 0.00 0.00 0.00 2.62
2168 2375 7.716123 TCAAAATGGTCTTTCAAATTTCTGCAT 59.284 29.630 0.00 0.00 0.00 3.96
2171 2378 4.751098 TGGTCTTTCAAATTTCTGCATTGC 59.249 37.500 0.46 0.46 0.00 3.56
2173 2380 4.152938 GTCTTTCAAATTTCTGCATTGCCC 59.847 41.667 6.12 0.00 0.00 5.36
2175 2382 1.976404 TCAAATTTCTGCATTGCCCCA 59.024 42.857 6.12 0.00 0.00 4.96
2177 2384 2.745281 CAAATTTCTGCATTGCCCCAAG 59.255 45.455 6.12 0.00 0.00 3.61
2178 2385 1.941377 ATTTCTGCATTGCCCCAAGA 58.059 45.000 6.12 0.00 0.00 3.02
2179 2386 1.941377 TTTCTGCATTGCCCCAAGAT 58.059 45.000 6.12 0.00 0.00 2.40
2180 2387 1.477553 TTCTGCATTGCCCCAAGATC 58.522 50.000 6.12 0.00 0.00 2.75
2182 2389 1.187974 CTGCATTGCCCCAAGATCAA 58.812 50.000 6.12 0.00 0.00 2.57
2183 2390 1.760613 CTGCATTGCCCCAAGATCAAT 59.239 47.619 6.12 0.00 0.00 2.57
2184 2391 2.169769 CTGCATTGCCCCAAGATCAATT 59.830 45.455 6.12 0.00 0.00 2.32
2185 2392 2.168936 TGCATTGCCCCAAGATCAATTC 59.831 45.455 6.12 0.00 0.00 2.17
2190 2397 4.540359 TGCCCCAAGATCAATTCTTTTG 57.460 40.909 0.00 0.00 42.15 2.44
2195 2402 6.127366 GCCCCAAGATCAATTCTTTTGTCATA 60.127 38.462 0.00 0.00 42.15 2.15
2196 2403 7.260603 CCCCAAGATCAATTCTTTTGTCATAC 58.739 38.462 0.00 0.00 42.15 2.39
2197 2404 7.123247 CCCCAAGATCAATTCTTTTGTCATACT 59.877 37.037 0.00 0.00 42.15 2.12
2199 2406 8.733458 CCAAGATCAATTCTTTTGTCATACTCA 58.267 33.333 0.00 0.00 42.15 3.41
2205 2413 9.942850 TCAATTCTTTTGTCATACTCATCACTA 57.057 29.630 0.00 0.00 0.00 2.74
2227 2435 8.398665 CACTAAGTATTAACCAAATTCCTCAGC 58.601 37.037 0.00 0.00 0.00 4.26
2230 2438 7.396540 AGTATTAACCAAATTCCTCAGCTTG 57.603 36.000 0.00 0.00 0.00 4.01
2236 2444 4.702131 ACCAAATTCCTCAGCTTGTCATAC 59.298 41.667 0.00 0.00 0.00 2.39
2238 2446 3.895232 ATTCCTCAGCTTGTCATACGT 57.105 42.857 0.00 0.00 0.00 3.57
2239 2447 2.941453 TCCTCAGCTTGTCATACGTC 57.059 50.000 0.00 0.00 0.00 4.34
2240 2448 1.476891 TCCTCAGCTTGTCATACGTCC 59.523 52.381 0.00 0.00 0.00 4.79
2241 2449 1.478510 CCTCAGCTTGTCATACGTCCT 59.521 52.381 0.00 0.00 0.00 3.85
2244 2452 2.164422 TCAGCTTGTCATACGTCCTCAG 59.836 50.000 0.00 0.00 0.00 3.35
2245 2453 1.134965 AGCTTGTCATACGTCCTCAGC 60.135 52.381 0.00 0.00 0.00 4.26
2246 2454 1.404181 GCTTGTCATACGTCCTCAGCA 60.404 52.381 0.00 0.00 0.00 4.41
2247 2455 2.263077 CTTGTCATACGTCCTCAGCAC 58.737 52.381 0.00 0.00 0.00 4.40
2248 2456 1.253100 TGTCATACGTCCTCAGCACA 58.747 50.000 0.00 0.00 0.00 4.57
2250 2458 0.173481 TCATACGTCCTCAGCACAGC 59.827 55.000 0.00 0.00 0.00 4.40
2251 2459 0.108662 CATACGTCCTCAGCACAGCA 60.109 55.000 0.00 0.00 0.00 4.41
2252 2460 0.826715 ATACGTCCTCAGCACAGCAT 59.173 50.000 0.00 0.00 0.00 3.79
2253 2461 0.173481 TACGTCCTCAGCACAGCATC 59.827 55.000 0.00 0.00 0.00 3.91
2254 2462 1.079612 CGTCCTCAGCACAGCATCA 60.080 57.895 0.00 0.00 0.00 3.07
2255 2463 0.461516 CGTCCTCAGCACAGCATCAT 60.462 55.000 0.00 0.00 0.00 2.45
2257 2465 0.906775 TCCTCAGCACAGCATCATCA 59.093 50.000 0.00 0.00 0.00 3.07
2258 2466 1.015109 CCTCAGCACAGCATCATCAC 58.985 55.000 0.00 0.00 0.00 3.06
2259 2467 0.651031 CTCAGCACAGCATCATCACG 59.349 55.000 0.00 0.00 0.00 4.35
2260 2468 0.247185 TCAGCACAGCATCATCACGA 59.753 50.000 0.00 0.00 0.00 4.35
2261 2469 1.134610 TCAGCACAGCATCATCACGAT 60.135 47.619 0.00 0.00 33.27 3.73
2262 2470 1.669265 CAGCACAGCATCATCACGATT 59.331 47.619 0.00 0.00 29.21 3.34
2263 2471 2.096980 CAGCACAGCATCATCACGATTT 59.903 45.455 0.00 0.00 29.21 2.17
2264 2472 2.096980 AGCACAGCATCATCACGATTTG 59.903 45.455 0.00 0.00 29.21 2.32
2265 2473 2.159476 GCACAGCATCATCACGATTTGT 60.159 45.455 0.00 0.00 32.25 2.83
2267 2475 4.260907 GCACAGCATCATCACGATTTGTAT 60.261 41.667 0.00 0.00 31.36 2.29
2268 2476 5.731406 GCACAGCATCATCACGATTTGTATT 60.731 40.000 0.00 0.00 31.36 1.89
2269 2477 6.260377 CACAGCATCATCACGATTTGTATTT 58.740 36.000 0.00 0.00 31.36 1.40
2271 2479 6.127925 ACAGCATCATCACGATTTGTATTTGT 60.128 34.615 0.00 0.00 30.98 2.83
2272 2480 7.065683 ACAGCATCATCACGATTTGTATTTGTA 59.934 33.333 0.00 0.00 30.98 2.41
2273 2481 8.071967 CAGCATCATCACGATTTGTATTTGTAT 58.928 33.333 0.00 0.00 29.21 2.29
2274 2482 8.623903 AGCATCATCACGATTTGTATTTGTATT 58.376 29.630 0.00 0.00 29.21 1.89
2275 2483 9.236691 GCATCATCACGATTTGTATTTGTATTT 57.763 29.630 0.00 0.00 29.21 1.40
2296 2504 9.006215 GTATTTTACAGTAAAATCATTCACGGC 57.994 33.333 27.44 9.78 44.67 5.68
