Multiple sequence alignment - TraesCS7D01G203600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G203600 chr7D 100.000 3584 0 0 1 3584 161526834 161530417 0.000000e+00 6619.0
1 TraesCS7D01G203600 chr7D 83.867 1469 139 38 1965 3386 161495035 161496452 0.000000e+00 1310.0
2 TraesCS7D01G203600 chr7D 84.084 622 62 22 941 1539 161494016 161494623 1.870000e-157 566.0
3 TraesCS7D01G203600 chr7B 94.159 1986 92 13 762 2740 123806683 123808651 0.000000e+00 3003.0
4 TraesCS7D01G203600 chr7B 86.195 1485 115 32 1965 3386 123802773 123804230 0.000000e+00 1524.0
5 TraesCS7D01G203600 chr7B 86.133 649 69 10 137 777 123806029 123806664 0.000000e+00 680.0
6 TraesCS7D01G203600 chr7B 86.550 342 29 9 917 1253 123801767 123802096 9.460000e-96 361.0
7 TraesCS7D01G203600 chr7B 81.501 373 34 14 3008 3347 123808895 123809265 1.270000e-69 274.0
8 TraesCS7D01G203600 chr7B 86.538 208 17 4 2753 2954 123808694 123808896 6.020000e-53 219.0
9 TraesCS7D01G203600 chr7B 84.270 178 20 6 1294 1463 123802091 123802268 2.210000e-37 167.0
10 TraesCS7D01G203600 chr7B 88.489 139 13 2 1 137 123804686 123804823 7.960000e-37 165.0
11 TraesCS7D01G203600 chr7A 85.183 1478 138 25 1965 3388 162827520 162828970 0.000000e+00 1441.0
12 TraesCS7D01G203600 chr7A 93.139 787 53 1 1964 2749 162871700 162872486 0.000000e+00 1153.0
13 TraesCS7D01G203600 chr7A 93.543 635 28 6 905 1530 162852645 162853275 0.000000e+00 933.0
14 TraesCS7D01G203600 chr7A 93.142 452 27 4 1523 1972 162870196 162870645 0.000000e+00 660.0
15 TraesCS7D01G203600 chr7A 85.783 626 66 13 137 756 162830419 162831027 3.020000e-180 641.0
16 TraesCS7D01G203600 chr7A 85.315 572 44 17 2753 3293 162872519 162873081 4.040000e-154 555.0
17 TraesCS7D01G203600 chr7A 82.906 117 15 4 1 115 162829306 162829419 2.280000e-17 100.0
18 TraesCS7D01G203600 chrUn 88.235 187 19 2 3397 3583 154971787 154971604 1.680000e-53 220.0
19 TraesCS7D01G203600 chrUn 88.235 187 19 2 3397 3583 155054215 155054032 1.680000e-53 220.0
20 TraesCS7D01G203600 chrUn 88.235 187 19 2 3397 3583 239617068 239617251 1.680000e-53 220.0
21 TraesCS7D01G203600 chrUn 88.235 187 19 2 3397 3583 324368026 324368209 1.680000e-53 220.0
22 TraesCS7D01G203600 chrUn 100.000 30 0 0 32 61 88580241 88580212 5.000000e-04 56.5
23 TraesCS7D01G203600 chrUn 96.875 32 1 0 30 61 292906426 292906395 2.000000e-03 54.7
24 TraesCS7D01G203600 chrUn 100.000 28 0 0 34 61 96242175 96242148 6.000000e-03 52.8
25 TraesCS7D01G203600 chr3B 88.235 187 19 2 3397 3583 792322076 792322259 1.680000e-53 220.0
26 TraesCS7D01G203600 chr3B 88.235 187 19 2 3397 3583 792408891 792409074 1.680000e-53 220.0
27 TraesCS7D01G203600 chr3B 86.631 187 22 2 3397 3583 793366777 793366594 1.690000e-48 204.0
28 TraesCS7D01G203600 chr3B 87.222 180 20 2 3397 3576 793417870 793417694 6.070000e-48 202.0
29 TraesCS7D01G203600 chr3B 80.435 138 26 1 112 249 123055757 123055893 1.760000e-18 104.0
30 TraesCS7D01G203600 chr1B 86.243 189 23 3 3397 3584 305415379 305415193 6.070000e-48 202.0
31 TraesCS7D01G203600 chr1B 100.000 30 0 0 32 61 607150954 607150925 5.000000e-04 56.5
32 TraesCS7D01G203600 chr1A 79.710 138 27 1 112 249 448988197 448988333 8.190000e-17 99.0
33 TraesCS7D01G203600 chr3A 89.706 68 7 0 113 180 716799508 716799441 1.770000e-13 87.9
34 TraesCS7D01G203600 chr3D 84.932 73 8 3 112 183 299739994 299739924 1.790000e-08 71.3
35 TraesCS7D01G203600 chr6B 97.059 34 0 1 29 62 703272929 703272961 5.000000e-04 56.5
36 TraesCS7D01G203600 chr6D 96.875 32 1 0 30 61 91706538 91706507 2.000000e-03 54.7
37 TraesCS7D01G203600 chr1D 96.875 32 1 0 30 61 5816658 5816627 2.000000e-03 54.7
38 TraesCS7D01G203600 chr1D 96.875 32 1 0 31 62 92207746 92207777 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G203600 chr7D 161526834 161530417 3583 False 6619.000000 6619 100.000000 1 3584 1 chr7D.!!$F1 3583
1 TraesCS7D01G203600 chr7D 161494016 161496452 2436 False 938.000000 1310 83.975500 941 3386 2 chr7D.!!$F2 2445
2 TraesCS7D01G203600 chr7B 123801767 123809265 7498 False 799.125000 3003 86.729375 1 3386 8 chr7B.!!$F1 3385
3 TraesCS7D01G203600 chr7A 162852645 162853275 630 False 933.000000 933 93.543000 905 1530 1 chr7A.!!$F1 625
4 TraesCS7D01G203600 chr7A 162870196 162873081 2885 False 789.333333 1153 90.532000 1523 3293 3 chr7A.!!$F3 1770
5 TraesCS7D01G203600 chr7A 162827520 162831027 3507 False 727.333333 1441 84.624000 1 3388 3 chr7A.!!$F2 3387


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 4510 0.038983 TCATCGGCGACAAAGTTCGA 60.039 50.0 13.76 0.00 41.78 3.71 F
872 5039 0.178068 GGCTGAGGTCCTATGCGAAA 59.822 55.0 8.85 0.00 0.00 3.46 F
1407 5629 0.453793 AGCTCTTCGACGATGACCTG 59.546 55.0 9.19 2.41 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 6063 0.867086 TAACGGCAAACTAACGGTGC 59.133 50.0 0.00 0.0 37.55 5.01 R
2393 7699 0.108138 CAAAGAGTACCGAGGGCCAG 60.108 60.0 6.18 0.0 0.00 4.85 R
3026 8370 0.179026 CCAGGATCAGGCCATGACAG 60.179 60.0 5.01 0.0 41.91 3.51 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 2958 9.574516 CTTTTGCCCCACTTTATTATATACTCT 57.425 33.333 0.00 0.00 0.00 3.24
46 2966 9.843334 CCACTTTATTATATACTCTCTCCGTTC 57.157 37.037 0.00 0.00 0.00 3.95
56 2976 5.485209 ACTCTCTCCGTTCCAAAATAAGT 57.515 39.130 0.00 0.00 0.00 2.24
57 2977 5.238583 ACTCTCTCCGTTCCAAAATAAGTG 58.761 41.667 0.00 0.00 0.00 3.16
58 2978 5.221661 ACTCTCTCCGTTCCAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
59 2979 5.235516 TCTCTCCGTTCCAAAATAAGTGTC 58.764 41.667 0.00 0.00 0.00 3.67
60 2980 5.011738 TCTCTCCGTTCCAAAATAAGTGTCT 59.988 40.000 0.00 0.00 0.00 3.41
62 2982 5.699458 TCTCCGTTCCAAAATAAGTGTCTTC 59.301 40.000 0.00 0.00 0.00 2.87
63 2983 4.449743 TCCGTTCCAAAATAAGTGTCTTCG 59.550 41.667 0.00 0.00 0.00 3.79
103 3024 6.894339 ATCGAAAACACTTATTTTGGGACT 57.106 33.333 0.00 0.00 31.90 3.85
108 3029 6.911250 AAACACTTATTTTGGGACTAAGGG 57.089 37.500 0.00 0.00 33.14 3.95
124 3045 6.315642 GGACTAAGGGAGTATAAAGCAACAAC 59.684 42.308 0.00 0.00 39.06 3.32
143 4270 1.202830 ACCGAACAAAGTACATGCCCA 60.203 47.619 0.00 0.00 0.00 5.36
