Multiple sequence alignment - TraesCS7D01G204400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G204400 chr7D 100.000 2595 0 0 1 2595 162200277 162202871 0.000000e+00 4793.0
1 TraesCS7D01G204400 chr7D 90.338 859 45 16 843 1687 162214364 162215198 0.000000e+00 1092.0
2 TraesCS7D01G204400 chr7D 89.506 486 39 3 1098 1580 162115147 162115623 2.860000e-169 604.0
3 TraesCS7D01G204400 chr7D 93.396 318 19 2 535 850 78687873 78688190 1.090000e-128 470.0
4 TraesCS7D01G204400 chr7D 94.137 307 16 2 538 843 611158642 611158337 1.410000e-127 466.0
5 TraesCS7D01G204400 chr7D 88.256 281 32 1 2253 2533 162193551 162193830 4.140000e-88 335.0
6 TraesCS7D01G204400 chr7D 80.455 440 51 18 1717 2142 162193093 162193511 1.170000e-78 303.0
7 TraesCS7D01G204400 chr7D 87.619 105 12 1 409 513 162214257 162214360 1.260000e-23 121.0
8 TraesCS7D01G204400 chr7D 95.455 44 2 0 2062 2105 162193143 162193186 1.290000e-08 71.3
9 TraesCS7D01G204400 chr7D 87.273 55 6 1 1836 1890 162202017 162202070 7.750000e-06 62.1
10 TraesCS7D01G204400 chr7D 87.273 55 6 1 1741 1794 162202112 162202166 7.750000e-06 62.1
11 TraesCS7D01G204400 chr7D 83.333 66 9 2 1732 1797 162193215 162193278 2.790000e-05 60.2
12 TraesCS7D01G204400 chr7D 100.000 28 0 0 1974 2001 135673220 135673247 5.000000e-03 52.8
13 TraesCS7D01G204400 chr7B 80.961 1644 162 67 912 2494 124236219 124237772 0.000000e+00 1162.0
14 TraesCS7D01G204400 chr7B 87.550 996 77 24 843 1807 124257170 124258149 0.000000e+00 1109.0
15 TraesCS7D01G204400 chr7B 87.879 891 66 21 843 1713 124536342 124537210 0.000000e+00 1009.0
16 TraesCS7D01G204400 chr7B 85.415 1001 78 34 906 1898 124531384 124532324 0.000000e+00 977.0
17 TraesCS7D01G204400 chr7B 92.058 617 34 5 967 1580 124360198 124360802 0.000000e+00 854.0
18 TraesCS7D01G204400 chr7B 86.379 602 50 12 1097 1684 124129428 124130011 1.690000e-176 628.0
19 TraesCS7D01G204400 chr7B 84.865 185 11 8 1639 1807 124363987 124364170 1.230000e-38 171.0
20 TraesCS7D01G204400 chr7B 82.540 189 18 7 1717 1890 124653563 124653751 4.470000e-33 152.0
21 TraesCS7D01G204400 chr7B 87.786 131 13 3 409 538 124257044 124257172 1.610000e-32 150.0
22 TraesCS7D01G204400 chr7B 88.462 104 10 2 435 538 124531247 124531348 9.750000e-25 124.0
23 TraesCS7D01G204400 chr7B 94.340 53 3 0 2480 2532 124238975 124239027 5.950000e-12 82.4
24 TraesCS7D01G204400 chr7B 87.879 66 6 2 1732 1795 124653687 124653752 2.770000e-10 76.8
25 TraesCS7D01G204400 chr7B 97.500 40 1 0 2062 2101 124653613 124653652 4.630000e-08 69.4
26 TraesCS7D01G204400 chr7B 93.333 45 3 0 1846 1890 124237074 124237118 1.670000e-07 67.6
27 TraesCS7D01G204400 chr7B 93.182 44 3 0 2062 2105 124237089 124237132 5.990000e-07 65.8
28 TraesCS7D01G204400 chr7A 84.260 1169 75 38 843 1939 163352956 163354087 0.000000e+00 1038.0
29 TraesCS7D01G204400 chr7A 88.220 747 63 12 843 1566 163360716 163361460 0.000000e+00 869.0
30 TraesCS7D01G204400 chr7A 83.287 718 74 26 906 1580 163234851 163235565 1.020000e-173 619.0
31 TraesCS7D01G204400 chr7A 85.691 601 54 10 1098 1684 163229758 163230340 2.860000e-169 604.0
32 TraesCS7D01G204400 chr7A 80.851 517 59 9 2011 2525 163300893 163301371 1.130000e-98 370.0
33 TraesCS7D01G204400 chr7A 82.840 338 26 14 1619 1937 163300279 163300603 9.150000e-70 274.0
34 TraesCS7D01G204400 chr7A 78.125 416 75 11 8 409 725157867 725157454 1.540000e-62 250.0
35 TraesCS7D01G204400 chr7A 93.407 91 6 0 448 538 163352868 163352958 4.500000e-28 135.0
36 TraesCS7D01G204400 chr7A 100.000 28 0 0 1974 2001 11882508 11882535 5.000000e-03 52.8
37 TraesCS7D01G204400 chr7A 100.000 28 0 0 1974 2001 11929488 11929515 5.000000e-03 52.8
38 TraesCS7D01G204400 chr7A 100.000 28 0 0 1974 2001 174447897 174447870 5.000000e-03 52.8
39 TraesCS7D01G204400 chr4D 93.711 318 18 2 535 850 472441810 472442127 2.340000e-130 475.0
40 TraesCS7D01G204400 chr4D 100.000 29 0 0 1973 2001 15787060 15787032 1.000000e-03 54.7
41 TraesCS7D01G204400 chr4A 94.481 308 15 2 538 843 93621988 93621681 8.400000e-130 473.0
42 TraesCS7D01G204400 chr4A 93.438 320 19 2 530 847 513328315 513327996 8.400000e-130 473.0
43 TraesCS7D01G204400 chr4A 100.000 28 0 0 1974 2001 668698272 668698245 5.000000e-03 52.8
44 TraesCS7D01G204400 chr5A 93.910 312 18 1 535 845 611029900 611029589 1.090000e-128 470.0
45 TraesCS7D01G204400 chr5A 94.137 307 17 1 538 843 630124086 630123780 1.410000e-127 466.0
46 TraesCS7D01G204400 chr5A 93.291 313 20 1 538 849 1838949 1838637 6.540000e-126 460.0
47 TraesCS7D01G204400 chr5A 78.910 422 63 17 10 409 340475799 340476216 1.980000e-66 263.0
48 TraesCS7D01G204400 chr1B 93.060 317 20 2 532 847 683445546 683445861 1.820000e-126 462.0
49 TraesCS7D01G204400 chr1B 80.668 419 58 12 11 409 520376226 520376641 1.170000e-78 303.0
50 TraesCS7D01G204400 chr1B 79.042 334 54 13 16 333 342365526 342365193 5.620000e-52 215.0
51 TraesCS7D01G204400 chr1B 97.727 44 1 0 12 55 10046061 10046104 2.770000e-10 76.8
52 TraesCS7D01G204400 chr5B 79.759 415 53 21 21 411 488859298 488858891 3.290000e-69 272.0
53 TraesCS7D01G204400 chr6D 82.353 323 43 12 94 405 20802455 20802136 4.260000e-68 268.0
54 TraesCS7D01G204400 chr6D 100.000 28 0 0 1974 2001 451070054 451070027 5.000000e-03 52.8
55 TraesCS7D01G204400 chr5D 79.147 422 61 21 10 409 32691522 32691938 1.530000e-67 267.0
56 TraesCS7D01G204400 chr6B 82.178 303 43 8 112 405 35642180 35642480 1.540000e-62 250.0
57 TraesCS7D01G204400 chr6B 77.752 427 59 15 10 412 684432408 684432822 2.010000e-56 230.0
58 TraesCS7D01G204400 chr2D 78.089 429 66 21 6 409 637973601 637974026 1.990000e-61 246.0
59 TraesCS7D01G204400 chr3D 100.000 28 0 0 1974 2001 442524512 442524539 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G204400 chr7D 162200277 162202871 2594 False 1639.066667 4793 91.515333 1 2595 3 chr7D.!!$F5 2594
1 TraesCS7D01G204400 chr7D 162214257 162215198 941 False 606.500000 1092 88.978500 409 1687 2 chr7D.!!$F6 1278
2 TraesCS7D01G204400 chr7B 124536342 124537210 868 False 1009.000000 1009 87.879000 843 1713 1 chr7B.!!$F2 870
3 TraesCS7D01G204400 chr7B 124257044 124258149 1105 False 629.500000 1109 87.668000 409 1807 2 chr7B.!!$F4 1398
4 TraesCS7D01G204400 chr7B 124129428 124130011 583 False 628.000000 628 86.379000 1097 1684 1 chr7B.!!$F1 587
5 TraesCS7D01G204400 chr7B 124531247 124532324 1077 False 550.500000 977 86.938500 435 1898 2 chr7B.!!$F6 1463
6 TraesCS7D01G204400 chr7B 124360198 124364170 3972 False 512.500000 854 88.461500 967 1807 2 chr7B.!!$F5 840
7 TraesCS7D01G204400 chr7B 124236219 124239027 2808 False 344.450000 1162 90.454000 912 2532 4 chr7B.!!$F3 1620
8 TraesCS7D01G204400 chr7A 163360716 163361460 744 False 869.000000 869 88.220000 843 1566 1 chr7A.!!$F5 723
9 TraesCS7D01G204400 chr7A 163234851 163235565 714 False 619.000000 619 83.287000 906 1580 1 chr7A.!!$F4 674
10 TraesCS7D01G204400 chr7A 163229758 163230340 582 False 604.000000 604 85.691000 1098 1684 1 chr7A.!!$F3 586
11 TraesCS7D01G204400 chr7A 163352868 163354087 1219 False 586.500000 1038 88.833500 448 1939 2 chr7A.!!$F7 1491
12 TraesCS7D01G204400 chr7A 163300279 163301371 1092 False 322.000000 370 81.845500 1619 2525 2 chr7A.!!$F6 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 412 0.105039 CTCATACAAGTCTCCCCGGC 59.895 60.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 5746 0.447801 GCAAAGCGTGTATCACCCTG 59.552 55.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.713762 AGAGTCAGAGGAGATTTGTATGAG 57.286 41.667 0.00 0.00 0.00 2.90
24 25 6.430864 AGAGTCAGAGGAGATTTGTATGAGA 58.569 40.000 0.00 0.00 0.00 3.27
25 26 7.068702 AGAGTCAGAGGAGATTTGTATGAGAT 58.931 38.462 0.00 0.00 0.00 2.75
26 27 7.231317 AGAGTCAGAGGAGATTTGTATGAGATC 59.769 40.741 0.00 0.00 0.00 2.75
27 28 7.068702 AGTCAGAGGAGATTTGTATGAGATCT 58.931 38.462 0.00 0.00 33.05 2.75
28 29 7.231317 AGTCAGAGGAGATTTGTATGAGATCTC 59.769 40.741 16.21 16.21 43.12 2.75
29 30 7.014134 GTCAGAGGAGATTTGTATGAGATCTCA 59.986 40.741 27.03 27.03 44.76 3.27
30 31 7.014134 TCAGAGGAGATTTGTATGAGATCTCAC 59.986 40.741 27.37 16.08 44.76 3.51
31 32 6.838090 AGAGGAGATTTGTATGAGATCTCACA 59.162 38.462 27.37 18.49 44.76 3.58
32 33 7.510001 AGAGGAGATTTGTATGAGATCTCACAT 59.490 37.037 27.37 15.28 44.76 3.21
33 34 8.032045 AGGAGATTTGTATGAGATCTCACATT 57.968 34.615 27.37 14.54 44.76 2.71
34 35 9.152327 AGGAGATTTGTATGAGATCTCACATTA 57.848 33.333 27.37 13.50 44.76 1.90
35 36 9.421806 GGAGATTTGTATGAGATCTCACATTAG 57.578 37.037 27.37 0.00 44.76 1.73
40 41 9.978044 TTTGTATGAGATCTCACATTAGATGAG 57.022 33.333 27.37 0.00 43.11 2.90
50 51 8.474710 TCTCACATTAGATGAGATCAATGAGA 57.525 34.615 7.88 0.00 46.01 3.27