2297 2505 6.811253 TTTACAGTAAAATCATTCACGGCT 57.189 33.333 3.05 0.00 0.00 5.52
2298 2506 7.908827 TTTACAGTAAAATCATTCACGGCTA 57.091 32.000 3.05 0.00 0.00 3.93
2299 2507 5.796350 ACAGTAAAATCATTCACGGCTAC 57.204 39.130 0.00 0.00 0.00 3.58
2300 2508 5.488341 ACAGTAAAATCATTCACGGCTACT 58.512 37.500 0.00 0.00 0.00 2.57
2301 2509 6.636705 ACAGTAAAATCATTCACGGCTACTA 58.363 36.000 0.00 0.00 0.00 1.82
2302 2510 6.757010 ACAGTAAAATCATTCACGGCTACTAG 59.243 38.462 0.00 0.00 0.00 2.57
2303 2511 6.757010 CAGTAAAATCATTCACGGCTACTAGT 59.243 38.462 0.00 0.00 0.00 2.57
2304 2512 7.277981 CAGTAAAATCATTCACGGCTACTAGTT 59.722 37.037 0.00 0.00 0.00 2.24
2305 2513 7.822822 AGTAAAATCATTCACGGCTACTAGTTT 59.177 33.333 0.00 0.00 0.00 2.66
2306 2514 9.090692 GTAAAATCATTCACGGCTACTAGTTTA 57.909 33.333 0.00 0.00 0.00 2.01
2307 2515 8.732746 AAAATCATTCACGGCTACTAGTTTAT 57.267 30.769 0.00 0.00 0.00 1.40
2308 2516 8.732746 AAATCATTCACGGCTACTAGTTTATT 57.267 30.769 0.00 0.00 0.00 1.40
2309 2517 9.826574 AAATCATTCACGGCTACTAGTTTATTA 57.173 29.630 0.00 0.00 0.00 0.98
2310 2518 9.998106 AATCATTCACGGCTACTAGTTTATTAT 57.002 29.630 0.00 0.00 0.00 1.28
2311 2519 9.998106 ATCATTCACGGCTACTAGTTTATTATT 57.002 29.630 0.00 0.00 0.00 1.40
2312 2520 9.472361 TCATTCACGGCTACTAGTTTATTATTC 57.528 33.333 0.00 0.00 0.00 1.75
2313 2521 9.256477 CATTCACGGCTACTAGTTTATTATTCA 57.744 33.333 0.00 0.00 0.00 2.57
2314 2522 8.638685 TTCACGGCTACTAGTTTATTATTCAC 57.361 34.615 0.00 0.00 0.00 3.18
2315 2523 7.774134 TCACGGCTACTAGTTTATTATTCACA 58.226 34.615 0.00 0.00 0.00 3.58
2316 2524 7.919091 TCACGGCTACTAGTTTATTATTCACAG 59.081 37.037 0.00 0.00 0.00 3.66
2317 2525 6.700520 ACGGCTACTAGTTTATTATTCACAGC 59.299 38.462 0.00 0.00 0.00 4.40
2318 2526 6.924060 CGGCTACTAGTTTATTATTCACAGCT 59.076 38.462 0.00 0.00 0.00 4.24
2319 2527 7.096023 CGGCTACTAGTTTATTATTCACAGCTG 60.096 40.741 13.48 13.48 0.00 4.24
2320 2528 7.307455 GGCTACTAGTTTATTATTCACAGCTGC 60.307 40.741 15.27 0.00 0.00 5.25
2321 2529 7.439655 GCTACTAGTTTATTATTCACAGCTGCT 59.560 37.037 15.27 0.00 0.00 4.24
2322 2530 9.319143 CTACTAGTTTATTATTCACAGCTGCTT 57.681 33.333 15.27 0.00 0.00 3.91
2323 2531 7.978982 ACTAGTTTATTATTCACAGCTGCTTG 58.021 34.615 15.27 5.72 0.00 4.01
2324 2532 6.199937 AGTTTATTATTCACAGCTGCTTGG 57.800 37.500 15.27 0.85 0.00 3.61
2325 2533 4.637483 TTATTATTCACAGCTGCTTGGC 57.363 40.909 15.27 0.00 0.00 4.52
2331 2539 2.449464 TCACAGCTGCTTGGCATATTT 58.551 42.857 15.27 0.00 38.13 1.40
2336 2544 4.037208 ACAGCTGCTTGGCATATTTATCAC 59.963 41.667 15.27 0.00 38.13 3.06
2339 2547 5.048224 AGCTGCTTGGCATATTTATCACATC 60.048 40.000 0.00 0.00 38.13 3.06
2342 2550 5.593502 TGCTTGGCATATTTATCACATCACA 59.406 36.000 0.00 0.00 31.71 3.58
2343 2551 6.147581 GCTTGGCATATTTATCACATCACAG 58.852 40.000 0.00 0.00 0.00 3.66
2346 2554 7.728847 TGGCATATTTATCACATCACAGTAC 57.271 36.000 0.00 0.00 0.00 2.73
2347 2555 7.278875 TGGCATATTTATCACATCACAGTACA 58.721 34.615 0.00 0.00 0.00 2.90
2348 2556 7.772757 TGGCATATTTATCACATCACAGTACAA 59.227 33.333 0.00 0.00 0.00 2.41
2350 2558 8.830580 GCATATTTATCACATCACAGTACAACT 58.169 33.333 0.00 0.00 0.00 3.16
2354 2562 8.669946 TTTATCACATCACAGTACAACTTTCA 57.330 30.769 0.00 0.00 0.00 2.69
2355 2563 5.984233 TCACATCACAGTACAACTTTCAC 57.016 39.130 0.00 0.00 0.00 3.18
2356 2564 4.506288 TCACATCACAGTACAACTTTCACG 59.494 41.667 0.00 0.00 0.00 4.35
2357 2565 3.807622 ACATCACAGTACAACTTTCACGG 59.192 43.478 0.00 0.00 0.00 4.94
2358 2566 3.530265 TCACAGTACAACTTTCACGGT 57.470 42.857 0.00 0.00 0.00 4.83
2360 2568 2.217847 CACAGTACAACTTTCACGGTCG 59.782 50.000 0.00 0.00 0.00 4.79
2361 2569 2.099592 ACAGTACAACTTTCACGGTCGA 59.900 45.455 0.00 0.00 0.00 4.20
2362 2570 3.243636 ACAGTACAACTTTCACGGTCGAT 60.244 43.478 0.00 0.00 0.00 3.59
2363 2571 3.739300 CAGTACAACTTTCACGGTCGATT 59.261 43.478 0.00 0.00 0.00 3.34
2364 2572 4.210537 CAGTACAACTTTCACGGTCGATTT 59.789 41.667 0.00 0.00 0.00 2.17
2366 2574 4.720530 ACAACTTTCACGGTCGATTTAC 57.279 40.909 0.00 0.00 0.00 2.01
2369 2577 3.383761 ACTTTCACGGTCGATTTACGTT 58.616 40.909 0.00 0.00 43.13 3.99
2370 2578 3.182972 ACTTTCACGGTCGATTTACGTTG 59.817 43.478 0.00 2.88 43.13 4.10
2372 2580 2.318578 TCACGGTCGATTTACGTTGAC 58.681 47.619 0.00 0.00 43.13 3.18