146 4273 3.305110 CGAACAAAGTACATGCCCAAAC 58.695 45.455 0.00 0.00 0.00 2.93
162 4289 3.119990 CCCAAACGATACAATGTGGTGAC 60.120 47.826 0.00 0.00 0.00 3.67
167 4294 2.534349 CGATACAATGTGGTGACGTAGC 59.466 50.000 0.00 0.00 0.00 3.58
168 4295 2.373540 TACAATGTGGTGACGTAGCC 57.626 50.000 0.00 0.00 0.00 3.93
180 4307 2.895404 TGACGTAGCCCTCTTACAAAGT 59.105 45.455 0.00 0.00 0.00 2.66
201 4328 6.015027 AGTCGTTCTTAGGATAATCGGATG 57.985 41.667 0.00 0.00 0.00 3.51
204 4331 4.852104 CGTTCTTAGGATAATCGGATGACG 59.148 45.833 0.00 0.00 46.11 4.35
207 4334 4.279922 TCTTAGGATAATCGGATGACGCAA 59.720 41.667 0.00 0.00 43.86 4.85
222 4349 1.271926 ACGCAAAAGGCAAGGGACTAT 60.272 47.619 0.00 0.00 45.17 2.12
243 4370 3.857052 TGCTACCGAAAGATAACACAGG 58.143 45.455 0.00 0.00 0.00 4.00
246 4373 4.142227 GCTACCGAAAGATAACACAGGAGA 60.142 45.833 0.00 0.00 0.00 3.71
252 4379 6.406400 CCGAAAGATAACACAGGAGAGAGAAT 60.406 42.308 0.00 0.00 0.00 2.40
255 4382 5.276440 AGATAACACAGGAGAGAGAATGGT 58.724 41.667 0.00 0.00 0.00 3.55
256 4383 3.692257 AACACAGGAGAGAGAATGGTG 57.308 47.619 0.00 0.00 0.00 4.17
285 4412 1.787847 CCGCTGTCGATTCCACAAC 59.212 57.895 0.00 0.00 38.10 3.32
287 4414 1.787847 GCTGTCGATTCCACAACGG 59.212 57.895 0.00 0.00 0.00 4.44
288 4415 0.669318 GCTGTCGATTCCACAACGGA 60.669 55.000 0.00 0.00 44.40 4.69
289 4416 1.068474 CTGTCGATTCCACAACGGAC 58.932 55.000 0.00 0.00 46.36 4.79
290 4417 0.389757 TGTCGATTCCACAACGGACA 59.610 50.000 0.00 0.00 46.36 4.02
291 4418 1.202545 TGTCGATTCCACAACGGACAA 60.203 47.619 0.00 0.00 46.36 3.18
292 4419 1.868498 GTCGATTCCACAACGGACAAA 59.132 47.619 0.00 0.00 46.36 2.83
293 4420 2.096417 GTCGATTCCACAACGGACAAAG 60.096 50.000 0.00 0.00 46.36 2.77
294 4421 2.139917 CGATTCCACAACGGACAAAGA 58.860 47.619 0.00 0.00 46.36 2.52
295 4422 2.096417 CGATTCCACAACGGACAAAGAC 60.096 50.000 0.00 0.00 46.36 3.01
296 4423 2.702592 TTCCACAACGGACAAAGACT 57.297 45.000 0.00 0.00 46.36 3.24
304 4431 3.536956 ACGGACAAAGACTTTCACTCA 57.463 42.857 0.00 0.00 0.00 3.41
318 4445 3.744238 TCACTCAGAATCCAAACACGA 57.256 42.857 0.00 0.00 0.00 4.35
335 4462 1.268899 ACGAAGAGGAGTACCACAACG 59.731 52.381 0.00 0.00 38.94 4.10
337 4464 2.163815 CGAAGAGGAGTACCACAACGAT 59.836 50.000 0.00 0.00 38.94 3.73
340 4467 2.492484 AGAGGAGTACCACAACGATGTC 59.508 50.000 0.00 0.00 37.82 3.06
349 4477 3.809832 ACCACAACGATGTCTTCAAGAAG 59.190 43.478 0.00 3.43 37.82 2.85
351 4479 4.151335 CCACAACGATGTCTTCAAGAAGAG 59.849 45.833 12.50 4.35 46.93 2.85
357 4485 4.856487 CGATGTCTTCAAGAAGAGAGTGAC 59.144 45.833 12.50 2.36 46.93 3.67
367 4495 3.380004 AGAAGAGAGTGACGTCCATCATC 59.620 47.826 14.12 8.09 0.00 2.92
368 4496 1.673400 AGAGAGTGACGTCCATCATCG 59.327 52.381 14.12 0.00 0.00 3.84
372 4500 2.411504 TGACGTCCATCATCGGCGA 61.412 57.895 13.87 13.87 37.97 5.54
378 4506 0.249120 TCCATCATCGGCGACAAAGT 59.751 50.000 13.76 0.00 0.00 2.66
380 4508 1.062587 CCATCATCGGCGACAAAGTTC 59.937 52.381 13.76 0.00 0.00 3.01
381 4509 0.999406 ATCATCGGCGACAAAGTTCG 59.001 50.000 13.76 0.00 42.15 3.95
382 4510 0.038983 TCATCGGCGACAAAGTTCGA 60.039 50.000 13.76 0.00 41.78 3.71
404 4532 0.962356 CTTTTGCCCGACAGCTCCAT 60.962 55.000 0.00 0.00 0.00 3.41
406 4534 3.664025 TTGCCCGACAGCTCCATCG 62.664 63.158 4.87 4.87 38.08 3.84
409 4537 2.887568 CCGACAGCTCCATCGTGC 60.888 66.667 9.89 0.00 36.60 5.34
426 4554 2.879233 GCCACCACGAGGACTCCAA 61.879 63.158 5.68 0.00 38.69 3.53
433 4561 0.318762 ACGAGGACTCCAAGACAAGC 59.681 55.000 0.00 0.00 0.00 4.01
445 4573 1.593209 GACAAGCGTGACGGGTTCA 60.593 57.895 7.25 0.00 0.00 3.18
452 4580 0.739813 CGTGACGGGTTCAGATTCCC 60.740 60.000 0.00 2.02 40.26 3.97
487 4615 1.592669 ACCATGACATAGCGCGCTC 60.593 57.895 40.23 24.20 0.00 5.03
488 4616 1.592400 CCATGACATAGCGCGCTCA 60.592 57.895 40.23 29.32 0.00 4.26
494 4622 2.892425 ATAGCGCGCTCAAGCCAC 60.892 61.111 40.23 0.53 37.91 5.01
507 4635 3.615709 GCCACCCACTGCCAAACC 61.616 66.667 0.00 0.00 0.00 3.27
515 4643 2.348998 CTGCCAAACCTCTCGCCT 59.651 61.111 0.00 0.00 0.00 5.52
540 4668 1.305381 ACGGCCAAGAGACCTAGCT 60.305 57.895 2.24 0.00 0.00 3.32
551 4679 1.900486 AGACCTAGCTACCACAACCAC 59.100 52.381 0.00 0.00 0.00 4.16
566 4694 4.854924 CACCATGATGCCCGCCGA 62.855 66.667 0.00 0.00 0.00 5.54
656 4790 3.202001 CATAGTGCCAACCCGCGG 61.202 66.667 21.04 21.04 0.00 6.46
666 4800 1.826487 AACCCGCGGCAAGAAAAGT 60.826 52.632 22.85 6.61 0.00 2.66
670 4804 2.561373 GCGGCAAGAAAAGTCCGG 59.439 61.111 0.00 0.00 41.96 5.14
680 4814 1.464997 GAAAAGTCCGGCATCAGTCAC 59.535 52.381 0.00 0.00 0.00 3.67
697 4831 3.071479 GTCACCGAGGCTGAATTGTAAA 58.929 45.455 0.00 0.00 0.00 2.01
699 4833 3.751175 TCACCGAGGCTGAATTGTAAAAG 59.249 43.478 0.00 0.00 0.00 2.27
702 4836 4.455877 ACCGAGGCTGAATTGTAAAAGAAG 59.544 41.667 0.00 0.00 0.00 2.85
758 4892 7.970061 ACACATTATATGATGTCTTGTGTTTGC 59.030 33.333 10.02 0.00 42.39 3.68
764 4898 0.453793 TGTCTTGTGTTTGCCCAACG 59.546 50.000 0.00 0.00 38.36 4.10
773 4939 5.001874 TGTGTTTGCCCAACGTATTATGTA 58.998 37.500 0.00 0.00 38.36 2.29
802 4968 2.465860 AGTTAGCGCACACATGGTTA 57.534 45.000 11.47 0.00 0.00 2.85
804 4970 3.343617 AGTTAGCGCACACATGGTTAAT 58.656 40.909 11.47 0.00 0.00 1.40
805 4971 4.509616 AGTTAGCGCACACATGGTTAATA 58.490 39.130 11.47 0.00 0.00 0.98
807 4973 5.588648 AGTTAGCGCACACATGGTTAATAAT 59.411 36.000 11.47 0.00 0.00 1.28
810 4976 3.315191 GCGCACACATGGTTAATAATCCT 59.685 43.478 0.30 0.00 0.00 3.24
851 5018 9.679721 GCATAGTGCAAAATGAGAGACCTCAAC 62.680 44.444 12.51 0.00 46.65 3.18
856 5023 3.464878 TGAGAGACCTCAACAGGCT 57.535 52.632 0.00 0.00 45.74 4.58
857 5024 0.972134 TGAGAGACCTCAACAGGCTG 59.028 55.000 14.16 14.16 45.74 4.85
858 5025 1.261480 GAGAGACCTCAACAGGCTGA 58.739 55.000 23.66 0.00 45.05 4.26
859 5026 1.204467 GAGAGACCTCAACAGGCTGAG 59.796 57.143 23.66 13.29 45.05 3.35
864 5031 2.370718 CTCAACAGGCTGAGGTCCT 58.629 57.895 23.66 0.00 39.39 3.85
865 5032 1.561643 CTCAACAGGCTGAGGTCCTA 58.438 55.000 23.66 0.00 39.39 2.94
866 5033 2.114616 CTCAACAGGCTGAGGTCCTAT 58.885 52.381 23.66 0.00 39.39 2.57
867 5034 1.833630 TCAACAGGCTGAGGTCCTATG 59.166 52.381 23.66 6.72 31.52 2.23
868 5035 0.543749 AACAGGCTGAGGTCCTATGC 59.456 55.000 23.66 6.97 31.52 3.14