51 52 9.091220 TCTCACATTAGATGAGATCAATGAGAT 57.909 33.333 7.88 0.00 46.01 2.75
86 87 8.674263 AAAAATGCATACTCAAACATTTCCAA 57.326 26.923 0.00 0.00 40.77 3.53
87 88 8.674263 AAAATGCATACTCAAACATTTCCAAA 57.326 26.923 0.00 0.00 40.77 3.28
88 89 8.674263 AAATGCATACTCAAACATTTCCAAAA 57.326 26.923 0.00 0.00 38.06 2.44
89 90 8.674263 AATGCATACTCAAACATTTCCAAAAA 57.326 26.923 0.00 0.00 28.54 1.94
134 135 8.514330 TTTGTACAATCTTACAAAGTTCCAGT 57.486 30.769 9.56 0.00 43.72 4.00
135 136 8.514330 TTGTACAATCTTACAAAGTTCCAGTT 57.486 30.769 3.59 0.00 38.69 3.16
136 137 8.149973 TGTACAATCTTACAAAGTTCCAGTTC 57.850 34.615 0.00 0.00 0.00 3.01
137 138 6.635030 ACAATCTTACAAAGTTCCAGTTCC 57.365 37.500 0.00 0.00 0.00 3.62
138 139 6.365520 ACAATCTTACAAAGTTCCAGTTCCT 58.634 36.000 0.00 0.00 0.00 3.36
139 140 7.514721 ACAATCTTACAAAGTTCCAGTTCCTA 58.485 34.615 0.00 0.00 0.00 2.94
140 141 7.996644 ACAATCTTACAAAGTTCCAGTTCCTAA 59.003 33.333 0.00 0.00 0.00 2.69
141 142 9.014297 CAATCTTACAAAGTTCCAGTTCCTAAT 57.986 33.333 0.00 0.00 0.00 1.73
142 143 9.588096 AATCTTACAAAGTTCCAGTTCCTAATT 57.412 29.630 0.00 0.00 0.00 1.40
143 144 8.617290 TCTTACAAAGTTCCAGTTCCTAATTC 57.383 34.615 0.00 0.00 0.00 2.17
144 145 5.941948 ACAAAGTTCCAGTTCCTAATTCG 57.058 39.130 0.00 0.00 0.00 3.34
145 146 5.617252 ACAAAGTTCCAGTTCCTAATTCGA 58.383 37.500 0.00 0.00 0.00 3.71
146 147 5.469084 ACAAAGTTCCAGTTCCTAATTCGAC 59.531 40.000 0.00 0.00 0.00 4.20
147 148 5.485209 AAGTTCCAGTTCCTAATTCGACT 57.515 39.130 0.00 0.00 0.00 4.18
148 149 5.485209 AGTTCCAGTTCCTAATTCGACTT 57.515 39.130 0.00 0.00 0.00 3.01
149 150 6.600882 AGTTCCAGTTCCTAATTCGACTTA 57.399 37.500 0.00 0.00 0.00 2.24
150 151 7.001099 AGTTCCAGTTCCTAATTCGACTTAA 57.999 36.000 0.00 0.00 0.00 1.85
151 152 7.447594 AGTTCCAGTTCCTAATTCGACTTAAA 58.552 34.615 0.00 0.00 0.00 1.52
152 153 8.101419 AGTTCCAGTTCCTAATTCGACTTAAAT 58.899 33.333 0.00 0.00 0.00 1.40
153 154 7.843490 TCCAGTTCCTAATTCGACTTAAATG 57.157 36.000 0.00 0.00 0.00 2.32
154 155 7.617225 TCCAGTTCCTAATTCGACTTAAATGA 58.383 34.615 0.00 0.00 0.00 2.57
155 156 8.098286 TCCAGTTCCTAATTCGACTTAAATGAA 58.902 33.333 0.00 0.00 0.00 2.57
156 157 8.893727 CCAGTTCCTAATTCGACTTAAATGAAT 58.106 33.333 0.00 0.00 33.94 2.57
157 158 9.708222 CAGTTCCTAATTCGACTTAAATGAATG 57.292 33.333 0.00 0.16 32.91 2.67
158 159 9.667107 AGTTCCTAATTCGACTTAAATGAATGA 57.333 29.630 0.00 0.00 32.91 2.57
159 160 9.704098 GTTCCTAATTCGACTTAAATGAATGAC 57.296 33.333 0.00 0.00 32.91 3.06
160 161 9.443323 TTCCTAATTCGACTTAAATGAATGACA 57.557 29.630 0.00 0.00 32.91 3.58
161 162 9.443323 TCCTAATTCGACTTAAATGAATGACAA 57.557 29.630 0.00 0.00 32.91 3.18
189 190 9.903682 AAAAATCTGATGTGAATAGTGTCAAAG 57.096 29.630 0.00 0.00 0.00 2.77
190 191 8.627208 AAATCTGATGTGAATAGTGTCAAAGT 57.373 30.769 0.00 0.00 0.00 2.66
191 192 9.725019 AAATCTGATGTGAATAGTGTCAAAGTA 57.275 29.630 0.00 0.00 0.00 2.24
192 193 8.709386 ATCTGATGTGAATAGTGTCAAAGTAC 57.291 34.615 0.00 0.00 0.00 2.73
193 194 7.896811 TCTGATGTGAATAGTGTCAAAGTACT 58.103 34.615 0.00 0.00 0.00 2.73
194 195 9.020731 TCTGATGTGAATAGTGTCAAAGTACTA 57.979 33.333 0.00 0.00 34.23 1.82
195 196 9.809096 CTGATGTGAATAGTGTCAAAGTACTAT 57.191 33.333 0.00 0.00 40.77 2.12
205 206 8.553459 AGTGTCAAAGTACTATTCATCCAAAG 57.447 34.615 0.00 0.00 0.00 2.77
206 207 7.119846 AGTGTCAAAGTACTATTCATCCAAAGC 59.880 37.037 0.00 0.00 0.00 3.51
207 208 7.119846 GTGTCAAAGTACTATTCATCCAAAGCT 59.880 37.037 0.00 0.00 0.00 3.74
208 209 8.318412 TGTCAAAGTACTATTCATCCAAAGCTA 58.682 33.333 0.00 0.00 0.00 3.32
209 210 8.604890 GTCAAAGTACTATTCATCCAAAGCTAC 58.395 37.037 0.00 0.00 0.00 3.58
210 211 7.769044 TCAAAGTACTATTCATCCAAAGCTACC 59.231 37.037 0.00 0.00 0.00 3.18
211 212 6.176014 AGTACTATTCATCCAAAGCTACCC 57.824 41.667 0.00 0.00 0.00 3.69
212 213 4.439253 ACTATTCATCCAAAGCTACCCC 57.561 45.455 0.00 0.00 0.00 4.95
213 214 4.047883 ACTATTCATCCAAAGCTACCCCT 58.952 43.478 0.00 0.00 0.00 4.79
214 215 5.224441 ACTATTCATCCAAAGCTACCCCTA 58.776 41.667 0.00 0.00 0.00 3.53
215 216 5.852250 ACTATTCATCCAAAGCTACCCCTAT 59.148 40.000 0.00 0.00 0.00 2.57
216 217 5.669798 ATTCATCCAAAGCTACCCCTATT 57.330 39.130 0.00 0.00 0.00 1.73
217 218 4.706842 TCATCCAAAGCTACCCCTATTC 57.293 45.455 0.00 0.00 0.00 1.75
218 219 4.044308 TCATCCAAAGCTACCCCTATTCA 58.956 43.478 0.00 0.00 0.00 2.57
219 220 3.926058 TCCAAAGCTACCCCTATTCAC 57.074 47.619 0.00 0.00 0.00 3.18
220 221 3.186283 TCCAAAGCTACCCCTATTCACA 58.814 45.455 0.00 0.00 0.00 3.58
221 222 3.785887 TCCAAAGCTACCCCTATTCACAT 59.214 43.478 0.00 0.00 0.00 3.21
222 223 4.229582 TCCAAAGCTACCCCTATTCACATT 59.770 41.667 0.00 0.00 0.00 2.71
223 224 4.580580 CCAAAGCTACCCCTATTCACATTC 59.419 45.833 0.00 0.00 0.00 2.67
224 225 4.439253 AAGCTACCCCTATTCACATTCC 57.561 45.455 0.00 0.00 0.00 3.01
225 226 3.393687 AGCTACCCCTATTCACATTCCA 58.606 45.455 0.00 0.00 0.00 3.53
226 227 3.785887 AGCTACCCCTATTCACATTCCAA 59.214 43.478 0.00 0.00 0.00 3.53
227 228 4.229582 AGCTACCCCTATTCACATTCCAAA 59.770 41.667 0.00 0.00 0.00 3.28
228 229 5.103515 AGCTACCCCTATTCACATTCCAAAT 60.104 40.000 0.00 0.00 0.00 2.32
229 230 5.241728 GCTACCCCTATTCACATTCCAAATC 59.758 44.000 0.00 0.00 0.00 2.17
230 231 5.472301 ACCCCTATTCACATTCCAAATCT 57.528 39.130 0.00 0.00 0.00 2.40
231 232 5.842339 ACCCCTATTCACATTCCAAATCTT 58.158 37.500 0.00 0.00 0.00 2.40
232 233 5.893824 ACCCCTATTCACATTCCAAATCTTC 59.106 40.000 0.00 0.00 0.00 2.87
233 234 6.131961 CCCCTATTCACATTCCAAATCTTCT 58.868 40.000 0.00 0.00 0.00 2.85
234 235 6.608808 CCCCTATTCACATTCCAAATCTTCTT 59.391 38.462 0.00 0.00 0.00 2.52
235 236 7.124750 CCCCTATTCACATTCCAAATCTTCTTT 59.875 37.037 0.00 0.00 0.00 2.52
236 237 8.193438 CCCTATTCACATTCCAAATCTTCTTTC 58.807 37.037 0.00 0.00 0.00 2.62
237 238 8.964772 CCTATTCACATTCCAAATCTTCTTTCT 58.035 33.333 0.00 0.00 0.00 2.52
240 241 7.822161 TCACATTCCAAATCTTCTTTCTTCA 57.178 32.000 0.00 0.00 0.00 3.02
241 242 8.236585 TCACATTCCAAATCTTCTTTCTTCAA 57.763 30.769 0.00 0.00 0.00 2.69
242 243 8.863086 TCACATTCCAAATCTTCTTTCTTCAAT 58.137 29.630 0.00 0.00 0.00 2.57
243 244 9.136952 CACATTCCAAATCTTCTTTCTTCAATC 57.863 33.333 0.00 0.00 0.00 2.67
244 245 9.086758 ACATTCCAAATCTTCTTTCTTCAATCT 57.913 29.630 0.00 0.00 0.00 2.40
245 246 9.570488 CATTCCAAATCTTCTTTCTTCAATCTC 57.430 33.333 0.00 0.00 0.00 2.75
246 247 8.930846 TTCCAAATCTTCTTTCTTCAATCTCT 57.069 30.769 0.00 0.00 0.00 3.10
267 268 8.256611 TCTCTAAATGTACATCAGTTTTGAGC 57.743 34.615 18.36 0.00 36.61 4.26
268 269 8.097038 TCTCTAAATGTACATCAGTTTTGAGCT 58.903 33.333 18.36 0.00 36.61 4.09
269 270 8.032952 TCTAAATGTACATCAGTTTTGAGCTG 57.967 34.615 9.23 0.00 36.61 4.24
270 271 6.882610 AAATGTACATCAGTTTTGAGCTGA 57.117 33.333 9.23 0.00 45.59 4.26
303 304 9.734984 TCGAAGTTGTAGACATATCCTATATGA 57.265 33.333 12.63 0.00 0.00 2.15
370 371 8.810652 ATAAGAATTCTTAGAGTTGATCTCGC 57.189 34.615 27.18 0.00 41.24 5.03
371 372 6.214191 AGAATTCTTAGAGTTGATCTCGCA 57.786 37.500 0.88 0.00 46.86 5.10
372 373 6.634805 AGAATTCTTAGAGTTGATCTCGCAA 58.365 36.000 0.88 0.00 46.86 4.85
373 374 7.271511 AGAATTCTTAGAGTTGATCTCGCAAT 58.728 34.615 0.88 0.00 46.86 3.56
374 375 7.437862 AGAATTCTTAGAGTTGATCTCGCAATC 59.562 37.037 0.88 0.00 46.86 2.67
375 376 5.843673 TCTTAGAGTTGATCTCGCAATCT 57.156 39.130 0.00 0.00 46.86 2.40
376 377 5.826586 TCTTAGAGTTGATCTCGCAATCTC 58.173 41.667 0.00 0.00 46.86 2.75
377 378 5.358160 TCTTAGAGTTGATCTCGCAATCTCA 59.642 40.000 0.00 0.00 46.86 3.27
378 379 3.779759 AGAGTTGATCTCGCAATCTCAC 58.220 45.455 0.00 0.00 46.86 3.51
379 380 3.446873 AGAGTTGATCTCGCAATCTCACT 59.553 43.478 0.00 1.90 46.86 3.41
380 381 4.081752 AGAGTTGATCTCGCAATCTCACTT 60.082 41.667 0.00 0.00 46.86 3.16
381 382 5.126222 AGAGTTGATCTCGCAATCTCACTTA 59.874 40.000 0.00 0.00 46.86 2.24
382 383 5.724328 AGTTGATCTCGCAATCTCACTTAA 58.276 37.500 0.00 0.00 0.00 1.85
383 384 6.166279 AGTTGATCTCGCAATCTCACTTAAA 58.834 36.000 0.00 0.00 0.00 1.52
384 385 6.820656 AGTTGATCTCGCAATCTCACTTAAAT 59.179 34.615 0.00 0.00 0.00 1.40
385 386 6.594284 TGATCTCGCAATCTCACTTAAATG 57.406 37.500 0.00 0.00 0.00 2.32
386 387 6.108687 TGATCTCGCAATCTCACTTAAATGT 58.891 36.000 0.00 0.00 0.00 2.71
387 388 7.264947 TGATCTCGCAATCTCACTTAAATGTA 58.735 34.615 0.00 0.00 0.00 2.29
388 389 7.763985 TGATCTCGCAATCTCACTTAAATGTAA 59.236 33.333 0.00 0.00 0.00 2.41
389 390 7.525688 TCTCGCAATCTCACTTAAATGTAAG 57.474 36.000 0.74 0.74 42.23 2.34
390 391 7.320399 TCTCGCAATCTCACTTAAATGTAAGA 58.680 34.615 9.75 0.00 39.36 2.10
391 392 7.981789 TCTCGCAATCTCACTTAAATGTAAGAT 59.018 33.333 9.75 0.00 39.36 2.40
392 393 8.131455 TCGCAATCTCACTTAAATGTAAGATC 57.869 34.615 9.75 0.00 39.36 2.75
393 394 7.981789 TCGCAATCTCACTTAAATGTAAGATCT 59.018 33.333 9.75 0.00 39.36 2.75