2373 2581 2.052891 CACGGTCGATTTACGTTGACA 58.947 47.619 0.00 0.00 43.13 3.58
2374 2582 2.053627 ACGGTCGATTTACGTTGACAC 58.946 47.619 0.00 0.00 43.13 3.67
2375 2583 2.052891 CGGTCGATTTACGTTGACACA 58.947 47.619 0.00 0.00 43.13 3.72
2376 2584 2.664568 CGGTCGATTTACGTTGACACAT 59.335 45.455 0.00 0.00 43.13 3.21
2381 2589 3.430556 CGATTTACGTTGACACATCACCA 59.569 43.478 0.00 0.00 33.38 4.17
2382 2590 4.084276 CGATTTACGTTGACACATCACCAA 60.084 41.667 0.00 0.00 33.38 3.67
2383 2591 4.539509 TTTACGTTGACACATCACCAAC 57.460 40.909 0.00 0.00 37.42 3.77
2385 2593 0.591170 CGTTGACACATCACCAACCC 59.409 55.000 0.00 0.00 37.47 4.11
2390 2598 2.376855 TGACACATCACCAACCCCATAA 59.623 45.455 0.00 0.00 0.00 1.90
2394 2602 3.768757 CACATCACCAACCCCATAAACAT 59.231 43.478 0.00 0.00 0.00 2.71
2395 2603 4.952957 CACATCACCAACCCCATAAACATA 59.047 41.667 0.00 0.00 0.00 2.29
2397 2605 3.970842 TCACCAACCCCATAAACATACC 58.029 45.455 0.00 0.00 0.00 2.73
2398 2606 3.333980 TCACCAACCCCATAAACATACCA 59.666 43.478 0.00 0.00 0.00 3.25
2399 2607 3.699038 CACCAACCCCATAAACATACCAG 59.301 47.826 0.00 0.00 0.00 4.00
2400 2608 3.594232 ACCAACCCCATAAACATACCAGA 59.406 43.478 0.00 0.00 0.00 3.86
2401 2609 4.231890 ACCAACCCCATAAACATACCAGAT 59.768 41.667 0.00 0.00 0.00 2.90
2402 2610 5.208121 CCAACCCCATAAACATACCAGATT 58.792 41.667 0.00 0.00 0.00 2.40
2403 2611 5.660864 CCAACCCCATAAACATACCAGATTT 59.339 40.000 0.00 0.00 0.00 2.17
2404 2612 6.183360 CCAACCCCATAAACATACCAGATTTC 60.183 42.308 0.00 0.00 0.00 2.17
2405 2613 6.341408 ACCCCATAAACATACCAGATTTCT 57.659 37.500 0.00 0.00 0.00 2.52
2407 2615 8.057246 ACCCCATAAACATACCAGATTTCTAT 57.943 34.615 0.00 0.00 0.00 1.98
2409 2617 9.367160 CCCCATAAACATACCAGATTTCTATTT 57.633 33.333 0.00 0.00 0.00 1.40
2433 2641 3.334691 TGAGCAAATAAACAGAGTCCGG 58.665 45.455 0.00 0.00 0.00 5.14
2434 2642 2.084546 AGCAAATAAACAGAGTCCGGC 58.915 47.619 0.00 0.00 0.00 6.13
2435 2643 1.202031 GCAAATAAACAGAGTCCGGCG 60.202 52.381 0.00 0.00 0.00 6.46
2439 2656 0.242825 TAAACAGAGTCCGGCGTCAG 59.757 55.000 6.01 0.00 0.00 3.51
2634 2851 3.069318 ACCGCCTCCTCCTCGTTC 61.069 66.667 0.00 0.00 0.00 3.95
2721 2938 3.934391 GACGTCGTCCTTGCCCAGG 62.934 68.421 14.60 0.00 45.64 4.45
2745 2962 1.080093 GACGTTGATGCGGAGGACA 60.080 57.895 0.00 0.00 35.98 4.02
2823 3040 1.811860 GTAGAGTAGCCGCCGGAAA 59.188 57.895 7.68 0.00 0.00 3.13
2884 3101 1.531739 GAGAGCTAGCTCGGATGGGG 61.532 65.000 33.31 0.00 46.90 4.96
2887 3104 2.873525 GCTAGCTCGGATGGGGTCC 61.874 68.421 7.70 0.00 44.10 4.46
2929 3154 1.288752 CACGGTTGGGAATTGGTGC 59.711 57.895 0.00 0.00 0.00 5.01
2986 3211 1.749258 GGAACTGGAACGATGGGGC 60.749 63.158 0.00 0.00 0.00 5.80
3000 3225 2.452600 TGGGGCCAATAAATCAGGAC 57.547 50.000 4.39 0.00 0.00 3.85
3043 3268 2.184322 GATGGTTCGAGAGGCGCA 59.816 61.111 10.83 0.00 40.61 6.09
3050 3275 0.960861 TTCGAGAGGCGCAGAGAGAA 60.961 55.000 10.83 6.23 40.61 2.87
3051 3276 1.063972 CGAGAGGCGCAGAGAGAAG 59.936 63.158 10.83 0.00 0.00 2.85
3080 3305 2.325761 CGCTGGATAATGGCGTAGTAC 58.674 52.381 0.00 0.00 43.28 2.73
3117 3342 8.837788 TTCTGGAGTATGTATGCTTTGATATG 57.162 34.615 0.00 0.00 0.00 1.78
3127 3352 6.918022 TGTATGCTTTGATATGTCTGTACTCG 59.082 38.462 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.128499 AGAGGAGAGATTCGAACATTGACAT 59.872 40.000 0.00 0.00 0.00 3.06
63 64 3.874383 TTTGTGGTTTGAGAGGGATGA 57.126 42.857 0.00 0.00 0.00 2.92
101 102 0.400213 TTCACCGAGGCAACAAGGAT 59.600 50.000 0.00 0.00 38.56 3.24
147 148 3.521727 AGGGGATATCCTATCACACACC 58.478 50.000 21.18 10.32 34.92 4.16
150 151 5.568620 ACAAAGGGGATATCCTATCACAC 57.431 43.478 21.18 2.65 35.80 3.82
166 167 0.041663 CGGTGTGTGCGTTACAAAGG 60.042 55.000 0.00 0.00 41.89 3.11
167 168 0.653636 ACGGTGTGTGCGTTACAAAG 59.346 50.000 0.00 0.00 41.89 2.77
190 191 0.460284 ACGCTACCGAGATGCCTTTG 60.460 55.000 0.00 0.00 38.29 2.77
221 222 6.925718 ACTTGTTCGAGGTAGGTTAGTAAAAC 59.074 38.462 0.00 0.00 0.00 2.43
239 240 1.503542 CGGGATGCAGCACTTGTTC 59.496 57.895 1.26 0.00 0.00 3.18
259 260 0.731417 CTCCCAGATTCAAAGCGCTG 59.269 55.000 12.58 0.00 0.00 5.18
263 264 1.997928 GCGCCTCCCAGATTCAAAGC 61.998 60.000 0.00 0.00 0.00 3.51
273 274 1.378514 GGATTCAAAGCGCCTCCCA 60.379 57.895 2.29 0.00 0.00 4.37
280 281 4.818546 ACTATTCATCTGGGATTCAAAGCG 59.181 41.667 0.00 0.00 0.00 4.68