869 5036 1.068753 CAGGCTGAGGTCCTATGCG 59.931 63.158 9.42 0.00 31.52 4.73
870 5037 1.075970 AGGCTGAGGTCCTATGCGA 60.076 57.895 8.85 0.00 30.79 5.10
871 5038 0.687757 AGGCTGAGGTCCTATGCGAA 60.688 55.000 8.85 0.00 30.79 4.70
872 5039 0.178068 GGCTGAGGTCCTATGCGAAA 59.822 55.000 8.85 0.00 0.00 3.46
873 5040 1.576356 GCTGAGGTCCTATGCGAAAG 58.424 55.000 0.00 0.00 0.00 2.62
874 5041 1.137086 GCTGAGGTCCTATGCGAAAGA 59.863 52.381 0.00 0.00 0.00 2.52
875 5042 2.418746 GCTGAGGTCCTATGCGAAAGAA 60.419 50.000 0.00 0.00 0.00 2.52
876 5043 3.861840 CTGAGGTCCTATGCGAAAGAAA 58.138 45.455 0.00 0.00 0.00 2.52
877 5044 4.253685 CTGAGGTCCTATGCGAAAGAAAA 58.746 43.478 0.00 0.00 0.00 2.29
878 5045 4.647611 TGAGGTCCTATGCGAAAGAAAAA 58.352 39.130 0.00 0.00 0.00 1.94
879 5046 4.695455 TGAGGTCCTATGCGAAAGAAAAAG 59.305 41.667 0.00 0.00 0.00 2.27
880 5047 4.906618 AGGTCCTATGCGAAAGAAAAAGA 58.093 39.130 0.00 0.00 0.00 2.52
881 5048 5.313712 AGGTCCTATGCGAAAGAAAAAGAA 58.686 37.500 0.00 0.00 0.00 2.52
882 5049 5.768164 AGGTCCTATGCGAAAGAAAAAGAAA 59.232 36.000 0.00 0.00 0.00 2.52
883 5050 6.264518 AGGTCCTATGCGAAAGAAAAAGAAAA 59.735 34.615 0.00 0.00 0.00 2.29
884 5051 6.921307 GGTCCTATGCGAAAGAAAAAGAAAAA 59.079 34.615 0.00 0.00 0.00 1.94
885 5052 7.598869 GGTCCTATGCGAAAGAAAAAGAAAAAT 59.401 33.333 0.00 0.00 0.00 1.82
886 5053 8.639428 GTCCTATGCGAAAGAAAAAGAAAAATC 58.361 33.333 0.00 0.00 0.00 2.17
887 5054 8.356657 TCCTATGCGAAAGAAAAAGAAAAATCA 58.643 29.630 0.00 0.00 0.00 2.57
888 5055 8.977505 CCTATGCGAAAGAAAAAGAAAAATCAA 58.022 29.630 0.00 0.00 0.00 2.57
891 5058 7.683746 TGCGAAAGAAAAAGAAAAATCAAAGG 58.316 30.769 0.00 0.00 0.00 3.11
892 5059 6.628856 GCGAAAGAAAAAGAAAAATCAAAGGC 59.371 34.615 0.00 0.00 0.00 4.35
893 5060 7.676104 GCGAAAGAAAAAGAAAAATCAAAGGCA 60.676 33.333 0.00 0.00 0.00 4.75
894 5061 7.635973 CGAAAGAAAAAGAAAAATCAAAGGCAC 59.364 33.333 0.00 0.00 0.00 5.01
895 5062 6.925610 AGAAAAAGAAAAATCAAAGGCACC 57.074 33.333 0.00 0.00 0.00 5.01
896 5063 5.523552 AGAAAAAGAAAAATCAAAGGCACCG 59.476 36.000 0.00 0.00 0.00 4.94
897 5064 4.664150 AAAGAAAAATCAAAGGCACCGA 57.336 36.364 0.00 0.00 0.00 4.69
898 5065 3.643159 AGAAAAATCAAAGGCACCGAC 57.357 42.857 0.00 0.00 0.00 4.79
899 5066 2.296190 AGAAAAATCAAAGGCACCGACC 59.704 45.455 0.00 0.00 0.00 4.79
900 5067 1.995376 AAAATCAAAGGCACCGACCT 58.005 45.000 0.00 0.00 43.91 3.85
901 5068 2.871096 AAATCAAAGGCACCGACCTA 57.129 45.000 0.00 0.00 39.93 3.08
1108 5324 1.639534 CACGTCACGGTGTTCAACC 59.360 57.895 0.35 0.00 46.60 3.77
1143 5362 3.462678 GAGAGGGACTGGGCGGAC 61.463 72.222 0.00 0.00 41.55 4.79
1342 5564 2.956987 GCACCAATCTTGTGCGCT 59.043 55.556 9.73 0.00 34.32 5.92
1407 5629 0.453793 AGCTCTTCGACGATGACCTG 59.546 55.000 9.19 2.41 0.00 4.00
1441 5670 2.683867 GGCGAGCAGTAAGTCTCTCTTA 59.316 50.000 0.00 0.00 37.56 2.10
1530 5767 4.956034 ATAAACTCGATCGAATTCGCAG 57.044 40.909 22.90 16.32 38.97 5.18
1540 5777 3.820689 TCGAATTCGCAGGTCAAATTTG 58.179 40.909 22.90 12.15 39.60 2.32
1692 5930 3.546617 TGCGCACGTTGTATACAAAAAG 58.453 40.909 19.63 15.48 37.63 2.27
1736 5974 5.062558 CGATTTTCAGTAATCCGTTTACCGT 59.937 40.000 2.80 0.00 41.01 4.83
1739 5977 6.704512 TTTCAGTAATCCGTTTACCGTTAC 57.295 37.500 2.80 0.00 41.01 2.50
1824 6063 2.293122 TGACTTGGCACCAAAATCTTCG 59.707 45.455 3.29 0.00 35.33 3.79
1885 6124 2.616510 CGTCAGCTTTTGATCCTCCCTT 60.617 50.000 0.00 0.00 38.29 3.95
1937 6176 9.642327 TTTTACATTGTATAGAGACTGCGTTAA 57.358 29.630 0.00 0.00 0.00 2.01
1949 6188 8.359060 AGAGACTGCGTTAATTAATTCAGATC 57.641 34.615 24.32 20.94 0.00 2.75
2038 7344 8.085909 TCATCAAGTGTTATTACGTCTCAAAGA 58.914 33.333 0.00 0.00 0.00 2.52
2195 7501 6.822073 AAAAGATCGTTTTTACAAACCTGC 57.178 33.333 0.34 0.00 39.43 4.85
2272 7578 0.946221 CGACAGCAACAGACTCACCC 60.946 60.000 0.00 0.00 0.00 4.61
2393 7699 3.326747 AGTGTTCTCGAGTTAACATGGC 58.673 45.455 19.12 9.46 37.87 4.40
2445 7751 1.518903 GCAGTTGCTGTTGGAGTCCC 61.519 60.000 6.74 0.00 38.21 4.46
2454 7760 1.272816 TGTTGGAGTCCCGACTATCCA 60.273 52.381 6.74 0.00 45.41 3.41
2599 7905 3.866651 CCCTAGTGAGATCTGGTTGTTG 58.133 50.000 0.00 0.00 0.00 3.33
2611 7917 2.495669 CTGGTTGTTGTGGTTGGAGTTT 59.504 45.455 0.00 0.00 0.00 2.66
2615 7921 1.065345 TGTTGTGGTTGGAGTTTCCGA 60.065 47.619 0.00 0.00 40.17 4.55
2624 7930 4.436332 GTTGGAGTTTCCGAATACCGTAT 58.564 43.478 0.00 0.00 40.17 3.06
2629 7935 5.450965 GGAGTTTCCGAATACCGTATTCTCA 60.451 44.000 22.92 10.76 41.80 3.27
2649 7955 1.351017 ACTGATGGAATGGTGGTTCGT 59.649 47.619 0.00 0.00 0.00 3.85
2652 7958 2.159382 GATGGAATGGTGGTTCGTTGT 58.841 47.619 0.00 0.00 0.00 3.32
2653 7959 1.313772 TGGAATGGTGGTTCGTTGTG 58.686 50.000 0.00 0.00 0.00 3.33
2664 7970 5.627780 GGTGGTTCGTTGTGTCAATTAATTC 59.372 40.000 0.00 0.00 0.00 2.17
2667 7973 5.158494 GTTCGTTGTGTCAATTAATTCCCC 58.842 41.667 0.00 0.00 0.00 4.81
2693 7999 1.816835 GGTTTTCCGATCCACCTTTCC 59.183 52.381 0.00 0.00 0.00 3.13
2698 8004 0.905357 CCGATCCACCTTTCCTCACT 59.095 55.000 0.00 0.00 0.00 3.41
2750 8056 4.887615 GGAATACCCAGCCTCTGC 57.112 61.111 0.00 0.00 37.95 4.26
2751 8057 1.915228 GGAATACCCAGCCTCTGCA 59.085 57.895 0.00 0.00 41.13 4.41
2796 8132 8.017418 TGATTGTTCCCAATAAAAGAAGTGTT 57.983 30.769 0.00 0.00 41.37 3.32
2830 8167 6.293955 GCTTCTTCATTTTGCTACAACCAGTA 60.294 38.462 0.00 0.00 0.00 2.74
2838 8175 2.674796 CTACAACCAGTAGTGCCTCC 57.325 55.000 0.00 0.00 44.24 4.30
2860 8198 3.518590 GAAGGATGCCAGCTTGAAAATG 58.481 45.455 0.00 0.00 0.00 2.32
2906 8246 6.638468 GCTGGTTCTCAAGTTAAACTTCATTG 59.362 38.462 0.00 0.00 36.03 2.82
2908 8248 6.605594 TGGTTCTCAAGTTAAACTTCATTGGT 59.394 34.615 0.00 0.00 36.03 3.67
2909 8249 7.776030 TGGTTCTCAAGTTAAACTTCATTGGTA 59.224 33.333 0.00 0.00 36.03 3.25
2910 8250 8.290325 GGTTCTCAAGTTAAACTTCATTGGTAG 58.710 37.037 0.00 0.00 36.03 3.18
2911 8251 9.052759 GTTCTCAAGTTAAACTTCATTGGTAGA 57.947 33.333 0.00 0.00 36.03 2.59
2912 8252 8.603242 TCTCAAGTTAAACTTCATTGGTAGAC 57.397 34.615 0.00 0.00 36.03 2.59
2913 8253 8.208224 TCTCAAGTTAAACTTCATTGGTAGACA 58.792 33.333 0.00 0.00 36.03 3.41