394 395 8.272176 CGCAATCTCACTTAAATGTAAGATCTC 58.728 37.037 9.75 0.00 39.36 2.75
395 396 9.102757 GCAATCTCACTTAAATGTAAGATCTCA 57.897 33.333 9.75 0.00 39.36 3.27
407 408 6.716934 TGTAAGATCTCATACAAGTCTCCC 57.283 41.667 5.02 0.00 28.54 4.30
408 409 5.598830 TGTAAGATCTCATACAAGTCTCCCC 59.401 44.000 5.02 0.00 28.54 4.81
409 410 3.226777 AGATCTCATACAAGTCTCCCCG 58.773 50.000 0.00 0.00 0.00 5.73
410 411 1.776662 TCTCATACAAGTCTCCCCGG 58.223 55.000 0.00 0.00 0.00 5.73
411 412 0.105039 CTCATACAAGTCTCCCCGGC 59.895 60.000 0.00 0.00 0.00 6.13
412 413 0.616395 TCATACAAGTCTCCCCGGCA 60.616 55.000 0.00 0.00 0.00 5.69
413 414 0.179073 CATACAAGTCTCCCCGGCAG 60.179 60.000 0.00 0.00 0.00 4.85
414 415 0.617820 ATACAAGTCTCCCCGGCAGT 60.618 55.000 0.00 0.00 0.00 4.40
426 427 0.537371 CCGGCAGTGGAAAAAGACCT 60.537 55.000 0.00 0.00 0.00 3.85
432 433 0.875059 GTGGAAAAAGACCTGCTCCG 59.125 55.000 0.00 0.00 0.00 4.63
453 454 7.055667 TCCGTCAATTTCTAATCTCTATGCT 57.944 36.000 0.00 0.00 0.00 3.79
455 456 7.987458 TCCGTCAATTTCTAATCTCTATGCTTT 59.013 33.333 0.00 0.00 0.00 3.51
461 462 5.220710 TCTAATCTCTATGCTTTCTGCCC 57.779 43.478 0.00 0.00 42.00 5.36
496 497 3.844099 CGAATTAACAACTAAACGCTGCC 59.156 43.478 0.00 0.00 0.00 4.85
529 530 1.203389 ACCACTAGGACCCTTAGCCAA 60.203 52.381 0.00 0.00 38.69 4.52
538 539 1.156736 CCCTTAGCCAACACGTTGAG 58.843 55.000 11.46 3.22 42.93 3.02
539 540 1.156736 CCTTAGCCAACACGTTGAGG 58.843 55.000 11.46 6.28 42.93 3.86
541 542 0.887387 TTAGCCAACACGTTGAGGCC 60.887 55.000 15.94 0.00 42.93 5.19
542 543 1.764571 TAGCCAACACGTTGAGGCCT 61.765 55.000 3.86 3.86 42.93 5.19
543 544 2.617274 GCCAACACGTTGAGGCCTC 61.617 63.158 26.78 26.78 42.93 4.70
544 545 1.966451 CCAACACGTTGAGGCCTCC 60.966 63.158 29.95 14.48 42.93 4.30
545 546 1.071471 CAACACGTTGAGGCCTCCT 59.929 57.895 29.95 6.91 42.93 3.69
546 547 0.535102 CAACACGTTGAGGCCTCCTT 60.535 55.000 29.95 8.48 42.93 3.36
547 548 0.182775 AACACGTTGAGGCCTCCTTT 59.817 50.000 29.95 8.85 31.76 3.11
548 549 1.053424 ACACGTTGAGGCCTCCTTTA 58.947 50.000 29.95 8.52 31.76 1.85
549 550 1.002087 ACACGTTGAGGCCTCCTTTAG 59.998 52.381 29.95 18.45 31.76 1.85
550 551 1.002087 CACGTTGAGGCCTCCTTTAGT 59.998 52.381 29.95 18.46 31.76 2.24
551 552 1.697982 ACGTTGAGGCCTCCTTTAGTT 59.302 47.619 29.95 4.92 31.76 2.24
552 553 2.105993 ACGTTGAGGCCTCCTTTAGTTT 59.894 45.455 29.95 3.23 31.76 2.66
553 554 2.484264 CGTTGAGGCCTCCTTTAGTTTG 59.516 50.000 29.95 5.71 31.76 2.93
554 555 3.751518 GTTGAGGCCTCCTTTAGTTTGA 58.248 45.455 29.95 3.96 31.76 2.69
555 556 4.142038 GTTGAGGCCTCCTTTAGTTTGAA 58.858 43.478 29.95 10.42 31.76 2.69
556 557 4.021102 TGAGGCCTCCTTTAGTTTGAAG 57.979 45.455 29.95 0.00 31.76 3.02
557 558 3.244911 TGAGGCCTCCTTTAGTTTGAAGG 60.245 47.826 29.95 0.00 44.06 3.46
568 569 7.029563 CCTTTAGTTTGAAGGAATTTCATCGG 58.970 38.462 0.00 0.00 45.25 4.18
569 570 7.094377 CCTTTAGTTTGAAGGAATTTCATCGGA 60.094 37.037 0.00 0.00 45.25 4.55
570 571 7.753309 TTAGTTTGAAGGAATTTCATCGGAA 57.247 32.000 0.00 0.00 44.90 4.30
571 572 6.840780 AGTTTGAAGGAATTTCATCGGAAT 57.159 33.333 0.00 0.00 44.90 3.01
572 573 7.232118 AGTTTGAAGGAATTTCATCGGAATT 57.768 32.000 0.00 0.00 44.90 2.17
573 574 7.315890 AGTTTGAAGGAATTTCATCGGAATTC 58.684 34.615 0.00 0.00 44.90 2.17
574 575 7.177392 AGTTTGAAGGAATTTCATCGGAATTCT 59.823 33.333 5.23 0.00 44.90 2.40
575 576 8.458843 GTTTGAAGGAATTTCATCGGAATTCTA 58.541 33.333 5.23 0.00 44.90 2.10
576 577 7.792374 TGAAGGAATTTCATCGGAATTCTAG 57.208 36.000 5.23 0.31 40.82 2.43
577 578 7.564793 TGAAGGAATTTCATCGGAATTCTAGA 58.435 34.615 5.23 6.05 40.82 2.43
578 579 7.712639 TGAAGGAATTTCATCGGAATTCTAGAG 59.287 37.037 5.23 1.32 40.82 2.43
579 580 6.529220 AGGAATTTCATCGGAATTCTAGAGG 58.471 40.000 5.23 7.49 31.93 3.69
580 581 6.327626 AGGAATTTCATCGGAATTCTAGAGGA 59.672 38.462 5.23 9.63 31.93 3.71
581 582 7.017056 AGGAATTTCATCGGAATTCTAGAGGAT 59.983 37.037 15.46 5.52 31.93 3.24
582 583 8.314751 GGAATTTCATCGGAATTCTAGAGGATA 58.685 37.037 15.46 12.54 31.93 2.59
583 584 9.364989 GAATTTCATCGGAATTCTAGAGGATAG 57.635 37.037 15.46 3.63 31.93 2.08
584 585 6.842437 TTCATCGGAATTCTAGAGGATAGG 57.158 41.667 15.46 2.15 0.00 2.57
585 586 6.140968 TCATCGGAATTCTAGAGGATAGGA 57.859 41.667 5.23 0.00 0.00 2.94
586 587 6.736581 TCATCGGAATTCTAGAGGATAGGAT 58.263 40.000 5.23 0.00 0.00 3.24
587 588 7.185565 TCATCGGAATTCTAGAGGATAGGATT 58.814 38.462 5.23 0.00 0.00 3.01
588 589 7.676043 TCATCGGAATTCTAGAGGATAGGATTT 59.324 37.037 5.23 0.00 0.00 2.17
589 590 7.857404 TCGGAATTCTAGAGGATAGGATTTT 57.143 36.000 5.23 0.00 0.00 1.82
590 591 8.263854 TCGGAATTCTAGAGGATAGGATTTTT 57.736 34.615 5.23 0.00 0.00 1.94
591 592 9.375974 TCGGAATTCTAGAGGATAGGATTTTTA 57.624 33.333 5.23 0.00 0.00 1.52
621 622 6.994421 TTTTTCCTTTAGAGCCCTTTGATT 57.006 33.333 0.00 0.00 0.00 2.57
622 623 6.590234 TTTTCCTTTAGAGCCCTTTGATTC 57.410 37.500 0.00 0.00 0.00 2.52
623 624 4.927267 TCCTTTAGAGCCCTTTGATTCA 57.073 40.909 0.00 0.00 0.00 2.57
624 625 5.456921 TCCTTTAGAGCCCTTTGATTCAT 57.543 39.130 0.00 0.00 0.00 2.57
625 626 6.575244 TCCTTTAGAGCCCTTTGATTCATA 57.425 37.500 0.00 0.00 0.00 2.15
626 627 6.595682 TCCTTTAGAGCCCTTTGATTCATAG 58.404 40.000 0.00 0.00 0.00 2.23
627 628 5.767168 CCTTTAGAGCCCTTTGATTCATAGG 59.233 44.000 14.34 14.34 33.40 2.57
628 629 6.409695 CCTTTAGAGCCCTTTGATTCATAGGA 60.410 42.308 20.87 1.95 35.14 2.94
629 630 6.575244 TTAGAGCCCTTTGATTCATAGGAA 57.425 37.500 20.87 7.25 35.14 3.36
630 631 5.659849 AGAGCCCTTTGATTCATAGGAAT 57.340 39.130 20.87 1.48 46.27 3.01
631 632 5.383476 AGAGCCCTTTGATTCATAGGAATG 58.617 41.667 20.87 8.54 43.69 2.67
632 633 4.477249 AGCCCTTTGATTCATAGGAATGG 58.523 43.478 20.87 3.33 43.69 3.16
633 634 4.168675 AGCCCTTTGATTCATAGGAATGGA 59.831 41.667 20.87 0.00 43.69 3.41
634 635 5.082425 GCCCTTTGATTCATAGGAATGGAT 58.918 41.667 20.87 0.00 43.69 3.41
635 636 5.541484 GCCCTTTGATTCATAGGAATGGATT 59.459 40.000 20.87 0.00 43.69 3.01
636 637 6.042437 GCCCTTTGATTCATAGGAATGGATTT 59.958 38.462 20.87 0.00 43.69 2.17
637 638 7.664758 CCCTTTGATTCATAGGAATGGATTTC 58.335 38.462 20.87 0.00 43.69 2.17
638 639 7.508296 CCCTTTGATTCATAGGAATGGATTTCT 59.492 37.037 20.87 0.00 43.69 2.52
639 640 9.578576 CCTTTGATTCATAGGAATGGATTTCTA 57.421 33.333 15.80 0.00 43.69 2.10
671 672 4.503714 GGATTTGTTCCTATCCTCCACA 57.496 45.455 0.00 0.00 41.78 4.17
672 673 5.053978 GGATTTGTTCCTATCCTCCACAT 57.946 43.478 0.00 0.00 41.78 3.21
673 674 5.449553 GGATTTGTTCCTATCCTCCACATT 58.550 41.667 0.00 0.00 41.78 2.71
674 675 5.893824 GGATTTGTTCCTATCCTCCACATTT 59.106 40.000 0.00 0.00 41.78 2.32
675 676 6.381133 GGATTTGTTCCTATCCTCCACATTTT 59.619 38.462 0.00 0.00 41.78 1.82
676 677 7.559897 GGATTTGTTCCTATCCTCCACATTTTA 59.440 37.037 0.00 0.00 41.78 1.52
677 678 9.136323 GATTTGTTCCTATCCTCCACATTTTAT 57.864 33.333 0.00 0.00 0.00 1.40
679 680 9.627123 TTTGTTCCTATCCTCCACATTTTATAG 57.373 33.333 0.00 0.00 0.00 1.31
680 681 7.745717 TGTTCCTATCCTCCACATTTTATAGG 58.254 38.462 0.00 0.00 38.09 2.57
681 682 7.570982 TGTTCCTATCCTCCACATTTTATAGGA 59.429 37.037 0.00 0.00 41.87 2.94
682 683 8.437575 GTTCCTATCCTCCACATTTTATAGGAA 58.562 37.037 14.58 14.58 46.36 3.36
683 684 8.575736 TCCTATCCTCCACATTTTATAGGAAA 57.424 34.615 6.45 0.00 41.08 3.13
684 685 9.009675 TCCTATCCTCCACATTTTATAGGAAAA 57.990 33.333 6.45 0.00 41.08 2.29
685 686 9.813826 CCTATCCTCCACATTTTATAGGAAAAT 57.186 33.333 0.00 0.00 39.68 1.82
703 704 8.512966 AGGAAAATAAAAATGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
712 713 4.908601 TGAGCCTAGACTCAATGGAAAA 57.091 40.909 6.25 0.00 43.59 2.29
713 714 5.241403 TGAGCCTAGACTCAATGGAAAAA 57.759 39.130 6.25 0.00 43.59 1.94
714 715 5.819991 TGAGCCTAGACTCAATGGAAAAAT 58.180 37.500 6.25 0.00 43.59 1.82
715 716 6.248433 TGAGCCTAGACTCAATGGAAAAATT 58.752 36.000 6.25 0.00 43.59 1.82
716 717 6.721208 TGAGCCTAGACTCAATGGAAAAATTT 59.279 34.615 6.25 0.00 43.59 1.82
717 718 7.094205 TGAGCCTAGACTCAATGGAAAAATTTC 60.094 37.037 6.25 0.00 43.59 2.17
718 719 6.950619 AGCCTAGACTCAATGGAAAAATTTCT 59.049 34.615 5.91 0.00 37.35 2.52
719 720 7.452813 AGCCTAGACTCAATGGAAAAATTTCTT 59.547 33.333 5.91 0.00 37.35 2.52
720 721 8.090831 GCCTAGACTCAATGGAAAAATTTCTTT 58.909 33.333 5.91 0.00 37.35 2.52
721 722 9.415544 CCTAGACTCAATGGAAAAATTTCTTTG 57.584 33.333 5.91 9.64 37.35 2.77
722 723 9.415544 CTAGACTCAATGGAAAAATTTCTTTGG 57.584 33.333 15.46 11.40 37.35 3.28
723 724 7.795047 AGACTCAATGGAAAAATTTCTTTGGT 58.205 30.769 15.46 13.21 37.35 3.67
724 725 7.712205 AGACTCAATGGAAAAATTTCTTTGGTG 59.288 33.333 15.46 12.68 37.35 4.17
725 726 7.337938 ACTCAATGGAAAAATTTCTTTGGTGT 58.662 30.769 15.46 13.05 37.35 4.16
726 727 7.495606 ACTCAATGGAAAAATTTCTTTGGTGTC 59.504 33.333 15.46 0.00 37.35 3.67