281 282 7.807977 TTACTATTCATCTGGGATTCAAAGC 57.192 36.000 0.00 0.00 0.00 3.51
348 374 5.008415 AGGATTACACTCGAGGTATTACACG 59.992 44.000 18.41 1.81 0.00 4.49
355 381 4.346730 TGGAAAGGATTACACTCGAGGTA 58.653 43.478 18.41 12.92 0.00 3.08
359 385 6.001460 ACAAAATGGAAAGGATTACACTCGA 58.999 36.000 0.00 0.00 30.36 4.04
361 387 8.027189 GGTTACAAAATGGAAAGGATTACACTC 58.973 37.037 0.00 0.00 30.36 3.51
374 400 5.212745 AGGTTGGAAAGGTTACAAAATGGA 58.787 37.500 0.00 0.00 0.00 3.41
517 544 8.699749 CACATAATGATCATGATGAAATGCAAC 58.300 33.333 31.78 0.00 34.04 4.17
548 575 8.256611 TCAAGTCACTTCATAAAGAATAGTGC 57.743 34.615 0.00 0.00 34.26 4.40
556 583 6.018425 AGCGCATATCAAGTCACTTCATAAAG 60.018 38.462 11.47 0.00 38.54 1.85
578 605 2.159226 AGACCCGTCAAGAATAGAAGCG 60.159 50.000 0.00 0.00 0.00 4.68
607 635 7.119407 CCCAATATGCAGTCTTATTCTCATGAG 59.881 40.741 17.07 17.07 0.00 2.90
610 638 5.709164 GCCCAATATGCAGTCTTATTCTCAT 59.291 40.000 0.00 0.00 0.00 2.90
612 640 5.065914 TGCCCAATATGCAGTCTTATTCTC 58.934 41.667 0.00 0.00 34.05 2.87
622 650 2.691526 ACTTGTCATGCCCAATATGCAG 59.308 45.455 0.00 0.00 42.92 4.41
623 651 2.737544 ACTTGTCATGCCCAATATGCA 58.262 42.857 0.00 0.00 43.97 3.96
624 652 3.709987 GAACTTGTCATGCCCAATATGC 58.290 45.455 0.00 0.00 0.00 3.14
638 666 3.852286 TGTGACACTAACACGAACTTGT 58.148 40.909 7.20 0.00 40.61 3.16
687 715 0.817634 CCCGAAACACTGTTGCTCCA 60.818 55.000 0.00 0.00 0.00 3.86
689 717 0.534203 TCCCCGAAACACTGTTGCTC 60.534 55.000 0.00 0.00 0.00 4.26
694 722 2.649531 TTTCATCCCCGAAACACTGT 57.350 45.000 0.00 0.00 30.00 3.55
724 752 2.527547 GAAGACCAAATGCCACGCCG 62.528 60.000 0.00 0.00 0.00 6.46
731 759 5.622378 CGAAAGTAAGAGAAGACCAAATGC 58.378 41.667 0.00 0.00 0.00 3.56
744 772 4.876107 GGATGATGGAAAGCGAAAGTAAGA 59.124 41.667 0.00 0.00 0.00 2.10
745 773 4.878397 AGGATGATGGAAAGCGAAAGTAAG 59.122 41.667 0.00 0.00 0.00 2.34
748 776 3.356529 AGGATGATGGAAAGCGAAAGT 57.643 42.857 0.00 0.00 0.00 2.66
749 777 4.708726 AAAGGATGATGGAAAGCGAAAG 57.291 40.909 0.00 0.00 0.00 2.62
754 933 7.503902 AGGAATAGTAAAAGGATGATGGAAAGC 59.496 37.037 0.00 0.00 0.00 3.51
755 934 8.986929 AGGAATAGTAAAAGGATGATGGAAAG 57.013 34.615 0.00 0.00 0.00 2.62
760 939 8.525290 AACCAAGGAATAGTAAAAGGATGATG 57.475 34.615 0.00 0.00 0.00 3.07
767 946 6.487103 GCATCGAACCAAGGAATAGTAAAAG 58.513 40.000 0.00 0.00 0.00 2.27
790 969 1.142097 GGACCCTCTTAGCTGACGC 59.858 63.158 0.00 0.00 0.00 5.19
932 1111 2.674852 CGGTGCCATGCTATATCATCAC 59.325 50.000 0.00 1.61 0.00 3.06
967 1146 4.276926 GCCATGTGATTGATAAGGAAGGTC 59.723 45.833 0.00 0.00 0.00 3.85
969 1148 4.209538 TGCCATGTGATTGATAAGGAAGG 58.790 43.478 0.00 0.00 0.00 3.46
970 1149 4.885907 ACTGCCATGTGATTGATAAGGAAG 59.114 41.667 0.00 0.00 0.00 3.46
971 1150 4.858850 ACTGCCATGTGATTGATAAGGAA 58.141 39.130 0.00 0.00 0.00 3.36
972 1151 4.454678 GACTGCCATGTGATTGATAAGGA 58.545 43.478 0.00 0.00 0.00 3.36
1007 1186 2.285220 CGTTAGTCGCCATGGATTGAAG 59.715 50.000 18.40 0.00 0.00 3.02
1008 1187 2.276201 CGTTAGTCGCCATGGATTGAA 58.724 47.619 18.40 0.00 0.00 2.69
1009 1188 1.934589 CGTTAGTCGCCATGGATTGA 58.065 50.000 18.40 6.81 0.00 2.57
1073 1252 0.249322 ACCAGGTTGACGTTGTCGAG 60.249 55.000 0.00 0.00 40.62 4.04
1075 1254 1.545614 CGACCAGGTTGACGTTGTCG 61.546 60.000 13.42 13.42 41.16 4.35
1085 1264 3.385749 CTATGGCGGCGACCAGGTT 62.386 63.158 23.21 12.62 44.71 3.50
1102 1281 2.496817 GAAGATGTCTCCGCCGCT 59.503 61.111 0.00 0.00 0.00 5.52
1103 1282 2.956964 CGAAGATGTCTCCGCCGC 60.957 66.667 0.00 0.00 0.00 6.53
1108 1287 1.825474 TGGTCTTCCGAAGATGTCTCC 59.175 52.381 13.92 10.28 40.18 3.71
1113 1292 1.084370 GCCGTGGTCTTCCGAAGATG 61.084 60.000 13.92 5.20 40.18 2.90
1114 1293 1.218316 GCCGTGGTCTTCCGAAGAT 59.782 57.895 13.92 0.00 40.18 2.40
1131 1310 1.664965 GCCGATACCAGGACATCGC 60.665 63.158 17.72 11.87 42.05 4.58
1153 1332 2.980233 GCCAACAGCTTGCTCGGT 60.980 61.111 0.00 0.00 38.99 4.69
1166 1345 4.966787 GTTCTGGGTGCCGGCCAA 62.967 66.667 26.77 2.06 0.00 4.52
1170 1349 3.365265 GCTTGTTCTGGGTGCCGG 61.365 66.667 0.00 0.00 0.00 6.13
1612 1813 3.509388 GAAGGTGTCGATGAACGGT 57.491 52.632 0.00 0.00 42.82 4.83
1722 1923 1.202200 CCTCGTACCTCAAGAAGAGCG 60.202 57.143 0.00 0.00 43.31 5.03
1877 2078 1.553690 CCCGTCCTGTTCACCTCCAT 61.554 60.000 0.00 0.00 0.00 3.41