2914 8254 8.740123 TCAAGTTAAACTTCATTGGTAGACAA 57.260 30.769 0.00 0.00 38.90 3.18
2915 8255 9.179909 TCAAGTTAAACTTCATTGGTAGACAAA 57.820 29.630 0.00 0.00 38.37 2.83
2916 8256 9.796120 CAAGTTAAACTTCATTGGTAGACAAAA 57.204 29.630 0.00 0.00 38.37 2.44
2948 8288 0.458543 CAGACATCCGTCCGTCCTTG 60.459 60.000 0.00 0.00 43.73 3.61
2957 8297 0.390472 GTCCGTCCTTGCTCTTCCTG 60.390 60.000 0.00 0.00 0.00 3.86
2997 8341 3.709587 TCTTACTTCCTGTACCTCCTGG 58.290 50.000 0.00 0.00 39.83 4.45
3043 8388 1.276859 TGCTGTCATGGCCTGATCCT 61.277 55.000 3.32 0.00 35.97 3.24
3071 8419 7.201785 GGAATTTAACAAAGGCGGATCAATCTA 60.202 37.037 0.00 0.00 0.00 1.98
3105 8453 1.202855 AGTCAGATGCTTGTGCCAAGT 60.203 47.619 14.04 0.00 38.71 3.16
3107 8455 2.813754 GTCAGATGCTTGTGCCAAGTAA 59.186 45.455 14.04 6.07 38.71 2.24
3118 8466 6.614694 TTGTGCCAAGTAATCCTACTAGAA 57.385 37.500 0.00 0.00 37.39 2.10
3217 8586 8.306313 TGCAGAAATTACTACCAAGATCTCTA 57.694 34.615 0.00 0.00 0.00 2.43
3233 8604 6.164876 AGATCTCTATTCTTGATGATTGCGG 58.835 40.000 0.00 0.00 0.00 5.69
3245 8616 3.492421 TGATTGCGGCATTCTCTTTTC 57.508 42.857 21.33 3.98 0.00 2.29
3281 8658 3.056607 TGCATTTAGGAAAGAAGCAAGGC 60.057 43.478 0.00 0.00 0.00 4.35
3293 8670 7.362920 GGAAAGAAGCAAGGCAATAGTATTTGA 60.363 37.037 0.00 0.00 0.00 2.69
3295 8672 7.035840 AGAAGCAAGGCAATAGTATTTGATG 57.964 36.000 0.00 0.00 0.00 3.07
3302 8679 4.350346 GCAATAGTATTTGATGCGTGCAA 58.650 39.130 0.00 0.00 0.00 4.08
3359 8736 0.490017 TCAGTCCCACCTTGACCCTA 59.510 55.000 0.00 0.00 33.09 3.53
3373 8750 3.858135 TGACCCTACTCTTGAGGAACTT 58.142 45.455 2.55 0.00 41.55 2.66
3382 8759 4.023707 ACTCTTGAGGAACTTCATTTTGCG 60.024 41.667 2.55 0.00 41.55 4.85
3388 8765 5.049680 TGAGGAACTTCATTTTGCGACTAAC 60.050 40.000 0.00 0.00 41.55 2.34
3391 8768 2.482721 ACTTCATTTTGCGACTAACCCG 59.517 45.455 0.00 0.00 0.00 5.28
3393 8770 2.496111 TCATTTTGCGACTAACCCGTT 58.504 42.857 0.00 0.00 0.00 4.44
3394 8771 3.661944 TCATTTTGCGACTAACCCGTTA 58.338 40.909 0.00 0.00 0.00 3.18
3395 8772 4.063689 TCATTTTGCGACTAACCCGTTAA 58.936 39.130 0.00 0.00 0.00 2.01
3396 8773 3.876242 TTTTGCGACTAACCCGTTAAC 57.124 42.857 0.00 0.00 0.00 2.01
3397 8774 1.417372 TTGCGACTAACCCGTTAACG 58.583 50.000 20.99 20.99 39.44 3.18
3398 8775 0.595588 TGCGACTAACCCGTTAACGA 59.404 50.000 28.79 8.25 43.02 3.85
3399 8776 1.262882 GCGACTAACCCGTTAACGAG 58.737 55.000 28.79 18.98 43.02 4.18
3400 8777 1.135689 GCGACTAACCCGTTAACGAGA 60.136 52.381 28.79 9.80 43.02 4.04
3401 8778 2.778659 CGACTAACCCGTTAACGAGAG 58.221 52.381 28.79 19.60 43.02 3.20
3418 10462 4.863131 ACGAGAGTGGTTTTTAATAGCTCG 59.137 41.667 0.00 0.00 46.97 5.03
3433 10477 1.742768 CTCGAGCTCCATGGTACCC 59.257 63.158 12.58 0.00 0.00 3.69
3445 10489 2.345782 TGGTACCCCCATGAACAGTA 57.654 50.000 10.07 0.00 38.72 2.74
3449 10493 3.053917 GGTACCCCCATGAACAGTACAAT 60.054 47.826 0.00 0.00 35.98 2.71
3450 10494 3.366052 ACCCCCATGAACAGTACAATC 57.634 47.619 0.00 0.00 0.00 2.67
3451 10495 2.288666 CCCCCATGAACAGTACAATCG 58.711 52.381 0.00 0.00 0.00 3.34
3454 10498 4.006989 CCCCATGAACAGTACAATCGAAA 58.993 43.478 0.00 0.00 0.00 3.46
3455 10499 4.457603 CCCCATGAACAGTACAATCGAAAA 59.542 41.667 0.00 0.00 0.00 2.29
3456 10500 5.125417 CCCCATGAACAGTACAATCGAAAAT 59.875 40.000 0.00 0.00 0.00 1.82
3457 10501 6.317642 CCCCATGAACAGTACAATCGAAAATA 59.682 38.462 0.00 0.00 0.00 1.40
3458 10502 7.013274 CCCCATGAACAGTACAATCGAAAATAT 59.987 37.037 0.00 0.00 0.00 1.28
3459 10503 8.405531 CCCATGAACAGTACAATCGAAAATATT 58.594 33.333 0.00 0.00 0.00 1.28
3490 10534 9.599866 AAAAAGATCCGAAAATTCTGAAACTTT 57.400 25.926 0.00 12.41 35.30 2.66
3491 10535 8.579682 AAAGATCCGAAAATTCTGAAACTTTG 57.420 30.769 15.00 0.00 34.11 2.77
3492 10536 7.277174 AGATCCGAAAATTCTGAAACTTTGT 57.723 32.000 0.00 0.00 0.00 2.83
3493 10537 7.141363 AGATCCGAAAATTCTGAAACTTTGTG 58.859 34.615 0.00 0.00 0.00 3.33
3494 10538 5.587289 TCCGAAAATTCTGAAACTTTGTGG 58.413 37.500 0.00 2.90 0.00 4.17
3495 10539 4.744631 CCGAAAATTCTGAAACTTTGTGGG 59.255 41.667 0.00 0.00 0.00 4.61
3496 10540 5.451242 CCGAAAATTCTGAAACTTTGTGGGA 60.451 40.000 0.00 0.00 0.00 4.37
3497 10541 6.215845 CGAAAATTCTGAAACTTTGTGGGAT 58.784 36.000 0.00 0.00 0.00 3.85
3498 10542 6.701400 CGAAAATTCTGAAACTTTGTGGGATT 59.299 34.615 0.00 0.00 0.00 3.01
3499 10543 7.306749 CGAAAATTCTGAAACTTTGTGGGATTG 60.307 37.037 0.00 0.00 0.00 2.67
3500 10544 6.729690 AATTCTGAAACTTTGTGGGATTGA 57.270 33.333 0.00 0.00 0.00 2.57
3501 10545 6.923199 ATTCTGAAACTTTGTGGGATTGAT 57.077 33.333 0.00 0.00 0.00 2.57
3502 10546 6.729690 TTCTGAAACTTTGTGGGATTGATT 57.270 33.333 0.00 0.00 0.00 2.57
3503 10547 7.831691 TTCTGAAACTTTGTGGGATTGATTA 57.168 32.000 0.00 0.00 0.00 1.75
3504 10548 8.421249 TTCTGAAACTTTGTGGGATTGATTAT 57.579 30.769 0.00 0.00 0.00 1.28
3505 10549 7.829725 TCTGAAACTTTGTGGGATTGATTATG 58.170 34.615 0.00 0.00 0.00 1.90
3506 10550 7.669304 TCTGAAACTTTGTGGGATTGATTATGA 59.331 33.333 0.00 0.00 0.00 2.15
3508 10552 6.530019 AACTTTGTGGGATTGATTATGACC 57.470 37.500 0.00 0.00 0.00 4.02
3509 10553 5.579047 ACTTTGTGGGATTGATTATGACCA 58.421 37.500 0.00 0.00 0.00 4.02
3510 10554 6.015918 ACTTTGTGGGATTGATTATGACCAA 58.984 36.000 0.00 0.00 0.00 3.67
3512 10556 7.180766 ACTTTGTGGGATTGATTATGACCAAAT 59.819 33.333 0.00 0.00 0.00 2.32
3513 10557 7.493499 TTGTGGGATTGATTATGACCAAATT 57.507 32.000 0.00 0.00 0.00 1.82
3514 10558 7.493499 TGTGGGATTGATTATGACCAAATTT 57.507 32.000 0.00 0.00 0.00 1.82
3515 10559 7.915930 TGTGGGATTGATTATGACCAAATTTT 58.084 30.769 0.00 0.00 0.00 1.82
3516 10560 7.823310 TGTGGGATTGATTATGACCAAATTTTG 59.177 33.333 1.99 1.99 0.00 2.44
3517 10561 7.823799 GTGGGATTGATTATGACCAAATTTTGT 59.176 33.333 8.26 0.00 0.00 2.83
3518 10562 9.040259 TGGGATTGATTATGACCAAATTTTGTA 57.960 29.630 8.26 0.00 0.00 2.41
3519 10563 9.533253 GGGATTGATTATGACCAAATTTTGTAG 57.467 33.333 8.26 0.00 0.00 2.74
3520 10564 9.533253 GGATTGATTATGACCAAATTTTGTAGG 57.467 33.333 8.26 0.00 0.00 3.18
3523 10567 7.319646 TGATTATGACCAAATTTTGTAGGTGC 58.680 34.615 8.26 0.00 33.77 5.01
3524 10568 6.909550 TTATGACCAAATTTTGTAGGTGCT 57.090 33.333 8.26 0.00 33.77 4.40
3525 10569 5.806654 ATGACCAAATTTTGTAGGTGCTT 57.193 34.783 8.26 0.00 33.77 3.91