727 728 7.334090 TCAATGGAAAAATTTCTTTGGTGTCA 58.666 30.769 15.46 2.80 37.35 3.58
728 729 7.826252 TCAATGGAAAAATTTCTTTGGTGTCAA 59.174 29.630 15.46 0.00 37.35 3.18
729 730 8.623030 CAATGGAAAAATTTCTTTGGTGTCAAT 58.377 29.630 5.91 0.00 37.35 2.57
730 731 7.784633 TGGAAAAATTTCTTTGGTGTCAATC 57.215 32.000 5.91 0.00 37.35 2.67
731 732 7.334090 TGGAAAAATTTCTTTGGTGTCAATCA 58.666 30.769 5.91 0.00 37.35 2.57
732 733 7.826252 TGGAAAAATTTCTTTGGTGTCAATCAA 59.174 29.630 5.91 0.00 37.35 2.57
733 734 8.672815 GGAAAAATTTCTTTGGTGTCAATCAAA 58.327 29.630 5.91 3.54 37.35 2.69
736 737 8.961294 AAATTTCTTTGGTGTCAATCAAATGA 57.039 26.923 3.89 0.00 33.19 2.57
748 749 6.182039 TCAATCAAATGACATCTCGTTTCC 57.818 37.500 0.00 0.00 33.97 3.13
749 750 5.939883 TCAATCAAATGACATCTCGTTTCCT 59.060 36.000 0.00 0.00 33.97 3.36
750 751 7.102993 TCAATCAAATGACATCTCGTTTCCTA 58.897 34.615 0.00 0.00 33.97 2.94
751 752 7.770433 TCAATCAAATGACATCTCGTTTCCTAT 59.230 33.333 0.00 0.00 33.97 2.57
752 753 8.400947 CAATCAAATGACATCTCGTTTCCTATT 58.599 33.333 0.00 0.00 33.97 1.73
753 754 7.539712 TCAAATGACATCTCGTTTCCTATTC 57.460 36.000 0.00 0.00 33.97 1.75
754 755 6.538742 TCAAATGACATCTCGTTTCCTATTCC 59.461 38.462 0.00 0.00 33.97 3.01
755 756 5.878406 ATGACATCTCGTTTCCTATTCCT 57.122 39.130 0.00 0.00 0.00 3.36
756 757 5.677319 TGACATCTCGTTTCCTATTCCTT 57.323 39.130 0.00 0.00 0.00 3.36
757 758 5.661458 TGACATCTCGTTTCCTATTCCTTC 58.339 41.667 0.00 0.00 0.00 3.46
758 759 5.422331 TGACATCTCGTTTCCTATTCCTTCT 59.578 40.000 0.00 0.00 0.00 2.85
759 760 5.908341 ACATCTCGTTTCCTATTCCTTCTC 58.092 41.667 0.00 0.00 0.00 2.87
760 761 5.422331 ACATCTCGTTTCCTATTCCTTCTCA 59.578 40.000 0.00 0.00 0.00 3.27
761 762 6.098982 ACATCTCGTTTCCTATTCCTTCTCAT 59.901 38.462 0.00 0.00 0.00 2.90
762 763 7.287927 ACATCTCGTTTCCTATTCCTTCTCATA 59.712 37.037 0.00 0.00 0.00 2.15
763 764 7.278461 TCTCGTTTCCTATTCCTTCTCATAG 57.722 40.000 0.00 0.00 0.00 2.23
764 765 6.265649 TCTCGTTTCCTATTCCTTCTCATAGG 59.734 42.308 0.00 0.00 42.52 2.57
765 766 6.134055 TCGTTTCCTATTCCTTCTCATAGGA 58.866 40.000 4.13 4.13 46.34 2.94
766 767 6.782988 TCGTTTCCTATTCCTTCTCATAGGAT 59.217 38.462 8.42 0.00 46.91 3.24
767 768 7.290248 TCGTTTCCTATTCCTTCTCATAGGATT 59.710 37.037 8.42 0.00 46.91 3.01
768 769 7.934120 CGTTTCCTATTCCTTCTCATAGGATTT 59.066 37.037 8.42 0.00 46.91 2.17
769 770 9.061435 GTTTCCTATTCCTTCTCATAGGATTTG 57.939 37.037 8.42 0.00 46.91 2.32
770 771 8.567198 TTCCTATTCCTTCTCATAGGATTTGA 57.433 34.615 8.42 0.00 46.91 2.69
771 772 8.200024 TCCTATTCCTTCTCATAGGATTTGAG 57.800 38.462 4.13 0.00 44.16 3.02
772 773 8.013072 TCCTATTCCTTCTCATAGGATTTGAGA 58.987 37.037 4.13 0.00 44.16 3.27
773 774 8.824783 CCTATTCCTTCTCATAGGATTTGAGAT 58.175 37.037 4.38 0.00 46.59 2.75
776 777 8.553085 TTCCTTCTCATAGGATTTGAGATACA 57.447 34.615 4.38 0.00 46.59 2.29
777 778 8.733092 TCCTTCTCATAGGATTTGAGATACAT 57.267 34.615 4.38 0.00 46.59 2.29
778 779 8.591940 TCCTTCTCATAGGATTTGAGATACATG 58.408 37.037 4.38 0.00 46.59 3.21
779 780 8.373981 CCTTCTCATAGGATTTGAGATACATGT 58.626 37.037 2.69 2.69 46.59 3.21
780 781 9.421806 CTTCTCATAGGATTTGAGATACATGTC 57.578 37.037 0.00 0.00 46.59 3.06
781 782 8.482852 TCTCATAGGATTTGAGATACATGTCA 57.517 34.615 0.00 0.00 43.49 3.58
782 783 9.097946 TCTCATAGGATTTGAGATACATGTCAT 57.902 33.333 0.00 0.00 43.49 3.06
783 784 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
784 785 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
785 786 9.722184 CATAGGATTTGAGATACATGTCATCTT 57.278 33.333 0.00 0.00 32.86 2.40
793 794 9.551734 TTGAGATACATGTCATCTTATTTCCTG 57.448 33.333 0.00 0.00 32.86 3.86
794 795 8.708378 TGAGATACATGTCATCTTATTTCCTGT 58.292 33.333 0.00 0.00 32.86 4.00
840 841 5.930135 TCCTATCCTATGAACAAAAGAGGC 58.070 41.667 0.00 0.00 0.00 4.70
841 842 5.066593 CCTATCCTATGAACAAAAGAGGCC 58.933 45.833 0.00 0.00 0.00 5.19
947 953 0.248458 CCCACGTTTGACAGCAACAC 60.248 55.000 0.00 0.00 32.79 3.32
952 958 1.533756 CGTTTGACAGCAACACCCAAG 60.534 52.381 0.00 0.00 32.79 3.61
1074 1137 3.048602 CCGACAGGGTGTTCGAGT 58.951 61.111 0.00 0.00 0.00 4.18
1092 1155 2.415857 GAGTCTTCGAGAGCGTACAGAA 59.584 50.000 0.00 0.00 38.98 3.02
1153 1216 2.962569 CTCAGAGCCGACGGTTCA 59.037 61.111 29.14 11.46 35.33 3.18
1156 1219 2.915659 AGAGCCGACGGTTCACCA 60.916 61.111 29.14 0.00 35.33 4.17
1350 1416 2.827642 GACGAGGTCCCGGACGAT 60.828 66.667 11.55 2.50 32.65 3.73
1528 1625 4.742201 CGGCCTCCTGTGACCGTG 62.742 72.222 0.00 0.00 40.77 4.94
1738 5012 0.316204 CTTGCCTTTGCTTCCCACTG 59.684 55.000 0.00 0.00 38.71 3.66
1739 5013 1.747325 TTGCCTTTGCTTCCCACTGC 61.747 55.000 0.00 0.00 38.71 4.40
1740 5014 2.935740 GCCTTTGCTTCCCACTGCC 61.936 63.158 0.00 0.00 33.53 4.85
1788 5091 0.250295 TGGTAGACACCTGCAACTGC 60.250 55.000 0.00 0.00 45.98 4.40
1884 5195 3.543884 GGTAGACACCGGCAATTGA 57.456 52.632 10.34 0.00 34.36 2.57
1890 5201 2.627699 AGACACCGGCAATTGACAATTT 59.372 40.909 12.81 0.00 0.00 1.82
1891 5202 3.823873 AGACACCGGCAATTGACAATTTA 59.176 39.130 12.81 0.00 0.00 1.40
1893 5204 3.572255 ACACCGGCAATTGACAATTTACT 59.428 39.130 12.81 0.00 0.00 2.24
1902 5291 6.526674 GCAATTGACAATTTACTCCCTAAACG 59.473 38.462 10.34 0.00 0.00 3.60
1959 5353 7.858583 ACTTCCTTCGTTGTAAAATAAGTGTC 58.141 34.615 0.00 0.00 0.00 3.67
1960 5354 7.713942 ACTTCCTTCGTTGTAAAATAAGTGTCT 59.286 33.333 0.00 0.00 0.00 3.41
2007 5457 8.530269 TTTTGAGACGGAGAAAGTAATCTAAC 57.470 34.615 0.00 0.00 0.00 2.34
2009 5459 6.853720 TGAGACGGAGAAAGTAATCTAACAG 58.146 40.000 0.00 0.00 0.00 3.16
2032 5568 7.998964 ACAGGTCTATATTTGTTTAGGGAATGG 59.001 37.037 0.00 0.00 0.00 3.16
2037 5573 9.232882 TCTATATTTGTTTAGGGAATGGGTAGT 57.767 33.333 0.00 0.00 0.00 2.73
2072 5608 4.257731 TGCGTAATTCATTTGCTGGTAGA 58.742 39.130 0.00 0.00 0.00 2.59
2105 5641 3.504134 TGGCAATTAACAAGCGTGTGTAT 59.496 39.130 5.91 0.00 38.27 2.29
2142 5679 6.630444 TGGCATGCAAATACAAAACATTTT 57.370 29.167 21.36 0.00 0.00 1.82
2143 5680 7.035840 TGGCATGCAAATACAAAACATTTTT 57.964 28.000 21.36 0.00 0.00 1.94
2144 5681 8.158169 TGGCATGCAAATACAAAACATTTTTA 57.842 26.923 21.36 0.00 0.00 1.52
2145 5682 8.790718 TGGCATGCAAATACAAAACATTTTTAT 58.209 25.926 21.36 0.00 0.00 1.40
2146 5683 9.623350 GGCATGCAAATACAAAACATTTTTATT 57.377 25.926 21.36 0.00 0.00 1.40
2178 5715 2.719739 ACATTTGGCTGAGTGATCCAG 58.280 47.619 0.00 0.00 34.88 3.86
2243 5780 1.403679 CTTTGCCACGTTGTTTCTGGA 59.596 47.619 0.00 0.00 0.00 3.86
2245 5782 1.464734 TGCCACGTTGTTTCTGGAAA 58.535 45.000 0.00 0.00 0.00 3.13
2246 5783 1.819288 TGCCACGTTGTTTCTGGAAAA 59.181 42.857 0.00 0.00 31.33 2.29
2279 5816 1.272769 ACGGTTAGAGGTGAGCACTTC 59.727 52.381 4.75 4.75 37.65 3.01
2301 5838 5.369833 TCTACACCGAAAATCAAAGAACCA 58.630 37.500 0.00 0.00 0.00 3.67
2347 5885 5.467735 AGACAAGAGAATTTGCCAAAAATGC 59.532 36.000 0.00 0.00 0.00 3.56
2351 5889 2.150390 GAATTTGCCAAAAATGCGGGT 58.850 42.857 0.00 0.00 0.00 5.28
2379 5917 8.258007 AGAATTTGTGAGTTGACCGATATTCTA 58.742 33.333 0.00 0.00 29.59 2.10
2401 5939 8.232913 TCTAGGTTTATTGGTTTATGGCATTC 57.767 34.615 4.78 0.00 0.00 2.67
2414 5952 3.907894 TGGCATTCGTTTAGGTGTTTC 57.092 42.857 0.00 0.00 0.00 2.78
2438 5976 5.195379 CGTAGCTAGTTGTTTTGTGTTCAC 58.805 41.667 0.00 0.00 0.00 3.18
2487 6025 2.985896 ACCTAATTGACCATCACACCG 58.014 47.619 0.00 0.00 0.00 4.94
2490 7245 3.869246 CCTAATTGACCATCACACCGTAC 59.131 47.826 0.00 0.00 0.00 3.67
2496 7251 3.258622 TGACCATCACACCGTACACATTA 59.741 43.478 0.00 0.00 0.00 1.90
2532 7287 6.208797 CCCTTTTCCCTAACTTTCCTACTTTG 59.791 42.308 0.00 0.00 0.00 2.77
2533 7288 6.776116 CCTTTTCCCTAACTTTCCTACTTTGT 59.224 38.462 0.00 0.00 0.00 2.83
2534 7289 7.287005 CCTTTTCCCTAACTTTCCTACTTTGTT 59.713 37.037 0.00 0.00 0.00 2.83
2535 7290 7.576861 TTTCCCTAACTTTCCTACTTTGTTG 57.423 36.000 0.00 0.00 0.00 3.33
2536 7291 5.067954 TCCCTAACTTTCCTACTTTGTTGC 58.932 41.667 0.00 0.00 0.00 4.17
2537 7292 4.217767 CCCTAACTTTCCTACTTTGTTGCC 59.782 45.833 0.00 0.00 0.00 4.52
2538 7293 5.070685 CCTAACTTTCCTACTTTGTTGCCT 58.929 41.667 0.00 0.00 0.00 4.75
2539 7294 5.181433 CCTAACTTTCCTACTTTGTTGCCTC 59.819 44.000 0.00 0.00 0.00 4.70
2540 7295 4.439253 ACTTTCCTACTTTGTTGCCTCT 57.561 40.909 0.00 0.00 0.00 3.69
2541 7296 4.137543 ACTTTCCTACTTTGTTGCCTCTG 58.862 43.478 0.00 0.00 0.00 3.35
2542 7297 2.185004 TCCTACTTTGTTGCCTCTGC 57.815 50.000 0.00 0.00 38.26 4.26
2543 7298 1.168714 CCTACTTTGTTGCCTCTGCC 58.831 55.000 0.00 0.00 36.33 4.85
2544 7299 1.271597 CCTACTTTGTTGCCTCTGCCT 60.272 52.381 0.00 0.00 36.33 4.75
2545 7300 2.079925 CTACTTTGTTGCCTCTGCCTC 58.920 52.381 0.00 0.00 36.33 4.70
2546 7301 0.475906 ACTTTGTTGCCTCTGCCTCT 59.524 50.000 0.00 0.00 36.33 3.69
2547 7302 1.163554 CTTTGTTGCCTCTGCCTCTC 58.836 55.000 0.00 0.00 36.33 3.20