2049 2256 5.234543 GGCCTACATACGAATTTTCTCTGAC 59.765 44.000 0.00 0.00 0.00 3.51
2059 2266 4.056050 GACAAATCGGCCTACATACGAAT 58.944 43.478 0.00 0.00 40.27 3.34
2060 2267 3.119065 TGACAAATCGGCCTACATACGAA 60.119 43.478 0.00 0.00 40.27 3.85
2061 2268 2.427812 TGACAAATCGGCCTACATACGA 59.572 45.455 0.00 0.00 41.20 3.43
2062 2269 2.816689 TGACAAATCGGCCTACATACG 58.183 47.619 0.00 0.00 0.00 3.06
2063 2270 3.002348 GCTTGACAAATCGGCCTACATAC 59.998 47.826 0.00 0.00 0.00 2.39
2064 2271 3.202906 GCTTGACAAATCGGCCTACATA 58.797 45.455 0.00 0.00 0.00 2.29
2065 2272 2.017049 GCTTGACAAATCGGCCTACAT 58.983 47.619 0.00 0.00 0.00 2.29
2066 2273 1.271108 TGCTTGACAAATCGGCCTACA 60.271 47.619 0.00 0.00 0.00 2.74
2067 2274 1.448985 TGCTTGACAAATCGGCCTAC 58.551 50.000 0.00 0.00 0.00 3.18
2068 2275 2.083774 CTTGCTTGACAAATCGGCCTA 58.916 47.619 0.00 0.00 37.96 3.93
2069 2276 0.883833 CTTGCTTGACAAATCGGCCT 59.116 50.000 0.00 0.00 37.96 5.19
2070 2277 0.598065 ACTTGCTTGACAAATCGGCC 59.402 50.000 0.00 0.00 37.96 6.13
2071 2278 2.422276 AACTTGCTTGACAAATCGGC 57.578 45.000 0.00 0.00 37.96 5.54
2072 2279 7.967854 TGAAATATAACTTGCTTGACAAATCGG 59.032 33.333 0.00 0.00 37.96 4.18
2073 2280 8.894409 TGAAATATAACTTGCTTGACAAATCG 57.106 30.769 0.00 0.00 37.96 3.34
2074 2281 9.846248 ACTGAAATATAACTTGCTTGACAAATC 57.154 29.630 0.00 0.00 37.96 2.17
2075 2282 9.630098 CACTGAAATATAACTTGCTTGACAAAT 57.370 29.630 0.00 0.00 37.96 2.32
2076 2283 8.629158 ACACTGAAATATAACTTGCTTGACAAA 58.371 29.630 0.00 0.00 37.96 2.83
2077 2284 8.165239 ACACTGAAATATAACTTGCTTGACAA 57.835 30.769 0.00 0.00 36.62 3.18
2078 2285 7.744087 ACACTGAAATATAACTTGCTTGACA 57.256 32.000 0.00 0.00 0.00 3.58
2079 2286 8.936864 ACTACACTGAAATATAACTTGCTTGAC 58.063 33.333 0.00 0.00 0.00 3.18
2103 2310 9.398538 TGACAAATTTGTTAAGGTGTACTTACT 57.601 29.630 24.02 0.00 41.24 2.24
2104 2311 9.659830 CTGACAAATTTGTTAAGGTGTACTTAC 57.340 33.333 24.02 7.47 41.24 2.34
2105 2312 9.616156 TCTGACAAATTTGTTAAGGTGTACTTA 57.384 29.630 24.02 5.30 42.43 2.24
2106 2313 8.514330 TCTGACAAATTTGTTAAGGTGTACTT 57.486 30.769 24.02 0.00 42.43 2.24
2107 2314 8.514330 TTCTGACAAATTTGTTAAGGTGTACT 57.486 30.769 24.02 0.00 42.43 2.73
2110 2317 9.965824 CTTATTCTGACAAATTTGTTAAGGTGT 57.034 29.630 24.02 14.97 42.43 4.16
2111 2318 8.915654 GCTTATTCTGACAAATTTGTTAAGGTG 58.084 33.333 26.15 13.96 42.43 4.00
2112 2319 8.637986 TGCTTATTCTGACAAATTTGTTAAGGT 58.362 29.630 26.15 19.51 42.43 3.50
2113 2320 9.474920 TTGCTTATTCTGACAAATTTGTTAAGG 57.525 29.630 26.15 17.45 42.43 2.69
2115 2322 8.977505 GCTTGCTTATTCTGACAAATTTGTTAA 58.022 29.630 24.02 17.95 42.43 2.01
2116 2323 8.359642 AGCTTGCTTATTCTGACAAATTTGTTA 58.640 29.630 24.02 18.99 42.43 2.41
2117 2324 7.212274 AGCTTGCTTATTCTGACAAATTTGTT 58.788 30.769 24.02 11.02 42.43 2.83
2118 2325 6.752168 AGCTTGCTTATTCTGACAAATTTGT 58.248 32.000 23.49 23.49 45.65 2.83
2119 2326 6.864685 TGAGCTTGCTTATTCTGACAAATTTG 59.135 34.615 16.67 16.67 0.00 2.32
2120 2327 6.985117 TGAGCTTGCTTATTCTGACAAATTT 58.015 32.000 0.00 0.00 0.00 1.82
2121 2328 6.579666 TGAGCTTGCTTATTCTGACAAATT 57.420 33.333 0.00 0.00 0.00 1.82
2122 2329 6.579666 TTGAGCTTGCTTATTCTGACAAAT 57.420 33.333 0.00 0.00 0.00 2.32
2123 2330 6.389830 TTTGAGCTTGCTTATTCTGACAAA 57.610 33.333 0.00 0.00 0.00 2.83
2124 2331 6.389830 TTTTGAGCTTGCTTATTCTGACAA 57.610 33.333 0.00 0.00 0.00 3.18
2125 2332 6.384224 CATTTTGAGCTTGCTTATTCTGACA 58.616 36.000 0.00 0.00 0.00 3.58
2126 2333 5.803967 CCATTTTGAGCTTGCTTATTCTGAC 59.196 40.000 0.00 0.00 0.00 3.51
2127 2334 5.477984 ACCATTTTGAGCTTGCTTATTCTGA 59.522 36.000 0.00 0.00 0.00 3.27
2128 2335 5.717119 ACCATTTTGAGCTTGCTTATTCTG 58.283 37.500 0.00 0.00 0.00 3.02
2129 2336 5.713861 AGACCATTTTGAGCTTGCTTATTCT 59.286 36.000 0.00 0.00 0.00 2.40
2130 2337 5.958955 AGACCATTTTGAGCTTGCTTATTC 58.041 37.500 0.00 0.00 0.00 1.75
2131 2338 5.990120 AGACCATTTTGAGCTTGCTTATT 57.010 34.783 0.00 0.00 0.00 1.40
2132 2339 5.990120 AAGACCATTTTGAGCTTGCTTAT 57.010 34.783 0.00 0.00 0.00 1.73
2133 2340 5.301551 TGAAAGACCATTTTGAGCTTGCTTA 59.698 36.000 0.00 0.00 0.00 3.09
2134 2341 4.099881 TGAAAGACCATTTTGAGCTTGCTT 59.900 37.500 0.00 0.00 0.00 3.91
2135 2342 3.638160 TGAAAGACCATTTTGAGCTTGCT 59.362 39.130 0.00 0.00 0.00 3.91
2136 2343 3.981211 TGAAAGACCATTTTGAGCTTGC 58.019 40.909 0.00 0.00 0.00 4.01