3526 10570 4.942852 TGACCAAATTTTGTAGGTGCTTG 58.057 39.130 8.26 0.00 33.77 4.01
3527 10571 3.727726 ACCAAATTTTGTAGGTGCTTGC 58.272 40.909 8.26 0.00 32.04 4.01
3528 10572 3.133721 ACCAAATTTTGTAGGTGCTTGCA 59.866 39.130 8.26 0.00 32.04 4.08
3529 10573 4.125703 CCAAATTTTGTAGGTGCTTGCAA 58.874 39.130 8.26 0.00 0.00 4.08
3530 10574 4.574013 CCAAATTTTGTAGGTGCTTGCAAA 59.426 37.500 0.00 0.00 0.00 3.68
3532 10576 6.238703 CCAAATTTTGTAGGTGCTTGCAAATT 60.239 34.615 0.00 0.00 31.99 1.82
3533 10577 6.940831 AATTTTGTAGGTGCTTGCAAATTT 57.059 29.167 0.00 0.00 31.99 1.82
3534 10578 6.940831 ATTTTGTAGGTGCTTGCAAATTTT 57.059 29.167 0.00 0.00 31.99 1.82
3535 10579 6.749923 TTTTGTAGGTGCTTGCAAATTTTT 57.250 29.167 0.00 0.00 31.99 1.94
3536 10580 5.731599 TTGTAGGTGCTTGCAAATTTTTG 57.268 34.783 0.00 0.00 41.03 2.44
3537 10581 4.764172 TGTAGGTGCTTGCAAATTTTTGT 58.236 34.783 0.00 0.00 40.24 2.83
3538 10582 4.569966 TGTAGGTGCTTGCAAATTTTTGTG 59.430 37.500 0.00 0.00 40.24 3.33
3539 10583 3.608796 AGGTGCTTGCAAATTTTTGTGT 58.391 36.364 0.00 0.00 40.24 3.72
3541 10585 3.242706 GGTGCTTGCAAATTTTTGTGTCC 60.243 43.478 0.00 0.00 40.24 4.02
3542 10586 3.373439 GTGCTTGCAAATTTTTGTGTCCA 59.627 39.130 0.00 0.00 40.24 4.02
3544 10588 4.456911 TGCTTGCAAATTTTTGTGTCCAAA 59.543 33.333 0.00 0.00 40.24 3.28
3545 10589 5.125097 TGCTTGCAAATTTTTGTGTCCAAAT 59.875 32.000 0.00 0.00 40.14 2.32
3547 10591 7.148188 TGCTTGCAAATTTTTGTGTCCAAATAA 60.148 29.630 0.00 0.00 40.14 1.40
3550 10594 8.218338 TGCAAATTTTTGTGTCCAAATAACAT 57.782 26.923 5.05 0.00 40.14 2.71
3551 10595 8.680903 TGCAAATTTTTGTGTCCAAATAACATT 58.319 25.926 5.05 0.00 40.14 2.71
3552 10596 9.513727 GCAAATTTTTGTGTCCAAATAACATTT 57.486 25.926 5.05 0.00 40.14 2.32
3558 10602 9.757227 TTTTGTGTCCAAATAACATTTTAGGAG 57.243 29.630 0.00 0.00 40.14 3.69
3559 10603 6.919721 TGTGTCCAAATAACATTTTAGGAGC 58.080 36.000 0.00 0.00 0.00 4.70
3560 10604 6.719370 TGTGTCCAAATAACATTTTAGGAGCT 59.281 34.615 0.00 0.00 0.00 4.09
3563 10607 7.615365 TGTCCAAATAACATTTTAGGAGCTCAT 59.385 33.333 17.19 11.85 0.00 2.90
3564 10608 9.120538 GTCCAAATAACATTTTAGGAGCTCATA 57.879 33.333 17.19 10.57 0.00 2.15
3565 10609 9.120538 TCCAAATAACATTTTAGGAGCTCATAC 57.879 33.333 17.19 0.00 0.00 2.39
3566 10610 8.902806 CCAAATAACATTTTAGGAGCTCATACA 58.097 33.333 17.19 2.54 0.00 2.29
3567 10611 9.941664 CAAATAACATTTTAGGAGCTCATACAG 57.058 33.333 17.19 5.17 0.00 2.74
3569 10613 9.905713 AATAACATTTTAGGAGCTCATACAGAA 57.094 29.630 17.19 8.13 0.00 3.02
3570 10614 9.905713 ATAACATTTTAGGAGCTCATACAGAAA 57.094 29.630 17.19 10.81 0.00 2.52
3572 10616 8.814038 ACATTTTAGGAGCTCATACAGAAAAT 57.186 30.769 17.19 13.90 0.00 1.82
3573 10617 9.905713 ACATTTTAGGAGCTCATACAGAAAATA 57.094 29.630 17.19 0.00 0.00 1.40
3576 10620 9.733556 TTTTAGGAGCTCATACAGAAAATAACA 57.266 29.630 17.19 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.958822 GGGCAAAAGCCTTTCGAGAA 59.041 50.000 6.45 0.00 0.00 2.87
2 3 0.893727 GGGGCAAAAGCCTTTCGAGA 60.894 55.000 6.45 0.00 0.00 4.04
4 5 1.152652 TGGGGCAAAAGCCTTTCGA 60.153 52.632 6.45 0.00 0.00 3.71
5 6 1.006220 GTGGGGCAAAAGCCTTTCG 60.006 57.895 6.45 0.00 0.00 3.46
6 7 0.758734 AAGTGGGGCAAAAGCCTTTC 59.241 50.000 6.45 0.00 0.00 2.62
19 2939 8.350852 ACGGAGAGAGTATATAATAAAGTGGG 57.649 38.462 0.00 0.00 0.00 4.61
38 2958 5.223449 AGACACTTATTTTGGAACGGAGA 57.777 39.130 0.00 0.00 0.00 3.71
46 2966 7.584987 ACTTTGATCGAAGACACTTATTTTGG 58.415 34.615 26.43 0.00 42.51 3.28
53 2973 6.281405 AGTACAACTTTGATCGAAGACACTT 58.719 36.000 26.43 9.60 42.51 3.16
54 2974 5.844004 AGTACAACTTTGATCGAAGACACT 58.156 37.500 26.43 18.49 42.51 3.55
55 2975 7.633361 TTAGTACAACTTTGATCGAAGACAC 57.367 36.000 26.43 16.95 42.51 3.67
56 2976 8.827177 ATTTAGTACAACTTTGATCGAAGACA 57.173 30.769 26.43 7.69 42.51 3.41
57 2977 8.102716 CGATTTAGTACAACTTTGATCGAAGAC 58.897 37.037 26.43 14.97 42.51 3.01
58 2978 8.024865 TCGATTTAGTACAACTTTGATCGAAGA 58.975 33.333 26.43 3.89 38.19 2.87
59 2979 8.169839 TCGATTTAGTACAACTTTGATCGAAG 57.830 34.615 19.46 19.46 38.19 3.79
60 2980 8.523523 TTCGATTTAGTACAACTTTGATCGAA 57.476 30.769 19.36 19.36 42.51 3.71
62 2982 9.037417 GTTTTCGATTTAGTACAACTTTGATCG 57.963 33.333 0.00 10.51 35.92 3.69
63 2983 9.872757 TGTTTTCGATTTAGTACAACTTTGATC 57.127 29.630 0.00 0.00 0.00 2.92
103 3024 5.046448 TCGGTTGTTGCTTTATACTCCCTTA 60.046 40.000 0.00 0.00 0.00 2.69
108 3029 5.600908 TGTTCGGTTGTTGCTTTATACTC 57.399 39.130 0.00 0.00 0.00 2.59
124 3045 1.529226 TGGGCATGTACTTTGTTCGG 58.471 50.000 0.00 0.00 0.00 4.30
143 4270 3.395639 ACGTCACCACATTGTATCGTTT 58.604 40.909 0.00 0.00 0.00 3.60
146 4273 2.534349 GCTACGTCACCACATTGTATCG 59.466 50.000 0.00 0.00 0.00 2.92
162 4289 2.094854 ACGACTTTGTAAGAGGGCTACG 60.095 50.000 0.00 0.00 0.00 3.51
167 4294 5.047519 TCCTAAGAACGACTTTGTAAGAGGG 60.048 44.000 0.00 0.00 39.72 4.30
168 4295 6.022163 TCCTAAGAACGACTTTGTAAGAGG 57.978 41.667 0.00 0.00 39.72 3.69
180 4307 5.334646 CGTCATCCGATTATCCTAAGAACGA 60.335 44.000 0.00 0.00 39.56 3.85
201 4328 1.172812 AGTCCCTTGCCTTTTGCGTC 61.173 55.000 0.00 0.00 45.60 5.19
204 4331 1.134995 GCATAGTCCCTTGCCTTTTGC 60.135 52.381 0.00 0.00 41.77 3.68
207 4334 2.092375 GGTAGCATAGTCCCTTGCCTTT 60.092 50.000 0.00 0.00 39.72 3.11
222 4349 3.512329 TCCTGTGTTATCTTTCGGTAGCA 59.488 43.478 0.00 0.00 0.00 3.49
243 4370 2.275318 CGCTTTCCACCATTCTCTCTC 58.725 52.381 0.00 0.00 0.00 3.20
246 4373 1.673033 CGACGCTTTCCACCATTCTCT 60.673 52.381 0.00 0.00 0.00 3.10
285 4412 3.717707 TCTGAGTGAAAGTCTTTGTCCG 58.282 45.455 1.60 0.00 37.14 4.79
287 4414 5.760253 TGGATTCTGAGTGAAAGTCTTTGTC 59.240 40.000 1.60 0.00 38.29 3.18
288 4415 5.684704 TGGATTCTGAGTGAAAGTCTTTGT 58.315 37.500 1.60 0.00 38.29 2.83
289 4416 6.624352 TTGGATTCTGAGTGAAAGTCTTTG 57.376 37.500 1.60 0.00 38.29 2.77
290 4417 6.603201 TGTTTGGATTCTGAGTGAAAGTCTTT 59.397 34.615 0.00 0.00 38.29 2.52
291 4418 6.038714 GTGTTTGGATTCTGAGTGAAAGTCTT 59.961 38.462 0.00 0.00 38.29 3.01
292 4419 5.529060 GTGTTTGGATTCTGAGTGAAAGTCT 59.471 40.000 0.00 0.00 38.29 3.24
293 4420 5.559035 CGTGTTTGGATTCTGAGTGAAAGTC 60.559 44.000 0.00 0.00 38.29 3.01