2548 7303 0.473755 TTTGTTGCCTCTGCCTCTCA 59.526 50.000 0.00 0.00 36.33 3.27
2549 7304 0.473755 TTGTTGCCTCTGCCTCTCAA 59.526 50.000 0.00 0.00 36.33 3.02
2550 7305 0.473755 TGTTGCCTCTGCCTCTCAAA 59.526 50.000 0.00 0.00 36.33 2.69
2551 7306 1.133823 TGTTGCCTCTGCCTCTCAAAA 60.134 47.619 0.00 0.00 36.33 2.44
2552 7307 2.165998 GTTGCCTCTGCCTCTCAAAAT 58.834 47.619 0.00 0.00 36.33 1.82
2553 7308 2.560105 GTTGCCTCTGCCTCTCAAAATT 59.440 45.455 0.00 0.00 36.33 1.82
2554 7309 2.165167 TGCCTCTGCCTCTCAAAATTG 58.835 47.619 0.00 0.00 36.33 2.32
2555 7310 1.135170 GCCTCTGCCTCTCAAAATTGC 60.135 52.381 0.00 0.00 0.00 3.56
2556 7311 2.444421 CCTCTGCCTCTCAAAATTGCT 58.556 47.619 0.00 0.00 0.00 3.91
2557 7312 2.422832 CCTCTGCCTCTCAAAATTGCTC 59.577 50.000 0.00 0.00 0.00 4.26
2558 7313 3.345414 CTCTGCCTCTCAAAATTGCTCT 58.655 45.455 0.00 0.00 0.00 4.09
2559 7314 3.341823 TCTGCCTCTCAAAATTGCTCTC 58.658 45.455 0.00 0.00 0.00 3.20
2560 7315 2.422832 CTGCCTCTCAAAATTGCTCTCC 59.577 50.000 0.00 0.00 0.00 3.71
2561 7316 2.040813 TGCCTCTCAAAATTGCTCTCCT 59.959 45.455 0.00 0.00 0.00 3.69
2562 7317 3.087781 GCCTCTCAAAATTGCTCTCCTT 58.912 45.455 0.00 0.00 0.00 3.36
2563 7318 3.119566 GCCTCTCAAAATTGCTCTCCTTG 60.120 47.826 0.00 0.00 0.00 3.61
2564 7319 3.119566 CCTCTCAAAATTGCTCTCCTTGC 60.120 47.826 0.00 0.00 0.00 4.01
2565 7320 3.489355 TCTCAAAATTGCTCTCCTTGCA 58.511 40.909 0.00 0.00 38.80 4.08
2566 7321 3.254166 TCTCAAAATTGCTCTCCTTGCAC 59.746 43.478 0.00 0.00 40.40 4.57
2567 7322 3.225104 TCAAAATTGCTCTCCTTGCACT 58.775 40.909 0.00 0.00 40.40 4.40
2568 7323 3.005050 TCAAAATTGCTCTCCTTGCACTG 59.995 43.478 0.00 0.00 40.40 3.66
2569 7324 2.574006 AATTGCTCTCCTTGCACTGA 57.426 45.000 0.00 0.00 40.40 3.41
2570 7325 2.803030 ATTGCTCTCCTTGCACTGAT 57.197 45.000 0.00 0.00 40.40 2.90
2571 7326 2.574006 TTGCTCTCCTTGCACTGATT 57.426 45.000 0.00 0.00 40.40 2.57
2572 7327 1.817357 TGCTCTCCTTGCACTGATTG 58.183 50.000 0.00 0.00 35.31 2.67
2573 7328 1.072806 TGCTCTCCTTGCACTGATTGT 59.927 47.619 0.00 0.00 35.31 2.71
2574 7329 1.736681 GCTCTCCTTGCACTGATTGTC 59.263 52.381 0.00 0.00 0.00 3.18
2575 7330 1.998315 CTCTCCTTGCACTGATTGTCG 59.002 52.381 0.00 0.00 0.00 4.35
2576 7331 1.081892 CTCCTTGCACTGATTGTCGG 58.918 55.000 0.00 0.00 0.00 4.79
2577 7332 0.321564 TCCTTGCACTGATTGTCGGG 60.322 55.000 0.00 0.00 0.00 5.14
2578 7333 0.606401 CCTTGCACTGATTGTCGGGT 60.606 55.000 0.00 0.00 0.00 5.28
2579 7334 1.238439 CTTGCACTGATTGTCGGGTT 58.762 50.000 0.00 0.00 0.00 4.11
2580 7335 2.422597 CTTGCACTGATTGTCGGGTTA 58.577 47.619 0.00 0.00 0.00 2.85
2581 7336 2.552599 TGCACTGATTGTCGGGTTAA 57.447 45.000 0.00 0.00 0.00 2.01
2582 7337 3.066291 TGCACTGATTGTCGGGTTAAT 57.934 42.857 0.00 0.00 0.00 1.40
2583 7338 3.417101 TGCACTGATTGTCGGGTTAATT 58.583 40.909 0.00 0.00 0.00 1.40
2584 7339 3.823873 TGCACTGATTGTCGGGTTAATTT 59.176 39.130 0.00 0.00 0.00 1.82
2585 7340 4.165779 GCACTGATTGTCGGGTTAATTTG 58.834 43.478 0.00 0.00 0.00 2.32
2586 7341 4.732784 CACTGATTGTCGGGTTAATTTGG 58.267 43.478 0.00 0.00 0.00 3.28
2587 7342 4.217550 CACTGATTGTCGGGTTAATTTGGT 59.782 41.667 0.00 0.00 0.00 3.67
2588 7343 4.830600 ACTGATTGTCGGGTTAATTTGGTT 59.169 37.500 0.00 0.00 0.00 3.67
2589 7344 5.048294 ACTGATTGTCGGGTTAATTTGGTTC 60.048 40.000 0.00 0.00 0.00 3.62
2590 7345 4.827835 TGATTGTCGGGTTAATTTGGTTCA 59.172 37.500 0.00 0.00 0.00 3.18
2591 7346 5.478679 TGATTGTCGGGTTAATTTGGTTCAT 59.521 36.000 0.00 0.00 0.00 2.57
2592 7347 4.775058 TGTCGGGTTAATTTGGTTCATG 57.225 40.909 0.00 0.00 0.00 3.07
2593 7348 4.145807 TGTCGGGTTAATTTGGTTCATGT 58.854 39.130 0.00 0.00 0.00 3.21
2594 7349 4.216687 TGTCGGGTTAATTTGGTTCATGTC 59.783 41.667 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.430864 TCTCATACAAATCTCCTCTGACTCT 58.569 40.000 0.00 0.00 0.00 3.24
2 3 7.068702 AGATCTCATACAAATCTCCTCTGACT 58.931 38.462 0.00 0.00 0.00 3.41
3 4 7.014134 TGAGATCTCATACAAATCTCCTCTGAC 59.986 40.741 21.67 0.00 43.05 3.51
4 5 7.014134 GTGAGATCTCATACAAATCTCCTCTGA 59.986 40.741 27.51 0.00 43.05 3.27
5 6 7.147312 GTGAGATCTCATACAAATCTCCTCTG 58.853 42.308 27.51 0.00 43.05 3.35
6 7 6.838090 TGTGAGATCTCATACAAATCTCCTCT 59.162 38.462 27.51 0.00 43.05 3.69
7 8 7.048629 TGTGAGATCTCATACAAATCTCCTC 57.951 40.000 27.51 10.85 43.05 3.71
8 9 7.615039 ATGTGAGATCTCATACAAATCTCCT 57.385 36.000 27.51 4.77 43.05 3.69
9 10 9.421806 CTAATGTGAGATCTCATACAAATCTCC 57.578 37.037 27.51 11.52 43.05 3.71
14 15 9.978044 CTCATCTAATGTGAGATCTCATACAAA 57.022 33.333 27.51 12.97 44.57 2.83
15 16 9.359653 TCTCATCTAATGTGAGATCTCATACAA 57.640 33.333 27.51 15.23 45.19 2.41
16 17 8.930846 TCTCATCTAATGTGAGATCTCATACA 57.069 34.615 27.51 21.23 45.19 2.29
26 27 9.361315 GATCTCATTGATCTCATCTAATGTGAG 57.639 37.037 10.05 0.00 46.05 3.51
61 62 8.674263 TTGGAAATGTTTGAGTATGCATTTTT 57.326 26.923 3.54 0.00 40.34 1.94
62 63 8.674263 TTTGGAAATGTTTGAGTATGCATTTT 57.326 26.923 3.54 0.00 40.34 1.82
63 64 8.674263 TTTTGGAAATGTTTGAGTATGCATTT 57.326 26.923 3.54 0.00 42.15 2.32
64 65 8.674263 TTTTTGGAAATGTTTGAGTATGCATT 57.326 26.923 3.54 0.00 33.55 3.56
109 110 8.514330 ACTGGAACTTTGTAAGATTGTACAAA 57.486 30.769 13.23 9.47 46.58 2.83
110 111 8.514330 AACTGGAACTTTGTAAGATTGTACAA 57.486 30.769 11.41 11.41 41.18 2.41
111 112 7.227910 GGAACTGGAACTTTGTAAGATTGTACA 59.772 37.037 0.00 0.00 32.11 2.90
112 113 7.444487 AGGAACTGGAACTTTGTAAGATTGTAC 59.556 37.037 0.00 0.00 37.18 2.90
113 114 7.514721 AGGAACTGGAACTTTGTAAGATTGTA 58.485 34.615 0.00 0.00 37.18 2.41
114 115 6.365520 AGGAACTGGAACTTTGTAAGATTGT 58.634 36.000 0.00 0.00 37.18 2.71
115 116 6.884280 AGGAACTGGAACTTTGTAAGATTG 57.116 37.500 0.00 0.00 37.18 2.67
116 117 9.588096 AATTAGGAACTGGAACTTTGTAAGATT 57.412 29.630 0.00 0.00 41.52 2.40
117 118 9.232473 GAATTAGGAACTGGAACTTTGTAAGAT 57.768 33.333 0.00 0.00 41.52 2.40
118 119 7.386848 CGAATTAGGAACTGGAACTTTGTAAGA 59.613 37.037 0.00 0.00 41.52 2.10
119 120 7.386848 TCGAATTAGGAACTGGAACTTTGTAAG 59.613 37.037 0.00 0.00 41.52 2.34
120 121 7.172019 GTCGAATTAGGAACTGGAACTTTGTAA 59.828 37.037 0.00 0.00 41.52 2.41
121 122 6.647895 GTCGAATTAGGAACTGGAACTTTGTA 59.352 38.462 0.00 0.00 41.52 2.41
122 123 5.469084 GTCGAATTAGGAACTGGAACTTTGT 59.531 40.000 0.00 0.00 41.52 2.83
123 124 5.701290 AGTCGAATTAGGAACTGGAACTTTG 59.299 40.000 0.00 0.00 41.52 2.77
124 125 5.866207 AGTCGAATTAGGAACTGGAACTTT 58.134 37.500 0.00 0.00 41.52 2.66
125 126 5.485209 AGTCGAATTAGGAACTGGAACTT 57.515 39.130 0.00 0.00 41.52 2.66
126 127 5.485209 AAGTCGAATTAGGAACTGGAACT 57.515 39.130 0.00 0.00 41.52 3.01
127 128 7.662604 TTTAAGTCGAATTAGGAACTGGAAC 57.337 36.000 5.39 0.00 41.52 3.62
128 129 8.098286 TCATTTAAGTCGAATTAGGAACTGGAA 58.902 33.333 5.39 0.00 41.52 3.53
129 130 7.617225 TCATTTAAGTCGAATTAGGAACTGGA 58.383 34.615 5.39 0.00 41.52 3.86
130 131 7.843490 TCATTTAAGTCGAATTAGGAACTGG 57.157 36.000 5.39 0.00 41.52 4.00
131 132 9.708222 CATTCATTTAAGTCGAATTAGGAACTG 57.292 33.333 14.35 5.17 41.52 3.16
132 133 9.667107 TCATTCATTTAAGTCGAATTAGGAACT 57.333 29.630 14.35 6.09 46.37 3.01
133 134 9.704098 GTCATTCATTTAAGTCGAATTAGGAAC 57.296 33.333 14.35 4.66 0.00 3.62
134 135 9.443323 TGTCATTCATTTAAGTCGAATTAGGAA 57.557 29.630 14.39 14.39 0.00 3.36
135 136 9.443323 TTGTCATTCATTTAAGTCGAATTAGGA 57.557 29.630 5.39 3.05 0.00 2.94
163 164 9.903682 CTTTGACACTATTCACATCAGATTTTT 57.096 29.630 0.00 0.00 0.00 1.94
164 165 9.071276 ACTTTGACACTATTCACATCAGATTTT 57.929 29.630 0.00 0.00 0.00 1.82
165 166 8.627208 ACTTTGACACTATTCACATCAGATTT 57.373 30.769 0.00 0.00 0.00 2.17
166 167 9.155975 GTACTTTGACACTATTCACATCAGATT 57.844 33.333 0.00 0.00 0.00 2.40
167 168 8.535335 AGTACTTTGACACTATTCACATCAGAT 58.465 33.333 0.00 0.00 0.00 2.90
168 169 7.896811 AGTACTTTGACACTATTCACATCAGA 58.103 34.615 0.00 0.00 0.00 3.27
169 170 9.809096 ATAGTACTTTGACACTATTCACATCAG 57.191 33.333 0.00 0.00 34.98 2.90
179 180 9.653287 CTTTGGATGAATAGTACTTTGACACTA 57.347 33.333 0.00 0.00 0.00 2.74
180 181 7.119846 GCTTTGGATGAATAGTACTTTGACACT 59.880 37.037 0.00 0.00 0.00 3.55
181 182 7.119846 AGCTTTGGATGAATAGTACTTTGACAC 59.880 37.037 0.00 0.00 0.00 3.67
182 183 7.168219 AGCTTTGGATGAATAGTACTTTGACA 58.832 34.615 0.00 0.00 0.00 3.58
183 184 7.617041 AGCTTTGGATGAATAGTACTTTGAC 57.383 36.000 0.00 0.00 0.00 3.18
184 185 7.769044 GGTAGCTTTGGATGAATAGTACTTTGA 59.231 37.037 0.00 0.00 0.00 2.69
185 186 7.012421 GGGTAGCTTTGGATGAATAGTACTTTG 59.988 40.741 0.00 0.00 0.00 2.77
186 187 7.054751 GGGTAGCTTTGGATGAATAGTACTTT 58.945 38.462 0.00 0.00 0.00 2.66
187 188 6.409349 GGGGTAGCTTTGGATGAATAGTACTT 60.409 42.308 0.00 0.00 0.00 2.24
188 189 5.071923 GGGGTAGCTTTGGATGAATAGTACT 59.928 44.000 0.00 0.00 0.00 2.73
189 190 5.071923 AGGGGTAGCTTTGGATGAATAGTAC 59.928 44.000 0.00 0.00 0.00 2.73