2137 2344 7.486802 AATTTGAAAGACCATTTTGAGCTTG 57.513 32.000 0.00 0.00 0.00 4.01
2138 2345 7.989170 AGAAATTTGAAAGACCATTTTGAGCTT 59.011 29.630 0.00 0.00 0.00 3.74
2139 2346 7.440255 CAGAAATTTGAAAGACCATTTTGAGCT 59.560 33.333 0.00 0.00 0.00 4.09
2140 2347 7.570161 CAGAAATTTGAAAGACCATTTTGAGC 58.430 34.615 0.00 0.00 0.00 4.26
2141 2348 7.225145 TGCAGAAATTTGAAAGACCATTTTGAG 59.775 33.333 0.00 0.00 0.00 3.02
2142 2349 7.046652 TGCAGAAATTTGAAAGACCATTTTGA 58.953 30.769 0.00 0.00 0.00 2.69
2143 2350 7.249186 TGCAGAAATTTGAAAGACCATTTTG 57.751 32.000 0.00 0.00 0.00 2.44
2144 2351 8.347035 CAATGCAGAAATTTGAAAGACCATTTT 58.653 29.630 0.00 0.00 0.00 1.82
2145 2352 7.520937 GCAATGCAGAAATTTGAAAGACCATTT 60.521 33.333 0.00 0.00 0.00 2.32
2146 2353 6.072893 GCAATGCAGAAATTTGAAAGACCATT 60.073 34.615 0.00 0.00 0.00 3.16
2147 2354 5.410439 GCAATGCAGAAATTTGAAAGACCAT 59.590 36.000 0.00 0.00 0.00 3.55
2148 2355 4.751098 GCAATGCAGAAATTTGAAAGACCA 59.249 37.500 0.00 0.00 0.00 4.02
2149 2356 4.152938 GGCAATGCAGAAATTTGAAAGACC 59.847 41.667 7.79 0.00 0.00 3.85
2150 2357 4.152938 GGGCAATGCAGAAATTTGAAAGAC 59.847 41.667 7.79 0.00 0.00 3.01
2151 2358 4.317488 GGGCAATGCAGAAATTTGAAAGA 58.683 39.130 7.79 0.00 0.00 2.52
2152 2359 3.437741 GGGGCAATGCAGAAATTTGAAAG 59.562 43.478 7.79 0.00 0.00 2.62
2153 2360 3.181447 TGGGGCAATGCAGAAATTTGAAA 60.181 39.130 7.79 0.00 0.00 2.69
2154 2361 2.371179 TGGGGCAATGCAGAAATTTGAA 59.629 40.909 7.79 0.00 0.00 2.69
2155 2362 1.976404 TGGGGCAATGCAGAAATTTGA 59.024 42.857 7.79 0.00 0.00 2.69
2156 2363 2.476126 TGGGGCAATGCAGAAATTTG 57.524 45.000 7.79 0.00 0.00 2.32
2177 2384 9.713740 GTGATGAGTATGACAAAAGAATTGATC 57.286 33.333 0.00 0.00 0.00 2.92
2178 2385 9.458727 AGTGATGAGTATGACAAAAGAATTGAT 57.541 29.630 0.00 0.00 0.00 2.57
2179 2386 8.853077 AGTGATGAGTATGACAAAAGAATTGA 57.147 30.769 0.00 0.00 0.00 2.57
2182 2389 9.950496 ACTTAGTGATGAGTATGACAAAAGAAT 57.050 29.630 0.00 0.00 0.00 2.40
2201 2408 8.398665 GCTGAGGAATTTGGTTAATACTTAGTG 58.601 37.037 0.00 0.00 0.00 2.74
2205 2413 7.451566 ACAAGCTGAGGAATTTGGTTAATACTT 59.548 33.333 0.00 0.00 0.00 2.24
2207 2415 7.094377 TGACAAGCTGAGGAATTTGGTTAATAC 60.094 37.037 0.00 0.00 0.00 1.89
2210 2418 5.136828 TGACAAGCTGAGGAATTTGGTTAA 58.863 37.500 0.00 0.00 0.00 2.01
2213 2421 3.228188 TGACAAGCTGAGGAATTTGGT 57.772 42.857 0.00 0.00 0.00 3.67
2220 2428 1.476891 GGACGTATGACAAGCTGAGGA 59.523 52.381 0.00 0.00 0.00 3.71
2221 2429 1.478510 AGGACGTATGACAAGCTGAGG 59.521 52.381 0.00 0.00 0.00 3.86
2222 2430 2.164422 TGAGGACGTATGACAAGCTGAG 59.836 50.000 0.00 0.00 0.00 3.35
2227 2435 2.263077 GTGCTGAGGACGTATGACAAG 58.737 52.381 0.00 0.00 0.00 3.16
2230 2438 1.914634 CTGTGCTGAGGACGTATGAC 58.085 55.000 0.00 0.00 0.00 3.06
2236 2444 0.461516 ATGATGCTGTGCTGAGGACG 60.462 55.000 0.00 0.00 0.00 4.79
2238 2446 0.906775 TGATGATGCTGTGCTGAGGA 59.093 50.000 0.00 0.00 0.00 3.71
2239 2447 1.015109 GTGATGATGCTGTGCTGAGG 58.985 55.000 0.00 0.00 0.00 3.86
2240 2448 0.651031 CGTGATGATGCTGTGCTGAG 59.349 55.000 0.00 0.00 0.00 3.35
2241 2449 0.247185 TCGTGATGATGCTGTGCTGA 59.753 50.000 0.00 0.00 0.00 4.26
2244 2452 2.159476 ACAAATCGTGATGATGCTGTGC 60.159 45.455 2.79 0.00 37.39 4.57
2245 2453 3.752412 ACAAATCGTGATGATGCTGTG 57.248 42.857 2.79 0.00 37.39 3.66
2246 2454 6.127925 ACAAATACAAATCGTGATGATGCTGT 60.128 34.615 7.52 7.52 37.39 4.40
2247 2455 6.260377 ACAAATACAAATCGTGATGATGCTG 58.740 36.000 0.00 0.00 37.39 4.41
2248 2456 6.441093 ACAAATACAAATCGTGATGATGCT 57.559 33.333 0.00 0.00 37.39 3.79
2271 2479 8.952278 AGCCGTGAATGATTTTACTGTAAAATA 58.048 29.630 28.81 20.05 45.52 1.40
2273 2481 7.209471 AGCCGTGAATGATTTTACTGTAAAA 57.791 32.000 23.43 23.43 41.38 1.52
2274 2482 6.811253 AGCCGTGAATGATTTTACTGTAAA 57.189 33.333 8.84 8.84 0.00 2.01
2275 2483 7.101054 AGTAGCCGTGAATGATTTTACTGTAA 58.899 34.615 0.00 0.00 0.00 2.41
2276 2484 6.636705 AGTAGCCGTGAATGATTTTACTGTA 58.363 36.000 0.00 0.00 0.00 2.74
2277 2485 5.488341 AGTAGCCGTGAATGATTTTACTGT 58.512 37.500 0.00 0.00 0.00 3.55
2278 2486 6.757010 ACTAGTAGCCGTGAATGATTTTACTG 59.243 38.462 0.00 0.00 0.00 2.74
2279 2487 6.875076 ACTAGTAGCCGTGAATGATTTTACT 58.125 36.000 0.00 0.00 0.00 2.24
2280 2488 7.535489 AACTAGTAGCCGTGAATGATTTTAC 57.465 36.000 0.00 0.00 0.00 2.01