294 4421 4.273480 CGTGTTTGGATTCTGAGTGAAAGT 59.727 41.667 0.00 0.00 38.29 2.66
295 4422 4.511454 TCGTGTTTGGATTCTGAGTGAAAG 59.489 41.667 0.00 0.00 38.29 2.62
296 4423 4.447290 TCGTGTTTGGATTCTGAGTGAAA 58.553 39.130 0.00 0.00 38.29 2.69
304 4431 3.325135 ACTCCTCTTCGTGTTTGGATTCT 59.675 43.478 0.00 0.00 0.00 2.40
318 4445 2.897969 ACATCGTTGTGGTACTCCTCTT 59.102 45.455 0.00 0.00 33.85 2.85
335 4462 4.856487 CGTCACTCTCTTCTTGAAGACATC 59.144 45.833 8.80 0.00 0.00 3.06
337 4464 3.632604 ACGTCACTCTCTTCTTGAAGACA 59.367 43.478 8.80 0.00 0.00 3.41
340 4467 3.004839 TGGACGTCACTCTCTTCTTGAAG 59.995 47.826 18.91 4.13 0.00 3.02
349 4477 1.268794 CCGATGATGGACGTCACTCTC 60.269 57.143 18.91 8.27 34.46 3.20
351 4479 0.872021 GCCGATGATGGACGTCACTC 60.872 60.000 18.91 13.27 34.46 3.51
357 4485 1.081556 TTTGTCGCCGATGATGGACG 61.082 55.000 0.00 0.00 32.17 4.79
367 4495 1.154654 GCTTCGAACTTTGTCGCCG 60.155 57.895 0.00 0.00 40.88 6.46
368 4496 0.586802 AAGCTTCGAACTTTGTCGCC 59.413 50.000 0.00 0.00 40.88 5.54
372 4500 2.481276 GGGCAAAAGCTTCGAACTTTGT 60.481 45.455 19.44 11.19 37.42 2.83
378 4506 0.816018 TGTCGGGCAAAAGCTTCGAA 60.816 50.000 8.56 0.00 0.00 3.71
380 4508 1.207593 CTGTCGGGCAAAAGCTTCG 59.792 57.895 0.00 0.00 0.00 3.79
381 4509 1.081175 GCTGTCGGGCAAAAGCTTC 60.081 57.895 0.00 0.00 32.82 3.86
382 4510 1.518903 GAGCTGTCGGGCAAAAGCTT 61.519 55.000 5.40 0.00 45.74 3.74
394 4522 2.103042 GTGGCACGATGGAGCTGTC 61.103 63.158 0.00 0.00 0.00 3.51
398 4526 3.127533 GTGGTGGCACGATGGAGC 61.128 66.667 12.17 0.00 0.00 4.70
406 4534 2.048127 GAGTCCTCGTGGTGGCAC 60.048 66.667 9.70 9.70 34.23 5.01
409 4537 1.185618 TCTTGGAGTCCTCGTGGTGG 61.186 60.000 11.33 0.00 34.23 4.61
426 4554 1.300697 GAACCCGTCACGCTTGTCT 60.301 57.895 0.00 0.00 0.00 3.41
433 4561 0.739813 GGGAATCTGAACCCGTCACG 60.740 60.000 7.37 0.00 36.56 4.35
445 4573 2.255406 CTGATCCGGATCTGGGAATCT 58.745 52.381 37.39 6.27 38.60 2.40
452 4580 0.531532 GGTGCACTGATCCGGATCTG 60.532 60.000 36.30 36.30 40.99 2.90
494 4622 1.672356 CGAGAGGTTTGGCAGTGGG 60.672 63.158 0.00 0.00 0.00 4.61
499 4627 2.032528 CAGGCGAGAGGTTTGGCA 59.967 61.111 0.00 0.00 38.21 4.92
540 4668 1.615651 GGCATCATGGTGGTTGTGGTA 60.616 52.381 8.33 0.00 0.00 3.25
551 4679 3.282157 CTTCGGCGGGCATCATGG 61.282 66.667 7.21 0.00 0.00 3.66
566 4694 4.699522 GGCGGTCCGTTGGCTCTT 62.700 66.667 13.94 0.00 0.00 2.85
572 4700 2.742372 CTGGAAGGCGGTCCGTTG 60.742 66.667 13.94 0.00 40.96 4.10
600 4733 1.141665 CTCGTGGCATGGATGTCGA 59.858 57.895 6.90 0.13 34.48 4.20
603 4736 0.543277 ATGTCTCGTGGCATGGATGT 59.457 50.000 3.37 0.00 0.00 3.06
605 4738 0.249615 CGATGTCTCGTGGCATGGAT 60.250 55.000 9.64 0.00 40.07 3.41
628 4761 3.272334 CACTATGAAGCGGGCGGC 61.272 66.667 9.26 9.26 44.05 6.53
656 4790 0.881118 TGATGCCGGACTTTTCTTGC 59.119 50.000 5.05 0.00 0.00 4.01
659 4793 1.347707 TGACTGATGCCGGACTTTTCT 59.652 47.619 5.05 0.00 0.00 2.52
666 4800 2.678580 TCGGTGACTGATGCCGGA 60.679 61.111 5.05 0.00 44.97 5.14
670 4804 1.812922 CAGCCTCGGTGACTGATGC 60.813 63.158 12.91 12.91 33.10 3.91
680 4814 4.695455 TCTTCTTTTACAATTCAGCCTCGG 59.305 41.667 0.00 0.00 0.00 4.63
699 4833 9.900710 AACATCGTGTACTTGATCTATATCTTC 57.099 33.333 0.00 0.00 32.93 2.87
709 4843 9.228636 GTGTTTTAAAAACATCGTGTACTTGAT 57.771 29.630 1.31 0.00 32.23 2.57
756 4890 6.768381 TCATTCAATACATAATACGTTGGGCA 59.232 34.615 0.00 0.00 0.00 5.36
773 4939 4.875536 TGTGTGCGCTAACTATCATTCAAT 59.124 37.500 9.73 0.00 0.00 2.57
851 5018 1.068753 CGCATAGGACCTCAGCCTG 59.931 63.158 0.00 0.00 36.96 4.85
852 5019 0.687757 TTCGCATAGGACCTCAGCCT 60.688 55.000 0.00 0.00 39.56 4.58
853 5020 0.178068 TTTCGCATAGGACCTCAGCC 59.822 55.000 0.00 0.00 0.00 4.85
854 5021 1.137086 TCTTTCGCATAGGACCTCAGC 59.863 52.381 0.00 2.18 0.00 4.26
855 5022 3.526931 TTCTTTCGCATAGGACCTCAG 57.473 47.619 0.00 0.00 0.00 3.35
856 5023 3.973206 TTTCTTTCGCATAGGACCTCA 57.027 42.857 0.00 0.00 0.00 3.86
857 5024 4.935808 TCTTTTTCTTTCGCATAGGACCTC 59.064 41.667 0.00 0.00 0.00 3.85
858 5025 4.906618 TCTTTTTCTTTCGCATAGGACCT 58.093 39.130 0.00 0.00 0.00 3.85
859 5026 5.622770 TTCTTTTTCTTTCGCATAGGACC 57.377 39.130 0.00 0.00 0.00 4.46
860 5027 7.924103 TTTTTCTTTTTCTTTCGCATAGGAC 57.076 32.000 0.00 0.00 0.00 3.85
861 5028 8.356657 TGATTTTTCTTTTTCTTTCGCATAGGA 58.643 29.630 0.00 0.00 0.00 2.94
862 5029 8.519492 TGATTTTTCTTTTTCTTTCGCATAGG 57.481 30.769 0.00 0.00 0.00 2.57
865 5032 8.337532 CCTTTGATTTTTCTTTTTCTTTCGCAT 58.662 29.630 0.00 0.00 0.00 4.73
866 5033 7.676104 GCCTTTGATTTTTCTTTTTCTTTCGCA 60.676 33.333 0.00 0.00 0.00 5.10
867 5034 6.628856 GCCTTTGATTTTTCTTTTTCTTTCGC 59.371 34.615 0.00 0.00 0.00 4.70
868 5035 7.635973 GTGCCTTTGATTTTTCTTTTTCTTTCG 59.364 33.333 0.00 0.00 0.00 3.46
869 5036 7.910162 GGTGCCTTTGATTTTTCTTTTTCTTTC 59.090 33.333 0.00 0.00 0.00 2.62
870 5037 7.413988 CGGTGCCTTTGATTTTTCTTTTTCTTT 60.414 33.333 0.00 0.00 0.00 2.52
871 5038 6.037062 CGGTGCCTTTGATTTTTCTTTTTCTT 59.963 34.615 0.00 0.00 0.00 2.52
872 5039 5.523552 CGGTGCCTTTGATTTTTCTTTTTCT 59.476 36.000 0.00 0.00 0.00 2.52
873 5040 5.522097 TCGGTGCCTTTGATTTTTCTTTTTC 59.478 36.000 0.00 0.00 0.00 2.29
874 5041 5.293324 GTCGGTGCCTTTGATTTTTCTTTTT 59.707 36.000 0.00 0.00 0.00 1.94
875 5042 4.808895 GTCGGTGCCTTTGATTTTTCTTTT 59.191 37.500 0.00 0.00 0.00 2.27
876 5043 4.368315 GTCGGTGCCTTTGATTTTTCTTT 58.632 39.130 0.00 0.00 0.00 2.52
877 5044 3.243737 GGTCGGTGCCTTTGATTTTTCTT 60.244 43.478 0.00 0.00 0.00 2.52
878 5045 2.296190 GGTCGGTGCCTTTGATTTTTCT 59.704 45.455 0.00 0.00 0.00 2.52
879 5046 2.296190 AGGTCGGTGCCTTTGATTTTTC 59.704 45.455 0.00 0.00 34.71 2.29
880 5047 2.316108 AGGTCGGTGCCTTTGATTTTT 58.684 42.857 0.00 0.00 34.71 1.94
881 5048 1.995376 AGGTCGGTGCCTTTGATTTT 58.005 45.000 0.00 0.00 34.71 1.82
882 5049 2.433436 GTAGGTCGGTGCCTTTGATTT 58.567 47.619 0.00 0.00 39.94 2.17
883 5050 1.339727 GGTAGGTCGGTGCCTTTGATT 60.340 52.381 0.00 0.00 39.94 2.57
884 5051 0.252197 GGTAGGTCGGTGCCTTTGAT 59.748 55.000 0.00 0.00 39.94 2.57
885 5052 0.834687 AGGTAGGTCGGTGCCTTTGA 60.835 55.000 0.00 0.00 39.94 2.69