190 191 5.224441 AGGGGTAGCTTTGGATGAATAGTA 58.776 41.667 0.00 0.00 0.00 1.82
191 192 4.047883 AGGGGTAGCTTTGGATGAATAGT 58.952 43.478 0.00 0.00 0.00 2.12
192 193 4.713792 AGGGGTAGCTTTGGATGAATAG 57.286 45.455 0.00 0.00 0.00 1.73
193 194 6.331572 TGAATAGGGGTAGCTTTGGATGAATA 59.668 38.462 0.00 0.00 0.00 1.75
194 195 5.134339 TGAATAGGGGTAGCTTTGGATGAAT 59.866 40.000 0.00 0.00 0.00 2.57
195 196 4.476846 TGAATAGGGGTAGCTTTGGATGAA 59.523 41.667 0.00 0.00 0.00 2.57
196 197 4.044308 TGAATAGGGGTAGCTTTGGATGA 58.956 43.478 0.00 0.00 0.00 2.92
197 198 4.137543 GTGAATAGGGGTAGCTTTGGATG 58.862 47.826 0.00 0.00 0.00 3.51
198 199 3.785887 TGTGAATAGGGGTAGCTTTGGAT 59.214 43.478 0.00 0.00 0.00 3.41
199 200 3.186283 TGTGAATAGGGGTAGCTTTGGA 58.814 45.455 0.00 0.00 0.00 3.53
200 201 3.644966 TGTGAATAGGGGTAGCTTTGG 57.355 47.619 0.00 0.00 0.00 3.28
201 202 4.580580 GGAATGTGAATAGGGGTAGCTTTG 59.419 45.833 0.00 0.00 0.00 2.77
202 203 4.229582 TGGAATGTGAATAGGGGTAGCTTT 59.770 41.667 0.00 0.00 0.00 3.51
203 204 3.785887 TGGAATGTGAATAGGGGTAGCTT 59.214 43.478 0.00 0.00 0.00 3.74
204 205 3.393687 TGGAATGTGAATAGGGGTAGCT 58.606 45.455 0.00 0.00 0.00 3.32
205 206 3.857157 TGGAATGTGAATAGGGGTAGC 57.143 47.619 0.00 0.00 0.00 3.58
206 207 6.605119 AGATTTGGAATGTGAATAGGGGTAG 58.395 40.000 0.00 0.00 0.00 3.18
207 208 6.590656 AGATTTGGAATGTGAATAGGGGTA 57.409 37.500 0.00 0.00 0.00 3.69
208 209 5.472301 AGATTTGGAATGTGAATAGGGGT 57.528 39.130 0.00 0.00 0.00 4.95
209 210 6.131961 AGAAGATTTGGAATGTGAATAGGGG 58.868 40.000 0.00 0.00 0.00 4.79
210 211 7.651027 AAGAAGATTTGGAATGTGAATAGGG 57.349 36.000 0.00 0.00 0.00 3.53
211 212 8.964772 AGAAAGAAGATTTGGAATGTGAATAGG 58.035 33.333 0.00 0.00 0.00 2.57
214 215 8.863086 TGAAGAAAGAAGATTTGGAATGTGAAT 58.137 29.630 0.00 0.00 0.00 2.57
215 216 8.236585 TGAAGAAAGAAGATTTGGAATGTGAA 57.763 30.769 0.00 0.00 0.00 3.18
216 217 7.822161 TGAAGAAAGAAGATTTGGAATGTGA 57.178 32.000 0.00 0.00 0.00 3.58
217 218 9.136952 GATTGAAGAAAGAAGATTTGGAATGTG 57.863 33.333 0.00 0.00 0.00 3.21
218 219 9.086758 AGATTGAAGAAAGAAGATTTGGAATGT 57.913 29.630 0.00 0.00 0.00 2.71
219 220 9.570488 GAGATTGAAGAAAGAAGATTTGGAATG 57.430 33.333 0.00 0.00 0.00 2.67
220 221 9.531158 AGAGATTGAAGAAAGAAGATTTGGAAT 57.469 29.630 0.00 0.00 0.00 3.01
221 222 8.930846 AGAGATTGAAGAAAGAAGATTTGGAA 57.069 30.769 0.00 0.00 0.00 3.53
241 242 8.887717 GCTCAAAACTGATGTACATTTAGAGAT 58.112 33.333 21.14 9.13 31.60 2.75
242 243 8.097038 AGCTCAAAACTGATGTACATTTAGAGA 58.903 33.333 21.14 13.86 31.60 3.10
243 244 8.173775 CAGCTCAAAACTGATGTACATTTAGAG 58.826 37.037 21.14 16.41 37.32 2.43
244 245 7.877612 TCAGCTCAAAACTGATGTACATTTAGA 59.122 33.333 21.14 9.47 39.21 2.10
245 246 8.032952 TCAGCTCAAAACTGATGTACATTTAG 57.967 34.615 10.30 13.58 39.21 1.85
246 247 7.977789 TCAGCTCAAAACTGATGTACATTTA 57.022 32.000 10.30 1.78 39.21 1.40
247 248 6.882610 TCAGCTCAAAACTGATGTACATTT 57.117 33.333 10.30 0.00 39.21 2.32
277 278 9.734984 TCATATAGGATATGTCTACAACTTCGA 57.265 33.333 6.40 0.00 0.00 3.71
344 345 9.255304 GCGAGATCAACTCTAAGAATTCTTATT 57.745 33.333 24.56 15.23 42.92 1.40
345 346 8.417106 TGCGAGATCAACTCTAAGAATTCTTAT 58.583 33.333 24.56 11.78 42.92 1.73
346 347 7.772166 TGCGAGATCAACTCTAAGAATTCTTA 58.228 34.615 23.26 23.26 42.92 2.10
347 348 6.634805 TGCGAGATCAACTCTAAGAATTCTT 58.365 36.000 23.53 23.53 42.92 2.52
348 349 6.214191 TGCGAGATCAACTCTAAGAATTCT 57.786 37.500 0.88 0.88 42.92 2.40
349 350 6.893958 TTGCGAGATCAACTCTAAGAATTC 57.106 37.500 0.00 0.00 42.92 2.17
350 351 7.271511 AGATTGCGAGATCAACTCTAAGAATT 58.728 34.615 0.00 0.00 42.92 2.17
351 352 6.815089 AGATTGCGAGATCAACTCTAAGAAT 58.185 36.000 0.00 0.00 42.92 2.40
352 353 6.127619 TGAGATTGCGAGATCAACTCTAAGAA 60.128 38.462 0.00 0.00 42.92 2.52
353 354 5.358160 TGAGATTGCGAGATCAACTCTAAGA 59.642 40.000 0.00 0.00 42.92 2.10
354 355 5.458452 GTGAGATTGCGAGATCAACTCTAAG 59.542 44.000 0.00 0.00 42.92 2.18
355 356 5.126222 AGTGAGATTGCGAGATCAACTCTAA 59.874 40.000 0.00 0.00 42.92 2.10
356 357 4.642437 AGTGAGATTGCGAGATCAACTCTA 59.358 41.667 0.00 0.00 42.92 2.43
357 358 3.446873 AGTGAGATTGCGAGATCAACTCT 59.553 43.478 0.00 0.00 42.92 3.24
358 359 3.779759 AGTGAGATTGCGAGATCAACTC 58.220 45.455 0.00 0.00 41.79 3.01
359 360 3.883830 AGTGAGATTGCGAGATCAACT 57.116 42.857 0.00 0.00 0.00 3.16
360 361 6.408858 TTTAAGTGAGATTGCGAGATCAAC 57.591 37.500 0.00 0.00 0.00 3.18
361 362 6.595326 ACATTTAAGTGAGATTGCGAGATCAA 59.405 34.615 4.81 0.00 0.00 2.57
362 363 6.108687 ACATTTAAGTGAGATTGCGAGATCA 58.891 36.000 4.81 0.00 0.00 2.92
363 364 6.595772 ACATTTAAGTGAGATTGCGAGATC 57.404 37.500 4.81 0.00 0.00 2.75
364 365 7.981789 TCTTACATTTAAGTGAGATTGCGAGAT 59.018 33.333 4.81 0.00 36.75 2.75
365 366 7.320399 TCTTACATTTAAGTGAGATTGCGAGA 58.680 34.615 4.81 0.00 36.75 4.04
366 367 7.525688 TCTTACATTTAAGTGAGATTGCGAG 57.474 36.000 4.81 0.00 36.75 5.03
367 368 7.981789 AGATCTTACATTTAAGTGAGATTGCGA 59.018 33.333 4.81 0.00 42.68 5.10
368 369 8.136057 AGATCTTACATTTAAGTGAGATTGCG 57.864 34.615 4.81 0.00 42.68 4.85
369 370 9.102757 TGAGATCTTACATTTAAGTGAGATTGC 57.897 33.333 4.81 1.82 42.68 3.56
381 382 8.207545 GGGAGACTTGTATGAGATCTTACATTT 58.792 37.037 7.86 0.00 36.69 2.32
382 383 7.202047 GGGGAGACTTGTATGAGATCTTACATT 60.202 40.741 7.86 0.14 36.69 2.71
383 384 6.268847 GGGGAGACTTGTATGAGATCTTACAT 59.731 42.308 7.86 5.34 36.69 2.29
384 385 5.598830 GGGGAGACTTGTATGAGATCTTACA 59.401 44.000 0.00 0.00 35.53 2.41
385 386 5.278561 CGGGGAGACTTGTATGAGATCTTAC 60.279 48.000 0.00 0.00 0.00 2.34
386 387 4.827835 CGGGGAGACTTGTATGAGATCTTA 59.172 45.833 0.00 0.00 0.00 2.10
387 388 3.639094 CGGGGAGACTTGTATGAGATCTT 59.361 47.826 0.00 0.00 0.00 2.40
388 389 3.226777 CGGGGAGACTTGTATGAGATCT 58.773 50.000 0.00 0.00 0.00 2.75
389 390 2.297597 CCGGGGAGACTTGTATGAGATC 59.702 54.545 0.00 0.00 0.00 2.75
390 391 2.320781 CCGGGGAGACTTGTATGAGAT 58.679 52.381 0.00 0.00 0.00 2.75
391 392 1.776662 CCGGGGAGACTTGTATGAGA 58.223 55.000 0.00 0.00 0.00 3.27
392 393 0.105039 GCCGGGGAGACTTGTATGAG 59.895 60.000 2.18 0.00 0.00 2.90
393 394 0.616395 TGCCGGGGAGACTTGTATGA 60.616 55.000 2.18 0.00 0.00 2.15
394 395 0.179073 CTGCCGGGGAGACTTGTATG 60.179 60.000 10.44 0.00 0.00 2.39
395 396 0.617820 ACTGCCGGGGAGACTTGTAT 60.618 55.000 23.31 0.00 0.00 2.29
396 397 1.229082 ACTGCCGGGGAGACTTGTA 60.229 57.895 23.31 0.00 0.00 2.41
397 398 2.526873 ACTGCCGGGGAGACTTGT 60.527 61.111 23.31 0.00 0.00 3.16
398 399 2.046892 CACTGCCGGGGAGACTTG 60.047 66.667 23.31 6.40 0.00 3.16
399 400 3.322466 CCACTGCCGGGGAGACTT 61.322 66.667 23.31 0.00 0.00 3.01
400 401 3.846405 TTCCACTGCCGGGGAGACT 62.846 63.158 23.31 0.00 34.02 3.24
401 402 2.406002 TTTTCCACTGCCGGGGAGAC 62.406 60.000 23.31 0.00 34.02 3.36
402 403 1.710996 TTTTTCCACTGCCGGGGAGA 61.711 55.000 23.31 0.00 34.02 3.71
403 404 1.228429 TTTTTCCACTGCCGGGGAG 60.228 57.895 14.64 14.64 34.02 4.30
404 405 1.228429 CTTTTTCCACTGCCGGGGA 60.228 57.895 2.18 0.00 0.00 4.81
405 406 1.228429 TCTTTTTCCACTGCCGGGG 60.228 57.895 2.18 0.00 0.00 5.73
406 407 1.524008 GGTCTTTTTCCACTGCCGGG 61.524 60.000 2.18 0.00 0.00 5.73
407 408 0.537371 AGGTCTTTTTCCACTGCCGG 60.537 55.000 0.00 0.00 0.00 6.13
408 409 0.593128 CAGGTCTTTTTCCACTGCCG 59.407 55.000 0.00 0.00 0.00 5.69
409 410 0.315251 GCAGGTCTTTTTCCACTGCC 59.685 55.000 0.00 0.00 46.47 4.85
410 411 3.873805 GCAGGTCTTTTTCCACTGC 57.126 52.632 0.00 0.00 46.24 4.40
411 412 1.882623 GGAGCAGGTCTTTTTCCACTG 59.117 52.381 0.00 0.00 0.00 3.66
412 413 1.543429 CGGAGCAGGTCTTTTTCCACT 60.543 52.381 0.00 0.00 0.00 4.00
413 414 0.875059 CGGAGCAGGTCTTTTTCCAC 59.125 55.000 0.00 0.00 0.00 4.02
414 415 0.472471 ACGGAGCAGGTCTTTTTCCA 59.528 50.000 0.00 0.00 0.00 3.53
426 427 5.344743 AGAGATTAGAAATTGACGGAGCA 57.655 39.130 0.00 0.00 0.00 4.26
529 530 1.002087 CTAAAGGAGGCCTCAACGTGT 59.998 52.381 33.29 14.33 30.89 4.49
538 539 3.434940 TCCTTCAAACTAAAGGAGGCC 57.565 47.619 0.00 0.00 45.74 5.19
553 554 7.172361 CCTCTAGAATTCCGATGAAATTCCTTC 59.828 40.741 0.65 0.00 33.32 3.46
554 555 6.995091 CCTCTAGAATTCCGATGAAATTCCTT 59.005 38.462 0.65 0.00 33.32 3.36
555 556 6.327626 TCCTCTAGAATTCCGATGAAATTCCT 59.672 38.462 0.65 0.00 33.32 3.36
556 557 6.525629 TCCTCTAGAATTCCGATGAAATTCC 58.474 40.000 0.65 0.00 33.32 3.01
557 558 9.364989 CTATCCTCTAGAATTCCGATGAAATTC 57.635 37.037 0.65 1.31 33.32 2.17
558 559 8.317679 CCTATCCTCTAGAATTCCGATGAAATT 58.682 37.037 0.65 0.00 33.32 1.82
559 560 7.676043 TCCTATCCTCTAGAATTCCGATGAAAT 59.324 37.037 0.65 0.00 33.32 2.17
560 561 7.010771 TCCTATCCTCTAGAATTCCGATGAAA 58.989 38.462 0.65 0.00 33.32 2.69
561 562 6.552932 TCCTATCCTCTAGAATTCCGATGAA 58.447 40.000 0.65 0.00 34.33 2.57