2281 2489 9.826574 ATAAACTAGTAGCCGTGAATGATTTTA 57.173 29.630 0.00 0.00 0.00 1.52
2282 2490 8.732746 ATAAACTAGTAGCCGTGAATGATTTT 57.267 30.769 0.00 0.00 0.00 1.82
2283 2491 8.732746 AATAAACTAGTAGCCGTGAATGATTT 57.267 30.769 0.00 0.00 0.00 2.17
2284 2492 9.998106 ATAATAAACTAGTAGCCGTGAATGATT 57.002 29.630 0.00 0.00 0.00 2.57
2285 2493 9.998106 AATAATAAACTAGTAGCCGTGAATGAT 57.002 29.630 0.00 0.00 0.00 2.45
2286 2494 9.472361 GAATAATAAACTAGTAGCCGTGAATGA 57.528 33.333 0.00 0.00 0.00 2.57
2287 2495 9.256477 TGAATAATAAACTAGTAGCCGTGAATG 57.744 33.333 0.00 0.00 0.00 2.67
2288 2496 9.257651 GTGAATAATAAACTAGTAGCCGTGAAT 57.742 33.333 0.00 0.00 0.00 2.57
2289 2497 8.252417 TGTGAATAATAAACTAGTAGCCGTGAA 58.748 33.333 0.00 0.00 0.00 3.18
2290 2498 7.774134 TGTGAATAATAAACTAGTAGCCGTGA 58.226 34.615 0.00 0.00 0.00 4.35
2291 2499 7.306632 GCTGTGAATAATAAACTAGTAGCCGTG 60.307 40.741 0.00 0.00 0.00 4.94
2292 2500 6.700520 GCTGTGAATAATAAACTAGTAGCCGT 59.299 38.462 0.00 0.00 0.00 5.68
2293 2501 6.924060 AGCTGTGAATAATAAACTAGTAGCCG 59.076 38.462 0.00 0.00 0.00 5.52
2294 2502 7.307455 GCAGCTGTGAATAATAAACTAGTAGCC 60.307 40.741 16.64 0.00 0.00 3.93
2295 2503 7.439655 AGCAGCTGTGAATAATAAACTAGTAGC 59.560 37.037 16.64 0.00 0.00 3.58
2296 2504 8.879342 AGCAGCTGTGAATAATAAACTAGTAG 57.121 34.615 16.64 0.00 0.00 2.57
2297 2505 9.098355 CAAGCAGCTGTGAATAATAAACTAGTA 57.902 33.333 16.64 0.00 0.00 1.82
2298 2506 7.066284 CCAAGCAGCTGTGAATAATAAACTAGT 59.934 37.037 16.64 0.00 0.00 2.57
2299 2507 7.412853 CCAAGCAGCTGTGAATAATAAACTAG 58.587 38.462 16.64 0.00 0.00 2.57
2300 2508 6.183360 GCCAAGCAGCTGTGAATAATAAACTA 60.183 38.462 16.64 0.00 0.00 2.24
2301 2509 5.393461 GCCAAGCAGCTGTGAATAATAAACT 60.393 40.000 16.64 0.00 0.00 2.66
2302 2510 4.800471 GCCAAGCAGCTGTGAATAATAAAC 59.200 41.667 16.64 0.00 0.00 2.01
2303 2511 4.462132 TGCCAAGCAGCTGTGAATAATAAA 59.538 37.500 16.64 0.00 33.32 1.40
2304 2512 4.015764 TGCCAAGCAGCTGTGAATAATAA 58.984 39.130 16.64 0.00 33.32 1.40
2305 2513 3.619419 TGCCAAGCAGCTGTGAATAATA 58.381 40.909 16.64 0.00 33.32 0.98
2306 2514 2.449464 TGCCAAGCAGCTGTGAATAAT 58.551 42.857 16.64 0.00 33.32 1.28
2307 2515 1.908344 TGCCAAGCAGCTGTGAATAA 58.092 45.000 16.64 0.00 33.32 1.40
2308 2516 2.133281 ATGCCAAGCAGCTGTGAATA 57.867 45.000 16.64 0.00 43.65 1.75
2309 2517 2.133281 TATGCCAAGCAGCTGTGAAT 57.867 45.000 16.64 6.64 43.65 2.57
2310 2518 2.133281 ATATGCCAAGCAGCTGTGAA 57.867 45.000 16.64 0.00 43.65 3.18
2311 2519 2.133281 AATATGCCAAGCAGCTGTGA 57.867 45.000 16.64 0.00 43.65 3.58
2312 2520 2.953466 AAATATGCCAAGCAGCTGTG 57.047 45.000 16.64 6.46 43.65 3.66
2313 2521 4.037208 GTGATAAATATGCCAAGCAGCTGT 59.963 41.667 16.64 0.00 43.65 4.40
2314 2522 4.037089 TGTGATAAATATGCCAAGCAGCTG 59.963 41.667 10.11 10.11 43.65 4.24
2315 2523 4.209538 TGTGATAAATATGCCAAGCAGCT 58.790 39.130 0.00 0.00 43.65 4.24
2316 2524 4.572985 TGTGATAAATATGCCAAGCAGC 57.427 40.909 0.00 0.00 43.65 5.25
2317 2525 6.147581 GTGATGTGATAAATATGCCAAGCAG 58.852 40.000 0.00 0.00 43.65 4.24
2318 2526 5.593502 TGTGATGTGATAAATATGCCAAGCA 59.406 36.000 0.00 0.00 44.86 3.91
2319 2527 6.075762 TGTGATGTGATAAATATGCCAAGC 57.924 37.500 0.00 0.00 0.00 4.01
2320 2528 7.268199 ACTGTGATGTGATAAATATGCCAAG 57.732 36.000 0.00 0.00 0.00 3.61
2321 2529 7.772757 TGTACTGTGATGTGATAAATATGCCAA 59.227 33.333 0.00 0.00 0.00 4.52
2322 2530 7.278875 TGTACTGTGATGTGATAAATATGCCA 58.721 34.615 0.00 0.00 0.00 4.92
2323 2531 7.728847 TGTACTGTGATGTGATAAATATGCC 57.271 36.000 0.00 0.00 0.00 4.40
2324 2532 8.830580 AGTTGTACTGTGATGTGATAAATATGC 58.169 33.333 0.00 0.00 0.00 3.14
2331 2539 6.364976 CGTGAAAGTTGTACTGTGATGTGATA 59.635 38.462 0.00 0.00 0.00 2.15
2336 2544 3.807622 ACCGTGAAAGTTGTACTGTGATG 59.192 43.478 0.00 0.00 0.00 3.07
2339 2547 2.217847 CGACCGTGAAAGTTGTACTGTG 59.782 50.000 0.00 0.00 0.00 3.66
2342 2550 3.655276 ATCGACCGTGAAAGTTGTACT 57.345 42.857 0.00 0.00 0.00 2.73
2343 2551 4.720530 AAATCGACCGTGAAAGTTGTAC 57.279 40.909 0.00 0.00 0.00 2.90
2346 2554 3.182972 ACGTAAATCGACCGTGAAAGTTG 59.817 43.478 0.00 0.00 42.86 3.16
2347 2555 3.383761 ACGTAAATCGACCGTGAAAGTT 58.616 40.909 0.00 0.00 42.86 2.66
2348 2556 3.017265 ACGTAAATCGACCGTGAAAGT 57.983 42.857 0.00 0.00 42.86 2.66