886 5053 0.899720 TAGGTAGGTCGGTGCCTTTG 59.100 55.000 0.00 0.00 39.94 2.77
887 5054 1.485066 CATAGGTAGGTCGGTGCCTTT 59.515 52.381 0.00 0.00 39.94 3.11
888 5055 1.120530 CATAGGTAGGTCGGTGCCTT 58.879 55.000 0.00 0.00 39.94 4.35
889 5056 1.400530 GCATAGGTAGGTCGGTGCCT 61.401 60.000 0.00 0.00 42.43 4.75
890 5057 1.069258 GCATAGGTAGGTCGGTGCC 59.931 63.158 0.00 0.00 0.00 5.01
891 5058 1.299926 CGCATAGGTAGGTCGGTGC 60.300 63.158 0.00 0.00 0.00 5.01
892 5059 0.742505 TTCGCATAGGTAGGTCGGTG 59.257 55.000 0.00 0.00 0.00 4.94
893 5060 1.407979 CTTTCGCATAGGTAGGTCGGT 59.592 52.381 0.00 0.00 0.00 4.69
894 5061 1.679680 TCTTTCGCATAGGTAGGTCGG 59.320 52.381 0.00 0.00 0.00 4.79
895 5062 3.431922 TTCTTTCGCATAGGTAGGTCG 57.568 47.619 0.00 0.00 0.00 4.79
896 5063 5.873164 TCTTTTTCTTTCGCATAGGTAGGTC 59.127 40.000 0.00 0.00 0.00 3.85
897 5064 5.801380 TCTTTTTCTTTCGCATAGGTAGGT 58.199 37.500 0.00 0.00 0.00 3.08
898 5065 6.737254 TTCTTTTTCTTTCGCATAGGTAGG 57.263 37.500 0.00 0.00 0.00 3.18
899 5066 9.626045 ATTTTTCTTTTTCTTTCGCATAGGTAG 57.374 29.630 0.00 0.00 0.00 3.18
900 5067 9.620660 GATTTTTCTTTTTCTTTCGCATAGGTA 57.379 29.630 0.00 0.00 0.00 3.08
901 5068 8.141268 TGATTTTTCTTTTTCTTTCGCATAGGT 58.859 29.630 0.00 0.00 0.00 3.08
1050 5266 2.125512 CTGGCTCGTCCCTTTCGG 60.126 66.667 0.00 0.00 0.00 4.30
1407 5629 1.139947 CTCGCCGAGGAAGAGGAAC 59.860 63.158 6.13 0.00 0.00 3.62
1441 5670 2.102925 CCTTGCAACAAAGTGGGTCAAT 59.897 45.455 0.00 0.00 0.00 2.57
1519 5756 3.500299 TCAAATTTGACCTGCGAATTCGA 59.500 39.130 31.01 14.76 39.21 3.71
1692 5930 3.168193 CGATGTTTTCGGTAAATGGTGC 58.832 45.455 0.00 0.00 44.28 5.01
1736 5974 4.941263 GGTCAAATGAGCATACAGTGGTAA 59.059 41.667 7.68 0.00 41.81 2.85
1739 5977 3.346315 TGGTCAAATGAGCATACAGTGG 58.654 45.455 11.00 0.00 46.24 4.00
1824 6063 0.867086 TAACGGCAAACTAACGGTGC 59.133 50.000 0.00 0.00 37.55 5.01
1885 6124 3.620300 CTACGGCCGACTGCGTGAA 62.620 63.158 35.90 4.03 42.61 3.18
1937 6176 8.476064 TGCTACTCTCTCTGATCTGAATTAAT 57.524 34.615 3.72 0.00 0.00 1.40
1945 6184 8.710749 AAGATTAATGCTACTCTCTCTGATCT 57.289 34.615 0.00 0.00 0.00 2.75
1996 7302 7.124901 ACACTTGATGAGATAGAGCCTCTTTAA 59.875 37.037 0.00 0.00 0.00 1.52
2038 7344 4.625311 GCGCATAACCTTTGCAAATACTTT 59.375 37.500 13.23 6.19 40.14 2.66
2112 7418 1.862008 GCGACGATCTCGAGCATTTCT 60.862 52.381 7.81 0.00 46.14 2.52
2272 7578 1.808945 GATCACTGTCAGCCCTTTGTG 59.191 52.381 0.00 0.00 0.00 3.33
2348 7654 1.420514 CCAGCAGGTCATCATCCATCT 59.579 52.381 0.00 0.00 0.00 2.90
2393 7699 0.108138 CAAAGAGTACCGAGGGCCAG 60.108 60.000 6.18 0.00 0.00 4.85
2445 7751 3.710326 TCCTCGTGATTTGGATAGTCG 57.290 47.619 0.00 0.00 0.00 4.18
2454 7760 7.162082 GGTAATCCTCATAATCCTCGTGATTT 58.838 38.462 7.94 0.00 40.92 2.17
2599 7905 2.745821 GGTATTCGGAAACTCCAACCAC 59.254 50.000 0.00 0.00 35.91 4.16
2615 7921 6.479972 TTCCATCAGTGAGAATACGGTATT 57.520 37.500 12.98 12.98 0.00 1.89
2624 7930 2.644299 ACCACCATTCCATCAGTGAGAA 59.356 45.455 0.00 0.00 31.79 2.87
2629 7935 1.351017 ACGAACCACCATTCCATCAGT 59.649 47.619 0.00 0.00 0.00 3.41
2681 7987 3.008485 ACTTCAGTGAGGAAAGGTGGATC 59.992 47.826 9.56 0.00 0.00 3.36
2693 7999 5.954296 AATGGACATCAAACTTCAGTGAG 57.046 39.130 0.00 0.00 0.00 3.51
2744 8050 3.420893 TCCAATAAAACTGGTGCAGAGG 58.579 45.455 0.00 0.00 35.18 3.69
2746 8052 8.849168 CATATATTCCAATAAAACTGGTGCAGA 58.151 33.333 0.00 0.00 35.18 4.26
2747 8053 8.849168 TCATATATTCCAATAAAACTGGTGCAG 58.151 33.333 0.00 0.00 37.52 4.41
2748 8054 8.759481 TCATATATTCCAATAAAACTGGTGCA 57.241 30.769 0.00 0.00 35.30 4.57
2796 8132 4.786507 CAAAATGAAGAAGCACATCGTCA 58.213 39.130 5.56 5.56 41.04 4.35
2836 8173 1.078214 CAAGCTGGCATCCTTCGGA 60.078 57.895 0.00 0.00 35.55 4.55
2837 8174 0.677731 TTCAAGCTGGCATCCTTCGG 60.678 55.000 0.00 0.00 0.00 4.30
2838 8175 1.167851 TTTCAAGCTGGCATCCTTCG 58.832 50.000 0.00 0.00 0.00 3.79
2852 8190 3.495434 ACCTCCGTGTACCATTTTCAA 57.505 42.857 0.00 0.00 0.00 2.69
2860 8198 0.683412 ACCTTGAACCTCCGTGTACC 59.317 55.000 0.00 0.00 0.00 3.34
2914 8254 4.380867 GGATGTCTGATTGTCGCCATTTTT 60.381 41.667 0.00 0.00 0.00 1.94
2915 8255 3.129287 GGATGTCTGATTGTCGCCATTTT 59.871 43.478 0.00 0.00 0.00 1.82
2916 8256 2.684881 GGATGTCTGATTGTCGCCATTT 59.315 45.455 0.00 0.00 0.00 2.32
2917 8257 2.292267 GGATGTCTGATTGTCGCCATT 58.708 47.619 0.00 0.00 0.00 3.16
2932 8272 2.227089 GAGCAAGGACGGACGGATGT 62.227 60.000 0.00 0.00 0.00 3.06
2948 8288 2.235898 ACTGATTCAGACCAGGAAGAGC 59.764 50.000 20.33 0.00 35.18 4.09
2957 8297 3.406764 AGAAAGCACACTGATTCAGACC 58.593 45.455 20.33 5.34 35.18 3.85
3005 8349 8.149647 TGACAGCAAACCTTCAATCATAAAAAT 58.850 29.630 0.00 0.00 0.00 1.82
3021 8365 1.133790 GATCAGGCCATGACAGCAAAC 59.866 52.381 5.01 0.00 41.91 2.93
3026 8370 0.179026 CCAGGATCAGGCCATGACAG 60.179 60.000 5.01 0.00 41.91 3.51
3043 8388 2.877866 TCCGCCTTTGTTAAATTCCCA 58.122 42.857 0.00 0.00 0.00 4.37
3071 8419 1.857318 CTGACTGACGGACTGCGTCT 61.857 60.000 21.69 4.72 37.29 4.18
3134 8482 9.221933 TGTGACAAAAGTATACGTGGAAATTAT 57.778 29.630 0.00 0.00 0.00 1.28
3135 8483 8.604640 TGTGACAAAAGTATACGTGGAAATTA 57.395 30.769 0.00 0.00 0.00 1.40
3136 8484 7.499321 TGTGACAAAAGTATACGTGGAAATT 57.501 32.000 0.00 0.00 0.00 1.82
3144 8511 6.847792 GCATCATCATGTGACAAAAGTATACG 59.152 38.462 0.00 0.00 40.28 3.06
3217 8586 3.635373 AGAATGCCGCAATCATCAAGAAT 59.365 39.130 11.00 0.00 0.00 2.40
3233 8604 8.907885 ACAAATATAGGAAGGAAAAGAGAATGC 58.092 33.333 0.00 0.00 0.00 3.56
3245 8616 8.463930 TTCCTAAATGCACAAATATAGGAAGG 57.536 34.615 14.63 0.00 41.94 3.46
3281 8658 5.809464 TCTTGCACGCATCAAATACTATTG 58.191 37.500 0.00 0.00 0.00 1.90
3293 8670 1.527034 ACACAAGATCTTGCACGCAT 58.473 45.000 30.95 11.30 44.03 4.73
3295 8672 3.536158 TTTACACAAGATCTTGCACGC 57.464 42.857 30.95 0.00 44.03 5.34
3343 8720 0.903236 GAGTAGGGTCAAGGTGGGAC 59.097 60.000 0.00 0.00 34.52 4.46
3359 8736 4.023707 CGCAAAATGAAGTTCCTCAAGAGT 60.024 41.667 0.00 0.00 0.00 3.24
3373 8750 2.172851 ACGGGTTAGTCGCAAAATGA 57.827 45.000 0.00 0.00 0.00 2.57
3382 8759 3.496155 CACTCTCGTTAACGGGTTAGTC 58.504 50.000 26.12 0.00 41.39 2.59