562 563 6.140968 TCCTATCCTCTAGAATTCCGATGA 57.859 41.667 0.65 2.68 0.00 2.92
563 564 7.416964 AATCCTATCCTCTAGAATTCCGATG 57.583 40.000 0.65 0.00 0.00 3.84
564 565 8.442660 AAAATCCTATCCTCTAGAATTCCGAT 57.557 34.615 0.65 0.00 0.00 4.18
565 566 7.857404 AAAATCCTATCCTCTAGAATTCCGA 57.143 36.000 0.65 0.00 0.00 4.55
598 599 6.553100 TGAATCAAAGGGCTCTAAAGGAAAAA 59.447 34.615 0.00 0.00 0.00 1.94
599 600 6.074648 TGAATCAAAGGGCTCTAAAGGAAAA 58.925 36.000 0.00 0.00 0.00 2.29
600 601 5.640147 TGAATCAAAGGGCTCTAAAGGAAA 58.360 37.500 0.00 0.00 0.00 3.13
601 602 5.255397 TGAATCAAAGGGCTCTAAAGGAA 57.745 39.130 0.00 0.00 0.00 3.36
602 603 4.927267 TGAATCAAAGGGCTCTAAAGGA 57.073 40.909 0.00 0.00 0.00 3.36
603 604 5.767168 CCTATGAATCAAAGGGCTCTAAAGG 59.233 44.000 0.00 0.00 0.00 3.11
604 605 6.595682 TCCTATGAATCAAAGGGCTCTAAAG 58.404 40.000 0.00 0.00 0.00 1.85
605 606 6.575244 TCCTATGAATCAAAGGGCTCTAAA 57.425 37.500 0.00 0.00 0.00 1.85
606 607 6.575244 TTCCTATGAATCAAAGGGCTCTAA 57.425 37.500 0.00 0.00 0.00 2.10
607 608 6.466326 CCATTCCTATGAATCAAAGGGCTCTA 60.466 42.308 0.00 0.00 39.20 2.43
608 609 5.383476 CATTCCTATGAATCAAAGGGCTCT 58.617 41.667 0.00 0.00 39.20 4.09
609 610 4.522022 CCATTCCTATGAATCAAAGGGCTC 59.478 45.833 0.00 0.00 39.20 4.70
610 611 4.168675 TCCATTCCTATGAATCAAAGGGCT 59.831 41.667 0.00 0.00 39.20 5.19
611 612 4.473444 TCCATTCCTATGAATCAAAGGGC 58.527 43.478 0.00 0.00 39.20 5.19
612 613 7.508296 AGAAATCCATTCCTATGAATCAAAGGG 59.492 37.037 0.00 0.00 39.20 3.95
613 614 8.474710 AGAAATCCATTCCTATGAATCAAAGG 57.525 34.615 0.00 0.00 39.20 3.11
617 618 9.745018 GGAATAGAAATCCATTCCTATGAATCA 57.255 33.333 11.80 0.00 44.56 2.57
651 652 7.410120 AAAATGTGGAGGATAGGAACAAATC 57.590 36.000 0.00 0.00 0.00 2.17
653 654 9.627123 CTATAAAATGTGGAGGATAGGAACAAA 57.373 33.333 0.00 0.00 0.00 2.83
654 655 8.217799 CCTATAAAATGTGGAGGATAGGAACAA 58.782 37.037 0.00 0.00 38.72 2.83
655 656 7.570982 TCCTATAAAATGTGGAGGATAGGAACA 59.429 37.037 6.07 0.00 41.11 3.18
656 657 7.974504 TCCTATAAAATGTGGAGGATAGGAAC 58.025 38.462 6.07 0.00 41.11 3.62
657 658 8.575736 TTCCTATAAAATGTGGAGGATAGGAA 57.424 34.615 14.34 14.34 46.44 3.36
658 659 8.575736 TTTCCTATAAAATGTGGAGGATAGGA 57.424 34.615 4.66 4.66 41.91 2.94
659 660 9.813826 ATTTTCCTATAAAATGTGGAGGATAGG 57.186 33.333 0.00 0.00 36.22 2.57
677 678 9.614792 GAGTCTAGGCTCATTTTTATTTTCCTA 57.385 33.333 19.57 0.00 35.67 2.94
678 679 8.109634 TGAGTCTAGGCTCATTTTTATTTTCCT 58.890 33.333 23.07 0.00 40.23 3.36
679 680 8.281212 TGAGTCTAGGCTCATTTTTATTTTCC 57.719 34.615 23.07 0.00 40.23 3.13
682 683 8.689972 CCATTGAGTCTAGGCTCATTTTTATTT 58.310 33.333 26.91 3.37 43.99 1.40
683 684 8.055181 TCCATTGAGTCTAGGCTCATTTTTATT 58.945 33.333 26.91 4.66 43.99 1.40
684 685 7.577303 TCCATTGAGTCTAGGCTCATTTTTAT 58.423 34.615 26.91 14.49 43.99 1.40
685 686 6.957631 TCCATTGAGTCTAGGCTCATTTTTA 58.042 36.000 26.91 12.75 43.99 1.52
686 687 5.819991 TCCATTGAGTCTAGGCTCATTTTT 58.180 37.500 26.91 10.30 43.99 1.94
687 688 5.441718 TCCATTGAGTCTAGGCTCATTTT 57.558 39.130 26.91 12.69 43.99 1.82
688 689 5.441718 TTCCATTGAGTCTAGGCTCATTT 57.558 39.130 26.91 15.12 43.99 2.32
689 690 5.441718 TTTCCATTGAGTCTAGGCTCATT 57.558 39.130 26.91 20.33 43.99 2.57
690 691 5.441718 TTTTCCATTGAGTCTAGGCTCAT 57.558 39.130 26.91 14.39 43.99 2.90
691 692 4.908601 TTTTCCATTGAGTCTAGGCTCA 57.091 40.909 23.07 23.07 43.03 4.26
692 693 6.765915 AATTTTTCCATTGAGTCTAGGCTC 57.234 37.500 17.74 17.74 36.12 4.70
693 694 6.950619 AGAAATTTTTCCATTGAGTCTAGGCT 59.049 34.615 0.00 0.00 37.92 4.58
694 695 7.163001 AGAAATTTTTCCATTGAGTCTAGGC 57.837 36.000 0.00 0.00 37.92 3.93
695 696 9.415544 CAAAGAAATTTTTCCATTGAGTCTAGG 57.584 33.333 11.06 0.00 36.99 3.02
696 697 9.415544 CCAAAGAAATTTTTCCATTGAGTCTAG 57.584 33.333 15.36 0.00 36.99 2.43
697 698 8.923270 ACCAAAGAAATTTTTCCATTGAGTCTA 58.077 29.630 15.36 0.00 36.99 2.59
698 699 7.712205 CACCAAAGAAATTTTTCCATTGAGTCT 59.288 33.333 15.36 0.00 36.99 3.24
699 700 7.495606 ACACCAAAGAAATTTTTCCATTGAGTC 59.504 33.333 15.36 0.00 36.99 3.36
700 701 7.337938 ACACCAAAGAAATTTTTCCATTGAGT 58.662 30.769 15.36 11.96 36.99 3.41
701 702 7.495279 TGACACCAAAGAAATTTTTCCATTGAG 59.505 33.333 15.36 11.56 36.99 3.02
702 703 7.334090 TGACACCAAAGAAATTTTTCCATTGA 58.666 30.769 15.36 0.40 36.99 2.57
703 704 7.551035 TGACACCAAAGAAATTTTTCCATTG 57.449 32.000 0.00 10.14 37.92 2.82
704 705 8.750515 ATTGACACCAAAGAAATTTTTCCATT 57.249 26.923 0.00 0.00 34.51 3.16
705 706 7.992033 TGATTGACACCAAAGAAATTTTTCCAT 59.008 29.630 0.00 0.00 34.51 3.41
706 707 7.334090 TGATTGACACCAAAGAAATTTTTCCA 58.666 30.769 0.00 0.00 34.51 3.53
707 708 7.784633 TGATTGACACCAAAGAAATTTTTCC 57.215 32.000 0.00 0.00 34.51 3.13
710 711 9.393512 TCATTTGATTGACACCAAAGAAATTTT 57.606 25.926 0.00 0.00 35.97 1.82
711 712 8.829612 GTCATTTGATTGACACCAAAGAAATTT 58.170 29.630 0.00 0.00 44.38 1.82
712 713 8.369218 GTCATTTGATTGACACCAAAGAAATT 57.631 30.769 7.85 0.00 44.38 1.82
713 714 7.951530 GTCATTTGATTGACACCAAAGAAAT 57.048 32.000 7.85 0.00 44.38 2.17
724 725 6.024049 GGAAACGAGATGTCATTTGATTGAC 58.976 40.000 0.00 0.00 45.05 3.18
725 726 5.939883 AGGAAACGAGATGTCATTTGATTGA 59.060 36.000 0.00 0.00 0.00 2.57
726 727 6.187125 AGGAAACGAGATGTCATTTGATTG 57.813 37.500 0.00 0.00 0.00 2.67
727 728 8.511604 AATAGGAAACGAGATGTCATTTGATT 57.488 30.769 0.00 0.00 0.00 2.57
728 729 7.227512 GGAATAGGAAACGAGATGTCATTTGAT 59.772 37.037 0.00 0.00 0.00 2.57
729 730 6.538742 GGAATAGGAAACGAGATGTCATTTGA 59.461 38.462 0.00 0.00 0.00 2.69
730 731 6.540189 AGGAATAGGAAACGAGATGTCATTTG 59.460 38.462 0.00 0.00 0.00 2.32
731 732 6.653989 AGGAATAGGAAACGAGATGTCATTT 58.346 36.000 0.00 0.00 0.00 2.32
732 733 6.240549 AGGAATAGGAAACGAGATGTCATT 57.759 37.500 0.00 0.00 0.00 2.57
733 734 5.878406 AGGAATAGGAAACGAGATGTCAT 57.122 39.130 0.00 0.00 0.00 3.06
734 735 5.422331 AGAAGGAATAGGAAACGAGATGTCA 59.578 40.000 0.00 0.00 0.00 3.58
735 736 5.908341 AGAAGGAATAGGAAACGAGATGTC 58.092 41.667 0.00 0.00 0.00 3.06
736 737 5.422331 TGAGAAGGAATAGGAAACGAGATGT 59.578 40.000 0.00 0.00 0.00 3.06
737 738 5.907207 TGAGAAGGAATAGGAAACGAGATG 58.093 41.667 0.00 0.00 0.00 2.90
738 739 6.739331 ATGAGAAGGAATAGGAAACGAGAT 57.261 37.500 0.00 0.00 0.00 2.75
739 740 6.265649 CCTATGAGAAGGAATAGGAAACGAGA 59.734 42.308 3.09 0.00 45.72 4.04
740 741 6.451393 CCTATGAGAAGGAATAGGAAACGAG 58.549 44.000 3.09 0.00 45.72 4.18
741 742 6.406692 CCTATGAGAAGGAATAGGAAACGA 57.593 41.667 3.09 0.00 45.72 3.85
757 758 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
758 759 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
759 760 9.722184 AAGATGACATGTATCTCAAATCCTATG 57.278 33.333 14.33 0.00 33.92 2.23
767 768 9.551734 CAGGAAATAAGATGACATGTATCTCAA 57.448 33.333 14.33 9.03 33.92 3.02
768 769 8.708378 ACAGGAAATAAGATGACATGTATCTCA 58.292 33.333 14.33 3.49 33.92 3.27
814 815 8.157476 GCCTCTTTTGTTCATAGGATAGGATTA 58.843 37.037 0.00 0.00 28.27 1.75
815 816 7.001073 GCCTCTTTTGTTCATAGGATAGGATT 58.999 38.462 0.00 0.00 28.27 3.01
816 817 6.466470 GGCCTCTTTTGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
817 818 5.163195 GGCCTCTTTTGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
818 819 5.066593 GGCCTCTTTTGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
819 820 5.762218 CAGGCCTCTTTTGTTCATAGGATAG 59.238 44.000 0.00 0.00 0.00 2.08
820 821 5.428457 TCAGGCCTCTTTTGTTCATAGGATA 59.572 40.000 0.00 0.00 0.00 2.59
821 822 4.228210 TCAGGCCTCTTTTGTTCATAGGAT 59.772 41.667 0.00 0.00 0.00 3.24
822 823 3.587061 TCAGGCCTCTTTTGTTCATAGGA 59.413 43.478 0.00 0.00 0.00 2.94
823 824 3.955471 TCAGGCCTCTTTTGTTCATAGG 58.045 45.455 0.00 0.00 0.00 2.57
824 825 5.474876 AGTTTCAGGCCTCTTTTGTTCATAG 59.525 40.000 0.00 0.00 0.00 2.23
825 826 5.385198 AGTTTCAGGCCTCTTTTGTTCATA 58.615 37.500 0.00 0.00 0.00 2.15
826 827 4.218312 AGTTTCAGGCCTCTTTTGTTCAT 58.782 39.130 0.00 0.00 0.00 2.57
827 828 3.631250 AGTTTCAGGCCTCTTTTGTTCA 58.369 40.909 0.00 0.00 0.00 3.18
828 829 5.707764 AGATAGTTTCAGGCCTCTTTTGTTC 59.292 40.000 0.00 0.00 0.00 3.18
829 830 5.635120 AGATAGTTTCAGGCCTCTTTTGTT 58.365 37.500 0.00 0.00 0.00 2.83
830 831 5.248380 AGATAGTTTCAGGCCTCTTTTGT 57.752 39.130 0.00 0.00 0.00 2.83
831 832 5.620879 GCAAGATAGTTTCAGGCCTCTTTTG 60.621 44.000 0.00 4.58 0.00 2.44
832 833 4.460731 GCAAGATAGTTTCAGGCCTCTTTT 59.539 41.667 0.00 0.00 0.00 2.27
833 834 4.013050 GCAAGATAGTTTCAGGCCTCTTT 58.987 43.478 0.00 0.00 0.00 2.52
834 835 3.265479 AGCAAGATAGTTTCAGGCCTCTT 59.735 43.478 0.00 0.00 0.00 2.85
835 836 2.843113 AGCAAGATAGTTTCAGGCCTCT 59.157 45.455 0.00 0.00 0.00 3.69
836 837 2.941720 CAGCAAGATAGTTTCAGGCCTC 59.058 50.000 0.00 0.00 0.00 4.70
837 838 2.307098 ACAGCAAGATAGTTTCAGGCCT 59.693 45.455 0.00 0.00 0.00 5.19