2350 2558 3.182173 GTCAACGTAAATCGACCGTGAAA 59.818 43.478 0.00 0.00 42.86 2.69
2351 2559 2.725723 GTCAACGTAAATCGACCGTGAA 59.274 45.455 0.00 0.00 42.86 3.18
2352 2560 2.287487 TGTCAACGTAAATCGACCGTGA 60.287 45.455 0.00 0.00 42.86 4.35
2353 2561 2.052891 TGTCAACGTAAATCGACCGTG 58.947 47.619 0.00 0.00 42.86 4.94
2354 2562 2.053627 GTGTCAACGTAAATCGACCGT 58.946 47.619 0.00 0.00 42.86 4.83
2355 2563 2.052891 TGTGTCAACGTAAATCGACCG 58.947 47.619 0.00 0.00 42.86 4.79
2356 2564 3.676172 TGATGTGTCAACGTAAATCGACC 59.324 43.478 0.00 0.00 42.86 4.79
2357 2565 4.433805 GGTGATGTGTCAACGTAAATCGAC 60.434 45.833 0.00 0.00 43.23 4.20
2358 2566 3.676172 GGTGATGTGTCAACGTAAATCGA 59.324 43.478 0.00 0.00 43.23 3.59
2360 2568 5.144359 GTTGGTGATGTGTCAACGTAAATC 58.856 41.667 0.00 0.00 45.31 2.17
2361 2569 4.023536 GGTTGGTGATGTGTCAACGTAAAT 60.024 41.667 0.00 0.00 45.31 1.40
2362 2570 3.312973 GGTTGGTGATGTGTCAACGTAAA 59.687 43.478 0.00 0.00 45.31 2.01
2363 2571 2.873472 GGTTGGTGATGTGTCAACGTAA 59.127 45.455 0.00 0.00 45.31 3.18
2364 2572 2.485903 GGTTGGTGATGTGTCAACGTA 58.514 47.619 0.00 0.00 45.31 3.57
2366 2574 0.591170 GGGTTGGTGATGTGTCAACG 59.409 55.000 0.00 0.00 45.31 4.10
2369 2577 0.776810 ATGGGGTTGGTGATGTGTCA 59.223 50.000 0.00 0.00 0.00 3.58
2370 2578 2.799126 TATGGGGTTGGTGATGTGTC 57.201 50.000 0.00 0.00 0.00 3.67
2372 2580 3.161067 TGTTTATGGGGTTGGTGATGTG 58.839 45.455 0.00 0.00 0.00 3.21
2373 2581 3.534357 TGTTTATGGGGTTGGTGATGT 57.466 42.857 0.00 0.00 0.00 3.06
2374 2582 4.340950 GGTATGTTTATGGGGTTGGTGATG 59.659 45.833 0.00 0.00 0.00 3.07
2375 2583 4.017037 TGGTATGTTTATGGGGTTGGTGAT 60.017 41.667 0.00 0.00 0.00 3.06
2376 2584 3.333980 TGGTATGTTTATGGGGTTGGTGA 59.666 43.478 0.00 0.00 0.00 4.02
2381 2589 6.741724 AGAAATCTGGTATGTTTATGGGGTT 58.258 36.000 0.00 0.00 0.00 4.11
2382 2590 6.341408 AGAAATCTGGTATGTTTATGGGGT 57.659 37.500 0.00 0.00 0.00 4.95
2383 2591 8.940397 AATAGAAATCTGGTATGTTTATGGGG 57.060 34.615 0.00 0.00 0.00 4.96
2409 2617 5.278266 CCGGACTCTGTTTATTTGCTCAAAA 60.278 40.000 0.00 0.00 33.56 2.44
2410 2618 4.215399 CCGGACTCTGTTTATTTGCTCAAA 59.785 41.667 0.00 0.00 34.46 2.69
2411 2619 3.751175 CCGGACTCTGTTTATTTGCTCAA 59.249 43.478 0.00 0.00 0.00 3.02
2412 2620 3.334691 CCGGACTCTGTTTATTTGCTCA 58.665 45.455 0.00 0.00 0.00 4.26
2414 2622 2.084546 GCCGGACTCTGTTTATTTGCT 58.915 47.619 5.05 0.00 0.00 3.91
2415 2623 1.202031 CGCCGGACTCTGTTTATTTGC 60.202 52.381 5.05 0.00 0.00 3.68
2417 2625 2.289195 TGACGCCGGACTCTGTTTATTT 60.289 45.455 5.05 0.00 0.00 1.40
2418 2626 1.274167 TGACGCCGGACTCTGTTTATT 59.726 47.619 5.05 0.00 0.00 1.40
2419 2627 0.892755 TGACGCCGGACTCTGTTTAT 59.107 50.000 5.05 0.00 0.00 1.40
2421 2629 1.006102 CTGACGCCGGACTCTGTTT 60.006 57.895 5.05 0.00 0.00 2.83
2425 2633 3.444805 GCTCTGACGCCGGACTCT 61.445 66.667 5.05 0.00 0.00 3.24
2426 2634 2.995872 AAGCTCTGACGCCGGACTC 61.996 63.158 5.05 0.00 0.00 3.36
2431 2639 3.485431 CAGCAAGCTCTGACGCCG 61.485 66.667 0.00 0.00 36.19 6.46
2433 2641 2.047844 TCCAGCAAGCTCTGACGC 60.048 61.111 4.03 0.00 36.19 5.19
2434 2642 0.735632 GTCTCCAGCAAGCTCTGACG 60.736 60.000 4.03 0.00 36.19 4.35
2435 2643 0.390998 GGTCTCCAGCAAGCTCTGAC 60.391 60.000 4.03 1.22 36.19 3.51
2439 2656 2.817396 GCGGTCTCCAGCAAGCTC 60.817 66.667 0.00 0.00 0.00 4.09
2634 2851 0.253394 AGGAGAAGGGAAAGGAGGGG 60.253 60.000 0.00 0.00 0.00 4.79
2736 2953 3.083997 ACCTCCCATGTCCTCCGC 61.084 66.667 0.00 0.00 0.00 5.54
2745 2962 2.041819 GAGACCCCGACCTCCCAT 60.042 66.667 0.00 0.00 0.00 4.00
2793 3010 4.222847 CTCTACGCCCGCCCCTTC 62.223 72.222 0.00 0.00 0.00 3.46
2823 3040 2.204090 TTCTTCGGGGGAAGCCCT 60.204 61.111 2.01 0.00 44.66 5.19
2864 3081 0.825425 CCCATCCGAGCTAGCTCTCA 60.825 60.000 35.36 24.38 40.69 3.27
2887 3104 2.031012 TCAACTGCAGTCCCAGCG 59.969 61.111 21.95 4.99 36.29 5.18
2951 3176 1.544724 TCCTTCGCCATTTTTCCCAG 58.455 50.000 0.00 0.00 0.00 4.45
2986 3211 3.428862 GCAAACCCGTCCTGATTTATTGG 60.429 47.826 0.00 0.00 0.00 3.16
3041 3266 0.100503 GAGTCGCTCCTTCTCTCTGC 59.899 60.000 0.00 0.00 0.00 4.26
3043 3268 2.775351 CGAGTCGCTCCTTCTCTCT 58.225 57.895 0.00 0.00 0.00 3.10
3080 3305 1.558756 ACTCCAGAAGCTTCTCCCATG 59.441 52.381 26.18 15.04 34.74 3.66
3117 3342 2.787601 TGTTCCACACGAGTACAGAC 57.212 50.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.