3388 8765 2.159327 AAACCACTCTCGTTAACGGG 57.841 50.000 26.51 24.35 42.17 5.28
3391 8768 8.026341 AGCTATTAAAAACCACTCTCGTTAAC 57.974 34.615 0.00 0.00 0.00 2.01
3393 8770 6.529125 CGAGCTATTAAAAACCACTCTCGTTA 59.471 38.462 0.00 0.00 36.96 3.18
3394 8771 5.347907 CGAGCTATTAAAAACCACTCTCGTT 59.652 40.000 0.00 0.00 36.96 3.85
3395 8772 4.863131 CGAGCTATTAAAAACCACTCTCGT 59.137 41.667 0.00 0.00 36.96 4.18
3396 8773 5.100259 TCGAGCTATTAAAAACCACTCTCG 58.900 41.667 0.00 0.00 41.28 4.04
3397 8774 5.005875 GCTCGAGCTATTAAAAACCACTCTC 59.994 44.000 29.88 0.00 38.21 3.20
3398 8775 4.870991 GCTCGAGCTATTAAAAACCACTCT 59.129 41.667 29.88 0.00 38.21 3.24
3399 8776 5.145198 GCTCGAGCTATTAAAAACCACTC 57.855 43.478 29.88 0.00 38.21 3.51
3414 8791 1.068250 GGTACCATGGAGCTCGAGC 59.932 63.158 30.01 30.01 42.49 5.03
3430 10474 2.355716 CGATTGTACTGTTCATGGGGGT 60.356 50.000 0.00 0.00 0.00 4.95
3433 10477 5.621197 TTTTCGATTGTACTGTTCATGGG 57.379 39.130 0.00 0.00 0.00 4.00
3464 10508 9.599866 AAAGTTTCAGAATTTTCGGATCTTTTT 57.400 25.926 12.94 4.30 35.21 1.94
3465 10509 9.034544 CAAAGTTTCAGAATTTTCGGATCTTTT 57.965 29.630 14.56 6.30 35.81 2.27
3466 10510 8.197439 ACAAAGTTTCAGAATTTTCGGATCTTT 58.803 29.630 12.94 12.94 36.94 2.52
3468 10512 7.141363 CACAAAGTTTCAGAATTTTCGGATCT 58.859 34.615 0.00 0.00 31.68 2.75
3469 10513 6.363357 CCACAAAGTTTCAGAATTTTCGGATC 59.637 38.462 0.00 0.00 31.68 3.36
3470 10514 6.215845 CCACAAAGTTTCAGAATTTTCGGAT 58.784 36.000 0.00 0.00 31.68 4.18
3474 10518 7.710475 TCAATCCCACAAAGTTTCAGAATTTTC 59.290 33.333 0.00 0.00 0.00 2.29
3476 10520 7.123355 TCAATCCCACAAAGTTTCAGAATTT 57.877 32.000 0.00 0.00 0.00 1.82
3478 10522 6.923199 ATCAATCCCACAAAGTTTCAGAAT 57.077 33.333 0.00 0.00 0.00 2.40
3479 10523 6.729690 AATCAATCCCACAAAGTTTCAGAA 57.270 33.333 0.00 0.00 0.00 3.02
3480 10524 7.669304 TCATAATCAATCCCACAAAGTTTCAGA 59.331 33.333 0.00 0.00 0.00 3.27
3481 10525 7.756722 GTCATAATCAATCCCACAAAGTTTCAG 59.243 37.037 0.00 0.00 0.00 3.02
3482 10526 7.309744 GGTCATAATCAATCCCACAAAGTTTCA 60.310 37.037 0.00 0.00 0.00 2.69
3483 10527 7.035612 GGTCATAATCAATCCCACAAAGTTTC 58.964 38.462 0.00 0.00 0.00 2.78
3484 10528 6.496565 TGGTCATAATCAATCCCACAAAGTTT 59.503 34.615 0.00 0.00 0.00 2.66
3485 10529 6.015918 TGGTCATAATCAATCCCACAAAGTT 58.984 36.000 0.00 0.00 0.00 2.66
3487 10531 6.528537 TTGGTCATAATCAATCCCACAAAG 57.471 37.500 0.00 0.00 0.00 2.77
3489 10533 7.493499 AATTTGGTCATAATCAATCCCACAA 57.507 32.000 0.00 0.00 0.00 3.33
3490 10534 7.493499 AAATTTGGTCATAATCAATCCCACA 57.507 32.000 0.00 0.00 0.00 4.17
3491 10535 7.823799 ACAAAATTTGGTCATAATCAATCCCAC 59.176 33.333 10.71 0.00 34.12 4.61
3492 10536 7.915930 ACAAAATTTGGTCATAATCAATCCCA 58.084 30.769 10.71 0.00 34.12 4.37
3493 10537 9.533253 CTACAAAATTTGGTCATAATCAATCCC 57.467 33.333 10.71 0.00 34.12 3.85
3494 10538 9.533253 CCTACAAAATTTGGTCATAATCAATCC 57.467 33.333 10.71 0.00 34.12 3.01
3496 10540 9.874205 CACCTACAAAATTTGGTCATAATCAAT 57.126 29.630 10.71 0.00 34.12 2.57
3497 10541 7.816995 GCACCTACAAAATTTGGTCATAATCAA 59.183 33.333 10.71 0.00 34.12 2.57
3498 10542 7.178274 AGCACCTACAAAATTTGGTCATAATCA 59.822 33.333 10.71 0.00 34.12 2.57
3499 10543 7.547227 AGCACCTACAAAATTTGGTCATAATC 58.453 34.615 10.71 0.00 34.12 1.75
3500 10544 7.480760 AGCACCTACAAAATTTGGTCATAAT 57.519 32.000 10.71 0.00 34.12 1.28
3501 10545 6.909550 AGCACCTACAAAATTTGGTCATAA 57.090 33.333 10.71 0.00 34.12 1.90
3502 10546 6.686630 CAAGCACCTACAAAATTTGGTCATA 58.313 36.000 10.71 0.00 34.12 2.15
3503 10547 5.540911 CAAGCACCTACAAAATTTGGTCAT 58.459 37.500 10.71 0.00 34.12 3.06
3504 10548 4.739137 GCAAGCACCTACAAAATTTGGTCA 60.739 41.667 10.71 0.00 34.12 4.02
3505 10549 3.740832 GCAAGCACCTACAAAATTTGGTC 59.259 43.478 10.71 0.00 34.12 4.02
3506 10550 3.133721 TGCAAGCACCTACAAAATTTGGT 59.866 39.130 10.71 3.18 34.12 3.67
3508 10552 5.731599 TTTGCAAGCACCTACAAAATTTG 57.268 34.783 3.89 3.89 0.00 2.32
3509 10553 6.940831 AATTTGCAAGCACCTACAAAATTT 57.059 29.167 0.00 0.00 35.79 1.82
3510 10554 6.940831 AAATTTGCAAGCACCTACAAAATT 57.059 29.167 0.00 0.00 35.79 1.82
3512 10556 6.150140 ACAAAAATTTGCAAGCACCTACAAAA 59.850 30.769 0.00 0.00 41.79 2.44
3513 10557 5.645497 ACAAAAATTTGCAAGCACCTACAAA 59.355 32.000 0.00 0.00 41.79 2.83
3514 10558 5.064452 CACAAAAATTTGCAAGCACCTACAA 59.936 36.000 0.00 0.00 41.79 2.41
3515 10559 4.569966 CACAAAAATTTGCAAGCACCTACA 59.430 37.500 0.00 0.00 41.79 2.74
3516 10560 4.570369 ACACAAAAATTTGCAAGCACCTAC 59.430 37.500 0.00 0.00 41.79 3.18
3517 10561 4.764172 ACACAAAAATTTGCAAGCACCTA 58.236 34.783 0.00 0.00 41.79 3.08
3518 10562 3.608796 ACACAAAAATTTGCAAGCACCT 58.391 36.364 0.00 0.00 41.79 4.00
3519 10563 3.242706 GGACACAAAAATTTGCAAGCACC 60.243 43.478 0.00 1.89 41.79 5.01
3520 10564 3.373439 TGGACACAAAAATTTGCAAGCAC 59.627 39.130 0.00 0.00 41.79 4.40
3521 10565 3.603532 TGGACACAAAAATTTGCAAGCA 58.396 36.364 0.00 0.00 41.79 3.91
3534 10578 7.232534 AGCTCCTAAAATGTTATTTGGACACAA 59.767 33.333 0.00 0.00 34.07 3.33
3535 10579 6.719370 AGCTCCTAAAATGTTATTTGGACACA 59.281 34.615 0.00 0.00 0.00 3.72
3536 10580 7.094377 TGAGCTCCTAAAATGTTATTTGGACAC 60.094 37.037 12.15 0.00 0.00 3.67
3537 10581 6.945435 TGAGCTCCTAAAATGTTATTTGGACA 59.055 34.615 12.15 0.00 0.00 4.02
3538 10582 7.391148 TGAGCTCCTAAAATGTTATTTGGAC 57.609 36.000 12.15 0.00 0.00 4.02
3539 10583 9.120538 GTATGAGCTCCTAAAATGTTATTTGGA 57.879 33.333 12.15 0.00 0.00 3.53
3541 10585 9.941664 CTGTATGAGCTCCTAAAATGTTATTTG 57.058 33.333 12.15 0.00 0.00 2.32
3542 10586 9.905713 TCTGTATGAGCTCCTAAAATGTTATTT 57.094 29.630 12.15 0.00 0.00 1.40
3544 10588 9.905713 TTTCTGTATGAGCTCCTAAAATGTTAT 57.094 29.630 12.15 0.00 0.00 1.89
3545 10589 9.733556 TTTTCTGTATGAGCTCCTAAAATGTTA 57.266 29.630 12.15 0.00 0.00 2.41
3547 10591 8.814038 ATTTTCTGTATGAGCTCCTAAAATGT 57.186 30.769 12.15 0.00 0.00 2.71
3550 10594 9.733556 TGTTATTTTCTGTATGAGCTCCTAAAA 57.266 29.630 12.15 5.64 0.00 1.52
3551 10595 9.733556 TTGTTATTTTCTGTATGAGCTCCTAAA 57.266 29.630 12.15 0.00 0.00 1.85
3552 10596 9.905713 ATTGTTATTTTCTGTATGAGCTCCTAA 57.094 29.630 12.15 0.00 0.00 2.69



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.