838 839 2.680339 GACAGCAAGATAGTTTCAGGCC 59.320 50.000 0.00 0.00 0.00 5.19
839 840 2.349886 CGACAGCAAGATAGTTTCAGGC 59.650 50.000 0.00 0.00 0.00 4.85
840 841 3.614616 GTCGACAGCAAGATAGTTTCAGG 59.385 47.826 11.55 0.00 0.00 3.86
841 842 3.614616 GGTCGACAGCAAGATAGTTTCAG 59.385 47.826 18.91 0.00 0.00 3.02
952 958 0.524816 TAAGAATCGCGCGTGTCCTC 60.525 55.000 30.98 18.46 0.00 3.71
1074 1137 1.738350 CCTTCTGTACGCTCTCGAAGA 59.262 52.381 0.00 0.00 39.41 2.87
1807 5110 1.133915 GGGGGTCGGCAGAAATGAATA 60.134 52.381 0.00 0.00 0.00 1.75
1836 5139 1.078497 TCCAGCTGCCAACATACGG 60.078 57.895 8.66 0.00 0.00 4.02
1838 5141 0.804989 GTGTCCAGCTGCCAACATAC 59.195 55.000 8.66 0.00 0.00 2.39
1839 5142 0.673333 CGTGTCCAGCTGCCAACATA 60.673 55.000 8.66 0.00 0.00 2.29
1890 5201 8.773033 AAGGTCTTATATTCGTTTAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
1891 5202 7.672122 AAGGTCTTATATTCGTTTAGGGAGT 57.328 36.000 0.00 0.00 0.00 3.85
1970 5420 4.921515 TCCGTCTCAAAATAAGTGTCTTCG 59.078 41.667 0.00 0.00 0.00 3.79
1971 5421 6.157211 TCTCCGTCTCAAAATAAGTGTCTTC 58.843 40.000 0.00 0.00 0.00 2.87
2007 5457 7.448469 CCCATTCCCTAAACAAATATAGACCTG 59.552 40.741 0.00 0.00 0.00 4.00
2009 5459 7.295340 ACCCATTCCCTAAACAAATATAGACC 58.705 38.462 0.00 0.00 0.00 3.85
2025 5561 4.519350 GCTTGCTAATTACTACCCATTCCC 59.481 45.833 0.00 0.00 0.00 3.97
2026 5562 5.130350 TGCTTGCTAATTACTACCCATTCC 58.870 41.667 0.00 0.00 0.00 3.01
2030 5566 3.882888 GCATGCTTGCTAATTACTACCCA 59.117 43.478 16.80 0.00 45.77 4.51
2143 5680 9.770097 TCAGCCAAATGTTTTGTATTTGAAATA 57.230 25.926 10.95 0.00 44.37 1.40
2144 5681 8.674263 TCAGCCAAATGTTTTGTATTTGAAAT 57.326 26.923 10.95 0.00 44.37 2.17
2145 5682 7.768120 ACTCAGCCAAATGTTTTGTATTTGAAA 59.232 29.630 10.95 0.00 44.37 2.69
2146 5683 7.224362 CACTCAGCCAAATGTTTTGTATTTGAA 59.776 33.333 10.95 0.00 44.37 2.69
2147 5684 6.700960 CACTCAGCCAAATGTTTTGTATTTGA 59.299 34.615 10.95 0.00 44.37 2.69
2148 5685 6.700960 TCACTCAGCCAAATGTTTTGTATTTG 59.299 34.615 0.00 0.00 42.38 2.32
2149 5686 6.815089 TCACTCAGCCAAATGTTTTGTATTT 58.185 32.000 0.00 0.00 0.00 1.40
2150 5687 6.403866 TCACTCAGCCAAATGTTTTGTATT 57.596 33.333 0.00 0.00 0.00 1.89
2151 5688 6.350445 GGATCACTCAGCCAAATGTTTTGTAT 60.350 38.462 0.00 0.00 0.00 2.29
2152 5689 5.048083 GGATCACTCAGCCAAATGTTTTGTA 60.048 40.000 0.00 0.00 0.00 2.41
2153 5690 4.262164 GGATCACTCAGCCAAATGTTTTGT 60.262 41.667 0.00 0.00 0.00 2.83
2154 5691 4.240096 GGATCACTCAGCCAAATGTTTTG 58.760 43.478 0.00 0.00 0.00 2.44
2155 5692 3.896888 TGGATCACTCAGCCAAATGTTTT 59.103 39.130 0.00 0.00 0.00 2.43
2156 5693 3.499338 TGGATCACTCAGCCAAATGTTT 58.501 40.909 0.00 0.00 0.00 2.83
2157 5694 3.087031 CTGGATCACTCAGCCAAATGTT 58.913 45.455 0.00 0.00 0.00 2.71
2158 5695 2.040813 ACTGGATCACTCAGCCAAATGT 59.959 45.455 0.00 0.00 35.78 2.71
2159 5696 2.719739 ACTGGATCACTCAGCCAAATG 58.280 47.619 0.00 0.00 35.78 2.32
2160 5697 3.446442 AACTGGATCACTCAGCCAAAT 57.554 42.857 0.00 0.00 35.78 2.32
2161 5698 2.957402 AACTGGATCACTCAGCCAAA 57.043 45.000 0.00 0.00 35.78 3.28
2162 5699 3.055819 GTCTAACTGGATCACTCAGCCAA 60.056 47.826 0.00 0.00 35.78 4.52
2163 5700 2.497675 GTCTAACTGGATCACTCAGCCA 59.502 50.000 0.00 0.00 35.78 4.75
2164 5701 2.763448 AGTCTAACTGGATCACTCAGCC 59.237 50.000 0.00 0.00 35.78 4.85
2209 5746 0.447801 GCAAAGCGTGTATCACCCTG 59.552 55.000 0.00 0.00 0.00 4.45
2246 5783 7.933033 TCACCTCTAACCGTAACAACTATTTTT 59.067 33.333 0.00 0.00 0.00 1.94
2248 5785 6.996509 TCACCTCTAACCGTAACAACTATTT 58.003 36.000 0.00 0.00 0.00 1.40
2249 5786 6.594788 TCACCTCTAACCGTAACAACTATT 57.405 37.500 0.00 0.00 0.00 1.73
2250 5787 5.393896 GCTCACCTCTAACCGTAACAACTAT 60.394 44.000 0.00 0.00 0.00 2.12
2251 5788 4.082571 GCTCACCTCTAACCGTAACAACTA 60.083 45.833 0.00 0.00 0.00 2.24
2252 5789 3.305881 GCTCACCTCTAACCGTAACAACT 60.306 47.826 0.00 0.00 0.00 3.16
2253 5790 2.991866 GCTCACCTCTAACCGTAACAAC 59.008 50.000 0.00 0.00 0.00 3.32
2254 5791 2.629137 TGCTCACCTCTAACCGTAACAA 59.371 45.455 0.00 0.00 0.00 2.83
2255 5792 2.029649 GTGCTCACCTCTAACCGTAACA 60.030 50.000 0.00 0.00 0.00 2.41
2256 5793 2.230750 AGTGCTCACCTCTAACCGTAAC 59.769 50.000 0.00 0.00 0.00 2.50
2257 5794 2.522185 AGTGCTCACCTCTAACCGTAA 58.478 47.619 0.00 0.00 0.00 3.18
2258 5795 2.211250 AGTGCTCACCTCTAACCGTA 57.789 50.000 0.00 0.00 0.00 4.02
2259 5796 1.272769 GAAGTGCTCACCTCTAACCGT 59.727 52.381 0.00 0.00 0.00 4.83
2260 5797 1.546476 AGAAGTGCTCACCTCTAACCG 59.454 52.381 0.00 0.00 30.79 4.44
2279 5816 5.682943 TGGTTCTTTGATTTTCGGTGTAG 57.317 39.130 0.00 0.00 0.00 2.74
2301 5838 4.217754 TCGTTTTTAGCGCATTCAGTTT 57.782 36.364 11.47 0.00 0.00 2.66
2347 5885 4.083484 GGTCAACTCACAAATTCTAACCCG 60.083 45.833 0.00 0.00 0.00 5.28
2351 5889 8.786826 AATATCGGTCAACTCACAAATTCTAA 57.213 30.769 0.00 0.00 0.00 2.10
2379 5917 5.420739 ACGAATGCCATAAACCAATAAACCT 59.579 36.000 0.00 0.00 0.00 3.50
2397 5935 4.435121 GCTACGGAAACACCTAAACGAATG 60.435 45.833 0.00 0.00 36.31 2.67
2401 5939 2.680577 AGCTACGGAAACACCTAAACG 58.319 47.619 0.00 0.00 36.31 3.60
2414 5952 4.271533 TGAACACAAAACAACTAGCTACGG 59.728 41.667 0.00 0.00 0.00 4.02
2438 5976 4.119862 AGGATGAAAACCGACGATACATG 58.880 43.478 0.00 0.00 31.66 3.21
2487 6025 5.557866 AGGGAAGTCCACTTTAATGTGTAC 58.442 41.667 17.43 13.10 36.11 2.90
2490 7245 6.405278 AAAAGGGAAGTCCACTTTAATGTG 57.595 37.500 13.22 13.22 36.31 3.21
2496 7251 2.518407 AGGGAAAAGGGAAGTCCACTTT 59.482 45.455 0.00 4.19 37.79 2.66
2532 7287 1.609208 TTTTGAGAGGCAGAGGCAAC 58.391 50.000 0.00 0.00 43.71 4.17
2533 7288 2.559668 CAATTTTGAGAGGCAGAGGCAA 59.440 45.455 0.00 0.00 43.71 4.52
2534 7289 2.165167 CAATTTTGAGAGGCAGAGGCA 58.835 47.619 0.00 0.00 43.71 4.75
2535 7290 1.135170 GCAATTTTGAGAGGCAGAGGC 60.135 52.381 0.00 0.00 40.13 4.70
2536 7291 2.422832 GAGCAATTTTGAGAGGCAGAGG 59.577 50.000 0.00 0.00 0.00 3.69
2537 7292 3.345414 AGAGCAATTTTGAGAGGCAGAG 58.655 45.455 0.00 0.00 0.00 3.35
2538 7293 3.341823 GAGAGCAATTTTGAGAGGCAGA 58.658 45.455 0.00 0.00 0.00 4.26
2539 7294 2.422832 GGAGAGCAATTTTGAGAGGCAG 59.577 50.000 0.00 0.00 0.00 4.85
2540 7295 2.040813 AGGAGAGCAATTTTGAGAGGCA 59.959 45.455 0.00 0.00 0.00 4.75
2541 7296 2.720915 AGGAGAGCAATTTTGAGAGGC 58.279 47.619 0.00 0.00 0.00 4.70
2542 7297 3.119566 GCAAGGAGAGCAATTTTGAGAGG 60.120 47.826 0.00 0.00 0.00 3.69
2543 7298 3.504906 TGCAAGGAGAGCAATTTTGAGAG 59.495 43.478 0.00 0.00 39.39 3.20
2544 7299 3.254166 GTGCAAGGAGAGCAATTTTGAGA 59.746 43.478 0.00 0.00 44.64 3.27
2545 7300 3.255149 AGTGCAAGGAGAGCAATTTTGAG 59.745 43.478 0.00 0.00 44.64 3.02
2546 7301 3.005050 CAGTGCAAGGAGAGCAATTTTGA 59.995 43.478 0.00 0.00 44.64 2.69
2547 7302 3.005050 TCAGTGCAAGGAGAGCAATTTTG 59.995 43.478 0.00 0.00 44.64 2.44
2548 7303 3.225104 TCAGTGCAAGGAGAGCAATTTT 58.775 40.909 0.00 0.00 44.64 1.82
2549 7304 2.867624 TCAGTGCAAGGAGAGCAATTT 58.132 42.857 0.00 0.00 44.64 1.82
2550 7305 2.574006 TCAGTGCAAGGAGAGCAATT 57.426 45.000 0.00 0.00 44.64 2.32
2551 7306 2.753452 CAATCAGTGCAAGGAGAGCAAT 59.247 45.455 0.00 0.00 44.64 3.56
2552 7307 2.156917 CAATCAGTGCAAGGAGAGCAA 58.843 47.619 0.00 0.00 44.64 3.91
2553 7308 1.072806 ACAATCAGTGCAAGGAGAGCA 59.927 47.619 0.00 0.00 40.19 4.26
2554 7309 1.736681 GACAATCAGTGCAAGGAGAGC 59.263 52.381 0.00 0.00 0.00 4.09
2555 7310 1.998315 CGACAATCAGTGCAAGGAGAG 59.002 52.381 0.00 0.00 0.00 3.20
2556 7311 1.338105 CCGACAATCAGTGCAAGGAGA 60.338 52.381 0.00 0.00 0.00 3.71
2557 7312 1.081892 CCGACAATCAGTGCAAGGAG 58.918 55.000 0.00 0.00 0.00 3.69
2558 7313 0.321564 CCCGACAATCAGTGCAAGGA 60.322 55.000 0.00 0.00 0.00 3.36
2559 7314 0.606401 ACCCGACAATCAGTGCAAGG 60.606 55.000 0.00 0.00 0.00 3.61
2560 7315 1.238439 AACCCGACAATCAGTGCAAG 58.762 50.000 0.00 0.00 0.00 4.01
2561 7316 2.552599 TAACCCGACAATCAGTGCAA 57.447 45.000 0.00 0.00 0.00 4.08
2562 7317 2.552599 TTAACCCGACAATCAGTGCA 57.447 45.000 0.00 0.00 0.00 4.57
2563 7318 4.165779 CAAATTAACCCGACAATCAGTGC 58.834 43.478 0.00 0.00 0.00 4.40
2564 7319 4.217550 ACCAAATTAACCCGACAATCAGTG 59.782 41.667 0.00 0.00 0.00 3.66
2565 7320 4.403734 ACCAAATTAACCCGACAATCAGT 58.596 39.130 0.00 0.00 0.00 3.41
2566 7321 5.048364 TGAACCAAATTAACCCGACAATCAG 60.048 40.000 0.00 0.00 0.00 2.90
2567 7322 4.827835 TGAACCAAATTAACCCGACAATCA 59.172 37.500 0.00 0.00 0.00 2.57
2568 7323 5.379732 TGAACCAAATTAACCCGACAATC 57.620 39.130 0.00 0.00 0.00 2.67
2569 7324 5.245075 ACATGAACCAAATTAACCCGACAAT 59.755 36.000 0.00 0.00 0.00 2.71
2570 7325 4.585162 ACATGAACCAAATTAACCCGACAA 59.415 37.500 0.00 0.00 0.00 3.18
2571 7326 4.145807 ACATGAACCAAATTAACCCGACA 58.854 39.130 0.00 0.00 0.00 4.35
2572 7327 4.729595 GACATGAACCAAATTAACCCGAC 58.270 43.478 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.